BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10331
(183 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O18973|RABX5_BOVIN Rab5 GDP/GTP exchange factor OS=Bos taurus GN=RABGEF1 PE=1 SV=1
Length = 492
Score = 182 bits (462), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 88/180 (48%), Positives = 120/180 (66%), Gaps = 4/180 (2%)
Query: 2 QNFYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMISLYPLLFCPPFTSDEDQDLEIQ 61
Q+FYQ A+RM+ V + E ++D +EKY M LY +FCP T DE +DL IQ
Sbjct: 184 QDFYQNVAERMQTR---GKVPPERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQ 240
Query: 62 ERIRQLKWVNAKHLDCGIEETNATVRDLVYNSMTKLLEMDSVRAPQDKLACVVACCRDIF 121
+RIR L WV + L + E V D+V ++T ++EMDS R P+DKLAC+ C + IF
Sbjct: 241 KRIRALHWVTPQMLCVPVNEEIPEVSDMVVKAITDIIEMDSKRVPRDKLACITKCSKHIF 300
Query: 122 LLLQ-SSVGPASADEFLPALIFLVLKMNPARLKSNIHFVTRFCNANRLMSGEAGYFFTNL 180
++ + PASAD+FLP LI++VLK NP RL+SNI ++TRFCN +RLM+GE GY+FTNL
Sbjct: 301 NAIKITKNEPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNL 360
>sp|Q9JM13|RABX5_MOUSE Rab5 GDP/GTP exchange factor OS=Mus musculus GN=Rabgef1 PE=1 SV=1
Length = 491
Score = 181 bits (459), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 87/180 (48%), Positives = 120/180 (66%), Gaps = 4/180 (2%)
Query: 2 QNFYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMISLYPLLFCPPFTSDEDQDLEIQ 61
Q+FYQ A+RM+ V + E ++D +EK+ M LY +FCP T DE +DL IQ
Sbjct: 183 QDFYQNVAERMQTR---GKVPPEKVEKIMDQIEKHIMTRLYKFVFCPETTDDEKKDLAIQ 239
Query: 62 ERIRQLKWVNAKHLDCGIEETNATVRDLVYNSMTKLLEMDSVRAPQDKLACVVACCRDIF 121
+RIR L WV + L + E V D+V ++T ++EMDS R P+DKLAC+ C + IF
Sbjct: 240 KRIRALHWVTPQMLCVPVNEEIPEVSDMVVKAITDIIEMDSKRVPRDKLACITRCSKHIF 299
Query: 122 LLLQ-SSVGPASADEFLPALIFLVLKMNPARLKSNIHFVTRFCNANRLMSGEAGYFFTNL 180
++ + PASAD+FLP LI++VLK NP RL+SNI ++TRFCN +RLM+GE GY+FTNL
Sbjct: 300 NAIKITKNEPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNL 359
>sp|Q9UJ41|RABX5_HUMAN Rab5 GDP/GTP exchange factor OS=Homo sapiens GN=RABGEF1 PE=1 SV=2
Length = 708
Score = 172 bits (435), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 80/155 (51%), Positives = 109/155 (70%), Gaps = 1/155 (0%)
Query: 27 ELLLDYVEKYSMISLYPLLFCPPFTSDEDQDLEIQERIRQLKWVNAKHLDCGIEETNATV 86
E ++D +EKY M LY +FCP T DE +DL IQ+RIR L+WV + L + E V
Sbjct: 422 EKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRALRWVTPQMLCVPVNEDIPEV 481
Query: 87 RDLVYNSMTKLLEMDSVRAPQDKLACVVACCRDIFLLLQ-SSVGPASADEFLPALIFLVL 145
D+V ++T ++EMDS R P+DKLAC+ C + IF ++ + PASAD+FLP LI++VL
Sbjct: 482 SDMVVKAITDIIEMDSKRVPRDKLACITKCSKHIFNAIKITKNEPASADDFLPTLIYIVL 541
Query: 146 KMNPARLKSNIHFVTRFCNANRLMSGEAGYFFTNL 180
