BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10335
(177 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3U5E|S Chain S, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome A
pdb|3U5I|S Chain S, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome B
pdb|4B6A|S Chain S, Cryo-Em Structure Of The 60s Ribosomal Subunit In Complex
With Arx1 And Rei1
Length = 172
Score = 195 bits (495), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 93/171 (54%), Positives = 126/171 (73%), Gaps = 3/171 (1%)
Query: 7 LKEYEVIGRKLPTEKEKITPLYKMRIFAPDDIVAKSRFWYFLRQLKKFKKSTGEIVSLKL 66
KEY+VIGR+LPTE L++MRIFA ++++AKSR+WYFL++L K KK++GEIVS+
Sbjct: 4 FKEYQVIGRRLPTESVPEPKLFRMRIFASNEVIAKSRYWYFLQKLHKVKKASGEIVSINQ 63
Query: 67 ISEKSPTKIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRARAHSIQI 126
I+E PTK+KNFG+W+RYDSRSGTHNMY+E RD+S AV Y+DM ARHRAR SI I
Sbjct: 64 INEAHPTKVKNFGVWVRYDSRSGTHNMYKEIRDVSRVAAVETLYQDMAARHRARFRSIHI 123
Query: 127 IKL-EVVKASACRRPLVKQFHDSRIRFPLPKRIQHVNRMNLFSSRRPKTYF 176
+K+ E+ K + +R VKQF ++FPLP R+Q + FS +RP T++
Sbjct: 124 LKVAEIEKTADVKRQYVKQFLTKDLKFPLPHRVQKSTKT--FSYKRPSTFY 172
>pdb|3IZR|S Chain S, Localization Of The Large Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 178
Score = 175 bits (443), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 79/146 (54%), Positives = 109/146 (74%)
Query: 9 EYEVIGRKLPTEKEKITPLYKMRIFAPDDIVAKSRFWYFLRQLKKFKKSTGEIVSLKLIS 68
+Y+V+GR LPT ++ +Y+M+++A +++ AKS+FWYFLR+LKK KKS G+I+++ I
Sbjct: 8 QYQVVGRGLPTPTDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQILAINEIF 67
Query: 69 EKSPTKIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRARAHSIQIIK 128
EK+PT IKN+GIWLRY SR+G HNMY+EYRD +++GAV Q Y +M +RHR R IQIIK
Sbjct: 68 EKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIK 127
Query: 129 LEVVKASACRRPLVKQFHDSRIRFPL 154
V C+R KQFH S I+FPL
Sbjct: 128 TATVHFKLCKRDNTKQFHKSDIKFPL 153
>pdb|3IZS|S Chain S, Localization Of The Large Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
Length = 167
Score = 175 bits (443), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 79/146 (54%), Positives = 109/146 (74%)
Query: 9 EYEVIGRKLPTEKEKITPLYKMRIFAPDDIVAKSRFWYFLRQLKKFKKSTGEIVSLKLIS 68
+Y+V+GR LPT ++ +Y+M+++A +++ AKS+FWYFLR+LKK KKS G+I+++ I
Sbjct: 8 QYQVVGRGLPTPTDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQILAINEIF 67
Query: 69 EKSPTKIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRARAHSIQIIK 128
EK+PT IKN+GIWLRY SR+G HNMY+EYRD +++GAV Q Y +M +RHR R IQIIK
Sbjct: 68 EKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIK 127
Query: 129 LEVVKASACRRPLVKQFHDSRIRFPL 154
V C+R KQFH S I+FPL
Sbjct: 128 TATVHFKLCKRDNTKQFHKSDIKFPL 153
>pdb|4A18|X Chain X, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 1
pdb|4A1B|X Chain X, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 3.
pdb|4A1D|X Chain X, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 4.
