BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10334
(314 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O94972|TRI37_HUMAN E3 ubiquitin-protein ligase TRIM37 OS=Homo sapiens GN=TRIM37 PE=1
SV=2
Length = 964
Score = 130 bits (328), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 54/74 (72%), Positives = 65/74 (87%)
Query: 28 ALAEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHMTDLVNCR 87
++AEVFRCFIC+EKLRD LCPHCSKLCC +CIR++LTE+R+QCPHCRA L + +LVNCR
Sbjct: 8 SIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCR 67
Query: 88 WMEEVTQHLDNLQM 101
W EEVTQ LD LQ+
Sbjct: 68 WAEEVTQQLDTLQL 81
>sp|Q6PCX9|TRI37_MOUSE E3 ubiquitin-protein ligase TRIM37 OS=Mus musculus GN=Trim37 PE=2
SV=1
Length = 961
Score = 130 bits (327), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 54/74 (72%), Positives = 65/74 (87%)
Query: 28 ALAEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHMTDLVNCR 87
++AEVFRCFIC+EKLRD LCPHCSKLCC +CIR++LTE+R+QCPHCRA L + +LVNCR
Sbjct: 8 SIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCR 67
Query: 88 WMEEVTQHLDNLQM 101
W EEVTQ LD LQ+
Sbjct: 68 WAEEVTQQLDTLQL 81
>sp|Q9NS91|RAD18_HUMAN E3 ubiquitin-protein ligase RAD18 OS=Homo sapiens GN=RAD18 PE=1
SV=2
Length = 495
Score = 48.1 bits (113), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 25 VSRALAEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHMTDLV 84
V + + ++ RC IC E + P CS C CIR+FL+ ++QCP C ++ DL
Sbjct: 15 VMKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLS-YKTQCPTCCVTVTEPDLK 73
Query: 85 NCRWMEEVTQHLD 97
N R ++E+ + L+
Sbjct: 74 NNRILDELVKSLN 86
>sp|Q9QXK2|RAD18_MOUSE E3 ubiquitin-protein ligase RAD18 OS=Mus musculus GN=Rad18 PE=1
SV=2
Length = 509
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 25 VSRALAEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHMTDLV 84
V + + ++ RC IC E + P CS C CIR+FL+ ++QCP C ++ DL
Sbjct: 15 VMKTIDDLLRCGICFEYFNIAVIIPQCSHNYCSLCIRKFLS-YKTQCPTCCVAVTEPDLR 73
Query: 85 NCRWMEEVTQHLD 97
N R ++E+ + ++
Sbjct: 74 NNRLLDELVKSMN 86
>sp|Q9FF61|SM3L1_ARATH Putative SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A member 3-like 1
OS=Arabidopsis thaliana GN=At5g05130 PE=2 SV=1
Length = 881
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 30 AEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHMTDLVNC 86
E F C ICI + + C+ + C ACI Q L + CP CR SL +DL N
Sbjct: 630 GEDFDCPICISPPTNI-IITRCAHIFCRACILQTLQRSKPLCPLCRGSLTQSDLYNA 685
>sp|Q03270|PO12_NASVI Retrovirus-related Pol polyprotein from type-1 retrotransposable
element R1 2 (Fragment) OS=Nasonia vitripennis PE=4 SV=1
Length = 410
Score = 40.8 bits (94), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 56/136 (41%), Gaps = 13/136 (9%)
Query: 156 DLAAKQAQTSPDAEILNVTHTDLKSFFKKIPSEKWKLTWSYETCDNKLKNIKQDTKYWAS 215
L+ + + E+ + + L+ + E W+ W +D KY A
Sbjct: 237 GLSMNEMDVVKNEEVESSSVIKLERLVDERVYEIWQERWVVSMKGRVTARFIKDVKY-AG 295
Query: 216 STRNIRKEEVVLTRLRIGHSLLT---HKFLLDRQEPPMCNDCQVQITIKQFKHILCDCPL 272
+R+ + V+ L GH L HK L MC D + ++H+LC C +
Sbjct: 296 RSRSFEPDRWVVNIL-TGHGTLNAFLHKRGLSESASCMCGDVS-----EDWEHVLCRCSM 349
Query: 273 YQSFRRKNNLTELTLS 288
Y+SFR NL E+ ++
Sbjct: 350 YESFR---NLDEMGVT 362
>sp|O74747|RAD18_SCHPO Postreplication repair E3 ubiquitin-protein ligase rad18
