Query psy10331
Match_columns 183
No_of_seqs 119 out of 613
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 15:16:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10331.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10331hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00167 VPS9 Domain present 100.0 5.1E-35 1.1E-39 210.4 8.5 93 90-183 2-95 (117)
2 PF02204 VPS9: Vacuolar sortin 99.9 4.3E-28 9.3E-33 171.2 8.3 93 90-183 1-95 (104)
3 KOG2320|consensus 99.7 6.5E-17 1.4E-21 140.4 11.7 176 3-183 310-497 (651)
4 KOG2319|consensus 99.4 1.4E-12 2.9E-17 114.6 12.3 157 25-182 174-332 (477)
5 KOG2319|consensus 99.3 8E-13 1.7E-17 116.0 0.3 177 1-182 7-185 (477)
6 PF06570 DUF1129: Protein of u 37.3 87 0.0019 24.4 5.1 34 2-39 7-40 (206)
7 PF08038 Tom7: TOM7 family; I 35.8 29 0.00062 20.2 1.6 19 135-153 18-39 (42)
8 PRK07668 hypothetical protein; 29.7 1.4E+02 0.0029 24.5 5.1 35 2-40 7-41 (254)
9 COG0735 Fur Fe2+/Zn2+ uptake r 28.9 2.3E+02 0.0051 20.7 6.1 68 91-167 6-73 (145)
10 TIGR03092 SASP_sspI small, aci 28.3 46 0.00099 21.3 1.7 21 16-36 43-63 (65)
11 smart00099 btg1 tob/btg1 famil 27.1 2.3E+02 0.005 20.0 5.5 68 4-76 8-85 (108)
12 PF09045 L27_2: L27_2; InterP 25.3 1.8E+02 0.0039 18.2 4.7 36 4-41 8-43 (58)
13 PRK02955 small acid-soluble sp 24.8 52 0.0011 21.2 1.5 21 16-36 46-66 (68)
14 PF04878 Baculo_p48: Baculovir 23.8 59 0.0013 28.0 2.1 49 102-150 124-180 (374)
15 KOG3910|consensus 22.6 83 0.0018 28.4 2.8 37 90-126 541-581 (632)
No 1
>smart00167 VPS9 Domain present in VPS9. Domain present in yeast vacuolar sorting protein 9 and other proteins.
Probab=100.00 E-value=5.1e-35 Score=210.44 Aligned_cols=93 Identities=31% Similarity=0.649 Sum_probs=87.9
Q ss_pred HHHHHHHHhcCcCCCChHHHHHHHHHHHHHHHHHHhccC-CCCChhhhHHHHHHHHHhcCccchhHHHHHHHHccccccc
Q psy10331 90 VYNSMTKLLEMDSVRAPQDKLACVVACCRDIFLLLQSSV-GPASADEFLPALIFLVLKMNPARLKSNIHFVTRFCNANRL 168 (183)
Q Consensus 90 ~~~ai~~L~~i~~~~tP~~KL~~l~~~~~~I~~~~~~~~-~~~~ADdlLPiliyviika~~~~l~s~i~yI~~f~~~~~l 168 (183)
|+.|+.+|++||.++||+|||.||++||+.|++.++.+. .++|||||||+||||||||+||+++||++||++|++++.
T Consensus 2 ~~~a~~eL~~i~~~~sP~dKL~~il~~~~~I~~~l~~~~~~~~~ADdfLPilIYviika~~~~l~sn~~yI~~f~~~~~- 80 (117)
T smart00167 2 VEIEQIELKFLQLYKSPSDKIKCLLRACKLIYTLLETQSGEVAGADDFLPVLIYVIIKCDPRDLLLNAEYMEEFLEPSL- 80 (117)
T ss_pred ccHHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHhccChhhHHHHHHHHHHHCCccc-
Confidence 678999999999999999999999999999999998655 679999999999999999999999999999999999985
Q ss_pred cCcchhhHHhhhcCC
Q psy10331 169 MSGEAGYFFTNLVSI 183 (183)
Q Consensus 169 ~~gE~~Y~lt~~~aA 183 (183)
+.||.|||||||+||
T Consensus 81 l~gE~gY~lT~l~aA 95 (117)
T smart00167 81 LTGEGGYYLTSLSAA 95 (117)
T ss_pred cccHHHHHHHHHHHH
Confidence 589999999999997
No 2
>PF02204 VPS9: Vacuolar sorting protein 9 (VPS9) domain; InterPro: IPR003123 This domain is present in yeast vacuolar sorting protein 9 and other proteins.; PDB: 1TXU_A 2OT3_A 2EFD_A 2EFE_C 2EFC_C 2EFH_A.