pdb|4A19|X Chain X, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 2
Length = 189
Score = 137 bits (346), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 108/172 (62%), Gaps = 3/172 (1%)
Query: 7 LKEYEVIGRKLPTEKEKITPLYKMRIFAPDDIVAKSRFWYFLRQLKKFKKSTGEIVSLKL 66
+++Y V +LP E+ + +MR+FA D++ AK++FWY +R+L K K+S G I+S+
Sbjct: 18 VRQYVVSAARLPIEQGTKPEILQMRVFARDEVHAKTKFWYNMRKLNKIKRSQGRILSVNE 77
Query: 67 ISEKSPTKIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRARAHSIQI 126
I EKS +K +GI L+Y SR+ HNMY+EYRD+S++GAV+Q +DM HRA+ +IQI
Sbjct: 78 IYEKSLNTVKTYGIVLKYQSRTAIHNMYKEYRDVSLNGAVSQLIQDMAGNHRAQPDTIQI 137
Query: 127 IKLEVVKASACRRPLVKQFHDSRIRFPLPKRIQHVNRM---NLFSSRRPKTY 175
I+ ++ +RP ++ ++FP+ K I + ++ + RP T+
Sbjct: 138 IRTATLEPKDIKRPATLAMRNAALKFPIVKTIHRPSEKKYRTVYKATRPTTF 189
>pdb|3ZF7|S Chain S, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 179
Score = 120 bits (302), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 97/152 (63%), Gaps = 2/152 (1%)
Query: 7 LKEYEVIGRKLPTEKEKITPLYKMRIFAPDDIVAKSRFWYFLRQLKKFKKSTGEIVSLKL 66
L+ Y V+GR+ P+EK +YK +FAP+ +VAKSRFW +R+ K K + G+++S K+
Sbjct: 6 LRHYCVVGRETPSEKNPQPTVYKFEVFAPNFVVAKSRFWRMMREKNKVKSTHGDVLSCKV 65
Query: 67 ISEKSPTKIKNFGIWLRYDS-RSGTHNMYREYRDLSVSGAVTQCYRDMGARHRARAHSIQ 125
+ ++ +N+ + + Y S R G +M +E+RD+ +GAV+Q Y D+ +RHRAR H+I+
Sbjct: 66 VKDRK-LAARNYSVDIAYYSQRCGYTHMVKEFRDVCKAGAVSQAYNDLASRHRARYHNIE 124
Query: 126 IIKLEVVKASACRRPLVKQFHDSRIRFPLPKR 157
++ ++ + RR V QFH + FPL +R
Sbjct: 125 VLGVKSIPNHEVRRLNVAQFHPHNLSFPLLQR 156
>pdb|3RU0|A Chain A, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
pdb|3RU0|B Chain B, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
Length = 438
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 88 SGTHNMYREYRDLSVSGAVTQCYRDM 113
+G H + R RD+ V +T CY DM
Sbjct: 219 NGPHLLLRAVRDIEVGEELTICYLDM 244
>pdb|3OXF|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
pdb|3OXF|B Chain B, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
Length = 436
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 88 SGTHNMYREYRDLSVSGAVTQCYRDM 113
+G H + R RD+ V +T CY DM
Sbjct: 217 NGPHLLLRAVRDIEVGEELTICYLDM 242
>pdb|3PDN|A Chain A, Crystal Structure Of Smyd3 In Complex With
Methyltransferase Inhibitor Sinefungin
pdb|3OXL|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Ii)
Length = 428
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 88 SGTHNMYREYRDLSVSGAVTQCYRDM 113
+G H + R RD+ V +T CY DM
Sbjct: 217 NGPHLLLRAVRDIEVGEELTICYLDM 242
>pdb|3QWP|A Chain A, Crystal Structure Of Set And Mynd Domain Containing 3;
Zinc Finger Mynd Domain-Containing Protein 1
Length = 429
Score = 27.3 bits (59), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 88 SGTHNMYREYRDLSVSGAVTQCYRDM 113
+G H + R RD+ V +T CY DM
Sbjct: 218 NGPHLLLRAVRDIEVGEELTICYLDM 243
>pdb|3OXG|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Iii)
Length = 464
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 88 SGTHNMYREYRDLSVSGAVTQCYRDM 113
+G H + R RD+ V +T CY DM
Sbjct: 253 NGPHLLLRAVRDIEVGEELTICYLDM 278
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.137 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,868,120
Number of Sequences: 62578
Number of extensions: 178915
Number of successful extensions: 575
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 561
Number of HSP's gapped (non-prelim): 17
length of query: 177
length of database: 14,973,337
effective HSP length: 92
effective length of query: 85
effective length of database: 9,216,161
effective search space: 783373685
effective search space used: 783373685
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (23.1 bits)