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rhp18 PE=3 SV=1
Length = 387
Score = 38.9 bits (89), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 27 RALAEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHMTDLVNC 86
+ L RC IC E R L CS C CIR +L E CP CRA + L
Sbjct: 21 KGLDSSLRCLICHEYFR-APLITSCSHTFCSFCIRDYL-REHPMCPACRAPEQESRLRKN 78
Query: 87 RWMEEV 92
+EE+
Sbjct: 79 TILEEI 84
>sp|Q99942|RNF5_HUMAN E3 ubiquitin-protein ligase RNF5 OS=Homo sapiens GN=RNF5 PE=1 SV=1
Length = 180
Score = 37.4 bits (85), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 42/113 (37%), Gaps = 6/113 (5%)
Query: 28 ALAEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLT--EERSQCPHCRASLHMTDLVN 85
F C IC+E R+ + C L C C+ Q+L ER +CP C+A + +V
Sbjct: 20 GAGATFECNICLETAREA-VVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISREKVVP 78
Query: 86 CRWMEEVTQHLDNLQMNSKSSLQTYQRLFPNSTLCLNVKNLLSELKLKYGLSI 138
+Q + ++ + Q QR P S +G+
Sbjct: 79 L--YGRGSQKPQDPRLKTPPRPQG-QRPAPESRGGFQPFGDTGGFHFSFGVGA 128
>sp|Q14527|HLTF_HUMAN Helicase-like transcription factor OS=Homo sapiens GN=HLTF PE=1
SV=2
Length = 1009
Score = 37.0 bits (84), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 35 CFICIEKLRDTHLCPHCSKLCCLACIRQFLTEER--SQCPHCRASLHMTDLVNC 86
C IC++ L + HC+ + C CI Q + E+ ++CP CR +H +L+ C
Sbjct: 760 CAICLDSLT-VPVITHCAHVFCKPCICQVIQNEQPHAKCPLCRNDIHEDNLLEC 812
>sp|Q00940|PEX10_PICAN Peroxisome biogenesis factor 10 OS=Pichia angusta GN=PEX10 PE=3
SV=1
Length = 295
Score = 36.6 bits (83), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 35 CFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHMTDLVNCR 87
C +C+ ++D C C + C C+ ++ +ER +CP CRA + + L+ R
Sbjct: 245 CMLCLSPMKDPS-CGECGHVFCWKCVLDWV-KERQECPLCRAKMRESQLLPLR 295
>sp|Q62191|RO52_MOUSE E3 ubiquitin-protein ligase TRIM21 OS=Mus musculus GN=Trim21 PE=1
SV=1
Length = 470
Score = 36.2 bits (82), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 20 STTSHVS-RALAEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASL 78
STTS +S + E C IC++ + + + C C CI + S CP CR
Sbjct: 4 STTSKMSLEKMWEEVTCSICLDPMVEP-MSIECGHCFCKECIFEVGKNGGSSCPECRQQF 62
Query: 79 HMTDLVNCRWMEEVTQHLDNLQMNSKSSLQ 108
+ +L R + + ++L + N+K S Q
Sbjct: 63 LLRNLRPNRHIANMVENLKQIAQNTKKSTQ 92
>sp|Q6CTZ8|RAD18_KLULA Postreplication repair E3 ubiquitin-protein ligase RAD18
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=RAD18
PE=3 SV=1
Length = 427
Score = 35.8 bits (81), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 16 RLFISTTSHVSRALAEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCR 75
R F+ T+ L + RC IC + L+ + L P C C CIR++L +E S+CP C
Sbjct: 13 RDFLHTSVPQLTDLDSLLRCHICKDFLKASVLTP-CGHSFCSICIRKYLQKE-SKCPLCL 70
Query: 76 ASL 78
+ L
Sbjct: 71 SDL 73
>sp|Q5M807|RNF5_RAT E3 ubiquitin-protein ligase RNF5 OS=Rattus norvegicus GN=Rnf5 PE=2
SV=1
Length = 180
Score = 35.8 bits (81), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 43/113 (38%), Gaps = 6/113 (5%)
Query: 28 ALAEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLT--EERSQCPHCRASLHMTDLVN 85
+ F C IC+E R+ + C L C C+ Q+L +R +CP C+A + +V
Sbjct: 20 GASATFECNICLETAREA-VVSVCGHLYCWPCLHQWLETRPDRQECPVCKAGISREKVVP 78
Query: 86 CRWMEEVTQHLDNLQMNSKSSLQTYQRLFPNSTLCLNVKNLLSELKLKYGLSI 138
+Q + ++ + Q QR P S +G+