Probab=99.95 E-value=4.3e-28 Score=171.24 Aligned_cols=93 Identities=34% Similarity=0.674 Sum_probs=79.7
Q ss_pred HHHHHHHHhcCcCCCChHHHHHHHHHHHHHHHHHHh--ccCCCCChhhhHHHHHHHHHhcCccchhHHHHHHHHcccccc
Q psy10331 90 VYNSMTKLLEMDSVRAPQDKLACVVACCRDIFLLLQ--SSVGPASADEFLPALIFLVLKMNPARLKSNIHFVTRFCNANR 167 (183)
Q Consensus 90 ~~~ai~~L~~i~~~~tP~~KL~~l~~~~~~I~~~~~--~~~~~~~ADdlLPiliyviika~~~~l~s~i~yI~~f~~~~~ 167 (183)
|++|+++|++|+..+||.+|+.||.++++.|.+.+. ....++||||+||+++|+|+||+|+++.|++.||++|+.++
T Consensus 1 ~~~a~~~L~~i~~~~sP~~Kl~~l~~~~~~I~~~~~~~~~~~~~~aDdllpiliyvli~s~~~~l~s~i~~i~~f~~~~- 79 (104)
T PF02204_consen 1 WEKAIEELKKINSVKSPLEKLKCLVKAFKEIQNAIKTSKSPSEISADDLLPILIYVLIKSNPPNLYSNIKYIEDFIDSS- 79 (104)
T ss_dssp -HHHHHHHHHGGG--SHHHHHHHHHHHHHHHHHHHHHHCCTS-B-HHHHHHHHHHHHHHH--TTHHHHHHHHHHHSCCC-
T ss_pred CHHHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHHHHHHhcCcccHHHHHHHHHHHcccc-
Confidence 678999999999999999999999999999999992 22378999999999999999999999999999999999776
Q ss_pred ccCcchhhHHhhhcCC
Q psy10331 168 LMSGEAGYFFTNLVSI 183 (183)
Q Consensus 168 l~~gE~~Y~lt~~~aA 183 (183)
.+.||.||++|||+||
T Consensus 80 ~~~~e~~y~ltt~~aA 95 (104)
T PF02204_consen 80 LLSGEEGYYLTTFEAA 95 (104)
T ss_dssp TTSCHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHH
Confidence 4699999999999987
No 3
>KOG2320|consensus
Probab=99.71 E-value=6.5e-17 Score=140.42 Aligned_cols=176 Identities=19% Similarity=0.282 Sum_probs=128.3
Q ss_pred hHHHHHHHHHhcCcccC------CCCHHHHHHHHH-HHHHHHHHhhhhhhcCCCCCCChHhHHHHHHHHHhhhh---CCC
Q psy10331 3 NFYQTFAKRMENHKLYA------DVSAQDRELLLD-YVEKYSMISLYPLLFCPPFTSDEDQDLEIQERIRQLKW---VNA 72 (183)
Q Consensus 3 ~~~~~~~~~~~~~~~~~------~~~e~~~~~~~~-~vE~~v~~~ly~~if~~~~~~~~~~D~~l~~~i~~l~~---i~~ 72 (183)
.|++.+++.|-++.--. ..++.++|.+.+ ++.+.|...+-..+.... .....+|-.++..=..++. -.+
T Consensus 310 q~lt~~k~yL~qs~e~~~~v~~~~~s~~~leavlEs~Lhk~vLkPlkp~l~~~l-~~~h~~dGsl~~l~en~~vvr~~~~ 388 (651)
T KOG2320|consen 310 QALTRRKNYLSQSPELDTPVQPSLLSETPLEAVLESALHKSVLKPLKPNLSAQL-PPVHSKDGSLQQLKENQDVVRAANP 388 (651)
