Query psy10334
Match_columns 314
No_of_seqs 341 out of 2295
Neff 8.1
Searched_HMMs 29240
Date Fri Aug 16 15:20:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10334.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10334hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lrq_A E3 ubiquitin-protein li 99.7 6.9E-18 2.4E-22 129.7 3.8 78 24-101 14-91 (100)
2 1jm7_B BARD1, BRCA1-associated 99.7 5.4E-18 1.8E-22 134.0 1.4 101 24-136 14-114 (117)
3 2kr4_A Ubiquitin conjugation f 99.7 1.9E-17 6.5E-22 123.4 3.9 70 26-97 8-77 (85)
4 1t1h_A Gspef-atpub14, armadill 99.7 1.9E-17 6.5E-22 121.2 3.1 69 28-97 4-72 (78)
5 3ztg_A E3 ubiquitin-protein li 99.7 4.2E-17 1.4E-21 123.2 3.9 73 26-98 7-81 (92)
6 2y43_A E3 ubiquitin-protein li 99.6 8.7E-17 3E-21 123.2 4.2 76 24-100 14-89 (99)
7 2kre_A Ubiquitin conjugation f 99.6 1.2E-16 4E-21 122.7 3.6 69 27-97 24-92 (100)
8 1wgm_A Ubiquitin conjugation f 99.6 1.1E-16 3.8E-21 122.3 3.4 70 27-98 17-87 (98)
9 2egp_A Tripartite motif-contai 99.6 3.4E-17 1.2E-21 120.0 0.2 68 25-93 5-78 (79)
10 3fl2_A E3 ubiquitin-protein li 99.6 1.7E-16 5.8E-21 126.6 4.2 73 24-97 44-117 (124)
11 2yu4_A E3 SUMO-protein ligase 99.6 3.5E-16 1.2E-20 118.8 3.8 70 29-98 4-81 (94)
12 2ckl_A Polycomb group ring fin 99.6 5.6E-16 1.9E-20 120.6 4.1 73 24-97 7-83 (108)
13 2djb_A Polycomb group ring fin 99.6 6.9E-16 2.4E-20 111.1 3.0 62 24-86 7-68 (72)
14 2ecw_A Tripartite motif-contai 99.6 4.1E-16 1.4E-20 115.6 1.6 68 25-93 12-84 (85)
15 1z6u_A NP95-like ring finger p 99.6 1.4E-15 4.6E-20 125.4 4.4 73 24-97 70-143 (150)
16 2ecy_A TNF receptor-associated 99.5 1.9E-15 6.6E-20 106.9 3.6 59 24-83 7-65 (66)
17 2ecv_A Tripartite motif-contai 99.5 8.4E-16 2.9E-20 113.8 1.3 68 25-93 12-84 (85)
18 4ayc_A E3 ubiquitin-protein li 99.5 2.4E-15 8.1E-20 122.2 4.0 52 28-81 49-100 (138)
19 3hct_A TNF receptor-associated 99.5 3.4E-15 1.2E-19 118.0 3.5 72 25-97 11-82 (118)
20 2yur_A Retinoblastoma-binding 99.5 3.2E-15 1.1E-19 108.2 2.8 57 24-80 7-64 (74)
21 2f42_A STIP1 homology and U-bo 99.5 6.1E-15 2.1E-19 124.1 4.6 70 27-97 101-170 (179)
22 1jm7_A BRCA1, breast cancer ty 99.5 4.4E-15 1.5E-19 116.0 3.2 72 26-98 15-88 (112)
23 2csy_A Zinc finger protein 183 99.5 5.7E-15 1.9E-19 108.8 3.3 65 27-97 10-74 (81)
24 2ckl_B Ubiquitin ligase protei 99.5 8E-15 2.7E-19 122.6 3.5 71 27-97 49-120 (165)
25 2c2l_A CHIP, carboxy terminus 99.5 9.4E-15 3.2E-19 131.8 4.0 68 29-97 205-272 (281)
26 2ysl_A Tripartite motif-contai 99.5 1E-14 3.5E-19 105.0 2.5 58 25-83 13-72 (73)
27 3htk_C E3 SUMO-protein ligase 99.5 1.7E-14 5.9E-19 127.1 2.9 70 29-98 178-250 (267)
28 1rmd_A RAG1; V(D)J recombinati 99.4 2E-14 6.8E-19 113.1 2.7 59 26-85 17-75 (116)
29 3l11_A E3 ubiquitin-protein li 99.4 8.7E-15 3E-19 115.0 0.4 53 27-80 10-62 (115)
30 1g25_A CDK-activating kinase a 99.4 3.7E-14 1.3E-18 99.8 2.9 55 31-86 2-61 (65)
31 2d8t_A Dactylidin, ring finger 99.4 1.8E-14 6E-19 103.4 1.2 54 28-83 11-64 (71)
32 3knv_A TNF receptor-associated 99.4 4.6E-14 1.6E-18 114.9 3.7 52 27-79 26-77 (141)
33 2ysj_A Tripartite motif-contai 99.4 4.4E-14 1.5E-18 98.8 2.6 49 25-74 13-63 (63)
34 3ng2_A RNF4, snurf, ring finge 99.4 4.5E-14 1.5E-18 101.0 2.5 56 28-85 6-68 (71)
35 2ecj_A Tripartite motif-contai 99.4 6.8E-14 2.3E-18 96.0 3.2 50 24-74 7-58 (58)
36 3hcs_A TNF receptor-associated 99.4 6.5E-14 2.2E-18 117.6 3.4 72 25-97 11-82 (170)
37 2ea6_A Ring finger protein 4; 99.4 4.6E-14 1.6E-18 100.2 1.7 54 25-80 8-68 (69)
38 2ct2_A Tripartite motif protei 99.4 1.1E-13 3.6E-18 103.2 3.1 56 26-82 9-70 (88)
39 1e4u_A Transcriptional repress 99.4 1.6E-13 5.3E-18 100.2 3.3 57 27-83 6-65 (78)
40 2xeu_A Ring finger protein 4; 99.4 1.3E-13 4.4E-18 96.4 1.9 53 31-85 2-61 (64)
41 1iym_A EL5; ring-H2 finger, ub 99.4 2.1E-13 7.1E-18 92.6 2.9 50 29-79 2-54 (55)
42 2ect_A Ring finger protein 126 99.3 1.9E-13 6.4E-18 99.7 1.7 59 26-86 9-70 (78)
43 2ep4_A Ring finger protein 24; 99.3 7.8E-13 2.7E-17 95.4 2.5 54 26-80 9-64 (74)
44 2ecn_A Ring finger protein 141 99.3 3.2E-13 1.1E-17 96.3 0.4 53 27-82 10-62 (70)
45 1chc_A Equine herpes virus-1 r 99.3 1.3E-12 4.5E-17 92.6 2.5 48 30-79 3-51 (68)
46 2ecm_A Ring finger and CHY zin 99.3 1.8E-12 6.2E-17 87.8 2.8 48 30-79 3-54 (55)
47 2l0b_A E3 ubiquitin-protein li 99.3 2.3E-12 8E-17 96.9 3.7 50 29-80 37-89 (91)
48 1x4j_A Ring finger protein 38; 99.3 1.1E-12 3.8E-17 94.9 1.6 50 29-80 20-72 (75)
49 2kiz_A E3 ubiquitin-protein li 99.2 2.4E-12 8.4E-17 91.4 3.3 51 28-80 10-63 (69)
50 1bor_A Transcription factor PM 99.2 8.9E-13 3E-17 90.0 0.7 47 30-81 4-50 (56)
51 2ecl_A Ring-box protein 2; RNF 99.2 3.3E-12 1.1E-16 93.9 2.8 51 31-82 14-78 (81)
52 4ap4_A E3 ubiquitin ligase RNF 99.2 2.5E-12 8.5E-17 102.9 2.2 54 30-85 5-65 (133)
53 4ic3_A E3 ubiquitin-protein li 99.2 3.1E-12 1.1E-16 92.4 1.6 51 24-80 16-67 (74)
54 1v87_A Deltex protein 2; ring- 99.2 1.2E-11 4.2E-16 96.6 4.2 50 31-81 24-95 (114)
55 2bay_A PRE-mRNA splicing facto 99.1 1.3E-11 4.4E-16 85.6 2.0 55 32-87 3-57 (61)
56 2ecg_A Baculoviral IAP repeat- 99.1 2.7E-11 9.4E-16 87.6 2.9 51 24-80 17-68 (75)
57 4ap4_A E3 ubiquitin ligase RNF 99.1 3.2E-11 1.1E-15 96.4 1.8 54 30-85 70-130 (133)
58 2y1n_A E3 ubiquitin-protein li 99.0 6.9E-11 2.4E-15 110.4 3.5 53 30-83 330-382 (389)
59 2vje_A E3 ubiquitin-protein li 99.0 7.4E-11 2.5E-15 82.6 1.9 48 30-79 6-56 (64)
60 1wim_A KIAA0161 protein; ring 99.0 9.3E-11 3.2E-15 88.5 2.0 67 30-97 3-82 (94)
61 3dpl_R Ring-box protein 1; ubi 99.0 1.5E-10 5.2E-15 89.3 3.1 49 31-80 36-101 (106)
62 2yho_A E3 ubiquitin-protein li 99.0 7.6E-11 2.6E-15 86.1 0.9 50 25-80 11-61 (79)
63 2vje_B MDM4 protein; proto-onc 99.0 1.3E-10 4.4E-15 81.1 2.0 47 31-79 6-55 (63)
64 4a0k_B E3 ubiquitin-protein li 98.9 2.7E-10 9.4E-15 89.2 0.2 48 32-80 48-112 (117)
65 3t6p_A Baculoviral IAP repeat- 98.8 9.2E-10 3.1E-14 102.0 0.7 51 24-80 287-338 (345)
66 2ea5_A Cell growth regulator w 98.7 2.2E-09 7.4E-14 76.0 1.7 45 30-80 13-58 (68)
67 2ct0_A Non-SMC element 1 homol 98.6 1.2E-08 4E-13 73.2 3.1 50 30-79 13-63 (74)
68 2d8s_A Cellular modulator of i 98.6 1.4E-08 4.8E-13 74.1 3.1 51 30-81 13-71 (80)
69 2jun_A Midline-1; B-BOX, TRIM, 98.1 3.8E-08 1.3E-12 74.9 -5.0 91 31-153 2-101 (101)
70 3vk6_A E3 ubiquitin-protein li 98.1 9.7E-07 3.3E-11 65.9 2.7 46 34-80 3-49 (101)
71 3k1l_B Fancl; UBC, ring, RWD, 98.0 1E-06 3.5E-11 80.3 1.0 50 30-79 306-372 (381)
72 1vyx_A ORF K3, K3RING; zinc-bi 98.0 4.8E-06 1.6E-10 57.1 4.1 50 30-80 4-59 (60)
73 3h08_A RNH (ribonuclease H); R 97.7 8.4E-06 2.9E-10 66.0 1.8 29 137-165 116-144 (146)
74 1jl1_A Ribonuclease HI; RNAse 97.6 1.5E-05 5.2E-10 65.2 0.9 34 135-168 113-146 (155)
75 2e4l_A Ribonuclease HI, RNAse 97.5 2.5E-05 8.6E-10 64.1 1.5 30 136-165 116-145 (158)
76 2qkb_A Ribonuclease H1, HS-RNA 97.5 3E-05 1E-09 63.3 1.8 32 135-166 121-152 (154)
77 3qio_A GAG-POL polyprotein; RN 97.3 0.00014 4.9E-09 59.1 3.9 32 134-165 116-147 (150)
78 3p1g_A Xenotropic murine leuke 97.2 7.8E-05 2.7E-09 61.7 1.2 34 134-167 120-158 (165)
79 1ril_A Ribonuclease H; hydrola 97.2 6.6E-05 2.3E-09 62.1 0.6 32 136-167 119-150 (166)
80 3nw0_A Non-structural maintena 97.2 0.00023 7.7E-09 62.4 3.9 49 32-80 180-229 (238)
81 2kq2_A Ribonuclease H-related 97.1 0.00011 3.9E-09 59.5 1.0 32 137-168 109-140 (147)
82 3m62_A Ubiquitin conjugation f 96.9 0.00064 2.2E-08 69.9 4.7 68 28-97 887-955 (968)
83 1mu2_A HIV-2 RT; HIV-2 reverse 96.5 0.0015 5E-08 64.2 3.7 60 99-163 494-555 (555)
84 2lsn_A Reverse transcriptase; 96.4 0.0016 5.5E-08 53.7 2.9 29 136-164 128-162 (165)
85 2zd1_A Reverse transcriptase/r 96.1 0.0021 7.1E-08 63.2 2.5 59 99-162 497-557 (557)
86 2cs3_A Protein C14ORF4, MY039 94.1 0.018 6.3E-07 40.8 1.7 43 30-73 13-63 (93)
87 2did_A Tripartite motif protei 92.3 0.00064 2.2E-08 44.9 -8.0 39 118-156 9-52 (53)
88 3u3g_D Ribonuclease H, RNAse H 92.0 0.17 5.7E-06 39.4 4.6 61 99-164 74-136 (140)
89 3hst_B Protein RV2228C/MT2287; 91.8 0.17 5.8E-06 39.6 4.4 61 99-165 71-133 (141)
90 1weo_A Cellulose synthase, cat 91.6 0.2 7E-06 36.2 4.1 48 32-79 16-69 (93)
91 2ehg_A Ribonuclease HI; RNAse 91.3 0.16 5.3E-06 40.4 3.8 25 137-165 110-134 (149)
92 2d8u_A Ubiquitin ligase TRIM63 91.1 0.00062 2.1E-08 46.8 -9.4 43 118-160 9-57 (64)
93 2yrg_A Tripartite motif-contai 90.8 0.00088 3E-08 45.4 -8.6 38 118-155 15-57 (59)
94 2csv_A Tripartite motif protei 90.5 0.0012 4E-08 46.6 -8.6 44 118-161 19-66 (72)
95 3i2d_A E3 SUMO-protein ligase 88.7 0.35 1.2E-05 44.5 4.2 65 31-96 248-316 (371)
96 2ko5_A Ring finger protein Z; 87.6 0.27 9.3E-06 35.9 2.2 47 31-80 27-73 (99)
97 4fo9_A E3 SUMO-protein ligase 86.5 0.58 2E-05 42.9 4.2 64 32-96 215-282 (360)
98 2yvr_A Transcription intermedi 86.0 0.0027 9.3E-08 41.2 -8.5 38 118-155 7-49 (50)
99 2dja_A Midline-2; tripartite m 85.3 0.0024 8.1E-08 46.3 -10.0 44 118-161 19-68 (84)
100 1fre_A Nuclear factor XNF7; zi 84.2 0.008 2.7E-07 37.4 -6.6 25 119-143 5-29 (42)
101 2jmo_A Parkin; IBR, E3 ligase, 81.6 0.18 6.1E-06 36.0 -1.1 33 32-64 25-69 (80)
102 2ct7_A Ring finger protein 31; 81.1 0.15 5.1E-06 36.9 -1.7 30 34-63 27-61 (86)
103 1z60_A TFIIH basal transcripti 81.0 1.1 3.8E-05 29.9 2.7 41 33-74 16-58 (59)
104 3ddt_A E3 ubiquitin-protein li 76.9 0.0084 2.9E-07 38.5 -8.6 35 118-152 7-47 (48)
105 2lri_C Autoimmune regulator; Z 75.4 1.4 4.9E-05 30.0 2.0 48 30-78 10-60 (66)
106 1joc_A EEA1, early endosomal a 70.5 1.9 6.4E-05 33.4 1.9 31 32-62 69-102 (125)
107 2egm_A Tripartite motif-contai 70.0 0.024 8.2E-07 37.8 -8.0 34 117-150 18-56 (57)
108 2zet_C Melanophilin; complex, 69.9 0.46 1.6E-05 38.3 -1.8 67 31-98 67-138 (153)
109 3mjh_B Early endosome antigen 69.0 0.9 3.1E-05 26.8 -0.2 17 31-47 4-20 (34)
110 2yw8_A RUN and FYVE domain-con 67.2 2.3 8E-05 30.1 1.7 32 31-62 18-52 (82)
111 3t7l_A Zinc finger FYVE domain 65.6 2.8 9.6E-05 30.3 1.9 33 31-63 19-54 (90)
112 1z2q_A LM5-1; membrane protein 65.2 2.7 9.3E-05 30.0 1.7 32 31-62 20-54 (84)
113 1zbd_B Rabphilin-3A; G protein 64.8 2 6.8E-05 33.7 1.0 47 30-76 53-106 (134)
114 2gmg_A Hypothetical protein PF 64.7 1.5 5.2E-05 32.8 0.2 33 40-78 62-94 (105)
115 1vfy_A Phosphatidylinositol-3- 63.8 3.5 0.00012 28.5 2.0 29 33-61 12-43 (73)
116 1wd2_A Ariadne-1 protein homol 62.9 0.75 2.6E-05 30.8 -1.6 35 32-66 6-47 (60)
117 1y02_A CARP2, FYVE-ring finger 62.5 3 0.0001 32.0 1.6 45 31-76 18-65 (120)
118 1wfk_A Zinc finger, FYVE domai 62.2 2.8 9.6E-05 30.3 1.3 33 30-62 7-42 (88)
119 2jne_A Hypothetical protein YF 61.3 0.51 1.8E-05 34.7 -2.8 40 33-79 33-72 (101)
120 2o35_A Hypothetical protein DU 60.5 3.1 0.00011 30.6 1.3 13 54-66 42-54 (105)
121 1x4u_A Zinc finger, FYVE domai 60.2 3.2 0.00011 29.6 1.3 31 31-61 13-46 (84)
122 3fyb_A Protein of unknown func 60.0 3.2 0.00011 30.5 1.3 13 54-66 41-53 (104)
123 2l5u_A Chromodomain-helicase-D 55.2 4.9 0.00017 26.7 1.5 46 30-76 9-57 (61)
124 1dvp_A HRS, hepatocyte growth 53.4 4.3 0.00015 34.4 1.2 32 31-62 160-194 (220)
125 1wff_A Riken cDNA 2810002D23 p 51.8 5.8 0.0002 28.4 1.5 28 31-59 24-53 (85)
126 2k16_A Transcription initiatio 50.9 3.9 0.00013 28.3 0.4 50 30-79 16-70 (75)
127 3pwf_A Rubrerythrin; non heme 50.4 6.2 0.00021 32.1 1.7 8 70-77 155-162 (170)
128 2lbm_A Transcriptional regulat 49.9 18 0.0006 28.5 4.1 45 31-76 62-116 (142)
129 3zyq_A Hepatocyte growth facto 49.9 5.7 0.00019 33.9 1.4 32 31-62 163-197 (226)
130 2pk7_A Uncharacterized protein 49.6 4.4 0.00015 27.9 0.5 42 28-87 4-45 (69)
131 1we9_A PHD finger family prote 49.2 2.8 9.5E-05 28.1 -0.6 47 30-76 4-57 (64)
132 1x4v_A Hypothetical protein LO 47.3 11 0.00037 25.4 2.2 28 32-59 12-41 (63)
133 1m3v_A FLIN4, fusion of the LI 46.5 8.4 0.00029 29.1 1.8 51 31-83 31-84 (122)
134 2puy_A PHD finger protein 21A; 42.9 2.4 8.2E-05 28.1 -1.7 45 31-76 4-51 (60)
135 2l43_A N-teminal domain from h 42.6 5.2 0.00018 28.8 -0.0 54 29-82 22-80 (88)
136 1mm2_A MI2-beta; PHD, zinc fin 42.2 4.7 0.00016 26.8 -0.3 47 30-77 7-56 (61)
137 2jny_A Uncharacterized BCR; st 40.5 8.7 0.0003 26.2 0.9 42 27-86 5-46 (67)
138 1wfe_A Riken cDNA 2310008M20 p 40.4 11 0.00037 27.0 1.4 30 30-59 23-54 (86)
139 2xqn_T Testin, TESS; metal-bin 40.3 11 0.00036 28.5 1.5 46 31-80 29-75 (126)
140 2yql_A PHD finger protein 21A; 39.9 2.9 0.0001 27.2 -1.6 46 30-76 7-55 (56)
141 2jr6_A UPF0434 protein NMA0874 39.5 8.4 0.00029 26.3 0.7 41 28-86 4-44 (68)
142 3o36_A Transcription intermedi 38.5 5.8 0.0002 32.5 -0.3 47 31-78 3-52 (184)
143 2yt5_A Metal-response element- 38.5 4.1 0.00014 27.3 -1.0 48 30-77 4-61 (66)
144 2kpi_A Uncharacterized protein 38.4 10 0.00035 24.8 1.0 16 28-43 6-21 (56)
145 2pv0_B DNA (cytosine-5)-methyl 38.3 16 0.00056 33.7 2.6 44 32-76 93-147 (386)
146 2hf1_A Tetraacyldisaccharide-1 38.2 5.7 0.00019 27.2 -0.4 42 28-87 4-45 (68)
147 2d8v_A Zinc finger FYVE domain 38.1 9.6 0.00033 25.8 0.8 33 30-64 6-39 (67)
148 1wil_A KIAA1045 protein; ring 37.6 23 0.00078 25.3 2.7 37 27-63 10-47 (89)
149 3lqh_A Histone-lysine N-methyl 36.7 7.1 0.00024 32.2 -0.1 46 34-79 4-65 (183)
150 3a1b_A DNA (cytosine-5)-methyl 36.2 16 0.00056 29.3 2.0 43 32-75 79-132 (159)
151 3mpx_A FYVE, rhogef and PH dom 36.1 7.6 0.00026 36.1 0.0 34 31-64 374-410 (434)
152 1wg2_A Zinc finger (AN1-like) 35.1 11 0.00039 25.3 0.8 28 31-59 14-42 (64)
153 3vth_A Hydrogenase maturation 34.8 13 0.00045 37.5 1.5 49 30-78 109-193 (761)
154 1xwh_A Autoimmune regulator; P 34.5 5.1 0.00017 27.0 -1.1 46 30-76 6-54 (66)
155 1x4w_A Hypothetical protein FL 34.4 11 0.00039 25.6 0.7 28 31-59 14-45 (67)
156 2cup_A Skeletal muscle LIM-pro 34.2 8.4 0.00029 27.8 -0.0 47 31-80 32-78 (101)
157 1f62_A Transcription factor WS 33.9 17 0.00058 22.8 1.5 43 34-76 2-49 (51)
158 2ysm_A Myeloid/lymphoid or mix 33.6 8.9 0.0003 28.6 0.0 46 30-75 5-55 (111)
159 6rxn_A Rubredoxin; electron tr 32.9 23 0.0008 22.1 1.9 12 32-43 4-15 (46)
160 3v43_A Histone acetyltransfera 32.8 35 0.0012 25.3 3.3 45 31-75 4-62 (112)
161 1wfh_A Zinc finger (AN1-like) 32.7 16 0.00055 24.6 1.2 28 31-59 14-42 (64)
162 4g9i_A Hydrogenase maturation 32.6 18 0.00063 36.6 2.2 48 30-77 104-187 (772)
163 3u5n_A E3 ubiquitin-protein li 31.7 7.2 0.00025 32.6 -0.9 47 31-78 6-55 (207)
164 2js4_A UPF0434 protein BB2007; 31.6 12 0.00043 25.6 0.5 42 28-87 4-45 (70)
165 2rgt_A Fusion of LIM/homeobox 31.2 33 0.0011 27.3 3.1 47 31-81 32-78 (169)
166 3ql9_A Transcriptional regulat 30.9 32 0.0011 26.5 2.8 45 31-76 56-110 (129)
167 1vd4_A Transcription initiatio 30.1 23 0.0008 22.6 1.7 12 69-80 40-51 (62)
168 1lko_A Rubrerythrin all-iron(I 29.2 21 0.00072 29.4 1.6 12 32-43 155-166 (191)
169 3ttc_A HYPF, transcriptional r 28.6 21 0.00073 35.4 1.8 49 30-78 15-99 (657)
170 1wfp_A Zinc finger (AN1-like) 27.7 24 0.00081 24.5 1.4 28 31-59 24-52 (74)
171 1wep_A PHF8; structural genomi 27.7 27 0.00091 24.2 1.7 48 31-79 11-65 (79)
172 1fp0_A KAP-1 corepressor; PHD 27.4 15 0.00052 26.4 0.4 47 30-77 23-72 (88)
173 1a6b_B Momulv, zinc finger pro 27.2 42 0.0014 20.2 2.3 22 246-273 8-29 (40)
174 2ee8_A Protein ODD-skipped-rel 27.1 87 0.003 21.7 4.6 16 30-45 15-30 (106)
175 1rut_X Flinc4, fusion protein 26.6 17 0.00057 29.7 0.5 48 31-80 31-81 (188)
176 1wys_A Riken cDNA 2310008M20 p 25.7 28 0.00095 24.2 1.5 28 31-58 13-42 (75)
177 2akl_A PHNA-like protein PA012 25.6 36 0.0012 26.3 2.1 26 247-274 26-51 (138)
178 1yuz_A Nigerythrin; rubrythrin 25.4 27 0.00093 29.0 1.6 8 70-77 188-195 (202)
179 1wen_A Inhibitor of growth fam 25.2 19 0.00065 24.6 0.5 46 30-78 14-66 (71)
180 2lv9_A Histone-lysine N-methyl 25.1 14 0.00048 27.0 -0.2 46 30-76 26-75 (98)
181 2ri7_A Nucleosome-remodeling f 25.1 18 0.00062 29.0 0.5 46 30-76 6-58 (174)
182 2xjy_A Rhombotin-2; oncoprotei 24.9 29 0.00098 26.2 1.6 48 31-80 28-78 (131)
183 3uk3_C Zinc finger protein 217 24.5 32 0.0011 20.9 1.5 41 32-80 4-44 (57)
184 1weu_A Inhibitor of growth fam 24.4 23 0.0008 25.5 0.9 46 30-78 34-86 (91)
185 1wfl_A Zinc finger protein 216 24.4 28 0.00097 24.1 1.3 26 32-58 25-51 (74)
186 2d8x_A Protein pinch; LIM doma 24.2 29 0.001 22.9 1.4 34 32-65 31-64 (70)
187 2jvx_A NF-kappa-B essential mo 24.1 15 0.00051 20.5 -0.2 14 33-46 4-17 (28)
188 3d00_A Tungsten formylmethanof 24.0 24 0.00082 29.2 1.0 25 31-61 162-186 (191)
189 1x61_A Thyroid receptor intera 23.5 44 0.0015 22.0 2.2 33 32-65 33-66 (72)
190 2kwj_A Zinc finger protein DPF 23.4 18 0.00063 27.0 0.2 42 34-75 3-59 (114)
191 2cur_A Skeletal muscle LIM-pro 23.2 46 0.0016 21.8 2.2 35 31-65 30-64 (69)
192 3o70_A PHD finger protein 13; 23.2 11 0.00039 25.5 -1.0 47 29-76 16-66 (68)
193 1x4l_A Skeletal muscle LIM-pro 22.7 34 0.0011 22.7 1.4 31 32-62 35-65 (72)
194 2jtn_A LIM domain-binding prot 22.7 33 0.0011 27.7 1.6 47 31-81 86-132 (182)
195 2ctu_A Zinc finger protein 483 22.5 33 0.0011 22.0 1.3 35 31-80 17-51 (73)
196 2d9k_A FLN29 gene product; zin 22.1 51 0.0017 22.1 2.3 40 44-83 16-58 (75)
197 2ffw_A Midline-1; B-BOX, ring 21.9 43 0.0015 23.1 1.9 32 31-62 29-62 (78)
198 2fiy_A Protein FDHE homolog; F 21.3 10 0.00035 34.0 -1.9 47 30-77 180-231 (309)
199 2ro1_A Transcription intermedi 21.3 20 0.00068 29.5 0.0 44 33-77 3-49 (189)
200 1twf_L ABC10-alpha, DNA-direct 20.9 44 0.0015 22.8 1.7 11 31-41 27-37 (70)
201 1wem_A Death associated transc 20.9 24 0.00083 24.2 0.4 47 31-78 15-71 (76)
202 2dar_A PDZ and LIM domain prot 20.8 50 0.0017 23.0 2.1 30 33-62 52-81 (90)
203 1nyp_A Pinch protein; LIM doma 20.0 35 0.0012 22.1 1.1 31 32-63 31-62 (66)
No 1
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.69 E-value=6.9e-18 Score=129.70 Aligned_cols=78 Identities=69% Similarity=1.431 Sum_probs=67.8
Q ss_pred hHHHhccccceeccccccccCccccCCCCCcchHHHHHHHHhccCCcccccccccccchhhhhhhhHhhhhhhccccc
Q psy10334 24 HVSRALAEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHMTDLVNCRWMEEVTQHLDNLQM 101 (314)
Q Consensus 24 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~~~~l~~ 101 (314)
.....+++++.|+||+++|.+|+++..|||.||+.||.+|+......||.||.++...++.+++.+.++++.++.+..
