RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10331
         (183 letters)



>d2ot3a1 a.222.1.1 (A:139-387) Rab5 GDP/GTP exchange factor
           (Rabex-5) {Human (Homo sapiens), gamma isoform [TaxId:
           9606]}
          Length = 249

 Score =  153 bits (388), Expect = 1e-47
 Identities = 87/183 (47%), Positives = 120/183 (65%), Gaps = 4/183 (2%)

Query: 1   MQNFYQTFAKRMENHKLYADVSAQDRELLLDYVEKYSMISLYPLLFCPPFTSDEDQDLEI 60
            Q+FY   A+RM+       V  +  E ++D +EKY M  LY  +FCP  T DE +DL I
Sbjct: 44  AQDFYHNVAERMQTRG---KVPPERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAI 100

Query: 61  QERIRQLKWVNAKHLDCGIEETNATVRDLVYNSMTKLLEMDSVRAPQDKLACVVACCRDI 120
           Q+RIR L+WV  + L   + E    V D+V  ++T ++EMDS R P+DKLAC+  C + I
Sbjct: 101 QKRIRALRWVTPQMLCVPVNEDIPEVSDMVVKAITDIIEMDSKRVPRDKLACITKCSKHI 160

Query: 121 FLLLQSSVG-PASADEFLPALIFLVLKMNPARLKSNIHFVTRFCNANRLMSGEAGYFFTN 179
           F  ++ +   PASAD+FLP LI++VLK NP RL+SNI ++TRFCN +RLM+GE GY+FTN
Sbjct: 161 FNAIKITKNEPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTN 220

Query: 180 LVS 182
           L  
Sbjct: 221 LCC 223


>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii
           yoelii [TaxId: 73239]}
          Length = 219

 Score = 27.8 bits (61), Expect = 0.73
 Identities = 22/139 (15%), Positives = 46/139 (33%), Gaps = 2/139 (1%)

Query: 29  LLDYV-EKYSMISLYPLLFCPPFTSDEDQDLEIQERIRQLKWVNAKHLDCGIEETNATVR 87
           L  Y+   ++++  +P  F P  T++  +  ++ E   +L            E  +  + 
Sbjct: 24  LYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKLIGFSCNSKESHDKWIE 83

Query: 88  DLVYNSMTKLLEMDSVRAPQDKLACVVACCRDIFLLLQSSVGPASADEFL-PALIFLVLK 146
           D+ Y       E+  V     +LA  +    +    +           F+ P        
Sbjct: 84  DIKYYGKLNKWEIPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATV 143

Query: 147 MNPARLKSNIHFVTRFCNA 165
           + PA    N H + R   +
Sbjct: 144 LYPATTGRNAHEILRVLKS 162


>d1jiha2 e.8.1.7 (A:1-389) DNA polymerase eta {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 389

 Score = 25.6 bits (55), Expect = 3.6
 Identities = 3/28 (10%), Positives = 10/28 (35%)

Query: 14  NHKLYADVSAQDRELLLDYVEKYSMISL 41
           + + Y   S +  ++     +     S+
Sbjct: 127 SLEPYRRESRKALKIFKSACDLVERASI 154


>d1usha1 d.114.1.1 (A:363-550) 5'-nucleotidase (syn. UDP-sugar
           hydrolase), C-terminal domain {Escherichia coli [TaxId:
           562]}
          Length = 188

 Score = 24.2 bits (52), Expect = 8.2
 Identities = 8/28 (28%), Positives = 14/28 (50%)

Query: 13  ENHKLYADVSAQDRELLLDYVEKYSMIS 40
           +N   Y +    D E+L  Y++K S + 
Sbjct: 148 DNKPGYVNTGFIDAEVLKAYIQKSSPLD 175


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.137    0.407 

Gapped
Lambda     K      H
   0.267   0.0442    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 642,430
Number of extensions: 27394
Number of successful extensions: 88
Number of sequences better than 10.0: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 8
Length of query: 183
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 103
Effective length of database: 1,309,196
Effective search space: 134847188
Effective search space used: 134847188
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.8 bits)