K NP RL+SNI ++TRFCN +RLM+GE GY+FTNL
Sbjct: 542 KGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNL 576
>sp|O74396|VPS91_SCHPO Vacuolar protein sorting-associated protein 9a
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=vps901 PE=1 SV=3
Length = 572
Score = 91.3 bits (225), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 107/192 (55%), Gaps = 15/192 (7%)
Query: 1 MQNFYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMISLYPLLFCP-------PFTSD 53
+++F + +++E ++ +A S + + + +EK + LY LF P P +S+
Sbjct: 155 IRDFLKFINEKIEQYEPWASGSQAEIDNAKEGMEKLVLNRLYTSLFSPEIAKSGIPLSSE 214
Query: 54 EDQDLE----IQERIRQLKWVNAKHLDCGIEETNATVRDLVYNSMTKLLEMDSVRAPQDK 109
D+E + E++ +W+ ++LD +++++ L + + ++ + AP+DK
Sbjct: 215 HSDDVEEDRVLSEKMELFQWITEENLDIKKQKSSSKFFKLAADELRRI---NDYHAPRDK 271
Query: 110 LACVVACCRDIFLLLQSSVGPASADEFLPALIFLVLKMNPARLKSNIHFVTRFCNANRLM 169
+ C++ CC+ IF L++ V SAD F+P LIF+VL+ PA L SNI ++ RF + +L
Sbjct: 272 IICLLNCCKVIFSYLRNVVKEESADMFVPILIFVVLQARPAHLVSNIQYIQRFRSPEKL- 330
Query: 170 SGEAGYFFTNLV 181
+GE Y+ + L+
Sbjct: 331 TGEVMYYLSTLM 342
>sp|Q9LT31|VPS9A_ARATH Vacuolar protein sorting-associated protein 9A OS=Arabidopsis
thaliana GN=VPS9A PE=1 SV=1
Length = 520
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 105/191 (54%), Gaps = 17/191 (8%)
Query: 1 MQNFYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMISLYPLLFCPPFTSDEDQDLEI 60
+Q F+ H L++ S ++ + D +EKY M L+ +F S+ ++ +
Sbjct: 50 VQEFFSKMEAAFRAHPLWSGCSEEELDSAGDGLEKYVMTKLFTRVFA----SNTEEVIAD 105
Query: 61 QERIRQL----KWVNAKHLDCGIEETNATVRDLVYNSMTKLLEMDSVRAPQDKLACVVAC 116
++ +++ ++++ ++LD N + L + K+ + +AP+DKL C++ C
Sbjct: 106 EKLFQKMSLVQQFISPENLDIQPTFQNESSWLLAQKELQKI---NMYKAPRDKLVCILNC 162
Query: 117 CRDIF-LLLQSSVGP----ASADEFLPALIFLVLKMNPARLKSNIHFVTRFCNANRLMSG 171
C+ I LLL +S+ ADEFLP LI++ +K NP +L SN+ ++ R+ ++L+ G
Sbjct: 163 CKVINNLLLNASIASNENAPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRESKLV-G 221
Query: 172 EAGYFFTNLVS 182
EA YFFTN++S
Sbjct: 222 EAAYFFTNILS 232
>sp|A2RV61|GAPD1_XENLA GTPase-activating protein and VPS9 domain-containing protein 1
OS=Xenopus laevis GN=gapvd1 PE=2 SV=1
Length = 1452
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 93/181 (51%), Gaps = 8/181 (4%)
Query: 1 MQNFYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMISLYPLLFCPPFTSDEDQDLEI 60
++ F Q+ M ++ + S + + +E+ M ++ L F P +D +D +
Sbjct: 1259 VEEFLQSLYGAMAQDVIWQNASEEQLQDAQIAIERSIMNRIFKLAFNPNQDADILRDQVL 1318
Query: 61 QERIRQL-KWVNAKHLDCGIEETNATVRDLVYNS-MTKLLEMDSVRAPQDKLACVVACCR 118
E I++L K V A H I E +R+ + S T++ + + + P+DK+ C++ C
Sbjct: 1319 HEHIKRLSKVVTANHRALQIPE--VYLREAPWPSAQTEIRTISAYKTPRDKVQCILRMCS 1376