Sbjct: 79 L--YGRGSQKPQDPRLKTPPRPQG-QRPAPESRGGFQPFGDAGGFHFSFGVGA 128
>sp|O35445|RNF5_MOUSE E3 ubiquitin-protein ligase RNF5 OS=Mus musculus GN=Rnf5 PE=1 SV=1
Length = 180
Score = 35.8 bits (81), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 43/113 (38%), Gaps = 6/113 (5%)
Query: 28 ALAEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLT--EERSQCPHCRASLHMTDLVN 85
+ F C IC+E R+ + C L C C+ Q+L +R +CP C+A + +V
Sbjct: 20 GASATFECNICLETAREA-VVSVCGHLYCWPCLHQWLETRPDRQECPVCKAGISREKVVP 78
Query: 86 CRWMEEVTQHLDNLQMNSKSSLQTYQRLFPNSTLCLNVKNLLSELKLKYGLSI 138
+Q + ++ + Q QR P S +G+
Sbjct: 79 L--YGRGSQKPQDPRLKTPPRPQG-QRPAPESRGGFQPFGDAGGFHFSFGVGA 128
>sp|P29836|ICP0_BHV1K E3 ubiquitin-protein ligase ICP0 OS=Bovine herpesvirus 1.2
(strain K22) GN=BICP0 PE=3 SV=1
Length = 676
Score = 35.4 bits (80), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 28 ALAEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASLH 79
A E+ C IC++ + C CLACIR++L E R CP C+A +
Sbjct: 6 AAPELGSCCICLDAITGAARALPCLHAFCLACIRRWL-EGRPTCPLCKAPVQ 56
>sp|Q95216|HLTF_RABIT Helicase-like transcription factor OS=Oryctolagus cuniculus GN=HLTF
PE=1 SV=1
Length = 1005
Score = 35.4 bits (80), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 35 CFICIEKLRDTHLCPHCSKLCCLACIRQFLTEER--SQCPHCRASLHMTDLVNC 86
C IC++ L + HC+ + C CI Q + E+ ++CP CR +H +L+ C
Sbjct: 757 CAICLDSLT-VPVITHCAHVFCKPCICQCIQNEQPHAKCPLCRNDIHGDNLLEC 809
>sp|Q6PCN7|HLTF_MOUSE Helicase-like transcription factor OS=Mus musculus GN=Hltf PE=1
SV=1
Length = 1003
Score = 35.4 bits (80), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 35 CFICIEKLRDTHLCPHCSKLCCLACIRQFLTEER--SQCPHCRASLHMTDLVNC 86
C IC++ L + HC+ + C CI Q + E+ ++CP CR +H +L+ C
Sbjct: 754 CAICLDSLT-FPVITHCAHVFCKPCICQVIHSEQPHAKCPLCRNEIHGDNLLEC 806
>sp|Q6FPI4|RAD18_CANGA Postreplication repair E3 ubiquitin-protein ligase RAD18
OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM
3761 / NBRC 0622 / NRRL Y-65) GN=RAD18 PE=3 SV=1
Length = 411
Score = 35.4 bits (80), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 27 RALAEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHMTDLVNC 86
+ L ++ RC IC + L++ L P C C CIR +L+ E +CP C L + L +
Sbjct: 19 QELDDLLRCHICKDFLKNPVLTP-CGHTFCSLCIRGYLSNE-PKCPLCLHELRESMLRSE 76
Query: 87 RWMEEVTQ 94
+ E+T+
Sbjct: 77 YLVNEITE 84
>sp|P29128|ICP0_BHV1J E3 ubiquitin-protein ligase ICP0 OS=Bovine herpesvirus 1.1
(strain Jura) GN=BICP0 PE=3 SV=1
Length = 676
Score = 35.4 bits (80), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 28 ALAEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASLH 79
A E+ C IC++ + C CLACIR++L E R CP C+A +
Sbjct: 6 AAPELGSCCICLDAITGAARALPCLHAFCLACIRRWL-EGRPTCPLCKAPVQ 56
>sp|Q7X843|ATL48_ARATH RING-H2 finger protein ATL48 OS=Arabidopsis thaliana GN=ATL48 PE=2
SV=2
Length = 349
Score = 35.4 bits (80), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 6 GLSTIEVLFLRLFISTTSHVSRALAEVFRCFICIEKLRDT---HLCPHCSKLCCLACIRQ 62
GL + L +F+ +V+ +L + F C +C+ + DT L P CS L CI
Sbjct: 180 GLDQTAIDALPVFL--YGNVTISLEQPFDCAVCLNEFSDTDKLRLLPVCSHAFHLHCIDT 237
Query: 63 FLTEERSQCPHCRASLHMTDL 83
+L S CP CR SL +++
Sbjct: 238 WLLSN-STCPLCRRSLSTSNV 257
>sp|Q5UP58|YR592_MIMIV Putative helicase R592 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_R592 PE=4 SV=1