T ss_pred HHHHHhHHHHhhcCCCCCCccccccCcchHHHHHHHHHHHhhccccchhHhhhc-chhhhhccHHHHHhcccceecccCc
Confidence 35555566665542221 224455555443 355566655555555443 2345667777666555543 368
Q ss_pred CCCcccccccchhHHHHHHHHHHHHhcCcCCCChHHHHHHHHHHHHHHHHHHhccC--CCCChhhhHHHHHHHHHhcCcc
Q psy10331 73 KHLDCGIEETNATVRDLVYNSMTKLLEMDSVRAPQDKLACVVACCRDIFLLLQSSV--GPASADEFLPALIFLVLKMNPA 150 (183)
Q Consensus 73 ~~l~i~~~~~~~~~~~~~~~ai~~L~~i~~~~tP~~KL~~l~~~~~~I~~~~~~~~--~~~~ADdlLPiliyviika~~~ 150 (183)
..||+--.... ...+++....+..|.+.++|..|+..++++|+.|+..+...+ ...|||||+|+|.||+.|++.+
T Consensus 389 ~~lG~~~~~Ps---~~~mEqvk~k~~~m~r~YSP~kkl~~Llk~ckLly~~~~~~~~g~~~gaDdflP~lsyvla~s~~~ 465 (651)
T KOG2320|consen 389 TALGVFLSTPS---DVLMEQVKQKFTAMQRRYSPSKKLHALLKACKLLYAGMGGDNEGLAYGADDFLPVLSYVLARSDLQ 465 (651)
T ss_pred cccceeccCCc---HHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHhccCCCCCCCCchhhHHHHHHHHHhcchh
Confidence 88887422222 235677788899999999999999999999999999988433 7899999999999999999999
Q ss_pred chhHHHHHHHHccccccccCcchhhHHhhhcCC
Q psy10331 151 RLKSNIHFVTRFCNANRLMSGEAGYFFTNLVSI 183 (183)
Q Consensus 151 ~l~s~i~yI~~f~~~~~l~~gE~~Y~lt~~~aA 183 (183)
.+..+++||.+|..|+ +..||.|||+|++-+|
T Consensus 466 e~~~e~eYM~ELLdP~-l~~geggYYLTs~~~a 497 (651)
T KOG2320|consen 466 ELLTEAEYMMELLDPD-LLSGEGGYYLTSLYGA 497 (651)
T ss_pred cchHHHHHHHHhcChh-hhcCccchhHHHHHHH
Confidence 9999999999999997 5699999999998765
No 4
>KOG2319|consensus
Probab=99.44 E-value=1.4e-12 Score=114.57 Aligned_cols=157 Identities=29% Similarity=0.439 Sum_probs=138.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcCCCCCCChHhHHHHHHHHHhhhhCCCCCCcccccccchhHHHHHHHHHHHHhcCcCCC
Q psy10331 25 DRELLLDYVEKYSMISLYPLLFCPPFTSDEDQDLEIQERIRQLKWVNAKHLDCGIEETNATVRDLVYNSMTKLLEMDSVR 104 (183)
Q Consensus 25 ~~~~~~~~vE~~v~~~ly~~if~~~~~~~~~~D~~l~~~i~~l~~i~~~~l~i~~~~~~~~~~~~~~~ai~~L~~i~~~~ 104 (183)
+.......++.....+++..+++.....+.+.|..++..++.++++++..++|+.....+.+......+.+.+..|+...