T Consensus 14 ~~~~~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l~~ 91 (100)
T 3lrq_A 14 QSVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTLQL 91 (100)
T ss_dssp HHHHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHHHCC
T ss_pred cccccCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHHHHH
Confidence 445667889999999999999998336999999999999999743689999999999999999999999998876643
No 2
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.68 E-value=5.4e-18 Score=134.03 Aligned_cols=101 Identities=19% Similarity=0.295 Sum_probs=67.5
Q ss_pred hHHHhccccceeccccccccCccccCCCCCcchHHHHHHHHhccCCcccccccccccchhhhhhhhHhhhhhhccccccc
Q psy10334 24 HVSRALAEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHMTDLVNCRWMEEVTQHLDNLQMNS 103 (314)
Q Consensus 24 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~~~~l~~ds 103 (314)
..++.+.+++.|+||+++|.+|++++.|||+||+.||..|+. ..||+||.++....+.+|..+.++++.++.+....
T Consensus 14 ~~~~~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~~~~~ 90 (117)
T 1jm7_B 14 AALDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKINRQLDSMIQLCSKLRNLL 90 (117)
T ss_dssp HHHHHHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCccccccccHHHHHHHHHHHHHHHHH
Confidence 445667889999999999999998735999999999999987 57999999998888999999999999887543221
Q ss_pred cccccccccCCCChhhhHHHHHHHHHHHhhcCC
Q psy10334 104 KSSLQTYQRLFPNSTLCLNVKNLLSELKLKYGL 136 (314)
Q Consensus 104 ~sal~~l~~~~~~~~~c~~~~~~l~~~~~~d~~ 136 (314)
.. .....|..|.+.+.+||++|++
T Consensus 91 ~~---------~~~~~c~~h~~~~~lfc~~~~k 114 (117)
T 1jm7_B 91 HD---------NELSDLKEDKPRKSLFNDAGNK 114 (117)
T ss_dssp HC---------CCCCC-----------------
T ss_pred hh---------ccccccccccccCccceecccc
Confidence 11 1235677888889999987654
No 3
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.67 E-value=1.9e-17 Score=123.38 Aligned_cols=70 Identities=17% Similarity=0.078 Sum_probs=63.2
Q ss_pred HHhccccceeccccccccCccccCCCCCcchHHHHHHHHhccCCcccccccccccchhhhhhhhHhhhhhhc
Q psy10334 26 SRALAEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHMTDLVNCRWMEEVTQHLD 97 (314)
Q Consensus 26 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~~~ 97 (314)
...+.+++.||||+++|+|||+++ |||+||+.||.+||.. ...||+|+.++....+.+|..+.++++.+.
T Consensus 8 ~~~~p~~~~CpI~~~~m~dPV~~~-cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~ 77 (85)
T 2kr4_A 8 YSDAPDEFRDPLMDTLMTDPVRLP-SGTVMDRSIILRHLLN-SPTDPFNRQMLTESMLEPVPELKEQIQAWM 77 (85)
T ss_dssp CTTCCTTTBCTTTCSBCSSEEECT-TSCEEEHHHHHHHHHH-CSBCTTTCCBCCGGGCEECHHHHHHHHHHH
T ss_pred hhcCchheECcccCchhcCCeECC-CCCEECHHHHHHHHhc-CCCCCCCcCCCChHhcchHHHHHHHHHHHH
Confidence 345678999999999999999985 9999999999999986 578999999999999999999998888775
No 4
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.66 E-value=1.9e-17 Score=121.20 Aligned_cols=69 Identities=19% Similarity=0.360 Sum_probs=61.5
Q ss_pred hccccceeccccccccCccccCCCCCcchHHHHHHHHhccCCcccccccccccchhhhhhhhHhhhhhhc
Q psy10334 28 ALAEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHMTDLVNCRWMEEVTQHLD 97 (314)
Q Consensus 28 ~~~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~~~ 97 (314)
.+.+++.|+||+++|.||+++ .|||.||+.||.+|+..+...||+||.++....+.+|..+.++++.+.
T Consensus 4 ~~~~~~~C~IC~~~~~~Pv~~-~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~ 72 (78)
T 1t1h_A 4 EFPEYFRCPISLELMKDPVIV-STGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWC 72 (78)
T ss_dssp CCSSSSSCTTTSCCCSSEEEE-TTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHH
T ss_pred CCcccCCCCCccccccCCEEc-CCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHH
Confidence 457789999999999999998 599999999999999864568999999999888999999888887775
No 5
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.65 E-value=4.2e-17 Score=123.21 Aligned_cols=73 Identities=23% Similarity=0.621 Sum_probs=62.5
Q ss_pred HHhccccceeccccccccCccccCCCCCcchHHHHHHHHhcc-CCccccccccc-ccchhhhhhhhHhhhhhhcc
Q psy10334 26 SRALAEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEE-RSQCPHCRASL-HMTDLVNCRWMEEVTQHLDN 98 (314)
Q Consensus 26 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~-~~~CP~Cr~~~-~~~~~~~~~~~~~~~~~~~~ 98 (314)
.+.+.+++.|+||+++|.+|++++.|||+||+.||..||... ...||.||.++ ....+.+|..+.++++.++.
T Consensus 7 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~ 81 (92)
T 3ztg_A 7 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKN 81 (92)
T ss_dssp CCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHH
T ss_pred cccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHH
Confidence 345678899999999999999984499999999999999753 35899999997 56778899999999888864
No 6
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.64 E-value=8.7e-17 Score=123.19 Aligned_cols=76 Identities=33% Similarity=0.724 Sum_probs=66.5
Q ss_pred hHHHhccccceeccccccccCccccCCCCCcchHHHHHHHHhccCCcccccccccccchhhhhhhhHhhhhhhcccc
Q psy10334 24 HVSRALAEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHMTDLVNCRWMEEVTQHLDNLQ 100 (314)
Q Consensus 24 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~~~~l~ 100 (314)
...+.+++.+.|+||++.|.+|++++.|||.||..||.+|+.. ...||.||.++....+.+|..+.++++.++...
T Consensus 14 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~ 89 (99)
T 2y43_A 14 AVMKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTEPDLKNNRILDELVKSLNFAR 89 (99)
T ss_dssp GGGHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHH
T ss_pred hHHHhCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCChhhCCcCHHHHHHHHHHHHHH
Confidence 3455677889999999999999987569999999999999986 478999999999888999999999999887543
No 7
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.62 E-value=1.2e-16 Score=122.68 Aligned_cols=69 Identities=17% Similarity=0.107 Sum_probs=62.6
Q ss_pred HhccccceeccccccccCccccCCCCCcchHHHHHHHHhccCCcccccccccccchhhhhhhhHhhhhhhc
Q psy10334 27 RALAEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHMTDLVNCRWMEEVTQHLD 97 (314)
Q Consensus 27 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~~~ 97 (314)
..+.+++.||||+++|+|||+++ |||+||+.||.+||.. ...||+|+.++....+.+|..+.++++.+.
T Consensus 24 ~~~p~~~~CpI~~~~m~dPV~~~-cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~ 92 (100)
T 2kre_A 24 SDAPDEFRDPLMDTLMTDPVRLP-SGTIMDRSIILRHLLN-SPTDPFNRQTLTESMLEPVPELKEQIQAWM 92 (100)
T ss_dssp SSCSTTTBCTTTCSBCSSEEEET-TTEEEEHHHHHHHTTS-CSBCSSSCCBCCTTSSEECHHHHHHHHHHH
T ss_pred ccCcHhhCCcCccCcccCCeECC-CCCEEchHHHHHHHHc-CCCCCCCCCCCChhhceECHHHHHHHHHHH
Confidence 45678899999999999999985 9999999999999986 578999999999999999999999888775
No 8
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.62 E-value=1.1e-16 Score=122.32 Aligned_cols=70 Identities=17% Similarity=0.077 Sum_probs=63.0
Q ss_pred HhccccceeccccccccCccccCCCC-CcchHHHHHHHHhccCCcccccccccccchhhhhhhhHhhhhhhcc
Q psy10334 27 RALAEVFRCFICIEKLRDTHLCPHCS-KLCCLACIRQFLTEERSQCPHCRASLHMTDLVNCRWMEEVTQHLDN 98 (314)
Q Consensus 27 ~~~~~~~~C~IC~~~~~~p~~~~~Cg-H~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~~~~ 98 (314)
..+.+++.||||+++|+|||++ .|| |+||+.||.+||.. ...||+||.++....+.+|..|.++++.+..
T Consensus 17 ~~~p~~~~CpI~~~~m~dPV~~-~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~ 87 (98)
T 1wgm_A 17 ADACDEFLDPIMSTLMCDPVVL-PSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNTELKEKIQRWLA 87 (98)
T ss_dssp CSCCTTTBCTTTCSBCSSEEEC-TTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEECHHHHHHHHHHHH
T ss_pred hcCcHhcCCcCccccccCCeEC-CCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhhceEcHHHHHHHHHHHH
Confidence 3467889999999999999998 599 99999999999987 5789999999999999999999999888853
No 9
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.62 E-value=3.4e-17 Score=120.00 Aligned_cols=68 Identities=28% Similarity=0.531 Sum_probs=58.1
Q ss_pred HHHhccccceeccccccccCccccCCCCCcchHHHHHHHHhcc------CCcccccccccccchhhhhhhhHhhh
Q psy10334 25 VSRALAEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEE------RSQCPHCRASLHMTDLVNCRWMEEVT 93 (314)
Q Consensus 25 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~------~~~CP~Cr~~~~~~~~~~~~~~~~~~ 93 (314)
..+.+++++.|+||++.|.+|+++ .|||.||..||.+|+... ...||.||.++...++.+|..+.+++
T Consensus 5 ~~~~~~~~~~C~IC~~~~~~p~~l-~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~lv 78 (79)
T 2egp_A 5 SSGNVQEEVTCPICLELLTEPLSL-DCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLANIV 78 (79)
T ss_dssp SSCCCCCCCEETTTTEECSSCCCC-SSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCCCC
T ss_pred hHhhcccCCCCcCCCcccCCeeEC-CCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHHhh
Confidence 445678899999999999999998 599999999999999862 35799999999988888887766554
No 10
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.62 E-value=1.7e-16 Score=126.63 Aligned_cols=73 Identities=21% Similarity=0.401 Sum_probs=62.7
Q ss_pred hHHHhccccceeccccccccCccccCCCCCcchHHHHHHHHhccCCccccccccccc-chhhhhhhhHhhhhhhc
Q psy10334 24 HVSRALAEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHM-TDLVNCRWMEEVTQHLD 97 (314)
Q Consensus 24 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~-~~~~~~~~~~~~~~~~~ 97 (314)
.....+++++.|+||++.|.+|+++ .|||+||..||..|+......||.||.++.. ..+.+|..+.++++.+-
T Consensus 44 ~~~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~ 117 (124)
T 3fl2_A 44 LFLSKVEETFQCICCQELVFRPITT-VCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLF 117 (124)
T ss_dssp HHHHHHHHHTBCTTTSSBCSSEEEC-TTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHS
T ss_pred HHHHhCccCCCCCcCChHHcCcEEe-eCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHc
Confidence 4456677889999999999999998 5999999999999998644589999999987 67888988888887663
No 11
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=3.5e-16 Score=118.77 Aligned_cols=70 Identities=16% Similarity=0.366 Sum_probs=61.3
Q ss_pred ccccceeccccccccCccccCCCCCcchHHHHHHHHhcc-----CCcccc--cccc-cccchhhhhhhhHhhhhhhcc
Q psy10334 29 LAEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEE-----RSQCPH--CRAS-LHMTDLVNCRWMEEVTQHLDN 98 (314)
Q Consensus 29 ~~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~-----~~~CP~--Cr~~-~~~~~~~~~~~~~~~~~~~~~ 98 (314)
..+++.||||+++|+|||+++.|||+||+.||.+||... ...||+ |+.. +...++.+|..|.++++.++.
T Consensus 4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~ 81 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNK 81 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHT
T ss_pred CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHH
Confidence 467899999999999999975599999999999999863 247999 9887 888999999999999888863
No 12
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.58 E-value=5.6e-16 Score=120.57 Aligned_cols=73 Identities=21% Similarity=0.461 Sum_probs=61.4
Q ss_pred hHHHhccccceeccccccccCccccCCCCCcchHHHHHHHHhccCCcccccccccccc----hhhhhhhhHhhhhhhc
Q psy10334 24 HVSRALAEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHMT----DLVNCRWMEEVTQHLD 97 (314)
Q Consensus 24 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~----~~~~~~~~~~~~~~~~ 97 (314)
...+.+.+++.|+||++.|.+|+++..|||.||..||..|+.. ...||.||.++... .+..|..+.++++.+.
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~ 83 (108)
T 2ckl_A 7 IKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLV 83 (108)
T ss_dssp EEHHHHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHS
T ss_pred cchhccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh-CCcCcCCCccccccCcccccCcCHHHHHHHHHHh
Confidence 3456678899999999999999987469999999999999987 47899999998765 6677888888777664
No 13
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=6.9e-16 Score=111.14 Aligned_cols=62 Identities=24% Similarity=0.490 Sum_probs=52.7
Q ss_pred hHHHhccccceeccccccccCccccCCCCCcchHHHHHHHHhccCCcccccccccccchhhhh
Q psy10334 24 HVSRALAEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHMTDLVNC 86 (314)
Q Consensus 24 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 86 (314)
...+.+++++.|+||++.+.+|++++.|||.||+.||.+|+.. ...||+||.++...++..+
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 7 GNLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQPLSG 68 (72)
T ss_dssp CCCCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSCSCCC
T ss_pred hhHhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCccccccc
Confidence 3445677889999999999999987569999999999999987 5789999999987766544
No 14
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.57 E-value=4.1e-16 Score=115.55 Aligned_cols=68 Identities=25% Similarity=0.557 Sum_probs=57.5
Q ss_pred HHHhccccceeccccccccCccccCCCCCcchHHHHHHHHhcc-----CCcccccccccccchhhhhhhhHhhh
Q psy10334 25 VSRALAEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEE-----RSQCPHCRASLHMTDLVNCRWMEEVT 93 (314)
Q Consensus 25 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~-----~~~CP~Cr~~~~~~~~~~~~~~~~~~ 93 (314)
..+.+.+.+.|+||++.+.+|+++ .|||.||..||..|+... ...||.||.++....+.+|..+.+++
T Consensus 12 ~~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~v 84 (85)
T 2ecw_A 12 VLEMIKEEVTCPICLELLKEPVSA-DCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANIV 84 (85)
T ss_dssp CCCCCCTTTSCTTTCSCCSSCEEC-TTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSSC
T ss_pred HHHhCccCCCCcCCChhhCcceeC-CCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHhh
Confidence 345577889999999999999987 599999999999999872 35799999999888888887666554
No 15
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.56 E-value=1.4e-15 Score=125.36 Aligned_cols=73 Identities=18% Similarity=0.437 Sum_probs=63.0
Q ss_pred hHHHhccccceeccccccccCccccCCCCCcchHHHHHHHHhccCCcccccccccccc-hhhhhhhhHhhhhhhc
Q psy10334 24 HVSRALAEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHMT-DLVNCRWMEEVTQHLD 97 (314)
Q Consensus 24 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~-~~~~~~~~~~~~~~~~ 97 (314)
.....+.+.+.|+||++.|.+|+++ .|||.||+.||.+|+......||+||.++... .+.+|..+.++++.+.
T Consensus 70 ~~~~~l~~~~~C~IC~~~~~~pv~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~ 143 (150)
T 1z6u_A 70 NFLKKLEQSFMCVCCQELVYQPVTT-ECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFF 143 (150)
T ss_dssp GHHHHHHHHTBCTTTSSBCSSEEEC-TTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHS
T ss_pred hHHHhCccCCEeecCChhhcCCEEc-CCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHh
Confidence 3455667889999999999999997 59999999999999987445899999999877 7888999888888774
No 16
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1.9e-15 Score=106.85 Aligned_cols=59 Identities=17% Similarity=0.526 Sum_probs=49.6
Q ss_pred hHHHhccccceeccccccccCccccCCCCCcchHHHHHHHHhccCCcccccccccccchh
Q psy10334 24 HVSRALAEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHMTDL 83 (314)
Q Consensus 24 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 83 (314)
...+.+.+.+.|+||++.+.+|+.+ .|||.||+.||.+|+......||+||.++...++
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 7 GFVKTVEDKYKCEKCHLVLCSPKQT-ECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CSCCSCCCCEECTTTCCEESSCCCC-SSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred hhhhcCCcCCCCCCCChHhcCeeEC-CCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 3345567889999999999999997 6999999999999996435689999998876543
No 17
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=8.4e-16 Score=113.84 Aligned_cols=68 Identities=25% Similarity=0.526 Sum_probs=57.5
Q ss_pred HHHhccccceeccccccccCccccCCCCCcchHHHHHHHHhcc-----CCcccccccccccchhhhhhhhHhhh
Q psy10334 25 VSRALAEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEE-----RSQCPHCRASLHMTDLVNCRWMEEVT 93 (314)
Q Consensus 25 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~-----~~~CP~Cr~~~~~~~~~~~~~~~~~~ 93 (314)
..+.+.+.+.|+||++.+.+|+.+ .|||.||..||..|+... ...||.||..+...++.+|..+.+++
T Consensus 12 ~~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~v 84 (85)
T 2ecv_A 12 ILVNVKEEVTCPICLELLTQPLSL-DCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVANIV 84 (85)
T ss_dssp CCCCCCCCCCCTTTCSCCSSCBCC-SSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCCCC
T ss_pred HHHHccCCCCCCCCCcccCCceeC-CCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHHhh
Confidence 345677889999999999999998 599999999999999861 35799999999988888887766554
No 18
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.54 E-value=2.4e-15 Score=122.21 Aligned_cols=52 Identities=25% Similarity=0.727 Sum_probs=45.9
Q ss_pred hccccceeccccccccCccccCCCCCcchHHHHHHHHhccCCcccccccccccc
Q psy10334 28 ALAEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHMT 81 (314)
Q Consensus 28 ~~~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 81 (314)
.+++++.|+||++.|.+|+++ .|||.||..||..|+.. ...||.||.++...
T Consensus 49 ~~~~~~~C~iC~~~~~~~~~~-~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 49 VLENELQCIICSEYFIEAVTL-NCAHSFCSYCINEWMKR-KIECPICRKDIKSK 100 (138)
T ss_dssp HHHHHSBCTTTCSBCSSEEEE-TTSCEEEHHHHHHHTTT-CSBCTTTCCBCCCE
T ss_pred hccccCCCcccCcccCCceEC-CCCCCccHHHHHHHHHc-CCcCCCCCCcCCCC
Confidence 456778999999999999998 59999999999999987 57899999998643
No 19
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.52 E-value=3.4e-15 Score=118.02 Aligned_cols=72 Identities=22% Similarity=0.429 Sum_probs=60.9
Q ss_pred HHHhccccceeccccccccCccccCCCCCcchHHHHHHHHhccCCcccccccccccchhhhhhhhHhhhhhhc
Q psy10334 25 VSRALAEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHMTDLVNCRWMEEVTQHLD 97 (314)
Q Consensus 25 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~~~ 97 (314)
....+++++.|+||++.+.+|+++ .|||.||+.||.+|+......||.||.++....+.++..+.+.+..+.
T Consensus 11 ~~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l~ 82 (118)
T 3hct_A 11 FDPPLESKYECPICLMALREAVQT-PCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLM 82 (118)
T ss_dssp BSSCCCGGGBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSE
T ss_pred hccCCCCCCCCCcCChhhcCeEEC-CcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccce
Confidence 345678889999999999999998 599999999999999874458999999999888888877776666554
No 20
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.52 E-value=3.2e-15 Score=108.21 Aligned_cols=57 Identities=26% Similarity=0.630 Sum_probs=47.7
Q ss_pred hHHHhccccceeccccccccCccccCCCCCcchHHHHHHHHhcc-CCccccccccccc
Q psy10334 24 HVSRALAEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEE-RSQCPHCRASLHM 80 (314)
Q Consensus 24 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~-~~~CP~Cr~~~~~ 80 (314)
...+.+.+++.|+||++.|.+|++++.|||.||+.||.+|+... ...||+||.++..
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 7 GEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp SCCCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred cccccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 33456778899999999999999984499999999999999863 2579999997543
No 21
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.51 E-value=6.1e-15 Score=124.11 Aligned_cols=70 Identities=19% Similarity=0.161 Sum_probs=62.1
Q ss_pred HhccccceeccccccccCccccCCCCCcchHHHHHHHHhccCCcccccccccccchhhhhhhhHhhhhhhc
Q psy10334 27 RALAEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHMTDLVNCRWMEEVTQHLD 97 (314)
Q Consensus 27 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~~~ 97 (314)
..+.+.+.||||+++|+|||++ .|||+||+.||..||......||+|+.++...++.+|..|.++++.+.
T Consensus 101 ~~ip~~f~CPI~~elm~DPV~~-~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~ 170 (179)
T 2f42_A 101 REIPDYLCGKISFELMREPCIT-PSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFI 170 (179)
T ss_dssp CCCCGGGBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHH
T ss_pred cCCcHhhcccCccccCCCCeEC-CCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHH
Confidence 3457889999999999999998 599999999999999863346999999999999999999999888775
No 22
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.51 E-value=4.4e-15 Score=115.97 Aligned_cols=72 Identities=22% Similarity=0.618 Sum_probs=60.3
Q ss_pred HHhccccceeccccccccCccccCCCCCcchHHHHHHHHhcc--CCcccccccccccchhhhhhhhHhhhhhhcc
Q psy10334 26 SRALAEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEE--RSQCPHCRASLHMTDLVNCRWMEEVTQHLDN 98 (314)
Q Consensus 26 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~--~~~CP~Cr~~~~~~~~~~~~~~~~~~~~~~~ 98 (314)
.+.+.+.+.|+||++.+.+|+++ .|||.||..||.+|+... ...||.||.++....+..|..+.++++.+..
T Consensus 15 ~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~~ 88 (112)
T 1jm7_A 15 INAMQKILECPICLELIKEPVST-KCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLK 88 (112)
T ss_dssp HHHHHHHTSCSSSCCCCSSCCBC-TTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHH
T ss_pred HHhccCCCCCcccChhhcCeEEC-CCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHHH
Confidence 44567789999999999999997 599999999999999863 2479999999998888888777777766653
No 23
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=5.7e-15 Score=108.76 Aligned_cols=65 Identities=20% Similarity=0.514 Sum_probs=52.0
Q ss_pred HhccccceeccccccccCccccCCCCCcchHHHHHHHHhccCCcccccccccccchhhhhhhhHhhhhhhc
Q psy10334 27 RALAEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHMTDLVNCRWMEEVTQHLD 97 (314)
Q Consensus 27 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~~~ 97 (314)
+..++.+.|+||++.+.+|+++ .|||.||..||.+|+.. ...||+||.++. ..+.+|. ++++.++
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~-~~~~~~~---~l~~~~~ 74 (81)
T 2csy_A 10 EEEEIPFRCFICRQAFQNPVVT-KCRHYFCESCALEHFRA-TPRCYICDQPTG-GIFNPAK---ELMAKLQ 74 (81)
T ss_dssp SCCCCCSBCSSSCSBCCSEEEC-TTSCEEEHHHHHHHHHH-CSBCSSSCCBCC-SCCEECH---HHHHHHS
T ss_pred ccCCCCCCCcCCCchhcCeeEc-cCCCHhHHHHHHHHHHC-CCcCCCcCcccc-ccCCcHH---HHHHHHH
Confidence 3456779999999999999987 59999999999999986 578999999986 4555553 3444444
No 24
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.49 E-value=8e-15 Score=122.63 Aligned_cols=71 Identities=25% Similarity=0.524 Sum_probs=59.8
Q ss_pred HhccccceeccccccccCccccCCCCCcchHHHHHHHHhccCCcccccccccc-cchhhhhhhhHhhhhhhc
Q psy10334 27 RALAEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASLH-MTDLVNCRWMEEVTQHLD 97 (314)
Q Consensus 27 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~-~~~~~~~~~~~~~~~~~~ 97 (314)
+.+.+.+.|+||++.|.+|+.+..|||.||..||.+|+......||.||.++. ...+.+|..+.++++.+.
