BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10331
(183 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OT3|A Chain A, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 274
Score = 181 bits (460), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 87/180 (48%), Positives = 120/180 (66%), Gaps = 4/180 (2%)
Query: 2 QNFYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMISLYPLLFCPPFTSDEDQDLEIQ 61
Q+FY A+RM+ V + E ++D +EKY M LY +FCP T DE +DL IQ
Sbjct: 60 QDFYHNVAERMQTR---GKVPPERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQ 116
Query: 62 ERIRQLKWVNAKHLDCGIEETNATVRDLVYNSMTKLLEMDSVRAPQDKLACVVACCRDIF 121
+RIR L+WV + L + E V D+V ++T ++EMDS R P+DKLAC+ C + IF
Sbjct: 117 KRIRALRWVTPQMLCVPVNEDIPEVSDMVVKAITDIIEMDSKRVPRDKLACITKCSKHIF 176
Query: 122 LLLQ-SSVGPASADEFLPALIFLVLKMNPARLKSNIHFVTRFCNANRLMSGEAGYFFTNL 180
++ + PASAD+FLP LI++VLK NP RL+SNI ++TRFCN +RLM+GE GY+FTNL
Sbjct: 177 NAIKITKNEPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNL 236
>pdb|1TXU|A Chain A, Crystal Structure Of The Vps9 Domain Of Rabex-5
Length = 273
Score = 170 bits (430), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 83/180 (46%), Positives = 114/180 (63%), Gaps = 4/180 (2%)
Query: 2 QNFYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMISLYPLLFCPPFTSDEDQDLEIQ 61
Q+FY A+R + V + E + D +EKY LY +FCP T DE +DL IQ
Sbjct: 62 QDFYHNVAERXQTR---GKVPPERVEKIXDQIEKYIXTRLYKYVFCPETTDDEKKDLAIQ 118
Query: 62 ERIRQLKWVNAKHLDCGIEETNATVRDLVYNSMTKLLEMDSVRAPQDKLACVVACCRDIF 121
+RIR L+WV + L + E V D V ++T ++E DS R P+DKLAC+ C + IF
Sbjct: 119 KRIRALRWVTPQXLCVPVNEDIPEVSDXVVKAITDIIEXDSKRVPRDKLACITKCSKHIF 178
Query: 122 LLLQ-SSVGPASADEFLPALIFLVLKMNPARLKSNIHFVTRFCNANRLMSGEAGYFFTNL 180
++ + PASAD+FLP LI++VLK NP RL+SNI ++TRFCN +RL +GE GY+FTNL
Sbjct: 179 NAIKITKNEPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLXTGEDGYYFTNL 238
>pdb|2EFC|A Chain A, Ara7-GdpATVPS9A
pdb|2EFC|C Chain C, Ara7-GdpATVPS9A
pdb|2EFD|A Chain A, Ara7ATVPS9A
pdb|2EFD|C Chain C, Ara7ATVPS9A
pdb|2EFE|A Chain A, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|C Chain C, Ara7-Gdpnh2ATVPS9A
pdb|4G01|A Chain A, Ara7-gdp-ca2+/vps9a
Length = 267
Score = 87.0 bits (214), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 104/188 (55%), Gaps = 11/188 (5%)
Query: 1 MQNFYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMISLYPLLFCPPFTSDEDQDLEI 60
+Q F+ H L++ S ++ + D +EKY M L+ +F T + D ++
Sbjct: 52 VQEFFSKMEAAFRAHPLWSGCSEEELDSAGDGLEKYVMTKLFTRVFASN-TEEVIADEKL 110
Query: 61 QERIRQLK-WVNAKHLDCGIEETNATVRDLVYNSMTKLLEMDSVRAPQDKLACVVACCRD 119
+++ ++ +++ ++LD N + L + K+ + +AP+DKL C++ CC+
Sbjct: 111 FQKMSLVQQFISPENLDIQPTFQNESSWLLAQKELQKI---NMYKAPRDKLVCILNCCKV 167
Query: 120 IF-LLLQSSVGP----ASADEFLPALIFLVLKMNPARLKSNIHFVTRFCNANRLMSGEAG 174
I LLL +S+ ADEFLP LI++ +K NP +L SN+ ++ R+ ++L+ GEA
Sbjct: 168 INNLLLNASIASNENAPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRESKLV-GEAA 226
Query: 175 YFFTNLVS 182
YFFTN++S
Sbjct: 227 YFFTNILS 234
>pdb|2EFH|A Chain A, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|C Chain C, Ara7-GdpATVPS9A(D185N)
Length = 267
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 104/188 (55%), Gaps = 11/188 (5%)
Query: 1 MQNFYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMISLYPLLFCPPFTSDEDQDLEI 60
+Q F+ H L++ S ++ + D +EKY M L+ +F T + D ++
Sbjct: 52 VQEFFSKMEAAFRAHPLWSGCSEEELDSAGDGLEKYVMTKLFTRVFASN-TEEVIADEKL 110
Query: 61 QERIRQLK-WVNAKHLDCGIEETNATVRDLVYNSMTKLLEMDSVRAPQDKLACVVACCRD 119
+++ ++ +++ ++LD N + L + K+ + +AP+DKL C++ CC+
Sbjct: 111 FQKMSLVQQFISPENLDIQPTFQNESSWLLAQKELQKI---NMYKAPRDKLVCILNCCKV 167
Query: 120 IF-LLLQSSVGP----ASADEFLPALIFLVLKMNPARLKSNIHFVTRFCNANRLMSGEAG 174
I LLL +S+ A+EFLP LI++ +K NP +L SN+ ++ R+ ++L+ GEA
Sbjct: 168 INNLLLNASIASNENAPGANEFLPVLIYVTIKANPPQLHSNLLYIQRYRRESKLV-GEAA 226
Query: 175 YFFTNLVS 182
YFFTN++S
Sbjct: 227 YFFTNILS 234
>pdb|3NAV|A Chain A, Crystal Structure Of An Alpha Subunit Of Tryptophan
Synthase From Vibrio Cholerae O1 Biovar El Tor Str.