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~d~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~ 253 (477)
T KOG2319|consen 174 GENKLYFTCEDSAEAFISNILLDSETSDDAEFDLALSKAIRRLQGLTSQMLDIPVLEQIPELSKRVALASQRLALIRELL 253 (477)
T ss_pred HHHHHHHHHhhHHHHHHhccccCcccCCHHHHhHHHHHHHHhhcccchhhccccccccccchhHHHHHHHHHHHHHHHhh
Confidence 44556677888999999999999988888999999999999999999999999876655444556677889999999999
Q ss_pred ChHH-HHHHHHHHHHHHHHHHhccC-CCCChhhhHHHHHHHHHhcCccchhHHHHHHHHccccccccCcchhhHHhhhcC
Q psy10331 105 APQD-KLACVVACCRDIFLLLQSSV-GPASADEFLPALIFLVLKMNPARLKSNIHFVTRFCNANRLMSGEAGYFFTNLVS 182 (183)
Q Consensus 105 tP~~-KL~~l~~~~~~I~~~~~~~~-~~~~ADdlLPiliyviika~~~~l~s~i~yI~~f~~~~~l~~gE~~Y~lt~~~a 182 (183)
+|++ |..|..+|++.|.+.+.... ...++|.|+|.++|.+++.+++++.++++|+.+|+.++++ .|+.+|+..++.+
T Consensus 254 ~~~~~~~~~~~~~~~~~f~~l~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~s~~~~~~~~~~~e~~-~~~~~~~~~~~~~ 332 (477)
T KOG2319|consen 254 TPRDKKEACALNCEKPIFSALKITDDENAGADKFLPSLIYCLLKAQGPHLVSNIQYILRFRAPERL-SGEEKYYLFTYAC 332 (477)
T ss_pred cchhhhHHHHHHHHHHHHhhhhccchhhhhHHhhhHHHHHHHHhcCCcccccHHHHHHhcccHHhh-hccchhhhhhhhh
Confidence 9999 79999999999999988776 7889999999999999999999999999999999999986 6888888777654
No 5
>KOG2319|consensus
Probab=99.26 E-value=8e-13 Score=116.01 Aligned_cols=177 Identities=27% Similarity=0.410 Sum_probs=147.7
Q ss_pred ChhHHHHHHHHHhcCcccCCCCHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCChHhHHHHHHHHHhhh-hCCCCCCcccc
Q psy10331 1 MQNFYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMISLYPLLFCPPFTSDEDQDLEIQERIRQLK-WVNAKHLDCGI 79 (183)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~vE~~v~~~ly~~if~~~~~~~~~~D~~l~~~i~~l~-~i~~~~l~i~~ 79 (183)
|+++++....-...++-|+...+++.+......+.++++...+.++. ...+....|...+.+....+ ..+++..+...
T Consensus 7 ~~~~~~~~~s~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~e 85 (477)
T KOG2319|consen 7 VQSTVAKYSSVFLNHPLWKISTDEELDEARDGLEKYVMTALFQRVFA-SDVEEVDADVLNEIDDSSLQTIISPEASGDQE 85 (477)
T ss_pred ccccccchhhhhccccccccchhhhhhhccccccchhcccccccCcc-hhhhhhhhHhhhccccchhhhhcCHhhccCcc
Confidence 46667777777788899999999999999999999999999999998 33444555666666655554 55777777765
Q ss_pred cccchhHHHHHHHHHHHHhcCcCCCChHHHHHHHHHHHHHHHHHHhccC-CCCChhhhHHHHHHHHHhcCccchhHHHHH
Q psy10331 80 EETNATVRDLVYNSMTKLLEMDSVRAPQDKLACVVACCRDIFLLLQSSV-GPASADEFLPALIFLVLKMNPARLKSNIHF 158 (183)
Q Consensus 80 ~~~~~~~~~~~~~ai~~L~~i~~~~tP~~KL~~l~~~~~~I~~~~~~~~-~~~~ADdlLPiliyviika~~~~l~s~i~y 158 (183)
.... ...+..|+.++..++.+.+|.+|+.|++.+++.+......+. .+.-+|+++|.++|+..+++++++++++.|
T Consensus 86 ~~~~---~~~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (477)
T KOG2319|consen 86 TFNQ---NTSIENAQSELEKIELYKAPHDKLQCILSQCKLIFELLLKSSIAPNQASQFLPVLIFVTKKANPQQFHSNVLY 162 (477)
T ss_pred chhh---ccchhhhcccccccccccCchhHHHHHHHHHhhhhHHHHHhhcccccccccccceeeeccccCchhhhhhHHH
Confidence 5433 345778999999999999999999999999999998877554 444499999999999999999999999999
Q ss_pred HHHccccccccCcchhhHHhhhcC
Q psy10331 159 VTRFCNANRLMSGEAGYFFTNLVS 182 (183)
Q Consensus 159 I~~f~~~~~l~~gE~~Y~lt~~~a 182 (183)
..+++....++ |+.+|++|++..