Query: 119 DI--FLLLQSSVGPASADEFLPALIFLVLKMNPARLKSNIHFVTRFCNANRLMSGEAGYF 176
I L L + AD+F+P L+F+++K NP L S + +++ F +NRL+ GE Y+
Sbjct: 1377 TIMNLLSLANEYSVPGADDFVPVLVFVLIKANPTYLLSTVQYISSFY-SNRLI-GEESYW 1434
Query: 177 F 177
+
Sbjct: 1435 W 1435
>sp|Q9GYH7|RME6_CAEEL Receptor-mediated endocytosis protein 6 OS=Caenorhabditis elegans
GN=rme-6 PE=1 SV=2
Length = 1093
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 107 QDKLACVVACCRDI--FLLLQSSVGPASADEFLPALIFLVLKMNPARLKSNIHFVTRFCN 164
QDKL CVV CC I + L S ASAD+ P L+F+++K NP L SN+ FV F
Sbjct: 1008 QDKLNCVVRCCDVINNLVALSSKNAVASADDLTPVLVFVIIKANPRALLSNVQFVETFA- 1066
Query: 165 ANRLMSGEAGYFFTNLVS 182
+R+ SG Y++ N S
Sbjct: 1067 GDRIESGRDAYYWVNFKS 1084
>sp|P54787|VPS9_YEAST Vacuolar protein sorting-associated protein 9 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS9 PE=1
SV=2
Length = 451
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 83/161 (51%), Gaps = 14/161 (8%)
Query: 33 VEKYSMISLYPLLFCP--------PFTSDEDQDLE----IQERIRQLKWVNAKHLDCGIE 80
+EK M LY F P P + +DL + E+IR ++++ LD
Sbjct: 137 MEKLIMGKLYSRCFSPSLYEILQKPLDDEHMKDLTNDDTLLEKIRHYRFISPIMLDIPDT 196
Query: 81 ETNATVRDLVYNSMTKLLEMDSVRAPQDKLACVVACCRDIFLLLQ-SSVGPASADEFLPA 139
NA + V+ + +L +++ ++P+DK+ CV+ + IF LL+ + + AD F+P
Sbjct: 197 MPNARLNKFVHLASKELGKINRFKSPRDKMVCVLNASKVIFGLLKHTKLEQNGADSFIPV 256
Query: 140 LIFLVLKMNPARLKSNIHFVTRFCNANRLMSGEAGYFFTNL 180
LI+ +LK L SN++++ RF + + + GE Y+ ++L
Sbjct: 257 LIYCILKGQVRYLVSNVNYIERFRSPD-FIRGEEEYYLSSL 296
>sp|A8WVM4|RME6_CAEBR Receptor-mediated endocytosis protein 6 OS=Caenorhabditis briggsae
GN=rme-6 PE=3 SV=1
Length = 1104
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 76/154 (49%), Gaps = 7/154 (4%)
Query: 33 VEKYSMISLYPLLFCPPFTSDEDQDLEIQERI-RQLKWVNAKHLDCGIEETNATVRDLVY 91
+E++ M ++Y + F P D+ +D +Q I + V H I E + + +
Sbjct: 945 MERFVMFAVYEIAFWPNREMDQKKDKLLQSVIGKASSSVTPVHEALKIPE--HLLGEAPW 1002
Query: 92 NSMTKLLEM-DSVRAPQDKLACVVACCRDI--FLLLQSSVGPASADEFLPALIFLVLKMN 148
S L M D+ Q+KL C+V CC I + L S ASAD+ P L+F+++K N
Sbjct: 1003 PSAQAELSMLDNYVTAQEKLNCLVRCCDVINNLVALSSKNAVASADDLTPVLVFVIIKAN 1062
Query: 149 PARLKSNIHFVTRFCNANRLMSGEAGYFFTNLVS 182
P L SN+ F+ F +++ SG Y++ N S
Sbjct: 1063 PRSLLSNLQFIETFA-GDQIESGRDAYYWVNFKS 1095
>sp|Q14C86|GAPD1_HUMAN GTPase-activating protein and VPS9 domain-containing protein 1
OS=Homo sapiens GN=GAPVD1 PE=1 SV=2
Length = 1478
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 92/183 (50%), Gaps = 12/183 (6%)
Query: 1 MQNFYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMISLYPLLFCPPFTSDEDQDLEI 60
+++F Q M ++ + S + + +E+ M ++ L F P D +D +