Length = 841
Score = 35.4 bits (80), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 35 CFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASL 78
CFIC + + + C + CL C+ L S+CP+CR ++
Sbjct: 451 CFICTDPFENPTIMNCCKSIFCLKCLLTTLKTVGSKCPYCRHAI 494
>sp|Q6BLM3|RAD18_DEBHA Postreplication repair E3 ubiquitin-protein ligase RAD18
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=RAD18 PE=3 SV=2
Length = 491
Score = 35.0 bits (79), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 27 RALAEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHMTDLVNC 86
+ L + RC+IC E L+ + C+ C CIR++L S CP C+A ++L
Sbjct: 28 KELDSLQRCYICKEFLK-APVITSCNHTFCSHCIREYLIV-NSHCPLCKAEQFESNLKRV 85
Query: 87 RWMEEV 92
+EE+
Sbjct: 86 ILLEEI 91
>sp|P22682|CBL_MOUSE E3 ubiquitin-protein ligase CBL OS=Mus musculus GN=Cbl PE=1 SV=3
Length = 913
Score = 35.0 bits (79), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 35 CFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHMTDLV 84
C IC E +D + P C L C +C+ + E CP CR + T+ +
Sbjct: 379 CKICAENDKDVKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPI 427
>sp|P22681|CBL_HUMAN E3 ubiquitin-protein ligase CBL OS=Homo sapiens GN=CBL PE=1 SV=2
Length = 906
Score = 35.0 bits (79), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 35 CFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHMTDLV 84
C IC E +D + P C L C +C+ + E CP CR + T+ +
Sbjct: 381 CKICAENDKDVKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPI 429
>sp|Q3TTA7|CBLB_MOUSE E3 ubiquitin-protein ligase CBL-B OS=Mus musculus GN=Cblb PE=1 SV=3
Length = 982
Score = 34.7 bits (78), Expect = 0.85, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 35 CFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHMTD 82
C IC E +D + P C L C +C+ + + CP CR + T+
Sbjct: 373 CKICAENDKDVKIEP-CGHLMCTSCLTAWQESDGQGCPFCRCEIKGTE 419
>sp|P87237|YC0C_SCHPO Uncharacterized RING finger protein C4G3.12c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC4G3.12c PE=4 SV=1
Length = 821
Score = 34.7 bits (78), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 28 ALAEVFRCFICIEKLRDTHLC---PHCSKLCCLACIRQFLTEERSQCPHCRA 76
+L+ C IC+E + +C C ACI Q+LT + CP CRA
Sbjct: 759 SLSSADSCLICLETYTNGDICRKLQACKHFFHQACIDQWLTTGNNSCPLCRA 810
>sp|Q9LS86|DRIPH_ARATH Probable E3 ubiquitin protein ligase DRIPH OS=Arabidopsis
thaliana GN=At3g23060 PE=2 SV=1
Length = 480
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 22 TSHVSRALAEVFRCFICIEKLRDTHLCPHCSKLCCLACIR-QFLTEERSQCPHCRASLHM 80
T +S+ + C IC +D C C +CIR +F+ E + CP C +L +
Sbjct: 3 TKVLSKEVKPCLACPICTNPFKDATTISECLHTFCRSCIRNKFINERVNACPVCNVNLGV 62
Query: 81 TDL----VNCRWME 90
L +C W +
Sbjct: 63 FPLEKLRSDCTWQD 76
>sp|Q6LFN2|ZNRF1_PLAF7 RING finger protein PFF0165c OS=Plasmodium falciparum (isolate 3D7)
GN=PFF0165c PE=2 SV=1
Length = 1103
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 5/67 (7%)
Query: 17 LFISTTSHVSRALAEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRA 76
L I + + R L C +C+E R ++ C + C CI L +CP C+
Sbjct: 1036 LLIEENNELRRRLI----CSVCMENFR-NYIIIKCGHIYCNNCIFNNLKTRNRKCPQCKV 1090
Query: 77 SLHMTDL 83
DL
Sbjct: 1091 PFDKKDL 1097
>sp|Q63HN8|RN213_HUMAN E3 ubiquitin-protein ligase RNF213 OS=Homo sapiens GN=RNF213 PE=1
SV=3
Length = 5207
