RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10334
(314 letters)
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 46.5 bits (110), Expect = 1e-07
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 35 CFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHMTDLV 84
C IC E +D + P C L C +C+ + E CP CR + T+ +
Sbjct: 26 CKICAENDKDVKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPI 74
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 97
Score = 46.7 bits (110), Expect = 1e-07
Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 3/81 (3%)
Query: 20 STTSHVSRALAEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASLH 79
+ + L ++ RC C LR+ C + C C+ + CP C
Sbjct: 10 AHSRAALDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGT---GCPVCYTPAW 66
Query: 80 MTDLVNCRWMEEVTQHLDNLQ 100
+ DL R ++ + Q L+
Sbjct: 67 IQDLKINRQLDSMIQLCSKLR 87
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa)
[TaxId: 4530]}
Length = 55
Score = 40.6 bits (95), Expect = 8e-06
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 28 ALAEVFRCFICIEKLRD---THLCPHCSKLCCLACIRQFLTEERSQCPHCRASL 78
A+ + C +C+ +L D P C C+ +L S CP CR ++
Sbjct: 1 AMDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWL-GSHSTCPLCRLTV 53
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein
1 (RAG1), dimerization domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 41.1 bits (96), Expect = 9e-06
Identities = 19/52 (36%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 33 FRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHMTDLV 84
C IC L D + C L C CI + L S CP CR TDL
Sbjct: 24 ISCQICEHILAD-PVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLE 74
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 41.6 bits (97), Expect = 9e-06
Identities = 16/74 (21%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 25 VSRALAEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERS--QCPHCRASLHMTD 82
V A+ ++ C IC+E +++ C + C C+ + L +++ QCP C+ +
Sbjct: 14 VINAMQKILECPICLELIKEPVSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS 72
Query: 83 LVNCRWMEEVTQHL 96
L ++ + L
Sbjct: 73 LQESTRFSQLVEEL 86
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine
herpesvirus 1 [TaxId: 10326]}
Length = 68
Score = 40.7 bits (95), Expect = 1e-05
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 34 RCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASLH 79
RC IC+E + + C C CI +++ + CP C+ +
Sbjct: 7 RCPICLEDPSNYSMALPCLHAFCYVCITRWI-RQNPTCPLCKVPVE 51
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia
proto-oncoprotein PML {Human (Homo sapiens) [TaxId:
9606]}
Length = 56
Score = 36.8 bits (85), Expect = 1e-04
Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 5/51 (9%)
Query: 31 EVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHMT 81
+ RC C + + L P C C C+ QCP C+A +
Sbjct: 5 QFLRCQQCQAEAKCPKLLP-CLHTLCSGCLEA----SGMQCPICQAPWPLG 50
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 78
Score = 35.4 bits (81), Expect = 7e-04
Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 31 EVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHMTDLVNCRWME 90
E FRC I +E ++D + + I+++L CP + +L L ++
Sbjct: 7 EYFRCPISLELMKDPV-IVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLK 65
Query: 91 EVTQH 95
+
Sbjct: 66 SLIAL 70
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 35.1 bits (80), Expect = 8e-04
Identities = 9/57 (15%), Positives = 15/57 (26%), Gaps = 4/57 (7%)
Query: 31 EVFRCFICIEKLRDTH----LCPHCSKLCCLACIRQFLTEERSQCPHCRASLHMTDL 83
+ C C + C C +C+ CP C L ++
Sbjct: 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF 58
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 56
Score = 34.7 bits (79), Expect = 0.001