Sbjct: 1285 VEDFLQFLYGAMAQDVIWQNASEEQLQDAQLAIERSVMNRIFKLAFYPNQDGDILRDQVL 1344
Query: 61 QERIRQL-KWVNAKHLDCGIEETNATVRDLVYNS-MTKLLEMDSVRAPQDKLACVVACCR 118
E I++L K V A H I E +R+ + S +++ + + + P+DK+ C++ C
Sbjct: 1345 HEHIQRLSKVVTANHRALQIPEV--YLREAPWPSAQSEIRTISAYKTPRDKVQCILRMCS 1402
Query: 119 DIFLLL----QSSVGPASADEFLPALIFLVLKMNPARLKSNIHFVTRFCNANRLMSGEAG 174
I LL + SV AD+F+P L+F+++K NP L S + +++ F + +SGE
Sbjct: 1403 TIMNLLSLANEDSV--PGADDFVPVLVFVLIKANPPCLLSTVQYISSFYAS--CLSGEES 1458
Query: 175 YFF 177
Y++
Sbjct: 1459 YWW 1461
>sp|Q6PAR5|GAPD1_MOUSE GTPase-activating protein and VPS9 domain-containing protein 1 OS=Mus
musculus GN=Gapvd1 PE=1 SV=2
Length = 1458
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 92/183 (50%), Gaps = 12/183 (6%)
Query: 1 MQNFYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMISLYPLLFCPPFTSDEDQDLEI 60
+++F Q M ++ + S + + +E+ M ++ L F P D +D +
Sbjct: 1265 VEDFLQFLYGVMAQDVIWQNASEEQLQDAQLAIERSVMNRIFKLAFYPNQDGDILRDQVL 1324
Query: 61 QERIRQL-KWVNAKHLDCGIEETNATVRDLVYNS-MTKLLEMDSVRAPQDKLACVVACCR 118
E I++L K V A H I E +R+ + S +++ + + + P+DK+ C++ C
Sbjct: 1325 HEHIQRLSKVVTANHRALQIPEV--YLREAPWPSAQSEIRTISAYKTPRDKVQCILRMCS 1382
Query: 119 DIFLLL----QSSVGPASADEFLPALIFLVLKMNPARLKSNIHFVTRFCNANRLMSGEAG 174
I LL + SV AD+F+P L+F+++K NP L S + +++ F + +SGE
Sbjct: 1383 TIMNLLSLANEDSV--PGADDFVPVLVFVLIKANPPCLLSTVQYISSFYAS--CLSGEES 1438
Query: 175 YFF 177
Y++
Sbjct: 1439 YWW 1441
>sp|A5D794|GAPD1_BOVIN GTPase-activating protein and VPS9 domain-containing protein 1 OS=Bos
taurus GN=GAPVD1 PE=2 SV=1
Length = 1413
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 92/183 (50%), Gaps = 12/183 (6%)
Query: 1 MQNFYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMISLYPLLFCPPFTSDEDQDLEI 60
+++F Q M ++ + S + + +E+ M ++ L F P D +D +
Sbjct: 1220 VEDFLQFLYGAMAQDVIWQNASEEQLQDAQLAIERSVMNRIFKLAFYPNQDGDILRDQVL 1279
Query: 61 QERIRQL-KWVNAKHLDCGIEETNATVRDLVYNS-MTKLLEMDSVRAPQDKLACVVACCR 118
E I++L K V A H I E +++ + S +++ + + + P+DK+ C++ C
Sbjct: 1280 HEHIQRLSKVVTANHRALQIPEV--YLKEAPWPSAQSEIRTISAYKTPRDKVQCILRMCS 1337
Query: 119 DIFLLL----QSSVGPASADEFLPALIFLVLKMNPARLKSNIHFVTRFCNANRLMSGEAG 174
I LL + SV AD+F+P L+F+++K NP L S + +++ F + +SGE
Sbjct: 1338 TIMNLLSLANEDSV--PGADDFVPVLVFVLIKANPPCLLSTVQYISSFYAS--CLSGEES 1393
Query: 175 YFF 177
Y++
Sbjct: 1394 YWW 1396
>sp|Q29HW3|RME6_DROPS Receptor-mediated endocytosis protein 6 homolog OS=Drosophila
pseudoobscura pseudoobscura GN=GA14078 PE=3 SV=2
Length = 1774
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 5/90 (5%)
Query: 96 KLLEMDSVRAPQDKLACVVACCRDIFLLLQSSVG--PASADEFLPALIFLVLKMNPARLK 153
+L M + + P++KL C++ C I LL+ S G PA AD+ LP LI++V+ NP L