T Consensus 49 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~ 120 (165)
T 2ckl_B 49 RSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIY 120 (165)
T ss_dssp -CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC
T ss_pred hhCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHH
Confidence 44567889999999999999874699999999999999864568999999984 466888888888887775
No 25
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.49 E-value=9.4e-15 Score=131.76 Aligned_cols=68 Identities=19% Similarity=0.192 Sum_probs=60.5
Q ss_pred ccccceeccccccccCccccCCCCCcchHHHHHHHHhccCCcccccccccccchhhhhhhhHhhhhhhc
Q psy10334 29 LAEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHMTDLVNCRWMEEVTQHLD 97 (314)
Q Consensus 29 ~~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~~~ 97 (314)
..+.+.||||+++|+|||+++ |||+||+.||.+||......||+||.++...++.+|..+.++++.+.
T Consensus 205 ~~~~~~c~i~~~~~~dPv~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~ 272 (281)
T 2c2l_A 205 IPDYLCGKISFELMREPCITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFI 272 (281)
T ss_dssp CCSTTBCTTTCSBCSSEEECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHH
T ss_pred CCcccCCcCcCCHhcCCeECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHH
Confidence 346799999999999999985 99999999999999874445999999999999999999999888775
No 26
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=1e-14 Score=105.03 Aligned_cols=58 Identities=28% Similarity=0.587 Sum_probs=48.9
Q ss_pred HHHhccccceeccccccccCccccCCCCCcchHHHHHHHHhc--cCCcccccccccccchh
Q psy10334 25 VSRALAEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTE--ERSQCPHCRASLHMTDL 83 (314)
Q Consensus 25 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~--~~~~CP~Cr~~~~~~~~ 83 (314)
..+.+++.+.|+||++.+.+|+.+ .|||.||..||.+|+.. ....||.||.++...++
T Consensus 13 ~~~~~~~~~~C~IC~~~~~~~~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 13 FVNKLQEEVICPICLDILQKPVTI-DCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCCCCCBCTTTCSBCSSEEEC-TTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred HHHhCccCCEeccCCcccCCeEEc-CCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 345567889999999999999998 69999999999999973 24579999998876554
No 27
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.45 E-value=1.7e-14 Score=127.13 Aligned_cols=70 Identities=19% Similarity=0.298 Sum_probs=61.8
Q ss_pred ccccceeccccccccCccccCCCCCcchHHHHHHHHhcc-CCcccc--cccccccchhhhhhhhHhhhhhhcc
Q psy10334 29 LAEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEE-RSQCPH--CRASLHMTDLVNCRWMEEVTQHLDN 98 (314)
Q Consensus 29 ~~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~-~~~CP~--Cr~~~~~~~~~~~~~~~~~~~~~~~ 98 (314)
...++.||||+++|+|||+...|||+||+.||.+||... ...||+ |+..+...++++|..|.++++..+.
T Consensus 178 ~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~ 250 (267)
T 3htk_C 178 GKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKM 250 (267)
T ss_dssp SBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHH
T ss_pred CceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHH
Confidence 456799999999999999854799999999999999863 357999 9999999999999999999988864
No 28
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.45 E-value=2e-14 Score=113.14 Aligned_cols=59 Identities=32% Similarity=0.576 Sum_probs=50.7
Q ss_pred HHhccccceeccccccccCccccCCCCCcchHHHHHHHHhccCCcccccccccccchhhh
Q psy10334 26 SRALAEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHMTDLVN 85 (314)
Q Consensus 26 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~ 85 (314)
.+.+.+++.|+||++.+.+|+++ .|||.||..||.+|+......||.||.++...++..
T Consensus 17 ~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~ 75 (116)
T 1rmd_A 17 PAHFVKSISCQICEHILADPVET-SCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLES 75 (116)
T ss_dssp CHHHHHHTBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBC
T ss_pred HHhccCCCCCCCCCcHhcCcEEc-CCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccc
Confidence 34566789999999999999997 699999999999999874468999999998777653
No 29
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.44 E-value=8.7e-15 Score=115.03 Aligned_cols=53 Identities=23% Similarity=0.523 Sum_probs=46.3
Q ss_pred HhccccceeccccccccCccccCCCCCcchHHHHHHHHhccCCccccccccccc
Q psy10334 27 RALAEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHM 80 (314)
Q Consensus 27 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 80 (314)
..+.+++.|+||++.|.+|+++ .|||.||..||.+|+......||.||.++..
T Consensus 10 ~~~~~~~~C~iC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 10 IPSLSECQCGICMEILVEPVTL-PCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp CCCHHHHBCTTTCSBCSSCEEC-TTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred cCCCCCCCCccCCcccCceeEc-CCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 3456789999999999999998 5999999999999997645689999998864
No 30
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.43 E-value=3.7e-14 Score=99.84 Aligned_cols=55 Identities=20% Similarity=0.536 Sum_probs=46.6
Q ss_pred ccceeccccc-cccCcc----ccCCCCCcchHHHHHHHHhccCCcccccccccccchhhhh
Q psy10334 31 EVFRCFICIE-KLRDTH----LCPHCSKLCCLACIRQFLTEERSQCPHCRASLHMTDLVNC 86 (314)
Q Consensus 31 ~~~~C~IC~~-~~~~p~----~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 86 (314)
+++.|+||++ ++.+|+ ++ .|||.||..||.+|+......||.||.++...++.++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 61 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVN-VCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQ 61 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEEC-TTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEE
T ss_pred CCCcCCcCCCCccCCCccCeecC-CCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceee
Confidence 4688999999 999995 44 6999999999999987645679999999987777554
No 31
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=1.8e-14 Score=103.40 Aligned_cols=54 Identities=20% Similarity=0.442 Sum_probs=46.7
Q ss_pred hccccceeccccccccCccccCCCCCcchHHHHHHHHhccCCcccccccccccchh
Q psy10334 28 ALAEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHMTDL 83 (314)
Q Consensus 28 ~~~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 83 (314)
...+.+.|+||++.+.+|+.+ .|||.||+.||.+|+.. ...||+||.++....+
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~-~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~ 64 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVHPVSL-PCKHVFCYLCVKGASWL-GKRCALCRQEIPEDFL 64 (71)
T ss_dssp SSSSCCBCSSSSSBCSSEEEE-TTTEEEEHHHHHHCTTC-SSBCSSSCCBCCHHHH
T ss_pred cCCCCCCCccCCcccCCCEEc-cCCCHHHHHHHHHHHHC-CCcCcCcCchhCHhhc
Confidence 345678999999999999998 59999999999999987 4789999998876554
No 32
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.43 E-value=4.6e-14 Score=114.94 Aligned_cols=52 Identities=21% Similarity=0.509 Sum_probs=46.3
Q ss_pred HhccccceeccccccccCccccCCCCCcchHHHHHHHHhccCCcccccccccc
Q psy10334 27 RALAEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASLH 79 (314)
Q Consensus 27 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 79 (314)
+.+++++.|+||+++|.+|+++ .|||.||+.||.+|+......||+||.++.
T Consensus 26 ~~l~~~~~C~IC~~~~~~pv~~-~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 26 TKLEAKYLCSACRNVLRRPFQA-QCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp GGCCGGGBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred ccCCcCcCCCCCChhhcCcEEC-CCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 6788999999999999999997 699999999999999864458999998753
No 33
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=4.4e-14 Score=98.79 Aligned_cols=49 Identities=31% Similarity=0.630 Sum_probs=42.4
Q ss_pred HHHhccccceeccccccccCccccCCCCCcchHHHHHHHHhc--cCCccccc
Q psy10334 25 VSRALAEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTE--ERSQCPHC 74 (314)
Q Consensus 25 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~--~~~~CP~C 74 (314)
..+.+++++.|+||++.+.+|+++ .|||.||+.||.+|+.. ....||+|
T Consensus 13 ~~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 13 FVNKLQEEVICPICLDILQKPVTI-DCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCCCBCTTTCSBCSSCEEC-TTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HHHhCccCCCCCcCCchhCCeEEe-CCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 345577889999999999999998 69999999999999984 24579998
No 34
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.42 E-value=4.5e-14 Score=100.99 Aligned_cols=56 Identities=21% Similarity=0.606 Sum_probs=48.2
Q ss_pred hccccceeccccccccCc-------cccCCCCCcchHHHHHHHHhccCCcccccccccccchhhh
Q psy10334 28 ALAEVFRCFICIEKLRDT-------HLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHMTDLVN 85 (314)
Q Consensus 28 ~~~~~~~C~IC~~~~~~p-------~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~ 85 (314)
..++++.|+||++.+.+| +.+ .|||.||..||.+|+.. ...||.||.++...++.+
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~ 68 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHP 68 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEEC-TTSCEEEHHHHHHHHHH-CSBCTTTCCBCCCCSCCC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeC-CCCChHhHHHHHHHHHc-CCCCCCCCCccChhheee
Confidence 346779999999999998 666 69999999999999987 478999999998777654
No 35
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=6.8e-14 Score=95.96 Aligned_cols=50 Identities=26% Similarity=0.666 Sum_probs=42.6
Q ss_pred hHHHhccccceeccccccccCccccCCCCCcchHHHHHHHHhc--cCCccccc
Q psy10334 24 HVSRALAEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTE--ERSQCPHC 74 (314)
Q Consensus 24 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~--~~~~CP~C 74 (314)
...+.+.+.+.|+||++.+.+|+++ .|||.||+.||.+|+.. ....||+|
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 7 GALENLQVEASCSVCLEYLKEPVII-ECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCSSCSCCCCBCSSSCCBCSSCCCC-SSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred hHhhccccCCCCccCCcccCccEeC-CCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3445677889999999999999997 59999999999999764 34679998
No 36
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.41 E-value=6.5e-14 Score=117.61 Aligned_cols=72 Identities=22% Similarity=0.429 Sum_probs=60.4
Q ss_pred HHHhccccceeccccccccCccccCCCCCcchHHHHHHHHhccCCcccccccccccchhhhhhhhHhhhhhhc
Q psy10334 25 VSRALAEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHMTDLVNCRWMEEVTQHLD 97 (314)
Q Consensus 25 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~~~ 97 (314)
....+++.+.|+||+++|.+|+++ .|||.||+.||.+|+......||.||.++....+.++..+.+++..+.
T Consensus 11 ~~~~~~~~~~C~IC~~~~~~pv~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l~ 82 (170)
T 3hcs_A 11 FDPPLESKYECPICLMALREAVQT-PCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLM 82 (170)
T ss_dssp ESSCCCGGGBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSE
T ss_pred hccCCCCCCCCCCCChhhcCcEEC-CCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhcc
Confidence 445678899999999999999997 599999999999999874458999999998888877777666655543
No 37
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=4.6e-14 Score=100.25 Aligned_cols=54 Identities=22% Similarity=0.636 Sum_probs=46.1
Q ss_pred HHHhccccceeccccccccCc-------cccCCCCCcchHHHHHHHHhccCCccccccccccc
Q psy10334 25 VSRALAEVFRCFICIEKLRDT-------HLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHM 80 (314)
Q Consensus 25 ~~~~~~~~~~C~IC~~~~~~p-------~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 80 (314)
..+.+.+.+.|+||++.+.+| +.+ .|||.||..||.+|+.. ...||+||.++..
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 8 TGLRPSGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp CCCCTTCCCCCTTTCCCHHHHTTTTCCEEEC-SSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred cccCCCCCCCCcccCccccccccccCCeEeC-CCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence 344567889999999999998 666 69999999999999987 5789999998753
No 38
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=1.1e-13 Score=103.24 Aligned_cols=56 Identities=32% Similarity=0.778 Sum_probs=48.0
Q ss_pred HHhccccceeccccccccC----ccccCCCCCcchHHHHHHHHhcc--CCcccccccccccch
Q psy10334 26 SRALAEVFRCFICIEKLRD----THLCPHCSKLCCLACIRQFLTEE--RSQCPHCRASLHMTD 82 (314)
Q Consensus 26 ~~~~~~~~~C~IC~~~~~~----p~~~~~CgH~FC~~Ci~~~~~~~--~~~CP~Cr~~~~~~~ 82 (314)
.+.+.+.+.|+||++.|.+ |+.+ .|||.||..||.+|+... ...||.||.++...+
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 70 (88)
T 2ct2_A 9 LDALREVLECPICMESFTEEQLRPKLL-HCGHTICRQCLEKLLASSINGVRCPFCSKITRITS 70 (88)
T ss_dssp CCCCCSCCBCTTTCCBCCTTSSCEEEC-SSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSS
T ss_pred hhhccCCCCCccCCccccccCCCeEEC-CCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchh
Confidence 4456788999999999999 9988 599999999999999873 357999999887654
No 39
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.38 E-value=1.6e-13 Score=100.24 Aligned_cols=57 Identities=28% Similarity=0.639 Sum_probs=45.7
Q ss_pred Hhccccceecccccccc--CccccC-CCCCcchHHHHHHHHhccCCcccccccccccchh
Q psy10334 27 RALAEVFRCFICIEKLR--DTHLCP-HCSKLCCLACIRQFLTEERSQCPHCRASLHMTDL 83 (314)
Q Consensus 27 ~~~~~~~~C~IC~~~~~--~p~~~~-~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 83 (314)
+.+++++.||||++.+. |++..+ .|||+||+.|+.++|......||.||+++...++
T Consensus 6 ~~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 6 DAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred cccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 34678899999999884 455431 3999999999999997645689999999987654
No 40
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.36 E-value=1.3e-13 Score=96.43 Aligned_cols=53 Identities=23% Similarity=0.666 Sum_probs=45.7
Q ss_pred ccceeccccccccCc-------cccCCCCCcchHHHHHHHHhccCCcccccccccccchhhh
Q psy10334 31 EVFRCFICIEKLRDT-------HLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHMTDLVN 85 (314)
Q Consensus 31 ~~~~C~IC~~~~~~p-------~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~ 85 (314)
+++.|+||++.+.+| +.+ .|||.||..||.+|+.. ...||.||.++...++.+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~ 61 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHP 61 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEE-TTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTTCEEE
T ss_pred CCCCCCccChhhhCccccCCCEEeC-CCCCchhHHHHHHHHHc-CCCCCCCCccCCccceee
Confidence 468899999999998 565 69999999999999987 578999999988766544
No 41
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.36 E-value=2.1e-13 Score=92.55 Aligned_cols=50 Identities=26% Similarity=0.735 Sum_probs=43.1
Q ss_pred ccccceeccccccccC---ccccCCCCCcchHHHHHHHHhccCCcccccccccc
Q psy10334 29 LAEVFRCFICIEKLRD---THLCPHCSKLCCLACIRQFLTEERSQCPHCRASLH 79 (314)
Q Consensus 29 ~~~~~~C~IC~~~~~~---p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 79 (314)
++++..|+||++.+.+ ++.++.|||.||..||.+|+.. +..||.||.++.
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~~ 54 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTVV 54 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCSC
T ss_pred CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEeE
Confidence 4677899999999988 6666569999999999999987 578999998763
No 42
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.34 E-value=1.9e-13 Score=99.71 Aligned_cols=59 Identities=24% Similarity=0.492 Sum_probs=48.3
Q ss_pred HHhccccceeccccccccCcc---ccCCCCCcchHHHHHHHHhccCCcccccccccccchhhhh
Q psy10334 26 SRALAEVFRCFICIEKLRDTH---LCPHCSKLCCLACIRQFLTEERSQCPHCRASLHMTDLVNC 86 (314)
Q Consensus 26 ~~~~~~~~~C~IC~~~~~~p~---~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 86 (314)
.+...+...|+||++.|.++. .+ .|||.||..||.+|+.. ...||+||.++...++..+
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~-~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 9 EEHVGSGLECPVCKEDYALGESVRQL-PCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp CTTSSSSCCCTTTTSCCCTTSCEEEC-TTSCEEETTTTHHHHTT-TCSCTTTCCCCCCSCSCCC
T ss_pred cccCCCCCCCeeCCccccCCCCEEEe-CCCCeecHHHHHHHHHc-CCcCcCcCCccCCcccCCC
Confidence 345667899999999998774 34 59999999999999986 4789999999887666544
No 43
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=7.8e-13 Score=95.37 Aligned_cols=54 Identities=20% Similarity=0.477 Sum_probs=44.5
Q ss_pred HHhccccceeccccccccCcccc--CCCCCcchHHHHHHHHhccCCccccccccccc
Q psy10334 26 SRALAEVFRCFICIEKLRDTHLC--PHCSKLCCLACIRQFLTEERSQCPHCRASLHM 80 (314)
Q Consensus 26 ~~~~~~~~~C~IC~~~~~~p~~~--~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 80 (314)
...+.++..|+||++.|.++..+ ..|||.||..||.+|+.. ...||+||.++..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 9 VKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSS
T ss_pred cccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCccccc
Confidence 34567788999999999987643 149999999999999987 4689999988753
No 44
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=3.2e-13 Score=96.34 Aligned_cols=53 Identities=25% Similarity=0.681 Sum_probs=45.3
Q ss_pred HhccccceeccccccccCccccCCCCCcchHHHHHHHHhccCCcccccccccccch
Q psy10334 27 RALAEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHMTD 82 (314)
Q Consensus 27 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 82 (314)
+.+.+.+.|+||++.+.+ +.+ .|||.||..||.+|+.. ...||.||.++...+
T Consensus 10 ~~~~~~~~C~IC~~~~~~-~~~-~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 10 KQLTDEEECCICMDGRAD-LIL-PCAHSFCQKCIDKWSDR-HRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCCCSSSCCSCCS-EEE-TTTEEECHHHHHHSSCC-CSSCHHHHHCTTCCC
T ss_pred hcCCCCCCCeeCCcCccC-ccc-CCCCcccHHHHHHHHHC-cCcCCCcCCcccCCC
Confidence 456678999999999999 776 59999999999999985 578999999886543
No 45
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.27 E-value=1.3e-12 Score=92.56 Aligned_cols=48 Identities=25% Similarity=0.705 Sum_probs=41.6
Q ss_pred cccceeccccccccCc-cccCCCCCcchHHHHHHHHhccCCcccccccccc
Q psy10334 30 AEVFRCFICIEKLRDT-HLCPHCSKLCCLACIRQFLTEERSQCPHCRASLH 79 (314)
Q Consensus 30 ~~~~~C~IC~~~~~~p-~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 79 (314)
++...|+||++.+.+| +.+ .|||.||..||.+|+.. ...||.||.++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~-~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 51 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMAL-PCLHAFCYVCITRWIRQ-NPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEET-TTTEEESTTHHHHHHHH-SCSTTTTCCCCC
T ss_pred CCCCCCeeCCccccCCcEec-CCCCeeHHHHHHHHHhC-cCcCcCCChhhH
Confidence 4567899999999997 555 69999999999999987 478999998875
No 46
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.26 E-value=1.8e-12 Score=87.78 Aligned_cols=48 Identities=27% Similarity=0.659 Sum_probs=40.7
Q ss_pred cccceeccccccccC----ccccCCCCCcchHHHHHHHHhccCCcccccccccc
Q psy10334 30 AEVFRCFICIEKLRD----THLCPHCSKLCCLACIRQFLTEERSQCPHCRASLH 79 (314)
Q Consensus 30 ~~~~~C~IC~~~~~~----p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 79 (314)
.++..|+||++.+.+ ++.+ .|||.||..||.+|+.. ...||.||.++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVL-PCGHLLHRTCYEEMLKE-GYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEEC-TTSCEEETTHHHHHHHH-TCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEec-CCCCcccHHHHHHHHHc-CCcCCCCCCcCC
Confidence 346789999999976 5665 69999999999999987 478999998764
No 47
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.26 E-value=2.3e-12 Score=96.85 Aligned_cols=50 Identities=22% Similarity=0.584 Sum_probs=43.0
Q ss_pred ccccceeccccccccC---ccccCCCCCcchHHHHHHHHhccCCccccccccccc
Q psy10334 29 LAEVFRCFICIEKLRD---THLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHM 80 (314)
Q Consensus 29 ~~~~~~C~IC~~~~~~---p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 80 (314)
..++..|+||++.|.+ ++.++ |||.||..||..|+.. ...||+||.++..
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQK-SGTCPVCRCMFPP 89 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTT-TCBCTTTCCBSSC
T ss_pred cCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHc-CCcCcCcCccCCC
Confidence 4567899999999987 76775 9999999999999987 5689999988754
No 48
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.25 E-value=1.1e-12 Score=94.91 Aligned_cols=50 Identities=22% Similarity=0.574 Sum_probs=43.1
Q ss_pred ccccceeccccccccCc---cccCCCCCcchHHHHHHHHhccCCccccccccccc
Q psy10334 29 LAEVFRCFICIEKLRDT---HLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHM 80 (314)
Q Consensus 29 ~~~~~~C~IC~~~~~~p---~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 80 (314)
..+...|+||++.|.++ +.+ .|||.||..||.+|+.. ...||+||.++..
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l-~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVL-PCNHEFHAKCVDKWLKA-NRTCPICRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEE-TTTEEEETTHHHHHHHH-CSSCTTTCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEE-CCCCHhHHHHHHHHHHc-CCcCcCcCCcCCC
Confidence 45678999999999987 566 49999999999999987 5689999998764
No 49
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.25 E-value=2.4e-12 Score=91.44 Aligned_cols=51 Identities=27% Similarity=0.637 Sum_probs=42.0
Q ss_pred hccccceecccccccc---CccccCCCCCcchHHHHHHHHhccCCccccccccccc
Q psy10334 28 ALAEVFRCFICIEKLR---DTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHM 80 (314)
Q Consensus 28 ~~~~~~~C~IC~~~~~---~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 80 (314)
...+...|+||++.|. .++.+ .|||.||..||.+|+.. ...||+||.++..
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~-~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRL-PCMHLFHQVCVDQWLIT-NKKCPICRVDIEA 63 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEEC-TTSCEEEHHHHHHHHHH-CSBCTTTCSBSCS
T ss_pred cCCCCCCCeeCCccccCCCcEEEe-CCCCHHHHHHHHHHHHc-CCCCcCcCccccC
Confidence 3456789999999985 34556 59999999999999987 4689999988764
No 50
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.25 E-value=8.9e-13 Score=90.00 Aligned_cols=47 Identities=26% Similarity=0.611 Sum_probs=40.5
Q ss_pred cccceeccccccccCccccCCCCCcchHHHHHHHHhccCCcccccccccccc
Q psy10334 30 AEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHMT 81 (314)
Q Consensus 30 ~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 81 (314)
.+++.|+||++.|.+|+++ .|||+||+.||..| ...||+||.++...
T Consensus 4 ~~~~~C~IC~~~~~~p~~l-~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLL-PCLHTLCSGCLEAS----GMQCPICQAPWPLG 50 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCS-TTSCCSBTTTCSSS----SSSCSSCCSSSSCC
T ss_pred ccCCCceEeCCccCCeEEc-CCCCcccHHHHccC----CCCCCcCCcEeecC
Confidence 5678999999999999998 59999999999883 35799999987643
No 51
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=3.3e-12 Score=93.90 Aligned_cols=51 Identities=20% Similarity=0.528 Sum_probs=42.4
Q ss_pred ccceeccccccccC--------------ccccCCCCCcchHHHHHHHHhccCCcccccccccccch
Q psy10334 31 EVFRCFICIEKLRD--------------THLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHMTD 82 (314)
Q Consensus 31 ~~~~C~IC~~~~~~--------------p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 82 (314)
++..|+||++.|.+ ++.++.|||.||..||.+|+.. +..||+||.++....
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~~~ 78 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWVVQR 78 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCCEEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcchhh
Confidence 46779999999987 4455579999999999999987 468999999876544
No 52
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.22 E-value=2.5e-12 Score=102.91 Aligned_cols=54 Identities=22% Similarity=0.646 Sum_probs=46.8
Q ss_pred cccceeccccccccCc-------cccCCCCCcchHHHHHHHHhccCCcccccccccccchhhh
Q psy10334 30 AEVFRCFICIEKLRDT-------HLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHMTDLVN 85 (314)
Q Consensus 30 ~~~~~C~IC~~~~~~p-------~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~ 85 (314)
.+++.|+||++.|.+| +.+ .|||.||..||.+|+.. ...||.||..+....+.+
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~ 65 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHP 65 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEE-TTCCEEEHHHHHHHHTT-CSBCTTTCCBCTTTCEEE
T ss_pred CCCCCCcccChhhhCccccccCeEec-CCCChhhHHHHHHHHHh-CCCCCCCCCcCccccccc
Confidence 5679999999999999 776 69999999999999987 468999999987666544
No 53
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.20 E-value=3.1e-12 Score=92.42 Aligned_cols=51 Identities=25% Similarity=0.618 Sum_probs=44.1
Q ss_pred hHHHhccccceeccccccccCccccCCCCCc-chHHHHHHHHhccCCccccccccccc
Q psy10334 24 HVSRALAEVFRCFICIEKLRDTHLCPHCSKL-CCLACIRQFLTEERSQCPHCRASLHM 80 (314)
Q Consensus 24 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 80 (314)
...+.+++++.|+||++.+.+|+.+ +|||. ||..|+..| ..||.||.++..
T Consensus 16 ~~~~~~~~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 16 EQLRRLQEEKLCKICMDRNIAIVFV-PCGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HHHHHHHHHTBCTTTSSSBCCEEEE-TTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred HHHhcCccCCCCCCCCCCCCCEEEc-CCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 3455677889999999999999998 59999 999999988 479999998764
No 54
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.17 E-value=1.2e-11 Score=96.65 Aligned_cols=50 Identities=30% Similarity=0.611 Sum_probs=40.7
Q ss_pred ccceeccccccccCcc------------------ccCCCCCcchHHHHHHHHhc----cCCcccccccccccc
Q psy10334 31 EVFRCFICIEKLRDTH------------------LCPHCSKLCCLACIRQFLTE----ERSQCPHCRASLHMT 81 (314)
Q Consensus 31 ~~~~C~IC~~~~~~p~------------------~~~~CgH~FC~~Ci~~~~~~----~~~~CP~Cr~~~~~~ 81 (314)
.+..|+||++.|.+|+ .+ .|||.||..||..|+.. ....||+||..+...
