Query psy10331
Match_columns 183
No_of_seqs 119 out of 613
Neff 8.1
Searched_HMMs 29240
Date Fri Aug 16 15:16:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10331.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10331hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ot3_A RAB5 GDP/GTP exchange f 100.0 2.6E-48 9E-53 316.7 18.0 180 1-183 59-239 (274)
2 2efe_A Similarity to vacuolar 100.0 1.7E-48 5.9E-53 316.9 15.0 178 1-183 52-235 (267)
3 2es9_A Putative cytoplasmic pr 23.6 1.6E+02 0.0056 19.4 5.1 46 88-136 11-57 (115)
4 4ets_A Ferric uptake regulatio 22.6 2.1E+02 0.007 20.2 6.1 70 89-167 16-87 (162)
5 1vf6_A PALS-1, PALS1-associate 22.1 1.1E+02 0.0038 19.6 3.6 36 4-41 8-43 (83)
6 2p1h_A APAF-1, apoptotic prote 20.2 1.5E+02 0.0053 18.6 4.3 49 96-156 41-89 (94)
7 3ggz_E Vacuolar protein-sortin 18.3 90 0.0031 15.9 2.1 17 52-68 12-28 (29)
8 3u43_A Colicin-E2 immunity pro 18.2 2.1E+02 0.0073 18.6 5.6 44 3-50 14-58 (94)
9 1g92_A Poneratoxin, PAC-TX; ne 16.3 42 0.0014 16.1 0.5 17 136-152 1-17 (26)
10 1zl8_A LIN-7; heterodimer, alp 14.1 2.1E+02 0.0071 16.6 3.2 27 90-116 9-36 (53)
No 1
>2ot3_A RAB5 GDP/GTP exchange factor; rabex-5, VPS9 domain, vesicular traffic, protein transport; 2.10A {Homo sapiens} SCOP: a.222.1.1 PDB: 1txu_A
Probab=100.00 E-value=2.6e-48 Score=316.70 Aligned_cols=180 Identities=48% Similarity=0.867 Sum_probs=167.8
Q ss_pred ChhHHHHHHHHHhcCcccCCCCHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCChHhHHHHHHHHHhhhhCCCCCCccccc
Q psy10331 1 MQNFYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMISLYPLLFCPPFTSDEDQDLEIQERIRQLKWVNAKHLDCGIE 80 (183)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~vE~~v~~~ly~~if~~~~~~~~~~D~~l~~~i~~l~~i~~~~l~i~~~ 80 (183)
||+|+..+.++|..+ |+. ++++++.++++||+|||++||+.+|++..+.+..+|..++++|+.|++++|+||||+.+
T Consensus 59 v~~f~~~~~~~l~~~--~~~-s~~~~~~~~~~iEk~v~~~ly~~lf~~~~~~~~~~D~~l~~ki~~L~~i~~~~L~I~~~ 135 (274)
T 2ot3_A 59 AQDFYHNVAERMQTR--GKV-PPERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRALRWVTPQMLCVPVN 135 (274)
T ss_dssp HHHHHHHHHHHHHST--TCC-CHHHHHHHHHHHHHHHHHHHHHHHSSCTTSSHHHHHHHHHHHHHHTTTCCTTTTTCCCC
T ss_pred HHHHHHHHHHHHHHH--hcc-CHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHcCCCHHHcCCCcc
Confidence 689999999999987 875 67899999999999999999999999987778899999999999999999999999987
Q ss_pred ccchhHHHHHHHHHHHHhcCcCCCChHHHHHHHHHHHHHHHHHHhccC-CCCChhhhHHHHHHHHHhcCccchhHHHHHH
Q psy10331 81 ETNATVRDLVYNSMTKLLEMDSVRAPQDKLACVVACCRDIFLLLQSSV-GPASADEFLPALIFLVLKMNPARLKSNIHFV 159 (183)
Q Consensus 81 ~~~~~~~~~~~~ai~~L~~i~~~~tP~~KL~~l~~~~~~I~~~~~~~~-~~~~ADdlLPiliyviika~~~~l~s~i~yI 159 (183)
...+++.+.|..|+++|++|+.++||+|||.||++||+.|++.++.+. .++|||||||+||||||||+||+|.||++||
T Consensus 136 ~~~p~~~~~~~~A~~eL~~i~~~~sP~dKL~~l~~~~k~I~~~l~~~~~~~~~ADd~LP~Liyvvika~~~~l~s~l~yI 215 (274)
T 2ot3_A 136 EDIPEVSDMVVKAITDIIEMDSKRVPRDKLACITKCSKHIFNAIKITKNEPASADDFLPTLIYIVLKGNPPRLQSNIQYI 215 (274)
T ss_dssp TTSHHHHHHHHHHHHHHHHGGGCCSHHHHHHHHHHHHHHHHHHHHHHHSSCBCHHHHHHHHHHHHHHHCCTTHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCcchHHHHHHHH
Confidence 655556677899999999999999999999999999999999987664 6899999999999999999999999999999
Q ss_pred HHccccccccCcchhhHHhhhcCC
Q psy10331 160 TRFCNANRLMSGEAGYFFTNLVSI 183 (183)
Q Consensus 160 ~~f~~~~~l~~gE~~Y~lt~~~aA 183 (183)