T Consensus 163 ~~~~r~~~~l~-~~~~~~~~~~~~ 185 (477)
T KOG2319|consen 163 EMRNRREGPLE-GENKLYFTCEDS 185 (477)
T ss_pred HHHHHHhhhHH-HHHHHHHHHhhH
Confidence 99999999887 999999999864
No 6
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=37.26 E-value=87 Score=24.36 Aligned_cols=34 Identities=21% Similarity=0.251 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHhcCcccCCCCHHHHHHHHHHHHHHHHH
Q psy10331 2 QNFYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMI 39 (183)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~vE~~v~~ 39 (183)
|+|+..+...|++ ++.+|++.+.+...+...+++
T Consensus 7 ~~y~~~l~~~L~~----~~~~e~~~e~~L~eil~~Lle 40 (206)
T PF06570_consen 7 QEYIFDLRKYLRS----SGVSEEEIEELLEEILPHLLE 40 (206)
T ss_pred HHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHHHHH
Confidence 6899999999976 567888888777666555554
No 7
>PF08038 Tom7: TOM7 family; InterPro: IPR012621 This family consists of TOM7 family of mitochondrial import receptors. TOM7 forms part of the translocase of the outer mitochondrial membrane (TOM) complex and it appears to function as a modulator of the dynamics of the mitochondrial protein transport machinery by promoting the dissociation of subunits of the outer membrane translocase [].; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=35.82 E-value=29 Score=20.21 Aligned_cols=19 Identities=26% Similarity=0.735 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHhc--Cc-cchh
Q psy10331 135 EFLPALIFLVLKM--NP-ARLK 153 (183)
Q Consensus 135 dlLPiliyviika--~~-~~l~ 153 (183)
-|+|+.+|+=.++ +| |++.
T Consensus 18 GfIP~IlylG~~~~~~p~Psl~ 39 (42)
T PF08038_consen 18 GFIPLILYLGFRSGADPMPSLI 39 (42)
T ss_pred eehHHHHHHhhccCCCCCCcHH
Confidence 3899999998887 56 6554
No 8
>PRK07668 hypothetical protein; Validated
Probab=29.69 E-value=1.4e+02 Score=24.49 Aligned_cols=35 Identities=14% Similarity=0.150 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHhcCcccCCCCHHHHHHHHHHHHHHHHHh
Q psy10331 2 QNFYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMIS 40 (183)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~vE~~v~~~ 40 (183)
|+|+..+...|+. ++.+|++.+.+.+.++..+.+.
T Consensus 7 eefl~~L~~yL~~----~glseeeieeiL~Ei~~hLlEg 41 (254)
T PRK07668 7 RKFLDDTRVYLIA----KGIKEEDIESFLEDAELHLIEG 41 (254)
T ss_pred HHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHHHHHH
Confidence 6889999999975 4678899888888887777765
No 9
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=28.89 E-value=2.3e+02 Score=20.70 Aligned_cols=68 Identities=19% Similarity=0.169 Sum_probs=44.1
Q ss_pred HHHHHHHhcCcCCCChHHHHHHHHHHHHHHHHHHhccCCCCChhhhHHHHHHHHHhcCccchhHHHHHHHHcccccc
Q psy10331 91 YNSMTKLLEMDSVRAPQDKLACVVACCRDIFLLLQSSVGPASADEFLPALIFLVLKMNPARLKSNIHFVTRFCNANR 167 (183)
Q Consensus 91 ~~ai~~L~~i~~~~tP~~KL~~l~~~~~~I~~~~~~~~~~~~ADdlLPiliyviika~~~~l~s~i~yI~~f~~~~~ 167 (183)
..+.+.|++-+..-||.-. .|.+.+..+.+.++|++++-.+.=---...++..+-++.+......-.+
T Consensus 6 ~~~~~~lk~~glr~T~qR~---------~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv~~ 73 (145)
T COG0735 6 EDAIERLKEAGLRLTPQRL---------AVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLVHR 73 (145)
T ss_pred HHHHHHHHHcCCCcCHHHH---------HHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCEEE
Confidence 4577888888887887664 4555666555669999964443332223445667788888887765433
No 10
>TIGR03092 SASP_sspI small, acid-soluble spore protein I. This protein family is restricted to a subset of endospore-forming bacteria such as Bacillus subtilis, all of which are in the Firmicutes (low-GC Gram-positive) lineage. It is a minor SASP (small, acid-soluble spore protein) designated SspI. The gene in Bacillus subtilis previously was designated ysfA.