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLT-KCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEES-SSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecC-CCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 3468999999998875 44 69999999999999953 245899999988643
No 55
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.13 E-value=1.3e-11 Score=85.60 Aligned_cols=55 Identities=16% Similarity=0.283 Sum_probs=48.2
Q ss_pred cceeccccccccCccccCCCCCcchHHHHHHHHhccCCcccccccccccchhhhhh
Q psy10334 32 VFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHMTDLVNCR 87 (314)
Q Consensus 32 ~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~ 87 (314)
.+.||||+++++|||.++.|||.|++.||++|+.. +..||+.+.++...+++++.
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~~~~Lip~~ 57 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVEIV 57 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGGGCEECC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCChhhcEECc
Confidence 47899999999999987459999999999999987 35799999999988888764
No 56
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=2.7e-11 Score=87.58 Aligned_cols=51 Identities=25% Similarity=0.604 Sum_probs=42.6
Q ss_pred hHHHhccccceeccccccccCccccCCCCCc-chHHHHHHHHhccCCccccccccccc
Q psy10334 24 HVSRALAEVFRCFICIEKLRDTHLCPHCSKL-CCLACIRQFLTEERSQCPHCRASLHM 80 (314)
Q Consensus 24 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 80 (314)
...+.++++..|+||++.+.+|+.+ +|||. ||..|+.. ...||.||.++..
T Consensus 17 ~~~~~~~~~~~C~IC~~~~~~~~~~-pCgH~~~C~~C~~~-----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 17 EQLRRLQEEKLCKICMDRNIAIVFV-PCGHLVTCKQCAEA-----VDKCPMCYTVITF 68 (75)
T ss_dssp HHHHHHHHHHSCSSSCSSCCCBCCS-SSCCCCBCHHHHHH-----CSBCTTTCCBCCC
T ss_pred HHHHcCCCCCCCCcCCCCCCCEEEe-cCCCHHHHHHHhhC-----CCCCccCCceecC
Confidence 4445667789999999999999998 59999 99999963 2579999998864
No 57
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.06 E-value=3.2e-11 Score=96.35 Aligned_cols=54 Identities=22% Similarity=0.646 Sum_probs=47.0
Q ss_pred cccceeccccccccCc-------cccCCCCCcchHHHHHHHHhccCCcccccccccccchhhh
Q psy10334 30 AEVFRCFICIEKLRDT-------HLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHMTDLVN 85 (314)
Q Consensus 30 ~~~~~C~IC~~~~~~p-------~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~ 85 (314)
++...|+||++.|.+| +.+ .|||.||..||.+|+.. ...||+||.++...++.+
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~ 130 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHP 130 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEE-TTSBEEEHHHHHHHHHH-CSBCTTTCCBCCGGGEEE
T ss_pred CCCCCCCCCCCccccccccCcceEeC-CCCChhhHHHHHHHHHc-CCCCCCCCCcCChhccee
Confidence 5678999999999987 665 69999999999999987 578999999998777654
No 58
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.04 E-value=6.9e-11 Score=110.42 Aligned_cols=53 Identities=28% Similarity=0.693 Sum_probs=45.0
Q ss_pred cccceeccccccccCccccCCCCCcchHHHHHHHHhccCCcccccccccccchh
Q psy10334 30 AEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHMTDL 83 (314)
Q Consensus 30 ~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 83 (314)
.....|+||++.+.+|+.+ .|||.||..||..|+......||+||.++.....
T Consensus 330 ~~~~~C~ICle~~~~pv~l-pCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~ 382 (389)
T 2y1n_A 330 STFQLCKICAENDKDVKIE-PCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEP 382 (389)
T ss_dssp TSSSBCTTTSSSBCCEEEE-TTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEEE
T ss_pred CCCCCCCccCcCCCCeEEe-CCCChhhHHHHHHHHhcCCCCCCCCCCccCCcee
Confidence 3447999999999999987 5999999999999998435689999998876543
No 59
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.01 E-value=7.4e-11 Score=82.64 Aligned_cols=48 Identities=21% Similarity=0.692 Sum_probs=41.8
Q ss_pred cccceeccccccccCcccc--CCCCCc-chHHHHHHHHhccCCcccccccccc
Q psy10334 30 AEVFRCFICIEKLRDTHLC--PHCSKL-CCLACIRQFLTEERSQCPHCRASLH 79 (314)
Q Consensus 30 ~~~~~C~IC~~~~~~p~~~--~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~~ 79 (314)
+++..|+||++.+.+++.+ | |||. ||..|+.+|+.. ...||+||.++.
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~p-CgH~~~C~~C~~~~~~~-~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGK-TGHLMACFTCAKKLKKR-NKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETT-EEEEEECHHHHHHHHHT-TCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCCEEEECCC-CCChhhHHHHHHHHHHc-CCcCCCcCcchh
Confidence 3567899999999999965 5 9999 899999999976 468999999875
No 60
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.99 E-value=9.3e-11 Score=88.51 Aligned_cols=67 Identities=19% Similarity=0.570 Sum_probs=48.8
Q ss_pred cccceeccccccccCcccc--CCCCCcchHHHHHHHHhcc-------CCcccc--cccc--cccchhhhhhhhHhhhhhh
Q psy10334 30 AEVFRCFICIEKLRDTHLC--PHCSKLCCLACIRQFLTEE-------RSQCPH--CRAS--LHMTDLVNCRWMEEVTQHL 96 (314)
Q Consensus 30 ~~~~~C~IC~~~~~~p~~~--~~CgH~FC~~Ci~~~~~~~-------~~~CP~--Cr~~--~~~~~~~~~~~~~~~~~~~ 96 (314)
.+.++|+||++.+.+|+++ ..|||.||+.||..+|... ...||. |+.. +....+. +....++.+.+
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~-~ll~~~~~~ky 81 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIE-CMVAAEIMQRY 81 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHH-HHSCHHHHHHH
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHH-HHCCHHHHHHH
Confidence 3578999999999999864 3599999999999999742 136999 9988 6554443 33334555555
Q ss_pred c
Q psy10334 97 D 97 (314)
Q Consensus 97 ~ 97 (314)
+
T Consensus 82 ~ 82 (94)
T 1wim_A 82 K 82 (94)
T ss_dssp H
T ss_pred H
Confidence 4
No 61
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.99 E-value=1.5e-10 Score=89.29 Aligned_cols=49 Identities=24% Similarity=0.489 Sum_probs=40.8
Q ss_pred ccceeccccccccCc-----------------cccCCCCCcchHHHHHHHHhccCCccccccccccc
Q psy10334 31 EVFRCFICIEKLRDT-----------------HLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHM 80 (314)
Q Consensus 31 ~~~~C~IC~~~~~~p-----------------~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 80 (314)
++..|+||++.|.++ +.+..|||.||..||..|+.. +..||+||.++..
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWEF 101 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCCE
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCccee
Confidence 457899999999977 232369999999999999987 5789999998653
No 62
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.98 E-value=7.6e-11 Score=86.15 Aligned_cols=50 Identities=34% Similarity=0.925 Sum_probs=42.7
Q ss_pred HHHhccccceeccccccccCccccCCCCCc-chHHHHHHHHhccCCccccccccccc
Q psy10334 25 VSRALAEVFRCFICIEKLRDTHLCPHCSKL-CCLACIRQFLTEERSQCPHCRASLHM 80 (314)
Q Consensus 25 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 80 (314)
..+.++++..|+||++.+.+|+.+| |||. ||..|+..|+ .||.||.++..
T Consensus 11 ~~~~l~~~~~C~IC~~~~~~~v~~p-CgH~~~C~~C~~~~~-----~CP~Cr~~i~~ 61 (79)
T 2yho_A 11 KLRKLKEAMLCMVCCEEEINSTFCP-CGHTVCCESCAAQLQ-----SCPVCRSRVEH 61 (79)
T ss_dssp HHHHHHHHTBCTTTSSSBCCEEEET-TCBCCBCHHHHTTCS-----BCTTTCCBCCE
T ss_pred HHHcCCCCCEeEEeCcccCcEEEEC-CCCHHHHHHHHHhcC-----cCCCCCchhhC
Confidence 3455677889999999999999985 9999 9999998773 79999998764
No 63
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.98 E-value=1.3e-10 Score=81.13 Aligned_cols=47 Identities=23% Similarity=0.680 Sum_probs=40.9
Q ss_pred ccceeccccccccCcccc--CCCCCc-chHHHHHHHHhccCCcccccccccc
Q psy10334 31 EVFRCFICIEKLRDTHLC--PHCSKL-CCLACIRQFLTEERSQCPHCRASLH 79 (314)
Q Consensus 31 ~~~~C~IC~~~~~~p~~~--~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~~ 79 (314)
....|+||++.+.|++.+ | |||. ||..|+.+|+.. ...||+||.++.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~p-CgH~~~C~~C~~~~~~~-~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGR-TGHLVTCFHCARRLKKA-GASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETT-EEEEEECHHHHHHHHHT-TCBCTTTCCBCC
T ss_pred cCCCCcccCCcCCCeEEEecC-CCCHhHHHHHHHHHHHh-CCcCCCcCchhh
Confidence 356799999999999865 5 9999 999999999876 468999999875
No 64
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.86 E-value=2.7e-10 Score=89.17 Aligned_cols=48 Identities=25% Similarity=0.512 Sum_probs=0.4
Q ss_pred cceeccccccccCc-----------------cccCCCCCcchHHHHHHHHhccCCccccccccccc
Q psy10334 32 VFRCFICIEKLRDT-----------------HLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHM 80 (314)
Q Consensus 32 ~~~C~IC~~~~~~p-----------------~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 80 (314)
+-.|+||++.|.++ +..+.|||.||..||.+|+.. +..||+||.++..
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWEF 112 (117)
T ss_dssp C-----------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeeee
Confidence 46899999999874 232369999999999999987 5789999988653
No 65
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.77 E-value=9.2e-10 Score=102.05 Aligned_cols=51 Identities=27% Similarity=0.648 Sum_probs=43.9
Q ss_pred hHHHhccccceeccccccccCccccCCCCCc-chHHHHHHHHhccCCccccccccccc
Q psy10334 24 HVSRALAEVFRCFICIEKLRDTHLCPHCSKL-CCLACIRQFLTEERSQCPHCRASLHM 80 (314)
Q Consensus 24 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 80 (314)
...+.+++++.|+||++.+.+|+.+ +|||. ||..|+..| ..||.||.++..
T Consensus 287 ~~~~~l~~~~~C~IC~~~~~~~v~l-pCgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 287 EQLRRLQEERTCKVCMDKEVSVVFI-PCGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp HHHHHHHTTCBCTTTSSSBCCEEEE-TTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred HHHHhCcCCCCCCccCCcCCceEEc-CCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 3345667889999999999999998 59999 999999987 479999998763
No 66
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.74 E-value=2.2e-09 Score=76.00 Aligned_cols=45 Identities=27% Similarity=0.654 Sum_probs=38.8
Q ss_pred cccceeccccccccCccccCCCCCc-chHHHHHHHHhccCCccccccccccc
Q psy10334 30 AEVFRCFICIEKLRDTHLCPHCSKL-CCLACIRQFLTEERSQCPHCRASLHM 80 (314)
Q Consensus 30 ~~~~~C~IC~~~~~~p~~~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 80 (314)
.+...|.||++.+.+++.+| |||. ||..|+.. ...||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~~v~~p-CgH~~~C~~C~~~-----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLLP-CRHTCLCDGCVKY-----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCCCCEETT-TTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCCCEEEEC-CCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence 45788999999999999985 9999 99999983 2579999998764
No 67
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.65 E-value=1.2e-08 Score=73.19 Aligned_cols=50 Identities=26% Similarity=0.647 Sum_probs=42.3
Q ss_pred cccceeccccccccCccccCCCCCcchHHHHHHHHhcc-CCcccccccccc
Q psy10334 30 AEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEE-RSQCPHCRASLH 79 (314)
Q Consensus 30 ~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~-~~~CP~Cr~~~~ 79 (314)
+....|.||.+++..-..++.|+|.|...||.+|+... ...||.||.+..
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 45578999999998766677899999999999999873 268999998764
No 68
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.63 E-value=1.4e-08 Score=74.09 Aligned_cols=51 Identities=20% Similarity=0.453 Sum_probs=40.9
Q ss_pred cccceecccccccc--CccccCCCC-----CcchHHHHHHHHhccC-Ccccccccccccc
Q psy10334 30 AEVFRCFICIEKLR--DTHLCPHCS-----KLCCLACIRQFLTEER-SQCPHCRASLHMT 81 (314)
Q Consensus 30 ~~~~~C~IC~~~~~--~p~~~~~Cg-----H~FC~~Ci~~~~~~~~-~~CP~Cr~~~~~~ 81 (314)
.++..|.||++.+. +++.+ .|+ |.|+..||.+|+.... ..||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~-pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLIT-PCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEEC-SSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCCeEcCccccCCCeeEe-ccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 45678999998874 57766 486 9999999999998742 5899999988643
No 69
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=98.14 E-value=3.8e-08 Score=74.92 Aligned_cols=91 Identities=12% Similarity=0.204 Sum_probs=58.5
Q ss_pred ccceeccccc-cccCccc--cCCCCCcchHHHHHHHHhccCCcccccccccccchhhhhhhhHhhhhhhccccccccccc
Q psy10334 31 EVFRCFICIE-KLRDTHL--CPHCSKLCCLACIRQFLTEERSQCPHCRASLHMTDLVNCRWMEEVTQHLDNLQMNSKSSL 107 (314)
Q Consensus 31 ~~~~C~IC~~-~~~~p~~--~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~~~~l~~ds~sal 107 (314)
+++.|+||.+ ++.+|+. + .|||+||..|+..++..... +..-. ++..+...
T Consensus 2 ee~~C~~C~~~~~~~av~~C~-~C~~~~C~~Cl~~~h~~~~~--------~~~h~---------l~~~~~~~-------- 55 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCV-TCEVSYCDECLKATHPNKKP--------FTGHR---------LIEPIPDS-------- 55 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEET-TTTEEECHHHHHHHSCSCSS--------STTCC---------BSSCCCSC--------
T ss_pred CCCCCcCCCCCCCCCceEECC-cCChHHhHHHCHHHhccCCc--------cCCCe---------eecccccc--------
Confidence 4688999996 5788986 5 69999999999985432111 10000 00000000
Q ss_pred cccccCCCChhhhHHH-HHHHHHHHhhcCCcceEEEe-----cCCCCCCcCh
Q psy10334 108 QTYQRLFPNSTLCLNV-KNLLSELKLKYGLSIKLVWI-----PGHMNISGNC 153 (314)
Q Consensus 108 ~~l~~~~~~~~~c~~~-~~~l~~~~~~d~~~i~~~w~-----p~H~~i~~ne 153 (314)
......|..| .+.+..||.+|+..||..|. .||..++++|
T Consensus 56 ------~~~~~~C~~H~~e~l~~fC~~~~~~iC~~C~~~~~H~~H~~~~l~e 101 (101)
T 2jun_A 56 ------HIRGLMCLEHEDEKVNMYCVTDDQLICALCKLVGRHRDHQVAALSE 101 (101)
T ss_dssp ------CSSCCCCSSCSSSCCCEEETTTTEEECHHHHHHTTTSSSCBCCCCC
T ss_pred ------CccCCcCcCcCCCcceEECCCCCCccchhcCCCCCcCCCCeecCCC
Confidence 0112357788 47899999999999999985 3666666553
No 70
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.13 E-value=9.7e-07 Score=65.87 Aligned_cols=46 Identities=17% Similarity=0.478 Sum_probs=37.6
Q ss_pred eeccccccccC-ccccCCCCCcchHHHHHHHHhccCCccccccccccc
Q psy10334 34 RCFICIEKLRD-THLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHM 80 (314)
Q Consensus 34 ~C~IC~~~~~~-p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 80 (314)
-|++|.-.+.. -.++ +|+|.||++|+..|.+.+...||.|+.++..
T Consensus 3 fC~~C~~Pi~iygRmI-PCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMI-PCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEE-TTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeec-cccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 38889887775 3355 5999999999999997655789999998864
No 71
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.02 E-value=1e-06 Score=80.31 Aligned_cols=50 Identities=32% Similarity=0.803 Sum_probs=39.4
Q ss_pred cccceeccccccccC----ccc-c--CCCCCcchHHHHHHHHhcc-C---------Ccccccccccc
Q psy10334 30 AEVFRCFICIEKLRD----THL-C--PHCSKLCCLACIRQFLTEE-R---------SQCPHCRASLH 79 (314)
Q Consensus 30 ~~~~~C~IC~~~~~~----p~~-~--~~CgH~FC~~Ci~~~~~~~-~---------~~CP~Cr~~~~ 79 (314)
+....|+||++++.+ |.. + +.|||.|...||.+|+... . ..||.||.+++
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 456789999999987 421 2 3799999999999999752 1 36999999876
No 72
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.01 E-value=4.8e-06 Score=57.06 Aligned_cols=50 Identities=24% Similarity=0.571 Sum_probs=39.4
Q ss_pred cccceeccccccccCccccCCCC--C---cchHHHHHHHHhcc-CCccccccccccc
Q psy10334 30 AEVFRCFICIEKLRDTHLCPHCS--K---LCCLACIRQFLTEE-RSQCPHCRASLHM 80 (314)
Q Consensus 30 ~~~~~C~IC~~~~~~p~~~~~Cg--H---~FC~~Ci~~~~~~~-~~~CP~Cr~~~~~ 80 (314)
++...|.||++...+|... +|. + .|...|+.+|+... +..||+|+.++..
T Consensus 4 ~~~~~CrIC~~~~~~~l~~-PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFR-ACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CSCCEETTTTEECSCCCCC-SCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCEeEEeecCCCCceec-CcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 3567899999887777765 465 4 89999999999863 4689999988753
No 73
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=97.73 E-value=8.4e-06 Score=65.98 Aligned_cols=29 Identities=21% Similarity=0.202 Sum_probs=26.1
Q ss_pred cceEEEecCCCCCCcChhHhHHHhhhcCC
Q psy10334 137 SIKLVWIPGHMNISGNCAVDLAAKQAQTS 165 (314)
Q Consensus 137 ~i~~~w~p~H~~i~~ne~Ad~~a~~a~~~ 165 (314)
.|.|.|||||.+.++||.||.+|++|+..
T Consensus 116 ~v~~~~V~gH~g~~~N~~AD~LA~~a~~~ 144 (146)
T 3h08_A 116 RVTFHKVKGHSDNPYNSRADELARLAIKE 144 (146)
T ss_dssp EEEEEECCC-CCSHHHHHHHHHHHHHHHH
T ss_pred ceEEEEcCCcCCcHhHHHHHHHHHHHHHh
Confidence 69999999999999999999999999754
No 74
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=97.56 E-value=1.5e-05 Score=65.25 Aligned_cols=34 Identities=29% Similarity=0.424 Sum_probs=30.6
Q ss_pred CCcceEEEecCCCCCCcChhHhHHHhhhcCCCCc
Q psy10334 135 GLSIKLVWIPGHMNISGNCAVDLAAKQAQTSPDA 168 (314)
Q Consensus 135 ~~~i~~~w~p~H~~i~~ne~Ad~~a~~a~~~~~~ 168 (314)
...|.|.|||||.+.++||.||.+|++|+..+..
T Consensus 113 ~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~~~ 146 (155)
T 1jl1_A 113 QHQIKWEWVKGHAGHPENERADELARAAAMNPTL 146 (155)
T ss_dssp TCEEEEEECCSSTTCHHHHHHHHHHHHHHHSCCB
T ss_pred cCceEEEEcCCCCCCHHHHHHHHHHHHHHhccch
Confidence 3579999999999999999999999999987654
No 75
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=97.50 E-value=2.5e-05 Score=64.14 Aligned_cols=30 Identities=27% Similarity=0.417 Sum_probs=28.4
Q ss_pred CcceEEEecCCCCCCcChhHhHHHhhhcCC
Q psy10334 136 LSIKLVWIPGHMNISGNCAVDLAAKQAQTS 165 (314)
Q Consensus 136 ~~i~~~w~p~H~~i~~ne~Ad~~a~~a~~~ 165 (314)
..|.|.|||||.+.++||.||.+|++|+..
T Consensus 116 ~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~ 145 (158)
T 2e4l_A 116 HQIDWRWVKGHAGHAENERCDQLARAAAEA 145 (158)
T ss_dssp SEEEEEECCTTCCCHHHHHHHHHHHHHHHS
T ss_pred CcEEEEEccCCCCchhHHHHHHHHHHHHHh
Confidence 579999999999999999999999999976
No 76
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=97.49 E-value=3e-05 Score=63.31 Aligned_cols=32 Identities=28% Similarity=0.559 Sum_probs=29.0
Q ss_pred CCcceEEEecCCCCCCcChhHhHHHhhhcCCC
Q psy10334 135 GLSIKLVWIPGHMNISGNCAVDLAAKQAQTSP 166 (314)
Q Consensus 135 ~~~i~~~w~p~H~~i~~ne~Ad~~a~~a~~~~ 166 (314)
+..|.|.|||+|.++++||.||.+|++|+..+
T Consensus 121 ~~~v~~~~V~~H~g~~~N~~AD~LA~~a~~~~ 152 (154)
T 2qkb_A 121 GMDIQWMHVPGHSGFIGNEEADRLAREGAKQS 152 (154)
T ss_dssp TCEEEEEECCTTSSCHHHHHHHHHHHHHHTCC
T ss_pred CCceEEEEccCCCCCHhHHHHHHHHHHHHHhc
Confidence 45699999999999999999999999998764
No 77
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=97.32 E-value=0.00014 Score=59.10 Aligned_cols=32 Identities=28% Similarity=0.465 Sum_probs=29.1
Q ss_pred cCCcceEEEecCCCCCCcChhHhHHHhhhcCC
Q psy10334 134 YGLSIKLVWIPGHMNISGNCAVDLAAKQAQTS 165 (314)
Q Consensus 134 d~~~i~~~w~p~H~~i~~ne~Ad~~a~~a~~~ 165 (314)
....|.+.|||||.++++||.||++|++|+..
T Consensus 116 ~~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~ 147 (150)
T 3qio_A 116 KKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRK 147 (150)
T ss_dssp TCSEEEEEECCTTSCCHHHHHHHHHHHTTTSC
T ss_pred hcCceEEEEccCcCCChhHHHHHHHHHHHHHH
Confidence 35689999999999999999999999999864
No 78
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=97.22 E-value=7.8e-05 Score=61.71 Aligned_cols=34 Identities=26% Similarity=0.403 Sum_probs=30.1
Q ss_pred cCCcceEEEecCCCC-----CCcChhHhHHHhhhcCCCC
Q psy10334 134 YGLSIKLVWIPGHMN-----ISGNCAVDLAAKQAQTSPD 167 (314)
Q Consensus 134 d~~~i~~~w~p~H~~-----i~~ne~Ad~~a~~a~~~~~ 167 (314)
.+..|.|.|||||.+ +++||.||++|++|+..+.
T Consensus 120 ~~~~v~~~wVkgH~g~~~~~~~gNe~AD~LA~~aa~~~~ 158 (165)
T 3p1g_A 120 LPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAMKAV 158 (165)
T ss_dssp SBSEEEEEECCSSCCSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCceEEEEecCCCCCCcCcchHHHHHHHHHHHHHhcCC
Confidence 456899999999999 9999999999999987543
No 79
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=97.19 E-value=6.6e-05 Score=62.14 Aligned_cols=32 Identities=22% Similarity=0.351 Sum_probs=29.2
Q ss_pred CcceEEEecCCCCCCcChhHhHHHhhhcCCCC
Q psy10334 136 LSIKLVWIPGHMNISGNCAVDLAAKQAQTSPD 167 (314)
Q Consensus 136 ~~i~~~w~p~H~~i~~ne~Ad~~a~~a~~~~~ 167 (314)
..|.|.|||||.+.++||.||.+|++|+....
T Consensus 119 ~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~~~ 150 (166)
T 1ril_A 119 HRVRFHFVKGHTGHPENERVDREARRQAQSQA 150 (166)
T ss_dssp SEEECCCCCGGGSCTHHHHHHHHHHHHHTSSC
T ss_pred CeEEEEEeeCCCCchhHHHHHHHHHHHHHHhh
Confidence 47999999999999999999999999988654
No 80
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.19 E-value=0.00023 Score=62.42 Aligned_cols=49 Identities=27% Similarity=0.653 Sum_probs=42.1
Q ss_pred cceeccccccccCccccCCCCCcchHHHHHHHHhcc-CCccccccccccc
Q psy10334 32 VFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEE-RSQCPHCRASLHM 80 (314)
Q Consensus 32 ~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~-~~~CP~Cr~~~~~ 80 (314)
...|.||.+++..-+.|+.|++.|...|+..|+... ...||.|+.+...
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 577999999999888887899999999999999864 3589999986543
No 81
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=97.10 E-value=0.00011 Score=59.45 Aligned_cols=32 Identities=25% Similarity=0.102 Sum_probs=29.3
Q ss_pred cceEEEecCCCCCCcChhHhHHHhhhcCCCCc
Q psy10334 137 SIKLVWIPGHMNISGNCAVDLAAKQAQTSPDA 168 (314)
Q Consensus 137 ~i~~~w~p~H~~i~~ne~Ad~~a~~a~~~~~~ 168 (314)
.|.|.|||||.++++||.||++|++|+.....
T Consensus 109 ~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~~~ 140 (147)
T 2kq2_A 109 IYSFEKVKAHSGNEFNDYVDMKAKSALGIRDL 140 (147)
T ss_dssp TCCBCCCCCCCCCHHHHHHHHHHHHHHTCCCT
T ss_pred CeeEEEecCcCCCcchHHHHHHHHHHHhcccc
Confidence 79999999999999999999999999986543
No 82
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=96.90 E-value=0.00064 Score=69.88 Aligned_cols=68 Identities=16% Similarity=0.181 Sum_probs=60.0
Q ss_pred hccccceeccccccccCccccCCCC-CcchHHHHHHHHhccCCcccccccccccchhhhhhhhHhhhhhhc
Q psy10334 28 ALAEVFRCFICIEKLRDTHLCPHCS-KLCCLACIRQFLTEERSQCPHCRASLHMTDLVNCRWMEEVTQHLD 97 (314)
Q Consensus 28 ~~~~~~~C~IC~~~~~~p~~~~~Cg-H~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~~~ 97 (314)
.+.+++.|||=+++++|||+++ -| ++|=+..|++|+.. ..+||.=|.++....+++|..|...++...