Sbjct: 1677 QLCHMAAYKTPREKLQCIINCISSIMSLLRMSCGRVPA-ADDLLPVLIYVVIMANPPYLL 1735
Query: 154 SNIHFVTRFCNANRLMSGEAGYFFTNLVSI 183
S + +++ C R + GE +++T S+
Sbjct: 1736 STVEYIS--CFLGRKLDGENEFYWTLFGSV 1763
>sp|Q9VZ08|RME6_DROME Receptor-mediated endocytosis protein 6 homolog OS=Drosophila
melanogaster GN=CG1657 PE=1 SV=2
Length = 1712
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 52/90 (57%), Gaps = 5/90 (5%)
Query: 96 KLLEMDSVRAPQDKLACVVACCRDIFLLLQSSVG--PASADEFLPALIFLVLKMNPARLK 153
+L M + + P++KL C++ C I LL+ S G PA AD+ LP LI++V+ NP L
Sbjct: 1615 QLCHMAAYKTPREKLQCIINCISSIMSLLRMSSGRVPA-ADDLLPVLIYVVIMANPPYLL 1673
Query: 154 SNIHFVTRFCNANRLMSGEAGYFFTNLVSI 183
S + +++ C + + GE +++T S+
Sbjct: 1674 STVEYIS--CFLGKKLEGEDEFYWTLFGSV 1701
>sp|Q8WYP3|RIN2_HUMAN Ras and Rab interactor 2 OS=Homo sapiens GN=RIN2 PE=1 SV=1
Length = 895
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 96 KLLEMDSVRAPQDKLACVVACCRDIFLLLQSSVGPA-SADEFLPALIFLVLKMNPARLKS 154
K + M + +P+ K+ ++ C+ I+ +++++ G AD+FLP L +++ + + L +
Sbjct: 657 KFMTMQKMYSPEKKVMLLLRVCKLIYTVMENNSGRMYGADDFLPVLTYVIAQCDMLELDT 716
Query: 155 NIHFVTRFCNANRLMSGEAGYFFTN 179
I ++ + + L+ GE GY+ T+
Sbjct: 717 EIEYMMELLDPS-LLHGEGGYYLTS 740
>sp|Q9D684|RIN2_MOUSE Ras and Rab interactor 2 OS=Mus musculus GN=Rin2 PE=1 SV=3
Length = 903
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 96 KLLEMDSVRAPQDKLACVVACCRDIFLLLQSSVGPA-SADEFLPALIFLVLKMNPARLKS 154
K + M + +P+ K+ ++ C+ I+ +++++ G AD+FLP L +++ + + L +
Sbjct: 666 KFMTMQKMYSPEKKVMLLLRVCKLIYTVMENNSGRMYGADDFLPVLTYVIAQCDMLELDT 725
Query: 155 NIHFVTRFCNANRLMSGEAGYFFTN 179
I ++ + + L+ GE GY+ T+
Sbjct: 726 EIEYMMELLDPS-LLHGEGGYYLTS 749
>sp|Q6ZS11|RINL_HUMAN Ras and Rab interactor-like protein OS=Homo sapiens GN=RINL PE=2
SV=1
Length = 452
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 96 KLLEMDSVRAPQDKLACVVACCRDIF--LLLQSSVGPASADEFLPALI-FLVLKMNPARL 152
+L + + AP+ K+A ++ CRD++ L + P AD FLPAL L+ +
Sbjct: 299 RLAHLHAACAPRRKVALLLEVCRDVYAGLARGENQDPLGADAFLPALTEELIWSPDIGDT 358
Query: 153 KSNIHFVTRFCNANRLMSGEAGYFFTN 179
+ ++ F+ + + L GEAGY+ T
Sbjct: 359 QLDVEFLMELLDPDELR-GEAGYYLTT 384
>sp|Q921Q7|RIN1_MOUSE Ras and Rab interactor 1 OS=Mus musculus GN=Rin1 PE=1 SV=1
Length = 763
Score = 40.4 bits (93), Expect = 0.007, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 96 KLLEMDSVRAPQDKLACVVACCRDIFLLLQSSVGP-ASADEFLPALIFLVLKMNPARLKS 154
KLL++ +P ++ ++ C+ ++ L+S G A ADEFLP L ++ + + L
Sbjct: 487 KLLQLLRAYSPSAQVKWLLQACKLLYTALKSQAGENAGADEFLPLLSLVLAQCDLPDLLL 546
Query: 155 NIHFVTRFCNANRLMSGEAGYFFT 178
+++ L++GE GY+ T
Sbjct: 547 EAEYMSELLEPT-LLTGEGGYYLT 569