++|+++++++.||.|||||||+||
T Consensus 216 ~~F~~~~~l~~GE~gY~lttl~aA 239 (274)
T 2ot3_A 216 TRFCNPSRLMTGEDGYYFTNLCCA 239 (274)
T ss_dssp HHHSCTTTTTSSHHHHHHHHHHHH
T ss_pred HHHcCcccccCCHHHHHHHHHHHH
Confidence 999999887789999999999987
No 2
>2efe_A Similarity to vacuolar protein sorting-associated VPS9; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_A 2efc_A* 2efh_A*
Probab=100.00 E-value=1.7e-48 Score=316.90 Aligned_cols=178 Identities=30% Similarity=0.572 Sum_probs=164.5
Q ss_pred ChhHHHHHHHHHhcCcccCCCCHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCChHhHHHHHHHHHhh-hhCCCCCCcccc
Q psy10331 1 MQNFYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMISLYPLLFCPPFTSDEDQDLEIQERIRQL-KWVNAKHLDCGI 79 (183)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~vE~~v~~~ly~~if~~~~~~~~~~D~~l~~~i~~l-~~i~~~~l~i~~ 79 (183)
||+|++.+.++|++|+.|+++++++++.+.++||+||+++||+++|++.. .+.++|..+++||+.| ++++|+||||+.
T Consensus 52 v~~f~~~~~~~l~~~~~~~~~~~~~~~~~~e~iEk~v~~~ly~~lf~~~~-~d~~~D~~L~~ki~~l~~~i~~~~L~I~~ 130 (267)
T 2efe_A 52 VQEFFSKMEAAFRAHPLWSGCSEEELDSAGDGLEKYVMTKLFTRVFASNT-EEVIADEKLFQKMSLVQQFISPENLDIQP 130 (267)
T ss_dssp HHHHHHHHHHHHHSCGGGTTCCHHHHHHHHHHHHHHHHHHHHHHHSSCSH-HHHHHHHHHHHHHHHHTTTCCGGGGTCCG
T ss_pred HHHHHHHHHHHHhcCcccccCCHHHHHHHHHHHHHHHHHHHHHHHcCCch-hhHHHHHHHHHHHHHHHccCCHHHcCCCC
Confidence 68999999999999999999999999999999999999999999999974 4788999999999999 699999999997
Q ss_pred cccchhHHHHHHHHHHHHhcCcCCCChHHHHHHHHHHHHHHHHHHhc-----cCCCCChhhhHHHHHHHHHhcCccchhH
Q psy10331 80 EETNATVRDLVYNSMTKLLEMDSVRAPQDKLACVVACCRDIFLLLQS-----SVGPASADEFLPALIFLVLKMNPARLKS 154 (183)
Q Consensus 80 ~~~~~~~~~~~~~ai~~L~~i~~~~tP~~KL~~l~~~~~~I~~~~~~-----~~~~~~ADdlLPiliyviika~~~~l~s 154 (183)
..... ..|..|+++|++|+.++||+|||.||++||+.|++.++. +..++|||||||+||||||||+||+|.|
T Consensus 131 ~~~~~---~~~~~A~~eL~ki~~~~sP~dKl~~l~~~~k~I~~~l~~~~~~~~~~~~~ADd~LP~Liyvvika~~~~L~s 207 (267)
T 2efe_A 131 TFQNE---SSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIASNENAPGADEFLPVLIYVTIKANPPQLHS 207 (267)
T ss_dssp GGCCT---TCSHHHHHHHHTGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHCCTTHHH
T ss_pred ccCCc---ccHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhhccccccCCCChhHHHHHHHHHHHhcCcccHHH
Confidence 66432 357889999999999999999999999999999998863 2278999999999999999999999999
Q ss_pred HHHHHHHccccccccCcchhhHHhhhcCC
Q psy10331 155 NIHFVTRFCNANRLMSGEAGYFFTNLVSI 183 (183)
Q Consensus 155 ~i~yI~~f~~~~~l~~gE~~Y~lt~~~aA 183 (183)
|++||++|++++.+ .||.|||||||+||
T Consensus 208 ~l~yI~~f~~~~~l-~gE~gY~lt~l~aA 235 (267)
T 2efe_A 208 NLLYIQRYRRESKL-VGEAAYFFTNILSA 235 (267)
T ss_dssp HHHHHHHHSCTTTS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcccc-CCHHHHHHHHHHHH
Confidence 99999999999875 89999999999987
No 3
>2es9_A Putative cytoplasmic protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.00A {Salmonella typhimurium} SCOP: a.247.1.1 PDB: 2jn8_A
Probab=23.58 E-value=1.6e+02 Score=19.37 Aligned_cols=46 Identities=13% Similarity=0.177 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhcCcC-CCChHHHHHHHHHHHHHHHHHHhccCCCCChhhh
Q psy10331 88 DLVYNSMTKLLEMDS-VRAPQDKLACVVACCRDIFLLLQSSVGPASADEF 136 (183)
Q Consensus 88 ~~~~~ai~~L~~i~~-~~tP~~KL~~l~~~~~~I~~~~~~~~~~~~ADdl 136 (183)
..+.+|...+.-||. ..+|+..= -.+.+-|+..++.-..|.+|+|.