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 35 CFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASL--HMTDLVNCRWMEEV 92
C IC+ +D +C C + CL C+R + E+ CP+C +L + V+ E +
Sbjct: 3997 CSICLGDAKDP-VCLPCDHVHCLRCLRAWFASEQMICPYCLTALPDEFSPAVSQAHREAI 4055
Query: 93 TQHLDNLQM 101
+H QM
Sbjct: 4056 EKHARFRQM 4064
>sp|Q08562|ULS1_YEAST ATP-dependent helicase ULS1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=ULS1 PE=1 SV=1
Length = 1619
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 9/97 (9%)
Query: 9 TIEVLFLRLFISTTSHVSRALAEV------FRCFICIEKLRDTHLC--PHCSKLCCLACI 60
+ E +LRL+ T A A+V CF C+E+L + C L C CI
Sbjct: 1298 SFEDDWLRLYYKITHMSGEAQAQVITSMNSMTCFWCMEQLEPEAMSVLTGCGHLICDTCI 1357
Query: 61 RQFLTEERSQCPHCRASLHMTDLVNCRWMEEVTQHLD 97
F+ EE S P + + + C+ + +T D
Sbjct: 1358 EPFI-EESSMLPQAKKTKGGAFAIPCKDCQRLTNEKD 1393
>sp|P21093|O1_VACCC Protein O1 OS=Vaccinia virus (strain Copenhagen) GN=O1L PE=3 SV=1
Length = 666
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 64/133 (48%), Gaps = 17/133 (12%)
Query: 3 ELDGLSTIEVLFLRLFISTTSHVSRALAEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQ 62
++D L+ E +F+ + IS R A+ FR +I I++ R + IR+
Sbjct: 280 DVDTLTLDEQIFVEVNISYYDFRYRQFADEFRDYIMIKERRQITMQSGDR-------IRR 332
Query: 63 FLTEERSQCPHCRASLHMTDLVNCRWMEEVTQHLDNLQMNSKSSLQTYQRLFPNSTL--C 120
F + R+++ D +E++ H+DN + NSK S++ +R+ + L C
Sbjct: 333 F-----RRPMSLRSTIIKKD---TDSLEDILAHIDNARKNSKVSIEDVERIISSFRLNPC 384
Query: 121 LNVKNLLSELKLK 133
+ + +LS++ +K
Sbjct: 385 VVRRTMLSDIDIK 397
>sp|Q54NN4|Y8514_DICDI TNF receptor-associated factor family protein DDB_G0285149
OS=Dictyostelium discoideum GN=DDB_G0285149 PE=3 SV=1
Length = 427
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 27 RALAEVFRCFICIEKLRDTH------LCPHCSKLCCLACIRQFLTEERSQCPHCRASLHM 80
+ L+E F C +C + L ++H CPH LC C + + ++ +CP CRA + +
Sbjct: 12 KPLSESFSCIVCTDLLSESHDKIQVNQCPHGHCLCS-DCWTKQIENKKKECPICRAKVKL 70
>sp|Q5A4N5|RAD18_CANAL Postreplication repair E3 ubiquitin-protein ligase RAD18
OS=Candida albicans (strain SC5314 / ATCC MYA-2876)
GN=RAD18 PE=3 SV=1
Length = 378
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 28 ALAEVF---RCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHMTDLV 84
ALAE+ RC+IC + L + + C C CIR+FL + ++CP C+ + + L
Sbjct: 19 ALAELDILKRCYIC-KDLLNAPVRTQCDHTYCSQCIREFLLRD-NRCPLCKTEVFESGLK 76
Query: 85 NCRWMEEV 92
+EE+
Sbjct: 77 RDPLLEEI 84
>sp|E9Q555|RN213_MOUSE E3 ubiquitin-protein ligase RNF213 OS=Mus musculus GN=Rnf213 PE=2
SV=1
Length = 5150
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 35 CFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHMTDL 83
CFIC +D +C C + CL CI+ +L + CP+C +TDL
Sbjct: 3946 CFICHGDAQDP-VCLPCDHVYCLRCIQTWLIPGQMMCPYC-----LTDL 3988
>sp|Q9C7I1|ATL34_ARATH RING-H2 finger protein ATL34 OS=Arabidopsis thaliana GN=ATL34 PE=2
SV=1
Length = 327
Score = 33.1 bits (74), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 35 CFICIEKLRDTH---LCPHCSKLCCLACIRQFLTEERSQCPHCRASL 78
C IC+ + D L P CS +CI +L+ RS CP CRASL
Sbjct: 128 CAICLNEFEDEETLRLMPPCSHAFHASCIDVWLSS-RSTCPVCRASL 173
>sp|Q13191|CBLB_HUMAN E3 ubiquitin-protein ligase CBL-B OS=Homo sapiens GN=CBLB PE=1 SV=2
Length = 982
Score = 33.1 bits (74), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 35 CFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHMTDLV 84