>sp|P59729|RIN3_MOUSE Ras and Rab interactor 3 OS=Mus musculus GN=Rin3 PE=2 SV=2
Length = 980
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 94 MTKLLEMDSVRAPQDKLACVVACCRDIF--LLLQSSVGPASADEFLPALIFLVLKMNPAR 151
+ KL M +P K++ ++ C+ I+ + L + P AD+FLP L++++ + N
Sbjct: 740 LQKLTSMHKAYSPGKKISILLKTCKLIYDSMALGNPGKPYGADDFLPVLMYVLARSNLTE 799
Query: 152 LKSNIHFVTRFCNANRLMSGEAGYFFTN 179
+ N+ ++ + L GE Y+ T
Sbjct: 800 MLLNVEYMMELMDPA-LQLGEGSYYLTT 826
>sp|Q80UW3|RINL_MOUSE Ras and Rab interactor-like protein OS=Mus musculus GN=Rinl PE=1
SV=1
Length = 563
Score = 40.0 bits (92), Expect = 0.009, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 96 KLLEMDSVRAPQDKLACVVACCRDIFLLLQSSVG--PASADEFLPALI-FLVLKMNPARL 152
+L + + AP+ K+A ++A C D++ L P AD FLPAL L+ +
Sbjct: 416 RLAHLHAACAPRRKVALLLAVCSDVYAGLGGGENKEPLGADAFLPALTEELIWSPHIGET 475
Query: 153 KSNIHFVTRFCNANRLMSGEAGYFFT 178
+ ++ F+ + L GEAGY+ T
Sbjct: 476 QLDVEFLMELLDPGEL-RGEAGYYLT 500
>sp|Q13671|RIN1_HUMAN Ras and Rab interactor 1 OS=Homo sapiens GN=RIN1 PE=1 SV=4
Length = 783
Score = 39.7 bits (91), Expect = 0.012, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 96 KLLEMDSVRAPQDKLACVVACCRDIFLLLQSSVGP-ASADEFLPALIFLVLKMNPARLKS 154
KLL++ +P ++ ++ C+ +++ L++ G A ADEFLP L ++ + L
Sbjct: 498 KLLQLLRTYSPSAQVKRLLQACKLLYMALRTQEGEGAGADEFLPLLSLVLAHCDLPELLL 557
Query: 155 NIHFVTRFCNANRLMSGEAGYFFT 178
+++ + L++GE GY+ T
Sbjct: 558 EAEYMSELLEPS-LLTGEGGYYLT 580
>sp|P97680|RIN1_RAT Ras and Rab interactor 1 OS=Rattus norvegicus GN=Rin1 PE=2 SV=2
Length = 774
Score = 39.7 bits (91), Expect = 0.012, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 96 KLLEMDSVRAPQDKLACVVACCRDIFLLLQSSVGP-ASADEFLPALIFLVLKMNPARLKS 154
KLL++ +P ++ ++ C+ ++ L++ G A ADEFLP L ++ + + L
Sbjct: 498 KLLQLLRAYSPSAQIKWLLQACKLLYTALKTQAGENAGADEFLPLLSLVLAQCDLPDLLL 557
Query: 155 NIHFVTRFCNANRLMSGEAGYFFT 178
+++ L++GE GY+ T
Sbjct: 558 EAEYMSELLEPT-LLTGEGGYYLT 580
>sp|Q8TB24|RIN3_HUMAN Ras and Rab interactor 3 OS=Homo sapiens GN=RIN3 PE=1 SV=4
Length = 985
Score = 38.9 bits (89), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 94 MTKLLEMDSVRAPQDKLACVVACCRDIF--LLLQSSVGPASADEFLPALIFLVLKMNPAR 151
+ K M +P+ K++ ++ C+ I+ + L + P AD+FLP L++++ + N
Sbjct: 743 LQKFTSMHKAYSPEKKISILLKTCKLIYDSMALGNPGKPYGADDFLPVLMYVLARSNLTE 802
Query: 152 LKSNIHFVTRFCNANRLMSGEAGYFFTN 179
+ N+ ++ + L GE Y+ T
Sbjct: 803 MLLNVEYMMELMDPA-LQLGEGSYYLTT 829
>sp|Q8C190|VP9D1_MOUSE VPS9 domain-containing protein 1 OS=Mus musculus GN=Vps9d1 PE=2
SV=1
Length = 649
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 16/92 (17%)
Query: 106 PQDKLACVVACCRDIFLLLQ------------SSVGPASA---DEFLPALIFLVLKMNPA 150
PQ KL C+V R I + + S PA+A D+ LP L F+VL+