N16961
pdb|3NAV|B Chain B, Crystal Structure Of An Alpha Subunit Of Tryptophan
Synthase From Vibrio Cholerae O1 Biovar El Tor Str.
N16961
Length = 271
Score = 30.0 bits (66), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 1 MQNFYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMISLYPLLFCPPFTSDE 54
+ +FYQ K + L ADV + + + EK+ + P+ PP SDE
Sbjct: 114 IDDFYQRCQKAGVDSVLIADVPTNESQPFVAAAEKF---GIQPIFIAPPTASDE 164
>pdb|3UDB|A Chain A, Crystal Structure Of Snrk2.6
pdb|3UDB|B Chain B, Crystal Structure Of Snrk2.6
pdb|3UDB|C Chain C, Crystal Structure Of Snrk2.6
pdb|3UDB|D Chain D, Crystal Structure Of Snrk2.6
pdb|3UDB|E Chain E, Crystal Structure Of Snrk2.6
pdb|3UDB|F Chain F, Crystal Structure Of Snrk2.6
Length = 317
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 161 RFCNANRLMSGEAGYFFTNLVS 182
R CNA R EA +FF L+S
Sbjct: 105 RICNAGRFSEDEARFFFQQLIS 126
>pdb|3ZUU|A Chain A, The Structure Of Ost1 (D160a, S175d) Kinase In Complex
With Gold
pdb|3ZUU|B Chain B, The Structure Of Ost1 (D160a, S175d) Kinase In Complex
With Gold
Length = 362
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 161 RFCNANRLMSGEAGYFFTNLVS 182
R CNA R EA +FF L+S
Sbjct: 105 RICNAGRFSEDEARFFFQQLIS 126
>pdb|3ZUT|A Chain A, The Structure Of Ost1 (D160a) Kinase
pdb|3ZUT|B Chain B, The Structure Of Ost1 (D160a) Kinase
Length = 362
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 161 RFCNANRLMSGEAGYFFTNLVS 182
R CNA R EA +FF L+S
Sbjct: 105 RICNAGRFSEDEARFFFQQLIS 126
>pdb|3UJG|A Chain A, Crystal Structure Of Snrk2.6 In Complex With Hab1
Length = 361
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 161 RFCNANRLMSGEAGYFFTNLVS 182
R CNA R EA +FF L+S
Sbjct: 104 RICNAGRFSEDEARFFFQQLIS 125
>pdb|3UC4|A Chain A, The Crystal Structure Of Snf1-Related Kinase 2.6
pdb|3UC4|B Chain B, The Crystal Structure Of Snf1-Related Kinase 2.6
Length = 362
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 161 RFCNANRLMSGEAGYFFTNLVS 182
R CNA R EA +FF L+S
Sbjct: 105 RICNAGRFSEDEARFFFQQLIS 126
>pdb|3UC3|A Chain A, The Crystal Structure Of Snf1-Related Kinase 2.3
Length = 361
Score = 27.3 bits (59), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 161 RFCNANRLMSGEAGYFFTNLVS 182
R CNA R EA +FF L+S
Sbjct: 106 RICNAGRFSEDEARFFFQQLLS 127
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.137 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,949,330
Number of Sequences: 62578
Number of extensions: 176683
Number of successful extensions: 465
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 445
Number of HSP's gapped (non-prelim): 14
length of query: 183
length of database: 14,973,337
effective HSP length: 93
effective length of query: 90
effective length of database: 9,153,583
effective search space: 823822470
effective search space used: 823822470
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (23.1 bits)