T Consensus 11 avIdKALDFI~~M~tSas~P~sMd---ESTAKGifKyL~elGvPas~~dv 57 (115)
T 2es9_A 11 TAIEKALDFIGGMNTSASVPHSMD---ESTAKGILKYLHDLGVPVSPEVV 57 (115)
T ss_dssp CHHHHHHHHHHTSCTTCSSCCHHH---HHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhcccccCCCCCCccc---hHHHHHHHHHHHHcCCCCCHHHH
Confidence 346789999999985 56687663 45678899998877788899984
No 4
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=22.63 E-value=2.1e+02 Score=20.19 Aligned_cols=70 Identities=10% Similarity=-0.014 Sum_probs=43.6
Q ss_pred HHHHHHHHHhcCcCCCChHHHHHHHHHHHHHHHHHHhccCCCCChhhhHHHHHHH--HHhcCccchhHHHHHHHHccccc
Q psy10331 89 LVYNSMTKLLEMDSVRAPQDKLACVVACCRDIFLLLQSSVGPASADEFLPALIFL--VLKMNPARLKSNIHFVTRFCNAN 166 (183)
Q Consensus 89 ~~~~ai~~L~~i~~~~tP~~KL~~l~~~~~~I~~~~~~~~~~~~ADdlLPiliyv--iika~~~~l~s~i~yI~~f~~~~ 166 (183)
.+..+.+.|+.-+...||+-+ .|.+.+..+..+++||++.-.+-=- .-..++...+=+|..+.+-.--.
T Consensus 16 ~~~~~~~~L~~~g~r~T~qR~---------~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 16 LLERFKKILRQGGLKYTKQRE---------VLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHHTCCCCHHHH---------HHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHcCCCCCHHHH---------HHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 455677778877888898876 4556666555889999964433211 11123456677777777665443
Q ss_pred c
Q psy10331 167 R 167 (183)
Q Consensus 167 ~ 167 (183)
+
T Consensus 87 ~ 87 (162)
T 4ets_A 87 S 87 (162)
T ss_dssp E
T ss_pred E
Confidence 3
No 5
>1vf6_A PALS-1, PALS1-associated tight junction protein; L27 domain, heterodimer, four-helical bundle, coiled-coil, hydrophobic packing interactions; 2.10A {Homo sapiens} SCOP: a.194.1.1
Probab=22.06 E-value=1.1e+02 Score=19.56 Aligned_cols=36 Identities=0% Similarity=0.087 Sum_probs=26.5
Q ss_pred HHHHHHHHHhcCcccCCCCHHHHHHHHHHHHHHHHHhh
Q psy10331 4 FYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMISL 41 (183)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~vE~~v~~~l 41 (183)
-+.+++.||++...|. +++.+..+++.+..-++++|
T Consensus 8 ~leRLQ~KL~erGd~s--~~ekLs~lk~~LqSPLF~qI 43 (83)
T 1vf6_A 8 VLDRLKMKLQEKGDTS--QNEKLSMFYETLKSPLFNQI 43 (83)
T ss_dssp HHHHHHHHHHHHTCCT--THHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHccccc--hHhHHHHHHHHHhCHHHHHH
Confidence 3678889999887777 57778888887776665554
No 6
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=20.16 E-value=1.5e+02 Score=18.56 Aligned_cols=49 Identities=8% Similarity=0.049 Sum_probs=32.8
Q ss_pred HHhcCcCCCChHHHHHHHHHHHHHHHHHHhccCCCCChhhhHHHHHHHHHhcCccchhHHH
Q psy10331 96 KLLEMDSVRAPQDKLACVVACCRDIFLLLQSSVGPASADEFLPALIFLVLKMNPARLKSNI 156 (183)
Q Consensus 96 ~L~~i~~~~tP~~KL~~l~~~~~~I~~~~~~~~~~~~ADdlLPiliyviika~~~~l~s~i 156 (183)
+...|....|+.+|...|+.... .-++.-++.|+..+-++++++|...+
T Consensus 41 ~~e~I~~~~t~~~kar~Lld~l~------------~kG~~af~~F~~aL~~~~~~~La~~L 89 (94)