Probab=28.32 E-value=46 Score=21.29 Aligned_cols=21 Identities=14% Similarity=0.414 Sum_probs=18.1
Q ss_pred cccCCCCHHHHHHHHHHHHHH
Q psy10331 16 KLYADVSAQDRELLLDYVEKY 36 (183)
Q Consensus 16 ~~~~~~~e~~~~~~~~~vE~~ 36 (183)
..|+++++++.+.+...+|+-
T Consensus 43 ~~W~~~~~~ek~~m~~~l~~~ 63 (65)
T TIGR03092 43 AIWKHANEQEKDEMLETLEQG 63 (65)
T ss_pred HHHHhcCHHHHHHHHHHHHHh
Confidence 579999999999998888864
No 11
>smart00099 btg1 tob/btg1 family. The tob/btg1 is a family of proteins that inhibit cell proliferation.
Probab=27.10 E-value=2.3e+02 Score=20.01 Aligned_cols=68 Identities=10% Similarity=0.158 Sum_probs=45.7
Q ss_pred HHHHHHHHHhcCcccCCCCHHHHHHHHHHHHHHHHHhhhhhhcCCCCC----------CChHhHHHHHHHHHhhhhCCCC
Q psy10331 4 FYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMISLYPLLFCPPFT----------SDEDQDLEIQERIRQLKWVNAK 73 (183)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~vE~~v~~~ly~~if~~~~~----------~~~~~D~~l~~~i~~l~~i~~~ 73 (183)
-.+.+...|+.+ ..++.++++...+.++..+..+.-.+ |.|... .+...|..+.+-.+. ..++.+
T Consensus 8 av~Fl~~~l~~~---~~l~~~~v~~F~~~L~~~L~~~y~~H-WyP~~P~kGqayRCIrIn~~~Dp~l~~Aa~~-sGl~~~ 82 (108)
T smart00099 8 AVNFITSLLRKH---NKLSKRRVEIFAEKLTRLLKEKYKNH-WYPEKPYKGSGFRCIRINQKVDPVIEQACKE-SGLDID 82 (108)
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHhcC-CCCCCCCCCcceEEEEECCcCCHHHHHHHHH-hCCCHH
Confidence 344455555433 67899999999999999999998877 555332 225667777766443 345555
Q ss_pred CCc
Q psy10331 74 HLD 76 (183)
Q Consensus 74 ~l~ 76 (183)
+|+
T Consensus 83 ~l~ 85 (108)
T smart00099 83 DLG 85 (108)
T ss_pred HHH
Confidence 555
No 12
>PF09045 L27_2: L27_2; InterPro: IPR015132 The L27_2 domain is a protein-protein interaction domain capable of organising scaffold proteins into supramolecular assemblies by formation of heteromeric L27_2 domain complexes. L27_2 domain-mediated protein assemblies have been shown to play essential roles in cellular processes including asymmetric cell division, establishment and maintenance of cell polarity, and clustering of receptors and ion channels. Members of this family form specific heterotetrameric complexes, in which each domain contains three alpha-helices. The two N-terminal helices of each L27_2 domain pack together to form a tight, four-helix bundle in the heterodimer, whilst the third helix of each L27_2 domain forms another four-helix bundle that assembles the two units of the heterodimer into a tetramer []. ; PDB: 3UIT_A 1VF6_B.