T Consensus 887 ~iP~~F~cPIs~~lM~DPVilp-sG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~ 955 (968)
T 3m62_A 887 DVPDEFLDPLMYTIMKDPVILP-ASKMNIDRSTIKAHLLS-DSTDPFNRMPLKLEDVTPNEELRQKILCFK 955 (968)
T ss_dssp CSCGGGBCTTTCSBCSSEEECT-TTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHH
T ss_pred CCcHHhCCcchhhHHhCCeEcC-CCCEEECHHHHHHHHhc-CCCCCCCCCCCCcccccccHHHHHHHHHHH
Confidence 3457899999999999999985 67 69999999999987 578999999999999999999888877764
No 83
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=96.48 E-value=0.0015 Score=64.23 Aligned_cols=60 Identities=22% Similarity=0.345 Sum_probs=40.9
Q ss_pred ccccccccccccccCCC--ChhhhHHHHHHHHHHHhhcCCcceEEEecCCCCCCcChhHhHHHhhhc
Q psy10334 99 LQMNSKSSLQTYQRLFP--NSTLCLNVKNLLSELKLKYGLSIKLVWIPGHMNISGNCAVDLAAKQAQ 163 (314)
Q Consensus 99 l~~ds~sal~~l~~~~~--~~~~c~~~~~~l~~~~~~d~~~i~~~w~p~H~~i~~ne~Ad~~a~~a~ 163 (314)
+.+||+.++..+..... ..++.. +.+.+.. .+..|.+.|||||.++++||.||.+|++|+
T Consensus 494 I~tDS~~v~~~i~~~~~~~~~~l~~---~~~~~~~--~~~~v~~~wV~~H~g~~~Ne~AD~LA~~a~ 555 (555)
T 1mu2_A 494 IIVDSQYVMGIVASQPTESESKIVN---QIIEEMI--KKEAIYVAWVPAHKGIGGNQEVDHLVSQGI 555 (555)
T ss_dssp EEESCHHHHHHHHTCCSEESCHHHH---HHHHHHH--HCSEEEEEECCSSSCCTTHHHHHHHHHTTC
T ss_pred EEEehHHHHHHHhcccccccHHHHH---HHHHHhc--cCCcEEEEEEECCCCChhHHHHHHHHHhhC
Confidence 56677766665554322 223322 3333332 245799999999999999999999999984
No 84
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=96.40 E-value=0.0016 Score=53.72 Aligned_cols=29 Identities=28% Similarity=0.289 Sum_probs=25.4
Q ss_pred CcceEEEecCCCCC------CcChhHhHHHhhhcC
Q psy10334 136 LSIKLVWIPGHMNI------SGNCAVDLAAKQAQT 164 (314)
Q Consensus 136 ~~i~~~w~p~H~~i------~~ne~Ad~~a~~a~~ 164 (314)
..|.|.||+||.+. ++||.||++|++|+.
T Consensus 128 ~~v~~~~VkgH~g~~~~~~~~gNe~AD~LA~~gA~ 162 (165)
T 2lsn_A 128 PDITIQHEKGHQPTNTSIHTEGNALADKLATQGSY 162 (165)
T ss_dssp TTCEEEECCSSSCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEeCCCCccCCCCChHHHHHHHHHHHhhh
Confidence 46999999999985 479999999999974
No 85
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=96.11 E-value=0.0021 Score=63.17 Aligned_cols=59 Identities=25% Similarity=0.384 Sum_probs=38.6
Q ss_pred ccccccccccccccCCCC--hhhhHHHHHHHHHHHhhcCCcceEEEecCCCCCCcChhHhHHHhhh
Q psy10334 99 LQMNSKSSLQTYQRLFPN--STLCLNVKNLLSELKLKYGLSIKLVWIPGHMNISGNCAVDLAAKQA 162 (314)
Q Consensus 99 l~~ds~sal~~l~~~~~~--~~~c~~~~~~l~~~~~~d~~~i~~~w~p~H~~i~~ne~Ad~~a~~a 162 (314)
+.+||+.++..+...... ..+. .+.+....+ ...|.+.|||||.++++||.||.+|++|
T Consensus 497 I~tDS~~vi~~i~~~~~~~~~~l~---~~~~~~l~~--~~~v~~~wV~~H~g~~~Ne~AD~LA~~a 557 (557)
T 2zd1_A 497 IVTDSQYALGIIQAQPDKSESELV---NQIIEQLIK--KEKVYLAWVPAHKGIGGNEQVDKLVSAG 557 (557)
T ss_dssp EEECCHHHHHHHTTCCSEESSHHH---HHHHHHHHH--CSEEEEEECCSSSCCTTCCGGGGCC---
T ss_pred EEeChHHHHHHHhcCCccCCHHHH---HHHHHHHhc--CCCEEEEEcCCCCCChhHHHHHHHHhcC
Confidence 567887777666554332 2222 233333432 3479999999999999999999999986
No 86
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=94.15 E-value=0.018 Score=40.75 Aligned_cols=43 Identities=35% Similarity=0.834 Sum_probs=33.5
Q ss_pred cccceeccccccccCccccCCC----CCcchHHHHHHHHhcc----CCcccc
Q psy10334 30 AEVFRCFICIEKLRDTHLCPHC----SKLCCLACIRQFLTEE----RSQCPH 73 (314)
Q Consensus 30 ~~~~~C~IC~~~~~~p~~~~~C----gH~FC~~Ci~~~~~~~----~~~CP~ 73 (314)
...+.|.+|.+-++|.... +| +|.||..|-+..++.+ ...||-
T Consensus 13 ~a~l~CtlC~erLEdtHFV-QCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPS 63 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFV-QCPSVPSHKFCFPCSRESIKAQGATGEVYCPS 63 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSE-ECSSCSSCEECHHHHHHHHHHHHSSSCCCCTT
T ss_pred CCeeEeecchhhhccCcee-eCCCccCCeeeccccHHHHHhcCCCCcEECCC
Confidence 4568999999999997643 34 6999999999998863 234665
No 87
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=92.25 E-value=0.00064 Score=44.91 Aligned_cols=39 Identities=15% Similarity=0.158 Sum_probs=33.2
Q ss_pred hhhHHHHHHHHHHHhhcCCcceEEEe-----cCCCCCCcChhHh
Q psy10334 118 TLCLNVKNLLSELKLKYGLSIKLVWI-----PGHMNISGNCAVD 156 (314)
Q Consensus 118 ~~c~~~~~~l~~~~~~d~~~i~~~w~-----p~H~~i~~ne~Ad 156 (314)
..|..|.+.++.||++|+..||..|. .+|.+++++|+++
T Consensus 9 ~~C~~H~e~l~lfC~~d~~~iC~~C~~~~~H~~H~~~~l~ea~~ 52 (53)
T 2did_A 9 SLCPQHHEALSLFCYEDQEAVCLICAISHTHRAHTVVPLSGPSS 52 (53)
T ss_dssp CBCTTTCCBCCEEESSSCSEECHHHHTSSTTTTSCEEECCCTTT
T ss_pred CcChhhCCeeeEEeCCCCeEEeccccCCCCCCCCcEeeHHHHhc
Confidence 46888999999999999999999995 3788888888764
No 88
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=92.01 E-value=0.17 Score=39.39 Aligned_cols=61 Identities=18% Similarity=0.181 Sum_probs=36.6
Q ss_pred ccccccccccccccCC--CChhhhHHHHHHHHHHHhhcCCcceEEEecCCCCCCcChhHhHHHhhhcC
Q psy10334 99 LQMNSKSSLQTYQRLF--PNSTLCLNVKNLLSELKLKYGLSIKLVWIPGHMNISGNCAVDLAAKQAQT 164 (314)
Q Consensus 99 l~~ds~sal~~l~~~~--~~~~~c~~~~~~l~~~~~~d~~~i~~~w~p~H~~i~~ne~Ad~~a~~a~~ 164 (314)
+.+||+..+..+.... ....+...+.+...+..+ .-..|.|.|||+ ++||.||.+|++|+.
T Consensus 74 i~tDS~~vi~~i~~~~~~~~~~l~~~~~~i~~l~~~-~~~~v~~~~V~~----~~N~~AD~LA~~a~~ 136 (140)
T 3u3g_D 74 VRMDSELIVRQMQGVYKVKEPTLKEKFAKIAHIKME-RVPNLVFVHIPR----EKNARADELVNEAID 136 (140)
T ss_dssp EEESCHHHHHHHTTSSCCCCGGGHHHHHHHHHHHHH-HCTTCEEEECCG----GGGHHHHHHHHHHHH
T ss_pred EEeChHHHHHHhCCCcccCCHHHHHHHHHHHHHhhc-CCCcEEEEEcCc----hhhHHHHHHHHHHHH
Confidence 4567766665554432 223333333332222022 223799999994 899999999999975
No 89
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=91.78 E-value=0.17 Score=39.56 Aligned_cols=61 Identities=20% Similarity=0.194 Sum_probs=37.7
Q ss_pred ccccccccccccccC--CCChhhhHHHHHHHHHHHhhcCCcceEEEecCCCCCCcChhHhHHHhhhcCC
Q psy10334 99 LQMNSKSSLQTYQRL--FPNSTLCLNVKNLLSELKLKYGLSIKLVWIPGHMNISGNCAVDLAAKQAQTS 165 (314)
Q Consensus 99 l~~ds~sal~~l~~~--~~~~~~c~~~~~~l~~~~~~d~~~i~~~w~p~H~~i~~ne~Ad~~a~~a~~~ 165 (314)
+.+||+..+..+... .....+...+.+ +..+. +....|.|.|||+ ++|+.||.+|++|...
T Consensus 71 i~tDS~~vv~~i~~~~~~~~~~l~~~~~~-i~~l~-~~~~~v~~~~V~~----~~N~~AD~LA~~a~~~ 133 (141)
T 3hst_B 71 VLMDSKLVVEQMSGRWKVKHPDLLKLYVQ-AQALA-SQFRRINYEWVPR----ARNTYADRLANDAMDA 133 (141)
T ss_dssp EEESCHHHHHHHTTSSCCCSHHHHHHHHH-HHHHH-TTSSEEEEEECCG----GGCHHHHHHHHHHHHH
T ss_pred EEeChHHHHHHHhCCcccCCHHHHHHHHH-HHHHH-hcCCeEEEEEcCC----cccHHHHHHHHHHHHH
Confidence 566776666655442 122233222222 33333 2346899999995 8899999999999754
No 90
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=91.59 E-value=0.2 Score=36.19 Aligned_cols=48 Identities=23% Similarity=0.533 Sum_probs=36.6
Q ss_pred cceeccccccccC-----c-cccCCCCCcchHHHHHHHHhccCCcccccccccc
Q psy10334 32 VFRCFICIEKLRD-----T-HLCPHCSKLCCLACIRQFLTEERSQCPHCRASLH 79 (314)
Q Consensus 32 ~~~C~IC~~~~~~-----p-~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 79 (314)
.-.|.||.+-+-- + |.+..|+-..|+.|.+-=.++.+..||.|++.+.
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 3579999986432 2 2456799999999999766665678999998775
No 91
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=91.35 E-value=0.16 Score=40.44 Aligned_cols=25 Identities=24% Similarity=0.452 Sum_probs=22.0
Q ss_pred cceEEEecCCCCCCcChhHhHHHhhhcCC
Q psy10334 137 SIKLVWIPGHMNISGNCAVDLAAKQAQTS 165 (314)
Q Consensus 137 ~i~~~w~p~H~~i~~ne~Ad~~a~~a~~~ 165 (314)
.|.+.|||+ .+|+.||.+|++|+..
T Consensus 110 ~v~~~~V~~----~~N~~AD~LA~~a~~~ 134 (149)
T 2ehg_A 110 NATLIWVPR----EENKEADRLSRVAYEL 134 (149)
T ss_dssp TCEEEECCG----GGCHHHHHHHHHHHHH
T ss_pred CEEEEEcCC----cccHHHHHHHHHHHHh
Confidence 399999999 4899999999999764
No 92
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=91.08 E-value=0.00062 Score=46.78 Aligned_cols=43 Identities=5% Similarity=-0.049 Sum_probs=36.3
Q ss_pred hhhHHH-HHHHHHHHhhcCCcceEEEe-----cCCCCCCcChhHhHHHh
Q psy10334 118 TLCLNV-KNLLSELKLKYGLSIKLVWI-----PGHMNISGNCAVDLAAK 160 (314)
Q Consensus 118 ~~c~~~-~~~l~~~~~~d~~~i~~~w~-----p~H~~i~~ne~Ad~~a~ 160 (314)
..|..| .+.+..||.+|+.+||..|. .+|.++++++++..+++
T Consensus 9 ~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~~H~~~~l~~a~~~~k~ 57 (64)
T 2d8u_A 9 PMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHKACEVAPLQSVFQGQKT 57 (64)
T ss_dssp CCCSSCTTCCCCSEESSSCCCCCSHHHHSSSTTSSCEECTTTCCSSCCC
T ss_pred CcCcCcCCCccceEcCcCCceeCccccCCCcCCCCCeeCHHHHHHHHHH
Confidence 468888 88999999999999999995 37888999998876654
No 93
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.82 E-value=0.00088 Score=45.39 Aligned_cols=38 Identities=16% Similarity=0.099 Sum_probs=32.7
Q ss_pred hhhHHHHHHHHHHHhhcCCcceEEEe-----cCCCCCCcChhH
Q psy10334 118 TLCLNVKNLLSELKLKYGLSIKLVWI-----PGHMNISGNCAV 155 (314)
Q Consensus 118 ~~c~~~~~~l~~~~~~d~~~i~~~w~-----p~H~~i~~ne~A 155 (314)
..|..|.+.+.+||++|+..||+.|. .+|.+++++|++
T Consensus 15 ~~C~~H~e~L~lfC~~d~~~iC~~C~~s~eH~~H~~~~l~ea~ 57 (59)
T 2yrg_A 15 DHCARHGEKLLLFCQEDGKVICWLCERSQEHRGHHTFPTSGPS 57 (59)
T ss_dssp SBCTTTCCBCCEEETTTCSEECHHHHTSTTTTTCCEEECCSSC
T ss_pred ccChhhCceeeeecCCCCcEEecccCCCCcCCCCcEeeHHHHh
Confidence 46888999999999999999999995 378888888875
No 94
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=90.53 E-value=0.0012 Score=46.61 Aligned_cols=44 Identities=9% Similarity=0.015 Sum_probs=37.5
Q ss_pred hhhHHHHHHHHHHHhhcCCcceEEEe----cCCCCCCcChhHhHHHhh
Q psy10334 118 TLCLNVKNLLSELKLKYGLSIKLVWI----PGHMNISGNCAVDLAAKQ 161 (314)
Q Consensus 118 ~~c~~~~~~l~~~~~~d~~~i~~~w~----p~H~~i~~ne~Ad~~a~~ 161 (314)
..|..|.+.+..||.+|+..||..|. .+|.++++++++..++++
T Consensus 19 ~~C~~H~e~l~lfC~~d~~~iC~~C~~~~H~~H~~~~l~ea~~~~k~~ 66 (72)
T 2csv_A 19 RKCPVHGKTMELFCQTDQTCICYLCMFQEHKNHSTVTVEEAKAEKETE 66 (72)
T ss_dssp CBCTTTCCBCCEEESSSCCEECHHHHHTTTSSSCEEEHHHHHHHHSSC
T ss_pred CcCcccCCceEEEeCCCCeEEccccCCCCCCCCCEecHHHHHHHHHHH
Confidence 56888999999999999999999985 488889999988777654
No 95
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=88.70 E-value=0.35 Score=44.52 Aligned_cols=65 Identities=20% Similarity=0.516 Sum_probs=48.9
Q ss_pred ccceeccccccccCccccCCCCCcchHHHHHHHHh---c-cCCcccccccccccchhhhhhhhHhhhhhh
Q psy10334 31 EVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLT---E-ERSQCPHCRASLHMTDLVNCRWMEEVTQHL 96 (314)
Q Consensus 31 ~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~---~-~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~~ 96 (314)
-.+.|||=...+..|+....|.|.-|.+- ..|+. . ..-.||+|.+.+...+|.....+.++.+..
T Consensus 248 vSL~CPlS~~ri~~PvRg~~C~HlQCFDl-~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~~~ 316 (371)
T 3i2d_A 248 MSLQCPISYTRMKYPSKSINCKHLQCFDA-LWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQNC 316 (371)
T ss_dssp EESBCTTTSSBCSSEEEETTCCSSCCEEH-HHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHTTS
T ss_pred EeecCCCccccccccCcCCcCCCcceECH-HHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHHhc
Confidence 35899999999999997668999977764 22332 1 135799999999999988877766655443
No 96
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=87.59 E-value=0.27 Score=35.94 Aligned_cols=47 Identities=23% Similarity=0.547 Sum_probs=37.3
Q ss_pred ccceeccccccccCccccCCCCCcchHHHHHHHHhccCCccccccccccc
Q psy10334 31 EVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHM 80 (314)
Q Consensus 31 ~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 80 (314)
.-+.|-.|....+.=|.+ ..|-.|..|+..-+.. ...||.|..++..
T Consensus 27 G~~nCKsCWf~~k~LV~C--~dHYLCl~CLtlmL~~-SdrCpIC~~pLPt 73 (99)
T 2ko5_A 27 GPQFCKSCWFENKGLVEC--NNHYLCLNCLTLLLSV-SNRCPICKMPLPT 73 (99)
T ss_dssp CCCCCCSSCSCCSSEEEC--SSCEEEHHHHHHTCSS-SSEETTTTEECCC
T ss_pred CcccChhhccccCCeeee--cchhhHHHHHHHHHhh-ccCCcccCCcCCc
Confidence 457799998877755543 4699999999999886 4689999988754
No 97
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=86.50 E-value=0.58 Score=42.94 Aligned_cols=64 Identities=17% Similarity=0.327 Sum_probs=48.3
Q ss_pred cceeccccccccCccccCCCCCcchHHHHHHHHh---c-cCCcccccccccccchhhhhhhhHhhhhhh
Q psy10334 32 VFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLT---E-ERSQCPHCRASLHMTDLVNCRWMEEVTQHL 96 (314)
Q Consensus 32 ~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~---~-~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~~ 96 (314)
.+.|||=...+..|+....|.|.-|.+- ..|+. . ..-.||+|.+.+...+|.....+.++.+..
T Consensus 215 SL~CPlS~~ri~~P~Rg~~C~HlqCFDl-~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~~~ 282 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPCRAVTCTHLQCFDA-ALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILNDC 282 (360)
T ss_dssp ESBCTTTCSBCSSEEEETTCCCCCCEEH-HHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHTTC
T ss_pred eeeCCCccceeccCCcCCCCCCCccCCH-HHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHHhC
Confidence 5889999999999997668999977654 22332 2 134799999999999988887766665443
No 98
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=85.99 E-value=0.0027 Score=41.22 Aligned_cols=38 Identities=13% Similarity=-0.151 Sum_probs=30.3
Q ss_pred hhhHHH-HHHHHHHHhhcCCcceEEEe----cCCCCCCcChhH
Q psy10334 118 TLCLNV-KNLLSELKLKYGLSIKLVWI----PGHMNISGNCAV 155 (314)
Q Consensus 118 ~~c~~~-~~~l~~~~~~d~~~i~~~w~----p~H~~i~~ne~A 155 (314)
..|..| .+.+..||.+++.+||..|. .+|..+++++++
T Consensus 7 ~~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H~~H~~~~l~ea~ 49 (50)
T 2yvr_A 7 VYCNVHKHEPLVLFCESCDTLTCRDCQLNAHKDHQYQFLEDAV 49 (50)
T ss_dssp CBCSSSTTCBCCEEETTTTEEECHHHHHTTTTTCCEEETTC--
T ss_pred CcCcCCCCCCEEEEeCCCCEEEecccCCCcCCCCceecHHHHh
Confidence 457788 78899999999999999885 488888888876
No 99
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=85.31 E-value=0.0024 Score=46.32 Aligned_cols=44 Identities=14% Similarity=0.041 Sum_probs=36.7
Q ss_pred hhhHHH-HHHHHHHHhhcCCcceEEEe-----cCCCCCCcChhHhHHHhh
Q psy10334 118 TLCLNV-KNLLSELKLKYGLSIKLVWI-----PGHMNISGNCAVDLAAKQ 161 (314)
Q Consensus 118 ~~c~~~-~~~l~~~~~~d~~~i~~~w~-----p~H~~i~~ne~Ad~~a~~ 161 (314)
..|..| .+.+..||.+|+..||..|. .||.++++.+++..++++
T Consensus 19 ~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~~H~~~~l~ea~~~~k~~ 68 (84)
T 2dja_A 19 ITCLDHENEKVNMYCVSDDQLICALCKLVGRHRDHQVASLNDRFEKLKQT 68 (84)
T ss_dssp CCCSSCSSSCCCEEETTTTEEECHHHHHTSTTTTCCBCCCCSSCCCCCCC
T ss_pred CcCcCcCCccccEEcCCCCceEcccCcCCCCCCCCCccCHHHHHHHHHHH
Confidence 468889 58899999999999999995 488999999988776543
No 100
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=84.18 E-value=0.008 Score=37.35 Aligned_cols=25 Identities=12% Similarity=-0.003 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHHHhhcCCcceEEEe
Q psy10334 119 LCLNVKNLLSELKLKYGLSIKLVWI 143 (314)
Q Consensus 119 ~c~~~~~~l~~~~~~d~~~i~~~w~ 143 (314)
.|..|.+.+..||++|+..||+.|.
T Consensus 5 ~C~~H~e~l~lfC~~d~~~iC~~C~ 29 (42)
T 1fre_A 5 KCSEHDERLKLYCKDDGTLSCVICR 29 (42)
T ss_dssp CCCSSCSSCCCCCCSSSSSSCCTTS
T ss_pred cchhhCCeeeEEeCCCCeEEeccCC
Confidence 5777888899999999999999995
No 101
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=81.61 E-value=0.18 Score=36.04 Aligned_cols=33 Identities=21% Similarity=0.429 Sum_probs=24.9
Q ss_pred cceecc--cccccc-----CccccC-----CCCCcchHHHHHHHH
Q psy10334 32 VFRCFI--CIEKLR-----DTHLCP-----HCSKLCCLACIRQFL 64 (314)
Q Consensus 32 ~~~C~I--C~~~~~-----~p~~~~-----~CgH~FC~~Ci~~~~ 64 (314)
..-||- |...+. .+|.++ .||+.||..|-..|=
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH 69 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYH 69 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECC
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCcccc
Confidence 567888 876553 245676 799999999988773
No 102
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=81.12 E-value=0.15 Score=36.92 Aligned_cols=30 Identities=30% Similarity=0.754 Sum_probs=23.3
Q ss_pred eecccccccc-----CccccCCCCCcchHHHHHHH
Q psy10334 34 RCFICIEKLR-----DTHLCPHCSKLCCLACIRQF 63 (314)
Q Consensus 34 ~C~IC~~~~~-----~p~~~~~CgH~FC~~Ci~~~ 63 (314)
-||=|...+. .+|.++.||+.||..|-..|
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 4998877553 24678779999999998887
No 103
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=80.99 E-value=1.1 Score=29.89 Aligned_cols=41 Identities=32% Similarity=0.941 Sum_probs=29.4
Q ss_pred ceeccccccccCcc--ccCCCCCcchHHHHHHHHhccCCccccc
Q psy10334 33 FRCFICIEKLRDTH--LCPHCSKLCCLACIRQFLTEERSQCPHC 74 (314)
Q Consensus 33 ~~C~IC~~~~~~p~--~~~~CgH~FC~~Ci~~~~~~~~~~CP~C 74 (314)
..|--|...|.+.. .++.|++.||.+|= .+.-+.-..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD-~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCD-VFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHH-HTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchh-HHHHhhccCCcCC
Confidence 46999999997643 47899999999992 2222212469988
No 104
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=76.89 E-value=0.0084 Score=38.49 Aligned_cols=35 Identities=6% Similarity=-0.019 Sum_probs=26.9
Q ss_pred hhhHHHH-HHHHHHHhhcCCcceEEEe-----cCCCCCCcC
Q psy10334 118 TLCLNVK-NLLSELKLKYGLSIKLVWI-----PGHMNISGN 152 (314)
Q Consensus 118 ~~c~~~~-~~l~~~~~~d~~~i~~~w~-----p~H~~i~~n 152 (314)
..|..|. +.+++||++|+.+||..|. .+|.+++++
T Consensus 7 ~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~~H~~~~l~ 47 (48)
T 3ddt_A 7 PMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHKACEVAPLQ 47 (48)
T ss_dssp CBCSSSTTSBCCEEETTTTEEECHHHHHHSTTTTSCEEECC
T ss_pred CcCCCCCCccccEEcCCCCeeEcccccCCCcCCCCcEEeCC
Confidence 4677888 8899999999999999884 366655543
No 105
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=75.36 E-value=1.4 Score=30.01 Aligned_cols=48 Identities=25% Similarity=0.486 Sum_probs=34.9
Q ss_pred cccceeccccccccCccccCCCCCcchHHHHHHHHhcc---CCccccccccc
Q psy10334 30 AEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEE---RSQCPHCRASL 78 (314)
Q Consensus 30 ~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~---~~~CP~Cr~~~ 78 (314)
.....|.||.+. .+-+.+..|...|...|+...+... .-.||.|....
T Consensus 10 ~~~~~C~vC~~~-~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 10 APGARCGVCGDG-TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp CTTCCCTTTSCC-TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCCcCCCCCC-CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 345679999874 3444567799999999998777652 24699997644
No 106
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=70.47 E-value=1.9 Score=33.40 Aligned_cols=31 Identities=29% Similarity=0.789 Sum_probs=23.4
Q ss_pred cceeccccccccCc---cccCCCCCcchHHHHHH
Q psy10334 32 VFRCFICIEKLRDT---HLCPHCSKLCCLACIRQ 62 (314)
Q Consensus 32 ~~~C~IC~~~~~~p---~~~~~CgH~FC~~Ci~~ 62 (314)
...|.+|...|.-- .-+..||+.||..|...