Sbjct: 544 PQKKLECIVRTLRVICICAEDYCRAQEARPEGESQPPAAAIGADDLLPILSFVVLRSGLP 603
Query: 151 RLKSNIHFVTRFCNANRLMSGEAGYFFTNLVS 182
+L S + F + L+ GE GY T+L S
Sbjct: 604 QLVSECAALEEFTHEGYLI-GEEGYCLTSLQS 634
>sp|Q8MQW8|SPRI_DROME Protein sprint OS=Drosophila melanogaster GN=spri PE=2 SV=2
Length = 1790
Score = 33.9 bits (76), Expect = 0.69, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 27/121 (22%)
Query: 76 DCGIEET-----NATVRDLVYNSMTKLLEMDSVRAPQDKLACVVACCRDIFLLLQSSVGP 130
D GI T A +R L+ N + +L E + P DKL ++FL + S+V
Sbjct: 1553 DFGIRPTVTPPSQAALR-LIANLLWRLQEAE---LPLDKL--------ELFLCVISTVFD 1600
Query: 131 AS---------ADEFLPALIFLVLKMNPARLKSNIHFVTRFCNANRLMSGEAGYFFTNLV 181
A+ AD+FLP L+++V K + F+ L++GE GY+ T L
Sbjct: 1601 ATGCPRGQQLGADDFLPVLVYVVAKCGFVGAEIEAEFMWGLLQPT-LLNGEPGYYLTALC 1659
Query: 182 S 182
S
Sbjct: 1660 S 1660
>sp|Q8D8B1|TRPA_VIBVU Tryptophan synthase alpha chain OS=Vibrio vulnificus (strain CMCP6)
GN=trpA PE=3 SV=1
Length = 268
Score = 33.5 bits (75), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 1 MQNFYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMISLYPLLFCPPFTSDE 54
++NFYQ A+ + L ADV + + EK+ ++P+ PP SDE
Sbjct: 111 IENFYQRCAQAGIDSVLIADVPTNESAEFVAAAEKF---GVHPIFIAPPTASDE 161
>sp|Q7MM57|TRPA_VIBVY Tryptophan synthase alpha chain OS=Vibrio vulnificus (strain YJ016)
GN=trpA PE=3 SV=1
Length = 268
Score = 33.1 bits (74), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 1 MQNFYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMISLYPLLFCPPFTSDE 54
++NFYQ A+ + L ADV + + EK+ ++P+ PP SDE
Sbjct: 111 IENFYQRCAQAGIDSVLIADVPTNESAEFVAAAEKF---GVHPIFIAPPTASDE 161
>sp|B7VGU8|TRPA_VIBSL Tryptophan synthase alpha chain OS=Vibrio splendidus (strain LGP32)
GN=trpA PE=3 SV=1
Length = 268
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 1 MQNFYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMISLYPLLFCPPFTSDE 54
++NFY+ AK + L ADV + + +K+ ++P+ PP SDE
Sbjct: 111 IENFYERCAKAGIDSVLIADVPTNESGEFVAAAKKFG---IHPIFIAPPTASDE 161
>sp|A7IH28|ATPD_XANP2 ATP synthase subunit delta OS=Xanthobacter autotrophicus (strain
ATCC BAA-1158 / Py2) GN=atpH PE=3 SV=1
Length = 201
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 13/101 (12%)
Query: 77 CGIEETNATVRDLVYNSMTKLLEM-------DSVRAPQDKLACVVACCRDIFLLLQSSVG 129
CG+ +T V + T L E+ DSV+A D+L+ ++A D+ L++S V
Sbjct: 16 CGVADT--IVSGMAGRYATALFELATEAGAVDSVKADLDRLSALIAESADLARLVKSPV- 72
Query: 130 PASADEFLPALIFLVLKMNPARLKSNIHFVTRFCNANRLMS 170
SA+E L A+ ++ + + L N FV R RL +
Sbjct: 73 -FSAEEQLKAISAVLDQAGISGLAGN--FVRRVAQNRRLFA 110
>sp|O68429|TRPA_BUCDN Tryptophan synthase alpha chain OS=Buchnera aphidicola subsp.