C IC E +D + P C L C +C+ + + CP CR + T+ +
Sbjct: 373 CKICAENDKDVKIEP-CGHLMCTSCLTAWQESDGQGCPFCRCEIKGTEPI 421
>sp|Q9FIY7|SM3L3_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator
of chromatin subfamily A member 3-like 3 OS=Arabidopsis
thaliana GN=At5g43530 PE=3 SV=1
Length = 1277
Score = 33.1 bits (74), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 8/56 (14%)
Query: 35 CFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQ----CPHCRASLHMTDLVNC 86
C IC+E D L P C+ C C+ LT RS CP CR L T+L++C
Sbjct: 1040 CPICLESADDPVLTP-CAHRMCRECL---LTSWRSPSCGLCPICRTILKRTELISC 1091
>sp|Q8K4S7|CBLB_RAT E3 ubiquitin-protein ligase CBL-B OS=Rattus norvegicus GN=Cblb PE=2
SV=1
Length = 938
Score = 33.1 bits (74), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 35 CFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHMTDLV 84
C IC E +D + P C L C +C+ + + CP CR + T+ +
Sbjct: 373 CKICAENDKDVKIEP-CGHLMCTSCLTAWQESDGQGCPFCRCEIKGTEPI 421
>sp|Q5XI59|RNF10_RAT RING finger protein 10 OS=Rattus norvegicus GN=Rnf10 PE=2 SV=1
Length = 802
Score = 33.1 bits (74), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 31 EVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLT-EER--SQCPHCRASLHMTDL 83
EV C IC+ + C + C ACI +L+ ER S+CP C +S+H DL
Sbjct: 221 EVPSCPICLYPPTAAKIT-RCGHIFCWACILHYLSLSERTWSKCPICYSSVHKKDL 275
>sp|D3ZDI6|MYLIP_RAT E3 ubiquitin-protein ligase MYLIP OS=Rattus norvegicus GN=Mylip
PE=2 SV=1
Length = 445
Score = 33.1 bits (74), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 27 RALAEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRA 76
R L E C +C E+ ++ CP +CC +C Q + CP CR+
Sbjct: 379 RKLKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQS-----CPVCRS 423
>sp|Q6BWW6|BRE1_DEBHA E3 ubiquitin-protein ligase BRE1 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=BRE1 PE=3 SV=2
Length = 691
Score = 32.7 bits (73), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 28 ALAEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHMTDLV 84
AL + +C +C + +DT + C + C C ++ L +CP C DL+
Sbjct: 632 ALRSIAKCSVCSKNWKDTAITV-CGHVFCSGCTQERLAARLRRCPTCNKGFSANDLL 687
>sp|Q1MTQ0|BRL1_SCHPO E3 ubiquitin-protein ligase brl1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=brl1 PE=1 SV=1
Length = 692
Score = 32.7 bits (73), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 24/53 (45%)
Query: 32 VFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHMTDLV 84
+ +C +C + L P+C C C+ F + S CP C ++D++
Sbjct: 636 MLKCSVCNFSNWKSKLIPNCGHAFCSNCMEPFYEHKTSTCPQCETPFSVSDIL 688
>sp|Q8WY64|MYLIP_HUMAN E3 ubiquitin-protein ligase MYLIP OS=Homo sapiens GN=MYLIP PE=1
SV=2
Length = 445
Score = 32.7 bits (73), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Query: 27 RALAEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRA 76
R L E C +C E+ ++ CP +CC +C Q CP CR+
Sbjct: 379 RKLKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL-----QSCPVCRS 423
>sp|Q6NRE7|CBLBB_XENLA E3 ubiquitin-protein ligase CBL-B-B OS=Xenopus laevis GN=cblb-b
PE=2 SV=1
Length = 764
Score = 32.7 bits (73), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 35 CFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHMTDLV 84
C IC E +D + P C L C +C+ + + CP CR + T+ +