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 46799999887633 24567999999999543
No 107
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.98 E-value=0.024 Score=37.83 Aligned_cols=34 Identities=15% Similarity=0.091 Sum_probs=27.3
Q ss_pred hhhhHHHHHHHHHHHhhcCCcceEEEe-----cCCCCCC
Q psy10334 117 STLCLNVKNLLSELKLKYGLSIKLVWI-----PGHMNIS 150 (314)
Q Consensus 117 ~~~c~~~~~~l~~~~~~d~~~i~~~w~-----p~H~~i~ 150 (314)
...|..|.+.+++||++|+..||+.|. .+|.+++
T Consensus 18 ~~~C~~H~e~L~lfC~~d~~~iC~~C~~~~eH~~H~~~~ 56 (57)
T 2egm_A 18 QGICPKHQEALKLFCEVDEEAICVVCRESRSHKQHSVVP 56 (57)
T ss_dssp TSBCTTTCCBCCEEETTTTEEECHHHHHSHHHHSSCEEC
T ss_pred cCcChhhCceeeEEcCCCCcEEecccCCCCCCCCCcEec
Confidence 346889999999999999999999985 2666544
No 108
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=69.93 E-value=0.46 Score=38.33 Aligned_cols=67 Identities=19% Similarity=0.397 Sum_probs=43.0
Q ss_pred ccceecccccccc----CccccCCCCCcchHHHHHHHHhcc-CCcccccccccccchhhhhhhhHhhhhhhcc
Q psy10334 31 EVFRCFICIEKLR----DTHLCPHCSKLCCLACIRQFLTEE-RSQCPHCRASLHMTDLVNCRWMEEVTQHLDN 98 (314)
Q Consensus 31 ~~~~C~IC~~~~~----~p~~~~~CgH~FC~~Ci~~~~~~~-~~~CP~Cr~~~~~~~~~~~~~~~~~~~~~~~ 98 (314)
.+-.|.+|...|. -.+.+..|+|.+|..|=. |.... .-.|-+|++.-....-.-.+++..+.+.++.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~~~~~W~C~vC~k~rel~~kSGeWf~~~~~~rfk~ 138 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHPEEQGWLCDPCHLARVVKIGSLEWYYQHVRARFKR 138 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCSSSSSCEEHHHHHHHHHHHHHCHHHHHHHHTTSSS
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhccccc-ccCCCCcEeeHHHHHHHHHHHhccHHHHHHHHhhhcc
Confidence 5689999998763 234678999999999952 32221 2359999864332222234666667776763
No 109
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=68.98 E-value=0.9 Score=26.76 Aligned_cols=17 Identities=29% Similarity=0.544 Sum_probs=10.8
Q ss_pred ccceeccccccccCccc
Q psy10334 31 EVFRCFICIEKLRDTHL 47 (314)
Q Consensus 31 ~~~~C~IC~~~~~~p~~ 47 (314)
+-|.||||+..|..+..
T Consensus 4 EGFiCP~C~~~l~s~~~ 20 (34)
T 3mjh_B 4 EGFICPQCMKSLGSADE 20 (34)
T ss_dssp EEEECTTTCCEESSHHH
T ss_pred cccCCcHHHHHcCCHHH
Confidence 34677777776666554
No 110
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=67.16 E-value=2.3 Score=30.15 Aligned_cols=32 Identities=25% Similarity=0.718 Sum_probs=23.9
Q ss_pred ccceeccccccccCc---cccCCCCCcchHHHHHH
Q psy10334 31 EVFRCFICIEKLRDT---HLCPHCSKLCCLACIRQ 62 (314)
Q Consensus 31 ~~~~C~IC~~~~~~p---~~~~~CgH~FC~~Ci~~ 62 (314)
+...|.+|...|.-- .-+..||..||..|...
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 456799999888632 23567999999999654
No 111
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=65.57 E-value=2.8 Score=30.34 Aligned_cols=33 Identities=30% Similarity=0.653 Sum_probs=24.2
Q ss_pred ccceeccccccccC---ccccCCCCCcchHHHHHHH
Q psy10334 31 EVFRCFICIEKLRD---THLCPHCSKLCCLACIRQF 63 (314)
Q Consensus 31 ~~~~C~IC~~~~~~---p~~~~~CgH~FC~~Ci~~~ 63 (314)
+...|.+|...|.- -.-+..||+.||..|....
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 45679999987753 2245679999999996543
No 112
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=65.18 E-value=2.7 Score=29.96 Aligned_cols=32 Identities=28% Similarity=0.597 Sum_probs=24.0
Q ss_pred ccceeccccccccCc---cccCCCCCcchHHHHHH
Q psy10334 31 EVFRCFICIEKLRDT---HLCPHCSKLCCLACIRQ 62 (314)
Q Consensus 31 ~~~~C~IC~~~~~~p---~~~~~CgH~FC~~Ci~~ 62 (314)
+...|.+|...|.-- .-+..||+.||..|...
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 456899999887632 24567999999999554
No 113
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=64.83 E-value=2 Score=33.71 Aligned_cols=47 Identities=28% Similarity=0.593 Sum_probs=29.9
Q ss_pred cccceecccccccc----CccccCCCCCcchHHHHHHHHhcc---CCccccccc
Q psy10334 30 AEVFRCFICIEKLR----DTHLCPHCSKLCCLACIRQFLTEE---RSQCPHCRA 76 (314)
Q Consensus 30 ~~~~~C~IC~~~~~----~p~~~~~CgH~FC~~Ci~~~~~~~---~~~CP~Cr~ 76 (314)
..+-.|.+|...|. -.+.+..|.|.+|..|=..--... .-.|-+|++
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k 106 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLE 106 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHH
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHH
Confidence 35678999998873 233677899999998843221110 124777765
No 114
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=64.69 E-value=1.5 Score=32.77 Aligned_cols=33 Identities=21% Similarity=0.482 Sum_probs=20.2
Q ss_pred ccccCccccCCCCCcchHHHHHHHHhccCCccccccccc
Q psy10334 40 EKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASL 78 (314)
Q Consensus 40 ~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 78 (314)
.++..|..|.+||+.|+ .-+. ....||.|+..-
T Consensus 62 ~L~v~p~~C~~CG~~F~-----~~~~-kPsrCP~CkSe~ 94 (105)
T 2gmg_A 62 VLLIKPAQCRKCGFVFK-----AEIN-IPSRCPKCKSEW 94 (105)
T ss_dssp EEEECCCBBTTTCCBCC-----CCSS-CCSSCSSSCCCC
T ss_pred EEEEECcChhhCcCeec-----ccCC-CCCCCcCCCCCc
Confidence 34455666778999991 1111 135799998653
No 115
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=63.84 E-value=3.5 Score=28.52 Aligned_cols=29 Identities=28% Similarity=0.638 Sum_probs=22.0
Q ss_pred ceeccccccccCc---cccCCCCCcchHHHHH
Q psy10334 33 FRCFICIEKLRDT---HLCPHCSKLCCLACIR 61 (314)
Q Consensus 33 ~~C~IC~~~~~~p---~~~~~CgH~FC~~Ci~ 61 (314)
-.|.+|...|.-- .-+..||..||..|-.
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 4799999877632 2356799999999953
No 116
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=62.94 E-value=0.75 Score=30.83 Aligned_cols=35 Identities=17% Similarity=0.561 Sum_probs=25.1
Q ss_pred cceeccccccccC-----ccccCC--CCCcchHHHHHHHHhc
Q psy10334 32 VFRCFICIEKLRD-----THLCPH--CSKLCCLACIRQFLTE 66 (314)
Q Consensus 32 ~~~C~IC~~~~~~-----p~~~~~--CgH~FC~~Ci~~~~~~ 66 (314)
.-.||-|.-.+.- -+++.. ||+.||+.|...|-..
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 4578988876653 335544 8999999998888654
No 117
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=62.46 E-value=3 Score=32.01 Aligned_cols=45 Identities=24% Similarity=0.530 Sum_probs=28.9
Q ss_pred ccceeccccccccCc---cccCCCCCcchHHHHHHHHhccCCccccccc
Q psy10334 31 EVFRCFICIEKLRDT---HLCPHCSKLCCLACIRQFLTEERSQCPHCRA 76 (314)
Q Consensus 31 ~~~~C~IC~~~~~~p---~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~ 76 (314)
+...|..|...|.-- .-+..||..||..|....... ...|-.|-.
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~-vRVC~~C~~ 65 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNG-PRLCLLCQR 65 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC-----CCEEHHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCC-ceECHHHHH
Confidence 346799999888643 235679999999996554332 245877854
No 118
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=62.25 E-value=2.8 Score=30.25 Aligned_cols=33 Identities=24% Similarity=0.574 Sum_probs=24.3
Q ss_pred cccceeccccccccCc---cccCCCCCcchHHHHHH
Q psy10334 30 AEVFRCFICIEKLRDT---HLCPHCSKLCCLACIRQ 62 (314)
Q Consensus 30 ~~~~~C~IC~~~~~~p---~~~~~CgH~FC~~Ci~~ 62 (314)
.+...|.+|...|.-- .-+..||..||..|...
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 4456799999877633 23567999999999543
No 119
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=61.27 E-value=0.51 Score=34.66 Aligned_cols=40 Identities=23% Similarity=0.567 Sum_probs=27.2
Q ss_pred ceeccccccccCccccCCCCCcchHHHHHHHHhccCCcccccccccc
Q psy10334 33 FRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASLH 79 (314)
Q Consensus 33 ~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 79 (314)
..||+|...+. +. . |+.+|..|-..+... ..||.|..++.
T Consensus 33 ~~CP~Cq~eL~-~~--g--~~~hC~~C~~~f~~~--a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLD-QD--N--GHARCRSCGEFIEMK--ALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEE-EE--T--TEEEETTTCCEEEEE--EECTTTCSBCE
T ss_pred ccCccCCCcce-ec--C--CEEECccccchhhcc--ccCcchhhHHH
Confidence 88999997665 21 1 455688885544322 57999998765
No 120
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=60.52 E-value=3.1 Score=30.59 Aligned_cols=13 Identities=23% Similarity=0.657 Sum_probs=12.0
Q ss_pred cchHHHHHHHHhc
Q psy10334 54 LCCLACIRQFLTE 66 (314)
Q Consensus 54 ~FC~~Ci~~~~~~ 66 (314)
.||+.|+.+|+..
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6999999999986
No 121
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.17 E-value=3.2 Score=29.59 Aligned_cols=31 Identities=19% Similarity=0.524 Sum_probs=22.7
Q ss_pred ccceeccccccccCc---cccCCCCCcchHHHHH
Q psy10334 31 EVFRCFICIEKLRDT---HLCPHCSKLCCLACIR 61 (314)
Q Consensus 31 ~~~~C~IC~~~~~~p---~~~~~CgH~FC~~Ci~ 61 (314)
+...|.+|...|.-- .-+..||..||..|..
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 346799999887532 2356799999999943
No 122
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=60.00 E-value=3.2 Score=30.46 Aligned_cols=13 Identities=31% Similarity=0.769 Sum_probs=11.9
Q ss_pred cchHHHHHHHHhc
Q psy10334 54 LCCLACIRQFLTE 66 (314)
Q Consensus 54 ~FC~~Ci~~~~~~ 66 (314)
.||+.|+.+|+..
T Consensus 41 GFCRNCLskWy~~ 53 (104)
T 3fyb_A 41 DFCRNCLAKWLME 53 (104)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6999999999985
No 123
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=55.25 E-value=4.9 Score=26.72 Aligned_cols=46 Identities=22% Similarity=0.650 Sum_probs=33.2
Q ss_pred cccceeccccccccCccccCCCCCcchHHHHHHHHhc---cCCccccccc
Q psy10334 30 AEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTE---ERSQCPHCRA 76 (314)
Q Consensus 30 ~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~---~~~~CP~Cr~ 76 (314)
.++..|.||.+. .+-+.+..|...|...|+..-+.. ..-.||.|..
T Consensus 9 ~~~~~C~vC~~~-g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQG-GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSCC-SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCccCCCC-CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 356789999873 344456778899999999875543 1346999964
No 124
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=53.42 E-value=4.3 Score=34.39 Aligned_cols=32 Identities=25% Similarity=0.629 Sum_probs=23.6
Q ss_pred ccceeccccccccCc---cccCCCCCcchHHHHHH
Q psy10334 31 EVFRCFICIEKLRDT---HLCPHCSKLCCLACIRQ 62 (314)
Q Consensus 31 ~~~~C~IC~~~~~~p---~~~~~CgH~FC~~Ci~~ 62 (314)
+...|.+|...|.-- .-+..||+.||..|-..
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 357899999887632 24567999999999543
No 125
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=51.83 E-value=5.8 Score=28.39 Aligned_cols=28 Identities=25% Similarity=0.623 Sum_probs=22.1
Q ss_pred ccceeccccccccC--ccccCCCCCcchHHH
Q psy10334 31 EVFRCFICIEKLRD--THLCPHCSKLCCLAC 59 (314)
Q Consensus 31 ~~~~C~IC~~~~~~--p~~~~~CgH~FC~~C 59 (314)
..-.|..|..-+.- |..+ .||..||..-
T Consensus 24 ~~~rC~~C~kkvgl~~~f~C-rCg~~FC~~H 53 (85)
T 1wff_A 24 IMKHCFLCGKKTGLATSFEC-RCGNNFCASH 53 (85)
T ss_dssp CCCBCSSSCCBCSSSSCEEC-TTCCEECTTT
T ss_pred cCccchhhCCeecccCCeEc-CCCCEecccC
Confidence 34789999975554 8899 5999999764
No 126
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=50.88 E-value=3.9 Score=28.27 Aligned_cols=50 Identities=16% Similarity=0.449 Sum_probs=34.2
Q ss_pred cccceeccccccccC--ccccCCCCCcchHHHHHHHHhc---cCCcccccccccc
Q psy10334 30 AEVFRCFICIEKLRD--THLCPHCSKLCCLACIRQFLTE---ERSQCPHCRASLH 79 (314)
Q Consensus 30 ~~~~~C~IC~~~~~~--p~~~~~CgH~FC~~Ci~~~~~~---~~~~CP~Cr~~~~ 79 (314)
.+...|+||.....+ -+.+..|.--|...|+.--... ....||.|+..+.
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 455779999887543 2345678889999998754432 1356999976543
No 127
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=50.36 E-value=6.2 Score=32.10 Aligned_cols=8 Identities=50% Similarity=1.194 Sum_probs=5.4
Q ss_pred cccccccc
Q psy10334 70 QCPHCRAS 77 (314)
Q Consensus 70 ~CP~Cr~~ 77 (314)
.||+|..+
T Consensus 155 ~CP~Cg~~ 162 (170)
T 3pwf_A 155 YCPVCGAP 162 (170)
T ss_dssp BCTTTCCB
T ss_pred CCCCCCCC
Confidence 68888653
No 128
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=49.88 E-value=18 Score=28.53 Aligned_cols=45 Identities=24% Similarity=0.493 Sum_probs=30.8
Q ss_pred ccceeccccccccCccccCCCCCcchHHHHHHHHh----------ccCCccccccc
Q psy10334 31 EVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLT----------EERSQCPHCRA 76 (314)
Q Consensus 31 ~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~----------~~~~~CP~Cr~ 76 (314)
.+..|.||.+-= +=+.+..|-..||..||..-+. .+.-.||.|+.
T Consensus 62 ~~d~C~vC~~GG-~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 62 MDEQCRWCAEGG-NLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp CBCSCSSSCCCS-SEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCeecccCCCC-cEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 356799998632 2223456899999999997653 12347999964
No 129
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=49.87 E-value=5.7 Score=33.87 Aligned_cols=32 Identities=22% Similarity=0.641 Sum_probs=23.6
Q ss_pred ccceeccccccccCc---cccCCCCCcchHHHHHH
Q psy10334 31 EVFRCFICIEKLRDT---HLCPHCSKLCCLACIRQ 62 (314)
Q Consensus 31 ~~~~C~IC~~~~~~p---~~~~~CgH~FC~~Ci~~ 62 (314)
+.-.|.+|...|.-- .-+..||+.||..|-..
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 346899999877632 23567999999999553
No 130
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=49.56 E-value=4.4 Score=27.87 Aligned_cols=42 Identities=14% Similarity=0.206 Sum_probs=28.0
Q ss_pred hccccceeccccccccCccccCCCCCcchHHHHHHHHhccCCcccccccccccchhhhhh
Q psy10334 28 ALAEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHMTDLVNCR 87 (314)
Q Consensus 28 ~~~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~ 87 (314)
.+-+.+.||+|...+..-.. .+...||.|+..+...+-+++.
T Consensus 4 ~LLeiL~CP~ck~~L~~~~~------------------~~~LiC~~cg~~YPI~dGIPvm 45 (69)
T 2pk7_A 4 KLLDILACPICKGPLKLSAD------------------KTELISKGAGLAYPIRDGIPVM 45 (69)
T ss_dssp CGGGTCCCTTTCCCCEECTT------------------SSEEEETTTTEEEEEETTEECC
T ss_pred HHHhheeCCCCCCcCeEeCC------------------CCEEEcCCCCcEecCcCCeeee
Confidence 35567889999976553211 1235699999888877766653
No 131
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=49.24 E-value=2.8 Score=28.08 Aligned_cols=47 Identities=19% Similarity=0.425 Sum_probs=31.5
Q ss_pred cccceeccccccccC---ccccCCCCCcchHHHHHHHHhc----cCCccccccc
Q psy10334 30 AEVFRCFICIEKLRD---THLCPHCSKLCCLACIRQFLTE----ERSQCPHCRA 76 (314)
Q Consensus 30 ~~~~~C~IC~~~~~~---p~~~~~CgH~FC~~Ci~~~~~~----~~~~CP~Cr~ 76 (314)
++...|+||...+.+ -|.+..|..=|...|+.---.. ....||.|+.
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 566889999988742 3345567778888887643221 2356999975
No 132
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.33 E-value=11 Score=25.38 Aligned_cols=28 Identities=21% Similarity=0.530 Sum_probs=21.7
Q ss_pred cceecc--ccccccCccccCCCCCcchHHH
Q psy10334 32 VFRCFI--CIEKLRDTHLCPHCSKLCCLAC 59 (314)
Q Consensus 32 ~~~C~I--C~~~~~~p~~~~~CgH~FC~~C 59 (314)
...|+. |...---|+.+..|+..||..=
T Consensus 12 ~~~Cs~~~Ck~~~ll~f~C~~C~~~FC~~H 41 (63)
T 1x4v_A 12 TNKCERAGCRQREMMKLTCERCSRNFCIKH 41 (63)
T ss_dssp CCCCCSTTCCCCCSSCCBCSSSCCBCCHHH
T ss_pred CCCCCccCCCCCCccceECCCCCcccCccc
Confidence 467999 9976445888877999999753
No 133
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=46.52 E-value=8.4 Score=29.12 Aligned_cols=51 Identities=12% Similarity=0.191 Sum_probs=37.5
Q ss_pred ccceeccccccccC---ccccCCCCCcchHHHHHHHHhccCCcccccccccccchh
Q psy10334 31 EVFRCFICIEKLRD---THLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHMTDL 83 (314)
Q Consensus 31 ~~~~C~IC~~~~~~---p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 83 (314)
+-|.|..|...|.+ .... .=|..||..|-.+-+.. ...|..|..++....+
T Consensus 31 ~CF~C~~C~~~L~~~~~~~~~-~~g~~yC~~cy~~~f~~-~~~C~~C~~~I~~~~~ 84 (122)
T 1m3v_A 31 RCLKCSSCQAQLGDIGTSSYT-KSGMILCRNDYIRLFGN-SGAGGSGGHMGSGGDV 84 (122)
T ss_dssp HHHCCSSSCCCTTTSEECCEE-ETTEEECHHHHHHHHCC-CCSSSCSSCCSCCEES
T ss_pred hCCCcCCCCCcccccCCeEEE-ECCeeecHHHHHHHcCC-CCccccCCCCcCchhe
Confidence 34899999999964 2332 35899999998887653 2379999988876544
No 134
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=42.92 E-value=2.4 Score=28.10 Aligned_cols=45 Identities=24% Similarity=0.606 Sum_probs=31.7
Q ss_pred ccceeccccccccCccccCCCCCcchHHHHHHHHhc---cCCccccccc
Q psy10334 31 EVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTE---ERSQCPHCRA 76 (314)
Q Consensus 31 ~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~---~~~~CP~Cr~ 76 (314)
.+..|.||.+. .+-+.+..|...|...|+..-+.. +.-.||.|..
T Consensus 4 ~~~~C~vC~~~-g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~ 51 (60)
T 2puy_A 4 HEDFCSVCRKS-GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 51 (60)
T ss_dssp CCSSCTTTCCC-SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHH
T ss_pred CCCCCcCCCCC-CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccC
Confidence 35679999874 344556778999999998865443 1246999964
No 135
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=42.57 E-value=5.2 Score=28.80 Aligned_cols=54 Identities=22% Similarity=0.392 Sum_probs=35.8
Q ss_pred ccccceeccccccc----cCccccCCCCCcchHHHHHHHHh-ccCCcccccccccccch
Q psy10334 29 LAEVFRCFICIEKL----RDTHLCPHCSKLCCLACIRQFLT-EERSQCPHCRASLHMTD 82 (314)
Q Consensus 29 ~~~~~~C~IC~~~~----~~p~~~~~CgH~FC~~Ci~~~~~-~~~~~CP~Cr~~~~~~~ 82 (314)
.+++..|.||.+.- .+=+.+..|.-.|...|+..-.. .+.-.||.|........
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~~~ 80 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRARPA 80 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTSCC
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccchhh
Confidence 46778999999753 12334567888999999874322 12356999976544433
No 136
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=42.16 E-value=4.7 Score=26.79 Aligned_cols=47 Identities=21% Similarity=0.547 Sum_probs=32.3
Q ss_pred cccceeccccccccCccccCCCCCcchHHHHHHHHhcc---CCcccccccc
Q psy10334 30 AEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEE---RSQCPHCRAS 77 (314)
Q Consensus 30 ~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~---~~~CP~Cr~~ 77 (314)
.++..|.||.+. .+-+.+..|...|...|+..-+... .-.||.|...
T Consensus 7 ~~~~~C~vC~~~-g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 7 HHMEFCRVCKDG-GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SSCSSCTTTCCC-SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCCcCCCCCCC-CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 345779999863 3444556788999999988655431 2469999753
No 137
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=40.48 E-value=8.7 Score=26.17 Aligned_cols=42 Identities=19% Similarity=0.113 Sum_probs=28.2
Q ss_pred HhccccceeccccccccCccccCCCCCcchHHHHHHHHhccCCcccccccccccchhhhh
Q psy10334 27 RALAEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHMTDLVNC 86 (314)
Q Consensus 27 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 86 (314)
..+-+.+.||+|...+..-.. ++...||.|+..+...+-+++
T Consensus 5 ~~LLeiL~CP~ck~~L~~~~~------------------~g~LvC~~c~~~YPI~dGIPv 46 (67)
T 2jny_A 5 PQLLEVLACPKDKGPLRYLES------------------EQLLVNERLNLAYRIDDGIPV 46 (67)
T ss_dssp GGGTCCCBCTTTCCBCEEETT------------------TTEEEETTTTEEEEEETTEEC
T ss_pred HHHHHHhCCCCCCCcCeEeCC------------------CCEEEcCCCCccccCCCCEee
Confidence 346678899999986553221 123569999988877666665
No 138
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=40.41 E-value=11 Score=27.05 Aligned_cols=30 Identities=27% Similarity=0.678 Sum_probs=23.5
Q ss_pred cccceecc--ccccccCccccCCCCCcchHHH
Q psy10334 30 AEVFRCFI--CIEKLRDTHLCPHCSKLCCLAC 59 (314)
Q Consensus 30 ~~~~~C~I--C~~~~~~p~~~~~CgH~FC~~C 59 (314)
.....|+. |...---|+.+..||..||..=
T Consensus 23 ~~~~~C~~~~Ck~~~~l~f~C~~C~~~FC~~H 54 (86)
T 1wfe_A 23 HKSYSCSFKGCTDVELVAVICPYCEKNFCLRH 54 (86)
T ss_dssp SCCEECCSTTCCCEESSCEECTTTCCEECGGG
T ss_pred CCCCCCCCcCCCCCCccceECCCCCccccccc
Confidence 34578999 9976557888977999999753
No 139
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=40.33 E-value=11 Score=28.52 Aligned_cols=46 Identities=22% Similarity=0.430 Sum_probs=35.2
Q ss_pred ccceeccccccccC-ccccCCCCCcchHHHHHHHHhccCCccccccccccc
Q psy10334 31 EVFRCFICIEKLRD-THLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHM 80 (314)
Q Consensus 31 ~~~~C~IC~~~~~~-p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 80 (314)
+-|.|..|...|.+ +... .=|..||..|-.+-+ .+.|+.|..++..
T Consensus 29 ~CF~C~~C~~~L~~~~f~~-~~g~~yC~~cy~~~~---~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 29 KHFCCFDCDSILAGEIYVM-VNDKPVCKPCYVKNH---AVVCQGCHNAIDP 75 (126)
T ss_dssp GGSBCTTTCCBCTTSEEEE-ETTEEEEHHHHHHHS---CCBCTTTCSBCCT
T ss_pred CCCCcCCCCCCCCcCEEEe-ECCEEechHHhCcCc---CccCcccCCcCCc
Confidence 45899999998876 3333 358999999987654 3579999998875
No 140
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.92 E-value=2.9 Score=27.22 Aligned_cols=46 Identities=24% Similarity=0.583 Sum_probs=31.8
Q ss_pred cccceeccccccccCccccCCCCCcchHHHHHHHHhcc---CCccccccc
Q psy10334 30 AEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEE---RSQCPHCRA 76 (314)
Q Consensus 30 ~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~---~~~CP~Cr~ 76 (314)
.++..|.||.+. .+-+.+..|...|...|+..-+... .-.||.|..