Identities = 9/53 (16%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 35 CFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHMTDLVNCR 87
C I + R L P + + + Q+ ++ P L + ++V
Sbjct: 3 CAISGKVPRRPVLSPKSRTIFEKSLLEQY-VKDTGNDPITNEPLSIEEIVEIV 54
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 52
Score = 32.0 bits (72), Expect = 0.007
Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 35 CFICIEKLRDTHLCP---HCSKLCCLACIRQFLTEERSQCPHCRASL 78
C +C+E L + C C C + T+E CP CR
Sbjct: 3 CPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY 49
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing
protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 80
Score = 31.7 bits (71), Expect = 0.017
Identities = 13/69 (18%), Positives = 21/69 (30%), Gaps = 1/69 (1%)
Query: 27 RALAEVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHMTDLVNC 86
R + + I E +R+ I + L P R+ L L+
Sbjct: 2 RDIPDYLCGKISFELMREPC-ITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPN 60
Query: 87 RWMEEVTQH 95
M+EV
Sbjct: 61 LAMKEVIDA 69
>d1jl1a_ c.55.3.1 (A:) RNase H (RNase HI) {Escherichia coli [TaxId:
562]}
Length = 152
Score = 32.7 bits (73), Expect = 0.024
Identities = 16/87 (18%), Positives = 25/87 (28%), Gaps = 2/87 (2%)
Query: 85 NCRWMEEVTQHLDNLQMNSKSSLQTYQRLFPNSTLCL--NVKNLLSELKLKYGLSIKLVW 142
+ T Q ++ +R + + NV IK W
Sbjct: 59 EHAEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 118
Query: 143 IPGHMNISGNCAVDLAAKQAQTSPDAE 169
+ GH N D A+ A +P E
Sbjct: 119 VKGHAGHPENERADELARAAAMNPTLE 145
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo
sapiens) [TaxId: 9606]}
Length = 98
Score = 31.7 bits (71), Expect = 0.027
Identities = 11/76 (14%), Positives = 24/76 (31%)
Query: 31 EVFRCFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRASLHMTDLVNCRWME 90
+ F I + D + P + I + L +++ + N E
Sbjct: 21 DEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKE 80
Query: 91 EVTQHLDNLQMNSKSS 106
++ + L + S S
Sbjct: 81 KIQRWLAERKQQSGPS 96
>d1mu2a1 c.55.3.1 (A:430-555) HIV RNase H (Domain of reverse
transcriptase) {Human immunodeficiency virus type 2
[TaxId: 11709]}
Length = 126
Score = 32.2 bits (72), Expect = 0.030
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 138 IKLVWIPGHMNISGNCAVDLAAKQA 162
I + W+P H I GN VD Q
Sbjct: 101 IYVAWVPAHKGIGGNQEVDHLVSQG 125
>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 59
Score = 30.2 bits (68), Expect = 0.036
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 35 CFICIEKLRDTHL--CPHCSKLCCLACIRQFLTEERSQCPHC 74
C+ C +L+D H+ C C + C+ C F+ + CP C
Sbjct: 18 CYGCQGELKDQHVYVCAVCQNVFCVDC-DVFVHDSLHSCPGC 58
Score = 24.0 bits (52), Expect = 5.4
Identities = 4/21 (19%), Positives = 7/21 (33%)
Query: 55 CCLACIRQFLTEERSQCPHCR 75
C C + + C C+
Sbjct: 17 FCYGCQGELKDQHVYVCAVCQ 37
>d1rila_ c.55.3.1 (A:) RNase H (RNase HI) {Thermus thermophilus
[TaxId: 274]}
Length = 147
Score = 29.5 bits (65), Expect = 0.25
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 138 IKLVWIPGHMNISGNCAVDLAAKQA 162
++ ++ GH N VD A++
Sbjct: 116 VRFHFVKGHTGHPENERVDREARRQ 140
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain
{Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8
[TaxId: 37296]}
Length = 60
Score = 27.9 bits (61), Expect = 0.26
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 5/51 (9%)
Query: 31 EVFRCFICIEKLRDTHLCPHCSKLC----CLACIRQFLTEE-RSQCPHCRA 76
+V C+IC E+L + +C+ +LT + C C
Sbjct: 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGV 55
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF
ubiquitin ligase complex {Human (Homo sapiens) [TaxId:
9606]}
Length = 88
Score = 27.8 bits (61), Expect = 0.53
Identities = 8/42 (19%), Positives = 12/42 (28%), Gaps = 1/42 (2%)