T 2p1h_A 41 EEEKVRNEPTQQQRAAMLIKMIL------------KKDNDSYVSFYNALLHEGYKDLAALL 89 (94)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHT------------TSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHcCCChHHHHHHHHHHHH------------HcCHHHHHHHHHHHHHcCHHHHHHHH
Confidence 44455556899999888775551 12355567778888888887776544
No 7
>3ggz_E Vacuolar protein-sorting-associated protein 46; novel MIM binding mode, phosphoprotein, coiled coil, endosome, membrane; 3.80A {Saccharomyces cerevisiae}
Probab=18.29 E-value=90 Score=15.87 Aligned_cols=17 Identities=24% Similarity=0.657 Sum_probs=13.8
Q ss_pred CChHhHHHHHHHHHhhh
Q psy10331 52 SDEDQDLEIQERIRQLK 68 (183)
Q Consensus 52 ~~~~~D~~l~~~i~~l~ 68 (183)
...+++..+.+|++.|+
T Consensus 12 ~~eekEDkLAqRLRALR 28 (29)
T 3ggz_E 12 VDDEKEDKLAQRLRALR 28 (29)
T ss_pred ccchhhHHHHHHHHHHc
Confidence 45677889999999886
No 8
>3u43_A Colicin-E2 immunity protein; protein-protein complex, DNAse, high affinity, protein bindi; 1.72A {Escherichia coli} PDB: 2no8_A 2wpt_A
Probab=18.21 E-value=2.1e+02 Score=18.65 Aligned_cols=44 Identities=16% Similarity=0.214 Sum_probs=32.6
Q ss_pred hHHHHHHHHHhcCcccCCCCHHHHHHHHHHHHHHH-HHhhhhhhcCCCC
Q psy10331 3 NFYQTFAKRMENHKLYADVSAQDRELLLDYVEKYS-MISLYPLLFCPPF 50 (183)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~vE~~v-~~~ly~~if~~~~ 50 (183)
+|+..+.+..+.. ..++.+.+.+...+|+.+ ...--+.||.|..
T Consensus 14 Efi~lv~~I~~~~----~~~E~e~d~ll~~fe~iteHP~gSDLIfyP~~ 58 (94)
T 3u43_A 14 EFLEFVKKICRAE----GATEEDDNKLVREFERLTEHPDGSDLIYYPRD 58 (94)
T ss_dssp HHHHHHHHHHHTC----CSSHHHHHHHHHHHHHHHCCTTTTHHHHSCCT
T ss_pred HHHHHHHHHHhcC----CCCHHHHHHHHHHHHHhCCCCCccCeeeeCCC
Confidence 5666666666632 257888999999999998 4445899999864
No 9
>1g92_A Poneratoxin, PAC-TX; neurotoxin, sodium channel inhibitor; NMR {Synthetic} SCOP: j.19.1.2
Probab=16.27 E-value=42 Score=16.11 Aligned_cols=17 Identities=47% Similarity=0.733 Sum_probs=10.2
Q ss_pred hHHHHHHHHHhcCccch
Q psy10331 136 FLPALIFLVLKMNPARL 152 (183)
Q Consensus 136 lLPiliyviika~~~~l 152 (183)
|||++|.--+-..||-+
T Consensus 1 flpllilgsllmtppvi 17 (26)
T 1g92_A 1 FLPLLILGSLLMTPPVI 17 (26)
T ss_dssp CHHHHHHHTCSSSCCTT
T ss_pred CchHHHHHHHhcCcHHH
Confidence 57887765555455543
No 10
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=14.10 E-value=2.1e+02 Score=16.56 Aligned_cols=27 Identities=15% Similarity=0.129 Sum_probs=20.7
Q ss_pred HHHHHHHHhcCcC-CCChHHHHHHHHHH
Q psy10331 90 VYNSMTKLLEMDS-VRAPQDKLACVVAC 116 (183)
Q Consensus 90 ~~~ai~~L~~i~~-~~tP~~KL~~l~~~ 116 (183)
+..|++-|.++.+ ..-|..||.-|.+.
T Consensus 9 v~RaiELle~lq~sgevp~~KL~aLq~V 36 (53)
T 1zl8_A 9 VQRILELMEHVQKTGEVNNAKLASLQQV 36 (53)
T ss_dssp HHHHHHHHHHHGGGSSSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 5568888887754 56799999988765
Done!