Sbjct: 386 CKICAENDKDVKIEP-CGHLMCTSCLTSWQESDGQGCPFCRCEIKGTEPI 434
>sp|Q8R0K2|TRI31_MOUSE E3 ubiquitin-protein ligase TRIM31 OS=Mus musculus GN=Trim31 PE=1
SV=1
Length = 507
Score = 32.7 bits (73), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 29 LAEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFL-TEERSQCPHCRASLH 79
L E C IC+E L+D + C CL CI Q T E+ QCP C+ S++
Sbjct: 10 LQEEVTCPICMEILQDP-VTIDCGHNFCLQCISQVGKTSEKIQCPLCKLSVN 60
>sp|Q9UKV5|AMFR_HUMAN E3 ubiquitin-protein ligase AMFR OS=Homo sapiens GN=AMFR PE=1 SV=2
Length = 643
Score = 32.7 bits (73), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 35 CFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHMTDLVNCRWMEE 91
C IC + ++ P C L +C+R +L E+ + CP CR SL++ D N R EE
Sbjct: 341 CAICWDSMQAARKLP-CGHLFHNSCLRSWL-EQDTSCPTCRMSLNIAD--NNRVREE 393
>sp|Q99496|RING2_HUMAN E3 ubiquitin-protein ligase RING2 OS=Homo sapiens GN=RNF2 PE=1
SV=1
Length = 336
Score = 32.7 bits (73), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 23/52 (44%)
Query: 27 RALAEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASL 78
R+L C IC++ L++T C C CI L +CP CR L
Sbjct: 43 RSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKL 94
>sp|O94264|YORF_SCHPO Uncharacterized RING finger protein P8B7.15c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBP8B7.15c PE=4 SV=1
Length = 482
Score = 32.7 bits (73), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 35 CFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHMTDLVNC-----RWM 89
C +C + R+ P C KL C CI+ L + +CP+C + D +N R +
Sbjct: 282 CTLCKKLARNACRTPCCDKLFCEECIQTALLDSDFECPNCHRKDVLLDTLNPDYQKQREI 341
Query: 90 EEVTQHLDNLQMNSKSS 106
E V + + L NSK+S
Sbjct: 342 EAVVKSV--LGSNSKNS 356
>sp|Q5D7I6|TRIM5_ALOSA Tripartite motif-containing protein 5 OS=Alouatta sara GN=TRIM5
PE=3 SV=1
Length = 551
Score = 32.3 bits (72), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 29 LAEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQ-CPHCRASLHMTDLVNCR 87
+ E C IC+E L + L C C ACI E R + CP CR S H +L R
Sbjct: 9 IKEEVTCPICLELLTEP-LSLDCGHSFCQACITANHKESRERSCPLCRVSYHSENLRPNR 67
Query: 88 WMEEVTQHLDNLQMNSKSS 106
+ + + L + ++ +
Sbjct: 68 HLANIAERLREVMLSPEEG 86
>sp|Q5R9J5|RING2_PONAB E3 ubiquitin-protein ligase RING2 OS=Pongo abelii GN=RNF2 PE=2
SV=1
Length = 336
Score = 32.3 bits (72), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 23/52 (44%)
Query: 27 RALAEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASL 78
R+L C IC++ L++T C C CI L +CP CR L
Sbjct: 43 RSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKL 94
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.135 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,071,091
Number of Sequences: 539616
Number of extensions: 3915722
Number of successful extensions: 15301
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 157
Number of HSP's that attempted gapping in prelim test: 15216
Number of HSP's gapped (non-prelim): 220
length of query: 314
length of database: 191,569,459
effective HSP length: 117
effective length of query: 197
effective length of database: 128,434,387
effective search space: 25301574239
effective search space used: 25301574239
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (28.1 bits)