T Consensus 7 ~~~~~C~vC~~~-g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS-GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS-SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC-CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 456779999974 3444566788999999988655431 235998854
No 141
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=39.45 E-value=8.4 Score=26.33 Aligned_cols=41 Identities=7% Similarity=0.135 Sum_probs=27.5
Q ss_pred hccccceeccccccccCccccCCCCCcchHHHHHHHHhccCCcccccccccccchhhhh
Q psy10334 28 ALAEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHMTDLVNC 86 (314)
Q Consensus 28 ~~~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 86 (314)
.+-+.+.||+|...+..-+. . +...||.|+..+...+-+++
T Consensus 4 ~LL~iL~CP~ck~~L~~~~~---~---------------~~LiC~~cg~~YPI~dGIPv 44 (68)
T 2jr6_A 4 KFLDILVCPVTKGRLEYHQD---K---------------QELWSRQAKLAYPIKDGIPY 44 (68)
T ss_dssp SSSCCCBCSSSCCBCEEETT---T---------------TEEEETTTTEEEEEETTEEC
T ss_pred HHhhheECCCCCCcCeEeCC---C---------------CEEEcCCCCcEecCCCCeee
Confidence 35567899999986553221 1 23569999888877776665
No 142
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=38.51 E-value=5.8 Score=32.51 Aligned_cols=47 Identities=26% Similarity=0.518 Sum_probs=32.4
Q ss_pred ccceeccccccccCccccCCCCCcchHHHHHHHHhc---cCCccccccccc
Q psy10334 31 EVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTE---ERSQCPHCRASL 78 (314)
Q Consensus 31 ~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~---~~~~CP~Cr~~~ 78 (314)
++..|.||.+. .+-+.+..|...|+..|+..-+.. +.-.||.|+..-
T Consensus 3 ~~~~C~~C~~~-g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG-GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC-SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC-CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 34569999864 344456678899999998665543 124699998643
No 143
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=38.50 E-value=4.1 Score=27.33 Aligned_cols=48 Identities=21% Similarity=0.522 Sum_probs=33.1
Q ss_pred cccceeccccccc----cCccccCCCCCcchHHHHHHHHh------ccCCcccccccc
Q psy10334 30 AEVFRCFICIEKL----RDTHLCPHCSKLCCLACIRQFLT------EERSQCPHCRAS 77 (314)
Q Consensus 30 ~~~~~C~IC~~~~----~~p~~~~~CgH~FC~~Ci~~~~~------~~~~~CP~Cr~~ 77 (314)
.++..|.||.... .+-+.+..|...|...|+..-+. ...-.||.|...
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 4567899999764 23345677999999999875432 123569999653
No 144
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=38.40 E-value=10 Score=24.77 Aligned_cols=16 Identities=31% Similarity=0.654 Sum_probs=11.9
Q ss_pred hccccceecccccccc
Q psy10334 28 ALAEVFRCFICIEKLR 43 (314)
Q Consensus 28 ~~~~~~~C~IC~~~~~ 43 (314)
.+-+-+.||+|...+.
T Consensus 6 ~lL~iL~CP~c~~~L~ 21 (56)
T 2kpi_A 6 GLLEILACPACHAPLE 21 (56)
T ss_dssp SCTTSCCCSSSCSCEE
T ss_pred HHHhheeCCCCCCcce
Confidence 4566789999998554
No 145
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=38.31 E-value=16 Score=33.67 Aligned_cols=44 Identities=20% Similarity=0.591 Sum_probs=31.4
Q ss_pred cceeccccccccCccccC--CCCCcchHHHHHHHHhcc---------CCccccccc
Q psy10334 32 VFRCFICIEKLRDTHLCP--HCSKLCCLACIRQFLTEE---------RSQCPHCRA 76 (314)
Q Consensus 32 ~~~C~IC~~~~~~p~~~~--~CgH~FC~~Ci~~~~~~~---------~~~CP~Cr~ 76 (314)
+..|.+|.+-- +=+.+. .|...||..||.+.+... .-.|=+|.-
T Consensus 93 ~~yCr~C~~Gg-~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 93 QSYCSICCSGE-TLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp BCSCTTTCCCS-SCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred cccceEcCCCC-eEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 56788988643 333444 799999999999998531 236999963
No 146
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=38.21 E-value=5.7 Score=27.20 Aligned_cols=42 Identities=17% Similarity=0.289 Sum_probs=28.0
Q ss_pred hccccceeccccccccCccccCCCCCcchHHHHHHHHhccCCcccccccccccchhhhhh
Q psy10334 28 ALAEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHMTDLVNCR 87 (314)
Q Consensus 28 ~~~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~ 87 (314)
.+-+.+.||+|...+..-+. .+...||.|+..+...+-+++.
T Consensus 4 ~LL~iL~CP~ck~~L~~~~~------------------~~~LiC~~cg~~YPI~dGIPvm 45 (68)
T 2hf1_A 4 KFLEILVCPLCKGPLVFDKS------------------KDELICKGDRLAFPIKDGIPMM 45 (68)
T ss_dssp CCEEECBCTTTCCBCEEETT------------------TTEEEETTTTEEEEEETTEECC
T ss_pred HHhhheECCCCCCcCeEeCC------------------CCEEEcCCCCcEecCCCCeeee
Confidence 34567889999975553221 1235699999888877766653
No 147
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=38.11 E-value=9.6 Score=25.82 Aligned_cols=33 Identities=30% Similarity=0.672 Sum_probs=23.8
Q ss_pred cccceeccccccccCccccCCC-CCcchHHHHHHHH
Q psy10334 30 AEVFRCFICIEKLRDTHLCPHC-SKLCCLACIRQFL 64 (314)
Q Consensus 30 ~~~~~C~IC~~~~~~p~~~~~C-gH~FC~~Ci~~~~ 64 (314)
++..-|-||.+-.. +.+..| |-.||..|..+.-
T Consensus 6 ee~pWC~ICneDAt--lrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 6 SGLPWCCICNEDAT--LRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CCCSSCTTTCSCCC--EEETTTTSEEECSSHHHHHT
T ss_pred cCCCeeEEeCCCCe--EEecCCCCceehHHHHHHHc
Confidence 45677999998533 345568 8999999977653
No 148
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=37.64 E-value=23 Score=25.27 Aligned_cols=37 Identities=16% Similarity=0.444 Sum_probs=26.5
Q ss_pred HhccccceeccccccccCcc-ccCCCCCcchHHHHHHH
Q psy10334 27 RALAEVFRCFICIEKLRDTH-LCPHCSKLCCLACIRQF 63 (314)
Q Consensus 27 ~~~~~~~~C~IC~~~~~~p~-~~~~CgH~FC~~Ci~~~ 63 (314)
+.+..+-.|.||..+-.+-. -+.-|+-.|.-.|+++-
T Consensus 10 e~~~~D~~C~VC~~~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 10 EPVVNDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCCCSCCCTTTCCCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred cCCCCCcccCccccccccceeccccccccccHhhcccc
Confidence 34556788999985544322 23458999999999985
No 149
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=36.68 E-value=7.1 Score=32.22 Aligned_cols=46 Identities=20% Similarity=0.457 Sum_probs=31.4
Q ss_pred eeccccccccCcc------ccCCCCCcchHHHHHHH------Hhc----cCCcccccccccc
Q psy10334 34 RCFICIEKLRDTH------LCPHCSKLCCLACIRQF------LTE----ERSQCPHCRASLH 79 (314)
Q Consensus 34 ~C~IC~~~~~~p~------~~~~CgH~FC~~Ci~~~------~~~----~~~~CP~Cr~~~~ 79 (314)
.||||...+.+.- .+..|..=|...|+.-- +.. ....||.|+....
T Consensus 4 ~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 4 FCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp BCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred cCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 5999999887642 45668888888887531 110 1367999986543
No 150
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=36.17 E-value=16 Score=29.26 Aligned_cols=43 Identities=21% Similarity=0.634 Sum_probs=30.1
Q ss_pred cceeccccccccCccccC--CCCCcchHHHHHHHHhcc---------CCcccccc
Q psy10334 32 VFRCFICIEKLRDTHLCP--HCSKLCCLACIRQFLTEE---------RSQCPHCR 75 (314)
Q Consensus 32 ~~~C~IC~~~~~~p~~~~--~CgH~FC~~Ci~~~~~~~---------~~~CP~Cr 75 (314)
+..|.||.+-= +=+.+. .|...||..||...+... .-.|=+|.
T Consensus 79 ~~yC~wC~~Gg-~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~ 132 (159)
T 3a1b_A 79 QSYCTICCGGR-EVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCG 132 (159)
T ss_dssp BSSCTTTSCCS-EEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTC
T ss_pred cceeeEecCCC-eEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecC
Confidence 46799998742 223343 588999999999988752 13588885
No 151
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=36.13 E-value=7.6 Score=36.09 Aligned_cols=34 Identities=32% Similarity=0.698 Sum_probs=0.0
Q ss_pred ccceeccccccccCc---cccCCCCCcchHHHHHHHH
Q psy10334 31 EVFRCFICIEKLRDT---HLCPHCSKLCCLACIRQFL 64 (314)
Q Consensus 31 ~~~~C~IC~~~~~~p---~~~~~CgH~FC~~Ci~~~~ 64 (314)
+...|.+|...|.-- .-+..||+.||..|-....
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~ 410 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKY 410 (434)
T ss_dssp -------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCee
Confidence 356799999877532 2456799999999987553
No 152
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=35.06 E-value=11 Score=25.34 Aligned_cols=28 Identities=29% Similarity=0.622 Sum_probs=21.5
Q ss_pred ccceeccccccccC-ccccCCCCCcchHHH
Q psy10334 31 EVFRCFICIEKLRD-THLCPHCSKLCCLAC 59 (314)
Q Consensus 31 ~~~~C~IC~~~~~~-p~~~~~CgH~FC~~C 59 (314)
....|..|..-+.- +..+ .||..||..-
T Consensus 14 ~~~rC~~C~kkvgl~~f~C-rCg~~FC~~H 42 (64)
T 1wg2_A 14 PNNRCFSCNKKVGVMGFKC-KCGSTFCGSH 42 (64)
T ss_dssp CSCSCTTTCCCCTTSCEEC-TTSCEECSSS
T ss_pred cCCcChhhCCcccccCeEe-ecCCEecccC
Confidence 45789999986544 6788 6999999753
No 153
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=34.81 E-value=13 Score=37.52 Aligned_cols=49 Identities=27% Similarity=0.666 Sum_probs=36.0
Q ss_pred cccceeccccccccCcc---------ccCCCCCcc--------------------hHHHHHHHHhcc-------CCcccc
Q psy10334 30 AEVFRCFICIEKLRDTH---------LCPHCSKLC--------------------CLACIRQFLTEE-------RSQCPH 73 (314)
Q Consensus 30 ~~~~~C~IC~~~~~~p~---------~~~~CgH~F--------------------C~~Ci~~~~~~~-------~~~CP~ 73 (314)
.+...|+-|+..+.||. .|+.||=.| |..|-.++-.-. ...||.
T Consensus 109 pD~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~aC~~ 188 (761)
T 3vth_A 109 PDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVACFD 188 (761)
T ss_dssp CCBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCCCTT
T ss_pred CCccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCcCCc
Confidence 46688999999888886 467888554 999999986531 235999
Q ss_pred ccccc
Q psy10334 74 CRASL 78 (314)
Q Consensus 74 Cr~~~ 78 (314)
|.=.+
T Consensus 189 CGP~l 193 (761)
T 3vth_A 189 CGPSL 193 (761)
T ss_dssp TSCCE
T ss_pred cCCee
Confidence 96433
No 154
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=34.54 E-value=5.1 Score=27.04 Aligned_cols=46 Identities=24% Similarity=0.557 Sum_probs=32.4
Q ss_pred cccceeccccccccCccccCCCCCcchHHHHHHHHhc---cCCccccccc
Q psy10334 30 AEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTE---ERSQCPHCRA 76 (314)
Q Consensus 30 ~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~---~~~~CP~Cr~ 76 (314)
.++..|.||.+. .+-+.+..|...|...|+..-+.. ..-.||.|..
T Consensus 6 ~~~~~C~vC~~~-g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 6 KNEDECAVCRDG-GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp SCCCSBSSSSCC-SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCCccCCCC-CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 456789999974 344556778889999998754443 1246999964
No 155
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.40 E-value=11 Score=25.62 Aligned_cols=28 Identities=32% Similarity=0.721 Sum_probs=22.3
Q ss_pred ccceeccccccccCc----cccCCCCCcchHHH
Q psy10334 31 EVFRCFICIEKLRDT----HLCPHCSKLCCLAC 59 (314)
Q Consensus 31 ~~~~C~IC~~~~~~p----~~~~~CgH~FC~~C 59 (314)
....|..|...+.-+ ..+ .||..||..-
T Consensus 14 ~~~rC~~C~kk~gL~~~egf~C-rCg~~FC~~H 45 (67)
T 1x4w_A 14 SRRRCFQCQTKLELVQQELGSC-RCGYVFCMLH 45 (67)
T ss_dssp CTTBCSSSCCBCCHHHHHHHCC-SSSCCCCTTT
T ss_pred cCCcchhhCCeecccccCceEe-cCCCEehhcc
Confidence 346899999888776 578 6999999753
No 156
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=34.21 E-value=8.4 Score=27.81 Aligned_cols=47 Identities=21% Similarity=0.538 Sum_probs=33.0
Q ss_pred ccceeccccccccCccccCCCCCcchHHHHHHHHhccCCccccccccccc
Q psy10334 31 EVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHM 80 (314)
Q Consensus 31 ~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 80 (314)
+-|.|..|...|.+......=|..||..|-.+-+ .+.|..|..++..
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~---~~~C~~C~~~I~~ 78 (101)
T 2cup_A 32 TCFRCAKCLHPLANETFVAKDNKILCNKCTTRED---SPKCKGCFKAIVA 78 (101)
T ss_dssp TTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCC---CCBCSSSCCBCCS
T ss_pred cCCcccccCCCCCcCeeECcCCEEEChhHhhhhc---CCccccCCCcccc
Confidence 4588999999887542112348999999964332 3579999888764
No 157
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=33.95 E-value=17 Score=22.79 Aligned_cols=43 Identities=40% Similarity=0.801 Sum_probs=29.0
Q ss_pred eecccccccc--CccccCCCCCcchHHHHHHHHhcc---CCccccccc
Q psy10334 34 RCFICIEKLR--DTHLCPHCSKLCCLACIRQFLTEE---RSQCPHCRA 76 (314)
Q Consensus 34 ~C~IC~~~~~--~p~~~~~CgH~FC~~Ci~~~~~~~---~~~CP~Cr~ 76 (314)
.|.||...-. +-+.+..|...|...|+..-+... .-.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 4889986432 233456789999999997544431 246999964
No 158
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=33.58 E-value=8.9 Score=28.56 Aligned_cols=46 Identities=24% Similarity=0.574 Sum_probs=31.4
Q ss_pred cccceecccccccc--CccccCCCCCcchHHHHHHHHhc---cCCcccccc
Q psy10334 30 AEVFRCFICIEKLR--DTHLCPHCSKLCCLACIRQFLTE---ERSQCPHCR 75 (314)
Q Consensus 30 ~~~~~C~IC~~~~~--~p~~~~~CgH~FC~~Ci~~~~~~---~~~~CP~Cr 75 (314)
.++..|.||.+.=. +=+.+..|+..|...|+...... ..-.||.|+
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 35678999986532 22556789999999999876542 123577764
No 159
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=32.91 E-value=23 Score=22.10 Aligned_cols=12 Identities=17% Similarity=0.504 Sum_probs=9.0
Q ss_pred cceecccccccc
Q psy10334 32 VFRCFICIEKLR 43 (314)
Q Consensus 32 ~~~C~IC~~~~~ 43 (314)
...|.+|..++.
T Consensus 4 ~y~C~vCGyvyd 15 (46)
T 6rxn_A 4 KYVCNVCGYEYD 15 (46)
T ss_dssp CEEETTTCCEEC
T ss_pred EEECCCCCeEEe
Confidence 467999987764
No 160
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=32.82 E-value=35 Score=25.31 Aligned_cols=45 Identities=20% Similarity=0.529 Sum_probs=28.0
Q ss_pred ccceeccccccc--------cCccccCCCCCcchHHHHHH------HHhccCCcccccc
Q psy10334 31 EVFRCFICIEKL--------RDTHLCPHCSKLCCLACIRQ------FLTEERSQCPHCR 75 (314)
Q Consensus 31 ~~~~C~IC~~~~--------~~p~~~~~CgH~FC~~Ci~~------~~~~~~~~CP~Cr 75 (314)
....|.+|+..= .+=+.+..|+..|...|+.- ......-.||.|+
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 345699997641 12234577999999999952 2222234577775
No 161
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=32.67 E-value=16 Score=24.58 Aligned_cols=28 Identities=21% Similarity=0.630 Sum_probs=21.5
Q ss_pred ccceeccccccccC-ccccCCCCCcchHHH
Q psy10334 31 EVFRCFICIEKLRD-THLCPHCSKLCCLAC 59 (314)
Q Consensus 31 ~~~~C~IC~~~~~~-p~~~~~CgH~FC~~C 59 (314)
....|..|..-+.- +..+ .||..||..-
T Consensus 14 ~~~rC~~C~kkvgl~~f~C-rCg~~FC~~H 42 (64)
T 1wfh_A 14 RPNRCTVCRKRVGLTGFMC-RCGTTFCGSH 42 (64)
T ss_dssp SCCCCTTTCCCCCTTCEEC-SSSCEECTTT
T ss_pred cCCcChhhCCccCccCEEe-ecCCEecccc
Confidence 45789999986543 6788 6999999754
No 162
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=32.61 E-value=18 Score=36.56 Aligned_cols=48 Identities=25% Similarity=0.653 Sum_probs=37.1
Q ss_pred cccceeccccccccCcc---------ccCCCCCcc--------------------hHHHHHHHHhcc-------CCcccc
Q psy10334 30 AEVFRCFICIEKLRDTH---------LCPHCSKLC--------------------CLACIRQFLTEE-------RSQCPH 73 (314)
Q Consensus 30 ~~~~~C~IC~~~~~~p~---------~~~~CgH~F--------------------C~~Ci~~~~~~~-------~~~CP~ 73 (314)
.+...|+-|+..+.||. .|+.||=.| |..|-.++-.-. ...||.
T Consensus 104 pD~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC~~ 183 (772)
T 4g9i_A 104 PDIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTACPV 183 (772)
T ss_dssp CCCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCCTT
T ss_pred CchhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCCcc
Confidence 56789999999888886 567888765 999999987531 136999
Q ss_pred cccc
Q psy10334 74 CRAS 77 (314)
Q Consensus 74 Cr~~ 77 (314)
|-=.
T Consensus 184 CGP~ 187 (772)
T 4g9i_A 184 CGPS 187 (772)
T ss_dssp TSCC
T ss_pred CCce
Confidence 9743
No 163
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=31.66 E-value=7.2 Score=32.62 Aligned_cols=47 Identities=26% Similarity=0.456 Sum_probs=32.6
Q ss_pred ccceeccccccccCccccCCCCCcchHHHHHHHHhcc---CCccccccccc
Q psy10334 31 EVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEE---RSQCPHCRASL 78 (314)
Q Consensus 31 ~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~---~~~CP~Cr~~~ 78 (314)
.+..|.+|.+. .+-+.+..|...|+..|+..-+... .-.||.|+..-
T Consensus 6 ~~~~C~~C~~~-g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 6 NEDWCAVCQNG-GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SCSSBTTTCCC-EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCC-CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 34569999864 2344567799999999987655531 24699998643
No 164
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=31.64 E-value=12 Score=25.60 Aligned_cols=42 Identities=19% Similarity=0.330 Sum_probs=28.4
Q ss_pred hccccceeccccccccCccccCCCCCcchHHHHHHHHhccCCcccccccccccchhhhhh
Q psy10334 28 ALAEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHMTDLVNCR 87 (314)
Q Consensus 28 ~~~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~ 87 (314)
.+-+.+.||+|...+..-+. .+...||.|+..+...+-+++.
T Consensus 4 ~LL~iL~CP~ck~~L~~~~~------------------~~~LiC~~cg~~YPI~dGIPvm 45 (70)
T 2js4_A 4 RLLDILVCPVCKGRLEFQRA------------------QAELVCNADRLAFPVRDGVPIM 45 (70)
T ss_dssp CCCCCCBCTTTCCBEEEETT------------------TTEEEETTTTEEEEEETTEECC
T ss_pred HHhhheECCCCCCcCEEeCC------------------CCEEEcCCCCceecCCCCeeee
Confidence 35567899999986553221 1235699999888877766663
No 165
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=31.18 E-value=33 Score=27.27 Aligned_cols=47 Identities=15% Similarity=0.394 Sum_probs=35.2
Q ss_pred ccceeccccccccCccccCCCCCcchHHHHHHHHhccCCcccccccccccc
Q psy10334 31 EVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHMT 81 (314)
Q Consensus 31 ~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 81 (314)
+-|.|..|...|.+.... .=|..||..|-.+-+. ..|..|..++...
T Consensus 32 ~CF~C~~C~~~L~~~~f~-~~g~~yC~~~y~~~f~---~~C~~C~~~I~~~ 78 (169)
T 2rgt_A 32 KCLKCSDCHVPLAERCFS-RGESVYCKDDFFKRFG---TKCAACQLGIPPT 78 (169)
T ss_dssp TTSBCTTTCCBCCSCCEE-SSSCEECHHHHHHHHS---CBCTTTCCBCCTT
T ss_pred ccCccCCCCCcCCCCCcc-cCCeeeeccccccccc---ccccccccccCCC
Confidence 458999999988764333 3489999999876553 5799998877643
No 166
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=30.92 E-value=32 Score=26.51 Aligned_cols=45 Identities=24% Similarity=0.479 Sum_probs=29.7
Q ss_pred ccceeccccccccCccccCCCCCcchHHHHHHHHh----------ccCCccccccc
Q psy10334 31 EVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLT----------EERSQCPHCRA 76 (314)
Q Consensus 31 ~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~----------~~~~~CP~Cr~ 76 (314)
.+..|.||.+-=. -+-+..|-..||..||..-+. .+.-.|+.|+-
T Consensus 56 ~~~~C~vC~dGG~-LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 56 MDEQCRWCAEGGN-LICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp CBSSCTTTCCCSE-EEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCcCeecCCCCe-eEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 3456999986422 223456889999999997521 12347999953
No 167
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=30.12 E-value=23 Score=22.60 Aligned_cols=12 Identities=17% Similarity=0.647 Sum_probs=9.1
Q ss_pred Cccccccccccc
Q psy10334 69 SQCPHCRASLHM 80 (314)
Q Consensus 69 ~~CP~Cr~~~~~ 80 (314)
..|+.|...|..
T Consensus 40 ~~C~~C~k~f~~ 51 (62)
T 1vd4_A 40 FRCTFCHTEVEE 51 (62)
T ss_dssp EBCSSSCCBCEE
T ss_pred EECCCCCCcccc
Confidence 469999887754
No 168
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=29.16 E-value=21 Score=29.38 Aligned_cols=12 Identities=25% Similarity=0.368 Sum_probs=7.2
Q ss_pred cceecccccccc
Q psy10334 32 VFRCFICIEKLR 43 (314)
Q Consensus 32 ~~~C~IC~~~~~ 43 (314)
...|++|..++.
T Consensus 155 ~~~C~~CG~~~~ 166 (191)
T 1lko_A 155 KWRCRNCGYVHE 166 (191)
T ss_dssp EEEETTTCCEEE
T ss_pred eEEECCCCCEee
Confidence 355777766654
No 169
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=28.60 E-value=21 Score=35.37 Aligned_cols=49 Identities=24% Similarity=0.689 Sum_probs=36.5
Q ss_pred cccceeccccccccCcc---------ccCCCCCcc--------------------hHHHHHHHHhcc-------CCcccc
Q psy10334 30 AEVFRCFICIEKLRDTH---------LCPHCSKLC--------------------CLACIRQFLTEE-------RSQCPH 73 (314)
Q Consensus 30 ~~~~~C~IC~~~~~~p~---------~~~~CgH~F--------------------C~~Ci~~~~~~~-------~~~CP~ 73 (314)
.+...|+-|+..+.||. .|+.||=.| |..|-.++-.-. ...||.
T Consensus 15 pD~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHAqp~aCp~ 94 (657)
T 3ttc_A 15 PDAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQPVACPE 94 (657)
T ss_dssp CCBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTCTTCCCTT
T ss_pred CchhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcCCCCcCcc
Confidence 56788999998888876 467788665 999999987631 236999
Q ss_pred ccccc
Q psy10334 74 CRASL 78 (314)
Q Consensus 74 Cr~~~ 78 (314)
|-=.+
T Consensus 95 CGP~l 99 (657)
T 3ttc_A 95 CGPYL 99 (657)
T ss_dssp TSCCE
T ss_pred cCccc
Confidence 96434
No 170
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=27.74 E-value=24 Score=24.48 Aligned_cols=28 Identities=25% Similarity=0.599 Sum_probs=21.3
Q ss_pred ccceeccccccccC-ccccCCCCCcchHHH
Q psy10334 31 EVFRCFICIEKLRD-THLCPHCSKLCCLAC 59 (314)
Q Consensus 31 ~~~~C~IC~~~~~~-p~~~~~CgH~FC~~C 59 (314)
....|..|..-+.- +..+ .||..||..-
T Consensus 24 ~~~RC~~C~kkvgL~~f~C-rCg~~FCs~H 52 (74)
T 1wfp_A 24 TATRCLSCNKKVGVTGFKC-RCGSTFCGTH 52 (74)
T ss_dssp CCCBCSSSCCBCTTTCEEC-TTSCEECTTT
T ss_pred cCccchhhcCcccccceEe-ccCCEecccc
Confidence 45789999865543 6788 6999999754
No 171
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=27.66 E-value=27 Score=24.22 Aligned_cols=48 Identities=19% Similarity=0.433 Sum_probs=31.5
Q ss_pred ccceecccccccc---CccccCCCCCcchHHHHHHHHhc----cCCcccccccccc
Q psy10334 31 EVFRCFICIEKLR---DTHLCPHCSKLCCLACIRQFLTE----ERSQCPHCRASLH 79 (314)
Q Consensus 31 ~~~~C~IC~~~~~---~p~~~~~CgH~FC~~Ci~~~~~~----~~~~CP~Cr~~~~ 79 (314)
+...| ||..... .-|.+..|..=|...|+.---.. ....||.|+....
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 65 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFG 65 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSC
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccC
Confidence 45667 9998763 23356668888999998632221 2357999986543
No 172
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=27.37 E-value=15 Score=26.39 Aligned_cols=47 Identities=21% Similarity=0.478 Sum_probs=33.2
Q ss_pred cccceeccccccccCccccCCCCCcchHHHHHHHHhcc---CCcccccccc
Q psy10334 30 AEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEE---RSQCPHCRAS 77 (314)
Q Consensus 30 ~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~---~~~CP~Cr~~ 77 (314)
.++..|.||.+. .+=+.+..|.-.|...|+..-+... .-.||.|...