Probab=25.31 E-value=1.8e+02 Score=18.16 Aligned_cols=36 Identities=8% Similarity=0.122 Sum_probs=25.3
Q ss_pred HHHHHHHHHhcCcccCCCCHHHHHHHHHHHHHHHHHhh
Q psy10331 4 FYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMISL 41 (183)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~vE~~v~~~l 41 (183)
-+++++.||.+...|. +++.+..++..++.-++.+|
T Consensus 8 ~lerlq~KL~~rGd~s--~~e~L~~l~~~LqSPLF~~i 43 (58)
T PF09045_consen 8 ALERLQAKLKERGDTS--HSEKLSLLKDTLQSPLFNQI 43 (58)
T ss_dssp HHHHHHHHHHHCT--T--THHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHccCcc--cHHHHHHHHHHHhChHHHHH
Confidence 3678888999887776 56778888888887777665
No 13
>PRK02955 small acid-soluble spore protein SspI; Provisional
Probab=24.80 E-value=52 Score=21.24 Aligned_cols=21 Identities=10% Similarity=0.384 Sum_probs=17.9
Q ss_pred cccCCCCHHHHHHHHHHHHHH
Q psy10331 16 KLYADVSAQDRELLLDYVEKY 36 (183)
Q Consensus 16 ~~~~~~~e~~~~~~~~~vE~~ 36 (183)
..|+++++.+.+.+...+|+-
T Consensus 46 ~~W~~~~~~ek~~m~~~l~~~ 66 (68)
T PRK02955 46 VIWKNADENEKDEMLETLEQG 66 (68)
T ss_pred HHHHhcCHHHHHHHHHHHHHh
Confidence 579999999999998888864
No 14
>PF04878 Baculo_p48: Baculovirus P48 protein; InterPro: IPR006962 This family comprises the Baculovirus P48 proteins. They contain two possible membrane-spanning domains and a cysteine-rich domain that are conserved in all of the proteins. The Bombyx mori (Silk moth) nuclear polyhedrosis virus protein, O92463 from SWISSPROT, has been described as a putative DNA helicase.
Probab=23.78 E-value=59 Score=27.98 Aligned_cols=49 Identities=22% Similarity=0.333 Sum_probs=30.8
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHhccC--CCCChhhh------HHHHHHHHHhcCcc
Q psy10331 102 SVRAPQDKLACVVACCRDIFLLLQSSV--GPASADEF------LPALIFLVLKMNPA 150 (183)
Q Consensus 102 ~~~tP~~KL~~l~~~~~~I~~~~~~~~--~~~~ADdl------LPiliyviika~~~ 150 (183)
...+|..|+.|+.-=+.=+..++..-. -.-|=|-| +|+++||++|+.-.
T Consensus 124 ~~C~~~~kl~Cl~Ck~~YlS~~is~lD~~iQ~GWDiFlRPM~GlPLllfvl~kTd~~ 180 (374)
T PF04878_consen 124 DKCSPVNKLECLTCKINYLSEAISTLDSGIQDGWDIFLRPMFGLPLLLFVLFKTDFS 180 (374)
T ss_pred hhcccccccchhhhhHHHHHHHHHHHHhhhhccHHHHHHHHhhhHHHHHHhhccccC
Confidence 345567888888755555544443211 12344555 69999999999874
No 15
>KOG3910|consensus
Probab=22.62 E-value=83 Score=28.36 Aligned_cols=37 Identities=24% Similarity=0.261 Sum_probs=30.5
Q ss_pred HHHHHHHHhcCcC----CCChHHHHHHHHHHHHHHHHHHhc
Q psy10331 90 VYNSMTKLLEMDS----VRAPQDKLACVVACCRDIFLLLQS 126 (183)
Q Consensus 90 ~~~ai~~L~~i~~----~~tP~~KL~~l~~~~~~I~~~~~~ 126 (183)
+.+|.+||.+|.. ..-|+-||-+|-.|+..|+++-++
T Consensus 541 INeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQ 581 (632)
T KOG3910|consen 541 INEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQ 581 (632)
T ss_pred HHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHH
Confidence 5679999998864 345999999999999999987553
Done!