Diuraphis noxia GN=trpA PE=3 SV=1
Length = 270
Score = 30.8 bits (68), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 1 MQNFYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMISLYPLLFCPPFTSDEDQDLEI 60
+ NFY K + L ADV ++ E+ KY + S++ CPP +D+D I
Sbjct: 111 LDNFYLKCRKSGVDSVLIADVPIEESEIFYTTANKYKISSIF---ICPP-NADDDLLYRI 166
Query: 61 QERIRQLKWVNAKHLDCGIEETN 83
+ +V ++ GIE N
Sbjct: 167 SLYAKGYIYVLSRPGVTGIENQN 189
>sp|Q83C83|DER_COXBU GTPase Der OS=Coxiella burnetii (strain RSA 493 / Nine Mile phase
I) GN=der PE=3 SV=1
Length = 443
Score = 30.8 bits (68), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 3 NFYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMI 39
+ Y FA+ EN+ L + R + DYVEK+SMI
Sbjct: 213 SIYIPFARNDENYTLIDTAGIRRRAKIQDYVEKFSMI 249
>sp|A9NDV6|DER_COXBR GTPase Der OS=Coxiella burnetii (strain RSA 331 / Henzerling II)
GN=der PE=3 SV=1
Length = 443
Score = 30.8 bits (68), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 3 NFYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMI 39
+ Y FA+ EN+ L + R + DYVEK+SMI
Sbjct: 213 SIYIPFARNDENYTLIDTAGIRRRAKIQDYVEKFSMI 249
>sp|A9KFU3|DER_COXBN GTPase Der OS=Coxiella burnetii (strain Dugway 5J108-111) GN=der
PE=3 SV=1
Length = 443
Score = 30.8 bits (68), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 3 NFYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMI 39
+ Y FA+ EN+ L + R + DYVEK+SMI
Sbjct: 213 SIYIPFARNDENYTLIDTAGIRRRAKIQDYVEKFSMI 249
>sp|B6J7Q3|DER_COXB1 GTPase Der OS=Coxiella burnetii (strain CbuK_Q154) GN=der PE=3 SV=1
Length = 443
Score = 30.8 bits (68), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 3 NFYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMI 39
+ Y FA+ EN+ L + R + DYVEK+SMI
Sbjct: 213 SIYIPFARNDENYTLIDTAGIRRRAKIQDYVEKFSMI 249
>sp|B6IZN3|DER_COXB2 GTPase Der OS=Coxiella burnetii (strain CbuG_Q212) GN=der PE=3 SV=1
Length = 443
Score = 30.8 bits (68), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 3 NFYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMI 39
+ Y FA+ EN+ L + R + DYVEK+SMI
Sbjct: 213 SIYIPFARNDENYTLIDTAGIRRRAKIQDYVEKFSMI 249
>sp|Q9Y2B5|VP9D1_HUMAN VPS9 domain-containing protein 1 OS=Homo sapiens GN=VPS9D1 PE=2
SV=2
Length = 631
Score = 30.4 bits (67), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 38/93 (40%), Gaps = 17/93 (18%)
Query: 106 PQDKLACVVACCRDIFLLLQSSVGPASA----------------DEFLPALIFLVLKMNP 149
PQ KL C+V R I + + A D+ LP L F+VL+
Sbjct: 525 PQKKLECIVRTLRIICVCAEDYCPTPEATPQAGPPPIAAAAIGADDLLPILSFVVLRSGL 584
Query: 150 ARLKSNIHFVTRFCNANRLMSGEAGYFFTNLVS 182
+L S + F + L+ GE GY T+L S
Sbjct: 585 PQLVSECAALEEFIHEGYLI-GEEGYCLTSLQS 616
>sp|Q9QJ29|VU54_HHV6Z Protein U54 OS=Human herpesvirus 6B (strain Z29) GN=U54 PE=3 SV=1
Length = 459
Score = 30.4 bits (67), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 12/78 (15%)
Query: 13 ENHKLYADVSAQDRELLLDYVEKYSMISLYPLLFCPPFTSDEDQDLEIQERIRQLKWVNA 72
E LY + AQ + ++Y ++ + +P PP + E W
Sbjct: 303 ETRPLYITMKAQKKNCRINYSQELGKVFFFPKQILPPGNNIE------------FSWTEM 350
Query: 73 KHLDCGIEETNATVRDLV 90
++ IE N V+D+V
Sbjct: 351 SNIYVNIESPNGPVKDIV 368
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.137 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,172,044
Number of Sequences: 539616
Number of extensions: 2342459
Number of successful extensions: 7070
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 7023
Number of HSP's gapped (non-prelim): 42
length of query: 183
length of database: 191,569,459
effective HSP length: 110
effective length of query: 73
effective length of database: 132,211,699
effective search space: 9651454027
effective search space used: 9651454027
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)