Query: 35 CFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERSQCPHCRA 76
T C+ CI ++L + R CP
Sbjct: 41 NQASATSEECTVAWGVCNHAFHFHCISRWL-KTRQVCPLDNR 81
>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 64
Score = 26.6 bits (58), Expect = 1.0
Identities = 13/58 (22%), Positives = 17/58 (29%), Gaps = 8/58 (13%)
Query: 30 AEVFRCFICIEK---LRDTHLCPHCSKLCCLACIRQFLTEERSQ-----CPHCRASLH 79
EV C C + H C C + C C + S+ C C L
Sbjct: 6 NEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNALTPSSKKPVRVCDACFNDLQ 63
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 61
Score = 25.7 bits (56), Expect = 1.6
Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 4/46 (8%)
Query: 35 CFICIEKLRDTHLCPHCSKLCCLACIRQFLTEERS---QCPHCRAS 77
C +C + + C C + C+ L E + CP C
Sbjct: 12 CRVC-KDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56
>d2cs3a1 g.44.1.3 (A:8-87) Protein c14orf4 (KIAA1865) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 26.0 bits (57), Expect = 1.8
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 6/42 (14%)
Query: 34 RCFICIEKLRDTHL--CPHC-SKLCCLACIRQFLTEERSQCP 72
C IC E+L DTH CP S C C R+ + ++Q
Sbjct: 10 CCTICHERLEDTHFVQCPSVPSHKFCFPCSRESI---KAQGA 48
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 114
Score = 25.8 bits (55), Expect = 3.8
Identities = 8/38 (21%), Positives = 11/38 (28%), Gaps = 4/38 (10%)
Query: 43 RDTHLCPHCSKLCCLACIRQFLT----EERSQCPHCRA 76
CS L C+ + QCP C+
Sbjct: 53 MVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKT 90
>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein
19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 88
Score = 25.4 bits (55), Expect = 4.0
Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 9/54 (16%)
Query: 34 RCFICIEK---LRDTHLCPHCSKLCCLACIRQFLTEERSQ------CPHCRASL 78
RC+ C K + + C +C + C C+ R+ C C L
Sbjct: 11 RCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTIL 64
>d1seja1 c.71.1.1 (A:3-180) Bifunctional enzyme dihydrofolate
reductase-thymidylate synthase, DFR domain
{Cryptosporidium hominis [TaxId: 237895]}
Length = 178
Score = 26.3 bits (57), Expect = 4.5
Identities = 8/51 (15%), Positives = 17/51 (33%), Gaps = 5/51 (9%)
Query: 159 AKQAQTSPDAEILNVTHTDLKS-----FFKKIPSEKWKLTWSYETCDNKLK 204
+ A + + +T L+ +F +IP + S C +
Sbjct: 117 YRDALKDNFVDRIYLTRVALEDIEFDTYFPEIPETFLPVYMSQTFCTKNIS 167
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 70
Score = 24.6 bits (53), Expect = 5.7
Identities = 12/46 (26%), Positives = 15/46 (32%), Gaps = 4/46 (8%)
Query: 35 CFICIEKLRDTHLCPHCSKLCCLACIRQFLT---EERSQCPHCRAS 77
C +C +K D +C C L C L E C C
Sbjct: 10 CRVC-QKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 54
>d1s1ta1 c.55.3.1 (A:430-539) HIV RNase H (Domain of reverse
transcriptase) {Human immunodeficiency virus type 1
[TaxId: 11676]}
Length = 110
Score = 24.6 bits (53), Expect = 8.2
Identities = 13/81 (16%), Positives = 29/81 (35%), Gaps = 4/81 (4%)
Query: 66 EERSQCPHCRASLHMTDLVNCRWMEEVTQHLDNLQMNSKSSLQTYQRLFPNSTLCLNVKN 125
++ + +++ + N+ +S+ +L Q S L V
Sbjct: 34 RQKVVTLTDTTNQKTELQAIYLALQDSGLEV-NIVTDSQYALGIIQAQPDQSESEL-VNQ 91
Query: 126 LLSELKLKYGLSIKLVWIPGH 146
++ +L K + L W+P H
Sbjct: 92 IIEQLIKKE--KVYLAWVPAH 110
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.135 0.420
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,132,960
Number of extensions: 51764
Number of successful extensions: 291
Number of sequences better than 10.0: 1
Number of HSP's gapped: 272
Number of HSP's successfully gapped: 46
Length of query: 314
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 229
Effective length of database: 1,240,546
Effective search space: 284085034
Effective search space used: 284085034
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.7 bits)