T Consensus 23 ~n~~~C~vC~~~-g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKP-GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSS-SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCC-CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 456789999974 2444566788899999987665541 3469999753
No 173
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=27.22 E-value=42 Score=20.21 Aligned_cols=22 Identities=27% Similarity=0.579 Sum_probs=18.2
Q ss_pred CCCCCCCCCCCCccccccceecccCcCc
Q psy10334 246 QEPPMCNDCQVQITIKQFKHILCDCPLY 273 (314)
Q Consensus 246 ~~~~~C~~Cg~~~~~et~~H~l~~Cp~~ 273 (314)
.+...|-.||.. .|+--+||.-
T Consensus 8 ~~~~~C~~Cgk~------GH~ardCP~~ 29 (40)
T 1a6b_B 8 LDRDQCAYCKEK------GHWAKDCPKK 29 (40)
T ss_dssp CCSSSCSSSCCT------TCCTTSCSSS
T ss_pred CCCCeeeECCCC------CcchhhCcCC
Confidence 346789999995 8999999974
No 174
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=27.09 E-value=87 Score=21.74 Aligned_cols=16 Identities=19% Similarity=0.511 Sum_probs=11.0
Q ss_pred cccceeccccccccCc
Q psy10334 30 AEVFRCFICIEKLRDT 45 (314)
Q Consensus 30 ~~~~~C~IC~~~~~~p 45 (314)
+..+.|++|...|...
T Consensus 15 ~~~~~C~~C~~~f~~~ 30 (106)
T 2ee8_A 15 KKEFICKFCGRHFTKS 30 (106)
T ss_dssp CCCCBCSSSCCBCSSH
T ss_pred CcCeECCCCCCccCCH
Confidence 3457788888777543
No 175
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=26.63 E-value=17 Score=29.71 Aligned_cols=48 Identities=17% Similarity=0.454 Sum_probs=35.5
Q ss_pred ccceeccccccccC---ccccCCCCCcchHHHHHHHHhccCCccccccccccc
Q psy10334 31 EVFRCFICIEKLRD---THLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHM 80 (314)
Q Consensus 31 ~~~~C~IC~~~~~~---p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 80 (314)
+-|.|..|...|.+ +... .=|..||..|-.+-+.. ...|+.|..++..
T Consensus 31 ~CF~C~~C~~~L~~~g~~~~~-~~g~~yC~~cy~~~~~~-~~~C~~C~~~I~~ 81 (188)
T 1rut_X 31 RCLKCSSCQAQLGDIGTSSYT-KSGMILCRNDYIRLFGN-SGACSACGQSIPA 81 (188)
T ss_dssp GGCBCTTTCCBHHHHCSEEEE-ETTEEECHHHHHHHHSC-CEECTTTCCEECT
T ss_pred cCcccCCCCcccccCCceEEE-eCCcccccccccccccc-CCccccCCCcccc
Confidence 45899999998875 4433 34899999998776543 1269999987764
No 176
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=25.73 E-value=28 Score=24.22 Aligned_cols=28 Identities=25% Similarity=0.567 Sum_probs=21.7
Q ss_pred ccceecc--ccccccCccccCCCCCcchHH
Q psy10334 31 EVFRCFI--CIEKLRDTHLCPHCSKLCCLA 58 (314)
Q Consensus 31 ~~~~C~I--C~~~~~~p~~~~~CgH~FC~~ 58 (314)
-...|+. |...---|..+..||..||..
T Consensus 13 ~g~~Cs~~~C~~~dflpf~C~~C~~~FC~~ 42 (75)
T 1wys_A 13 IGQHCQVQHCRQRDFLPFVCDGCSGIFCLE 42 (75)
T ss_dssp CCCCCSCTTTCCCSCCCEECTTTCCEECST
T ss_pred cCCCcCcccCCCccceeeECcccCcCcCcc
Confidence 3468988 987645588887799999974
No 177
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=25.60 E-value=36 Score=26.31 Aligned_cols=26 Identities=23% Similarity=0.438 Sum_probs=19.3
Q ss_pred CCCCCCCCCCCccccccceecccCcCcH
Q psy10334 247 EPPMCNDCQVQITIKQFKHILCDCPLYQ 274 (314)
Q Consensus 247 ~~~~C~~Cg~~~~~et~~H~l~~Cp~~~ 274 (314)
.-|.||.|+.+.+.|+-.. +-||--.
T Consensus 26 ~lP~CP~C~seytYeDg~l--~vCPeC~ 51 (138)
T 2akl_A 26 TLPPCPQCNSEYTYEDGAL--LVCPECA 51 (138)
T ss_dssp CSCCCTTTCCCCCEECSSS--EEETTTT
T ss_pred cCCCCCCCCCcceEecCCe--EECCccc
Confidence 4699999999888776665 4588543
No 178
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=25.36 E-value=27 Score=29.04 Aligned_cols=8 Identities=38% Similarity=1.103 Sum_probs=5.7
Q ss_pred cccccccc
Q psy10334 70 QCPHCRAS 77 (314)
Q Consensus 70 ~CP~Cr~~ 77 (314)
.||+|..+
T Consensus 188 ~CP~C~~~ 195 (202)
T 1yuz_A 188 KCPICFRP 195 (202)
T ss_dssp BCTTTCCB
T ss_pred CCCCCCCC
Confidence 68888654
No 179
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=25.23 E-value=19 Score=24.63 Aligned_cols=46 Identities=28% Similarity=0.616 Sum_probs=29.5
Q ss_pred cccceeccccccccCcc-ccCC--CC-CcchHHHHHHHHhc---cCCccccccccc
Q psy10334 30 AEVFRCFICIEKLRDTH-LCPH--CS-KLCCLACIRQFLTE---ERSQCPHCRASL 78 (314)
Q Consensus 30 ~~~~~C~IC~~~~~~p~-~~~~--Cg-H~FC~~Ci~~~~~~---~~~~CP~Cr~~~ 78 (314)
.+...| ||.......+ .+.. |. .-|...|+. +.. ....||.|+..-
T Consensus 14 ~~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 14 NEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp TSCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCCEE-ECCCCCCCCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 456788 8998644433 3333 55 579999987 333 135699997543
No 180
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=25.13 E-value=14 Score=26.98 Aligned_cols=46 Identities=26% Similarity=0.550 Sum_probs=30.2
Q ss_pred cccceeccccccccCc--cccCCCCCcchHHHHHHHHhc--cCCccccccc
Q psy10334 30 AEVFRCFICIEKLRDT--HLCPHCSKLCCLACIRQFLTE--ERSQCPHCRA 76 (314)
Q Consensus 30 ~~~~~C~IC~~~~~~p--~~~~~CgH~FC~~Ci~~~~~~--~~~~CP~Cr~ 76 (314)
.+...| ||.....+- +.+..|.--|...|+..-... ....||.|+.
T Consensus 26 ~d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 26 TDVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 345788 998766543 345678888888887643322 1357999973
No 181
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=25.06 E-value=18 Score=29.04 Aligned_cols=46 Identities=20% Similarity=0.543 Sum_probs=31.1
Q ss_pred cccceeccccccccC---ccccCCCCCcchHHHHHHHHh----ccCCccccccc
Q psy10334 30 AEVFRCFICIEKLRD---THLCPHCSKLCCLACIRQFLT----EERSQCPHCRA 76 (314)
Q Consensus 30 ~~~~~C~IC~~~~~~---p~~~~~CgH~FC~~Ci~~~~~----~~~~~CP~Cr~ 76 (314)
++...| ||.....+ -+.+..|..-|+..|+.---. .....||.|+.
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 456789 99987532 345667889999999863221 12357999975
No 182
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=24.92 E-value=29 Score=26.16 Aligned_cols=48 Identities=13% Similarity=0.382 Sum_probs=35.4
Q ss_pred ccceeccccccccC---ccccCCCCCcchHHHHHHHHhccCCccccccccccc
Q psy10334 31 EVFRCFICIEKLRD---THLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHM 80 (314)
Q Consensus 31 ~~~~C~IC~~~~~~---p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 80 (314)
+-|.|..|...|.+ +... .=|..||..|-.+-+.. ...|..|..++..
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~~-~~g~~yC~~~y~~~~~~-~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLYY-KLGRKLCRRDYLRLFGQ-DGLCASCDKRIRA 78 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEEE-ETTEEECHHHHHHHHCC-CEECTTTCCEECT
T ss_pred HHcccCcCCCccccCCCeEEE-ECCEEeecCchhhhCCC-ccChhhcCCccCc
Confidence 55899999998853 3333 24899999998876643 2379999988764
No 183
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=24.50 E-value=32 Score=20.94 Aligned_cols=41 Identities=20% Similarity=0.322 Sum_probs=22.9
Q ss_pred cceeccccccccCccccCCCCCcchHHHHHHHHhccCCccccccccccc
Q psy10334 32 VFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHM 80 (314)
Q Consensus 32 ~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 80 (314)
.+.|++|...|.....+. .|. ...-......|+.|...+..
T Consensus 4 ~~~C~~C~~~f~~~~~l~--~H~------~~h~~~~~~~C~~C~~~f~~ 44 (57)
T 3uk3_C 4 SRECSYCGKFFRSNYYLN--IHL------RTHTGEKPYKCEFCEYAAAQ 44 (57)
T ss_dssp -CBCTTTCCBCSCHHHHH--HHH------HHHHCCCCEECSSSSCEESS
T ss_pred CccCCCCcchhCChHHHH--HHH------HHcCCCCCcCCCCCcchhCC
Confidence 356888877777665442 221 11222223579999877754
No 184
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=24.45 E-value=23 Score=25.55 Aligned_cols=46 Identities=28% Similarity=0.616 Sum_probs=29.3
Q ss_pred cccceeccccccccCcc-ccCC--CC-CcchHHHHHHHHhc---cCCccccccccc
Q psy10334 30 AEVFRCFICIEKLRDTH-LCPH--CS-KLCCLACIRQFLTE---ERSQCPHCRASL 78 (314)
Q Consensus 30 ~~~~~C~IC~~~~~~p~-~~~~--Cg-H~FC~~Ci~~~~~~---~~~~CP~Cr~~~ 78 (314)
.+...| ||.......+ .+.. |. .-|...|+. +.. ....||.|+..-
T Consensus 34 ~e~~yC-iC~~~~~g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 34 NEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCCBCS-TTCCBCCSCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCCcEE-ECCCCCCCCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 456788 9998654433 3333 44 469999987 332 135799997543
No 185
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=24.40 E-value=28 Score=24.09 Aligned_cols=26 Identities=35% Similarity=0.800 Sum_probs=19.7
Q ss_pred cceecccccccc-CccccCCCCCcchHH
Q psy10334 32 VFRCFICIEKLR-DTHLCPHCSKLCCLA 58 (314)
Q Consensus 32 ~~~C~IC~~~~~-~p~~~~~CgH~FC~~ 58 (314)
...|..|..-+. -+..+. ||..||..
T Consensus 25 ~nRC~~CrKkvgL~gf~Cr-Cg~~FCs~ 51 (74)
T 1wfl_A 25 KNRCFMCRKKVGLTGFDCR-CGNLFCGL 51 (74)
T ss_dssp TTBCSSSCCBCGGGCEECT-TSCEECSS
T ss_pred CCcChhhCCcccccCeecC-CCCEechh
Confidence 468999987543 367885 99999974
No 186
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.19 E-value=29 Score=22.88 Aligned_cols=34 Identities=26% Similarity=0.561 Sum_probs=19.9
Q ss_pred cceeccccccccCccccCCCCCcchHHHHHHHHh
Q psy10334 32 VFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLT 65 (314)
Q Consensus 32 ~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~ 65 (314)
-|.|..|...|.+-.....=|..||..|-.+-+.
T Consensus 31 CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 64 (70)
T 2d8x_A 31 CFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKA 64 (70)
T ss_dssp TSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHC
T ss_pred CCEeCCCCCcCCCCccEeECCeEECHHHhhhhcC
Confidence 4677777776665321112467777777665544
No 187
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=24.14 E-value=15 Score=20.46 Aligned_cols=14 Identities=29% Similarity=0.505 Sum_probs=8.1
Q ss_pred ceeccccccccCcc
Q psy10334 33 FRCFICIEKLRDTH 46 (314)
Q Consensus 33 ~~C~IC~~~~~~p~ 46 (314)
+.||||...+-|+.
T Consensus 4 ~~CpvCk~q~Pd~k 17 (28)
T 2jvx_A 4 FCCPKCQYQAPDMD 17 (28)
T ss_dssp EECTTSSCEESSHH
T ss_pred ccCccccccCcChH
Confidence 45666666555544
No 188
>3d00_A Tungsten formylmethanofuran dehydrogenase subunit; FWDE/GAPDH domain-like fold, structural genomics, joint CENT structural genomics; HET: MSE; 1.90A {Syntrophus aciditrophicus}
Probab=24.04 E-value=24 Score=29.15 Aligned_cols=25 Identities=24% Similarity=0.526 Sum_probs=19.6
Q ss_pred ccceeccccccccCccccCCCCCcchHHHHH
Q psy10334 31 EVFRCFICIEKLRDTHLCPHCSKLCCLACIR 61 (314)
Q Consensus 31 ~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~ 61 (314)
....|++|.|.+-++ |...|..|-.
T Consensus 162 ~~~~C~~CGE~~~~~------g~~~C~~C~~ 186 (191)
T 3d00_A 162 KIVLCPQCREAYPAQ------DGELCLSCQG 186 (191)
T ss_dssp CEEECTTTCCEEEGG------GCSSCHHHHT
T ss_pred CCEECCcCCCChhhC------CCcCCccccC
Confidence 456799999977665 8899999953
No 189
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.49 E-value=44 Score=22.03 Aligned_cols=33 Identities=24% Similarity=0.488 Sum_probs=21.9
Q ss_pred cceeccccccccCc-cccCCCCCcchHHHHHHHHh
Q psy10334 32 VFRCFICIEKLRDT-HLCPHCSKLCCLACIRQFLT 65 (314)
Q Consensus 32 ~~~C~IC~~~~~~p-~~~~~CgH~FC~~Ci~~~~~ 65 (314)
-|.|..|...|.+. ... .=|..||..|-.+-+.
T Consensus 33 CF~C~~C~~~L~~~~~~~-~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 33 CFVCSTCRAQLRGQHFYA-VERRAYCEGCYVATLE 66 (72)
T ss_dssp TCBCSSSCCBCTTSCEEE-SSSCEEEHHHHHHHHH
T ss_pred CCcccccCCcCCcCcCEe-eCCeEECHHHHHHHHc
Confidence 47788888777543 222 3478888888776654
No 190
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=23.42 E-value=18 Score=27.04 Aligned_cols=42 Identities=21% Similarity=0.574 Sum_probs=26.7
Q ss_pred eeccccccc---------cCccccCCCCCcchHHHHHHHHh------ccCCcccccc
Q psy10334 34 RCFICIEKL---------RDTHLCPHCSKLCCLACIRQFLT------EERSQCPHCR 75 (314)
Q Consensus 34 ~C~IC~~~~---------~~p~~~~~CgH~FC~~Ci~~~~~------~~~~~CP~Cr 75 (314)
.|.||++.- .+-+.+..|+..|...|+..... ...-.||.|+
T Consensus 3 ~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 3 YCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred cCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 588998654 12345567999999999874321 2234577774
No 191
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.18 E-value=46 Score=21.75 Aligned_cols=35 Identities=23% Similarity=0.692 Sum_probs=23.5
Q ss_pred ccceeccccccccCccccCCCCCcchHHHHHHHHh
Q psy10334 31 EVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLT 65 (314)
Q Consensus 31 ~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~ 65 (314)
+-|.|..|...|.+......=|..||..|-.+.+.
T Consensus 30 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~ 64 (69)
T 2cur_A 30 DCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVS 64 (69)
T ss_dssp TTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHT
T ss_pred CcCEECCCCCCCCCCccEeECCEEECHHHhHHHhc
Confidence 34888889888865322113478899988876654
No 192
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=23.16 E-value=11 Score=25.54 Aligned_cols=47 Identities=21% Similarity=0.598 Sum_probs=28.9
Q ss_pred ccccceeccccccccCc--cccCCCCCcchHHHHHHHHhc--cCCccccccc
Q psy10334 29 LAEVFRCFICIEKLRDT--HLCPHCSKLCCLACIRQFLTE--ERSQCPHCRA 76 (314)
Q Consensus 29 ~~~~~~C~IC~~~~~~p--~~~~~CgH~FC~~Ci~~~~~~--~~~~CP~Cr~ 76 (314)
-.+...| ||.....+- |.+..|..=|...|+.---.. ....||.|+.
T Consensus 16 ~~~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 16 FQGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTTCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCCceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 3567889 999876653 234556767777776532211 1356998864
No 193
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.74 E-value=34 Score=22.71 Aligned_cols=31 Identities=19% Similarity=0.447 Sum_probs=18.4
Q ss_pred cceeccccccccCccccCCCCCcchHHHHHH
Q psy10334 32 VFRCFICIEKLRDTHLCPHCSKLCCLACIRQ 62 (314)
Q Consensus 32 ~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~ 62 (314)
-|.|..|...|.+..-...=|..||..|-.+
T Consensus 35 CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~ 65 (72)
T 1x4l_A 35 CFNCKKCSLSLVGRGFLTERDDILCPDCGKD 65 (72)
T ss_dssp TCBCSSSCCBCTTSCCEECSSSEECHHHHHT
T ss_pred cCEeccCCCcCCCCccEeECCEEEChhHcCc
Confidence 4777777777664321113467777777543
No 194
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=22.71 E-value=33 Score=27.66 Aligned_cols=47 Identities=15% Similarity=0.395 Sum_probs=31.9
Q ss_pred ccceeccccccccCccccCCCCCcchHHHHHHHHhccCCcccccccccccc
Q psy10334 31 EVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHMT 81 (314)
Q Consensus 31 ~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 81 (314)
+-|.|..|...|.+.... .=|..||..|-.+-+ .+.|..|..++...
T Consensus 86 ~CF~C~~C~~~L~~~~f~-~~g~~yC~~~y~~~f---~~kC~~C~~~I~~~ 132 (182)
T 2jtn_A 86 KCLKCSDCHVPLAERCFS-RGESVYCKDDFFKRF---GTKCAACQLGIPPT 132 (182)
T ss_dssp STTSCTTTCCCCSSCCEE-ETTEEECHHHHHHTT---SCCCTTTCCCCCSS
T ss_pred ccCccCCCCCccCCCcee-ECCEeeecCcccccc---ccccccCCCccCCC
Confidence 347888888777653322 237889988876543 35799998877643
No 195
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.53 E-value=33 Score=22.01 Aligned_cols=35 Identities=14% Similarity=0.284 Sum_probs=25.7
Q ss_pred ccceeccccccccCccccCCCCCcchHHHHHHHHhccCCccccccccccc
Q psy10334 31 EVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHM 80 (314)
Q Consensus 31 ~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 80 (314)
..+.|++|...|.....+.. .....|+.|...+..
T Consensus 17 ~~~~C~~C~k~f~~~~~l~~---------------~~~~~C~~C~~~f~~ 51 (73)
T 2ctu_A 17 RSQKCSKCGIIFIRRSTLSR---------------RKTPMCEKCRKDSCQ 51 (73)
T ss_dssp SEEECSSSCCEEECCCCCCC---------------SSSCCCHHHHHTCSC
T ss_pred CCeeCCcccchhCCHHHhCc---------------CCCCCCCCCChhhcC
Confidence 45889999999988776643 224679999877653
No 196
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.11 E-value=51 Score=22.10 Aligned_cols=40 Identities=18% Similarity=0.449 Sum_probs=27.6
Q ss_pred CccccCCCCCcchHHHHHHHHhc---cCCcccccccccccchh
Q psy10334 44 DTHLCPHCSKLCCLACIRQFLTE---ERSQCPHCRASLHMTDL 83 (314)
Q Consensus 44 ~p~~~~~CgH~FC~~Ci~~~~~~---~~~~CP~Cr~~~~~~~~ 83 (314)
-|+.++.|+..|-..-+...... ....||.|.+.+....+
T Consensus 16 r~~~C~~C~~~~~~~~L~~H~~~c~~~~~~C~~C~~~~~~~~l 58 (75)
T 2d9k_A 16 RLAVCQHCDLELSILKLKEHEDYCGARTELCGNCGRNVLVKDL 58 (75)
T ss_dssp CCEECSSSCCEECHHHHHHHHHHHHHCEEECSSSCCEEETTGG
T ss_pred cccCCcccChHhhHHHHHHHHhHcCCCceEcccCCCcCcHHHH
Confidence 47777788888887777776532 12469999876654444
No 197
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=21.92 E-value=43 Score=23.12 Aligned_cols=32 Identities=25% Similarity=0.645 Sum_probs=23.3
Q ss_pred ccceeccccccc-cCcc-ccCCCCCcchHHHHHH
Q psy10334 31 EVFRCFICIEKL-RDTH-LCPHCSKLCCLACIRQ 62 (314)
Q Consensus 31 ~~~~C~IC~~~~-~~p~-~~~~CgH~FC~~Ci~~ 62 (314)
.+..|.+|.+.- ..++ .+..|.-+||..|+..
T Consensus 29 ~~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~ 62 (78)
T 2ffw_A 29 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 62 (78)
T ss_dssp CCCBCSSCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCccCCcCCCCCCCCCeeEccCccchhhhhhhHh
Confidence 357899998632 2333 4557999999999986
No 198
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=21.35 E-value=10 Score=34.00 Aligned_cols=47 Identities=21% Similarity=0.398 Sum_probs=32.1
Q ss_pred cccceeccccccccCccccC---CCC--CcchHHHHHHHHhccCCcccccccc
Q psy10334 30 AEVFRCFICIEKLRDTHLCP---HCS--KLCCLACIRQFLTEERSQCPHCRAS 77 (314)
Q Consensus 30 ~~~~~C~IC~~~~~~p~~~~---~Cg--H~FC~~Ci~~~~~~~~~~CP~Cr~~ 77 (314)
...-.||+|...-.--++.. .=| +.+|.-|=.+|--. ...||.|...
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~-R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYV-RIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECC-TTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeec-CcCCcCCCCC
Confidence 44688999997654433321 125 68899998888554 4689999764
No 199
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=21.32 E-value=20 Score=29.49 Aligned_cols=44 Identities=25% Similarity=0.552 Sum_probs=30.5
Q ss_pred ceeccccccccCccccCCCCCcchHHHHHHHHhc---cCCcccccccc
Q psy10334 33 FRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTE---ERSQCPHCRAS 77 (314)
Q Consensus 33 ~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~---~~~~CP~Cr~~ 77 (314)
-.|.+|.+- .+=+.+..|...|+..|+..-+.. +.-.||.|+..
T Consensus 3 ~~C~~C~~~-g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 3 TICRVCQKP-GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCBTTTCCC-SSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CcCccCCCC-CceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 469999864 234446678899999998765543 13469999864
No 200
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=20.91 E-value=44 Score=22.81 Aligned_cols=11 Identities=27% Similarity=0.540 Sum_probs=6.2
Q ss_pred ccceecccccc
Q psy10334 31 EVFRCFICIEK 41 (314)
Q Consensus 31 ~~~~C~IC~~~ 41 (314)
-...|+-|...
T Consensus 27 v~Y~C~~CG~~ 37 (70)
T 1twf_L 27 LKYICAECSSK 37 (70)
T ss_dssp CCEECSSSCCE
T ss_pred EEEECCCCCCc
Confidence 34566666554
No 201
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=20.86 E-value=24 Score=24.18 Aligned_cols=47 Identities=21% Similarity=0.511 Sum_probs=31.1
Q ss_pred ccceeccccccccC--ccccCCCCCcchHHHHHHHHh--------ccCCccccccccc
Q psy10334 31 EVFRCFICIEKLRD--THLCPHCSKLCCLACIRQFLT--------EERSQCPHCRASL 78 (314)
Q Consensus 31 ~~~~C~IC~~~~~~--p~~~~~CgH~FC~~Ci~~~~~--------~~~~~CP~Cr~~~ 78 (314)
+...| ||.....+ -|.+..|..=|...|+.---. .....||.|+...
T Consensus 15 ~~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 15 NALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp TCCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 34778 99988764 234566888899999853211 1246799997543
No 202
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.84 E-value=50 Score=23.01 Aligned_cols=30 Identities=20% Similarity=0.500 Sum_probs=12.0
Q ss_pred ceeccccccccCccccCCCCCcchHHHHHH
Q psy10334 33 FRCFICIEKLRDTHLCPHCSKLCCLACIRQ 62 (314)
Q Consensus 33 ~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~ 62 (314)
|.|..|...|.+-.....=|..||..|-.+
T Consensus 52 F~C~~C~~~L~~~~f~~~~g~~yC~~cy~~ 81 (90)
T 2dar_A 52 FNCAHCKNTMAYIGFVEEKGALYCELCYEK 81 (90)
T ss_dssp CBCSSSCCBCSSSCBEESSSCEECHHHHHH
T ss_pred CccCCCCCCCCCCEeEeECCEEECHHHHHH
Confidence 445555444443111111244555555443
No 203
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=20.01 E-value=35 Score=22.15 Aligned_cols=31 Identities=19% Similarity=0.311 Sum_probs=17.9
Q ss_pred cceeccccccccCc-cccCCCCCcchHHHHHHH
Q psy10334 32 VFRCFICIEKLRDT-HLCPHCSKLCCLACIRQF 63 (314)
Q Consensus 32 ~~~C~IC~~~~~~p-~~~~~CgH~FC~~Ci~~~ 63 (314)
-|.|..|...+.+. ... .=|..||..|-.+-
T Consensus 31 CF~C~~C~~~L~~~~~~~-~~g~~yC~~~y~~~ 62 (66)
T 1nyp_A 31 HFVCAKCEKPFLGHRHYE-RKGLAYCETHYNQL 62 (66)
T ss_dssp TCBCTTTCCBCSSSCCEE-ETTEEECHHHHHHH
T ss_pred cCEECCCCCCCCCCceEe-ECCcEECHHHHHHH
Confidence 46777777666542 222 23677777776543
Done!