Query psy10335
Match_columns 177
No_of_seqs 148 out of 253
Neff 4.2
Searched_HMMs 46136
Date Fri Aug 16 15:21:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10335.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10335hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0829|consensus 100.0 3.4E-97 7E-102 598.9 11.5 169 8-176 1-169 (169)
2 PF01775 Ribosomal_L18ae: Ribo 100.0 1.4E-72 3E-77 441.3 11.8 124 7-130 1-124 (124)
3 PRK00773 rplX 50S ribosomal pr 100.0 8.8E-34 1.9E-38 205.8 6.8 73 75-147 2-74 (76)
4 COG2157 RPL20A Ribosomal prote 100.0 5E-30 1.1E-34 189.9 6.0 84 70-153 2-85 (85)
5 PRK00773 rplX 50S ribosomal pr 52.2 29 0.00062 25.3 4.1 60 7-69 2-61 (76)
6 KOG0126|consensus 42.2 29 0.00063 30.1 3.2 31 59-90 60-90 (219)
7 COG5347 GTPase-activating prot 40.5 33 0.00073 31.1 3.5 34 57-91 16-50 (319)
8 KOG0704|consensus 38.8 44 0.00095 31.4 4.0 43 47-91 6-49 (386)
9 KOG0149|consensus 34.1 30 0.00066 30.6 2.2 24 58-81 36-59 (247)
10 PHA03066 Hypothetical protein; 29.0 33 0.00071 27.0 1.4 22 71-92 60-81 (110)
11 COG3500 Phage protein D [Gener 28.3 21 0.00046 33.0 0.3 40 106-154 121-160 (350)
12 COG0509 GcvH Glycine cleavage 27.1 27 0.00058 28.2 0.6 27 57-83 75-104 (131)
13 KOG0036|consensus 25.5 42 0.00091 32.2 1.7 71 61-131 164-256 (463)
14 COG1727 RPL18A Ribosomal prote 24.9 15 0.00033 29.4 -1.1 24 50-73 91-114 (122)
15 PF06129 Chordopox_G3: Chordop 22.8 51 0.0011 25.8 1.4 14 79-92 67-80 (109)
16 PF11543 UN_NPL4: Nuclear pore 20.9 74 0.0016 22.9 1.9 40 80-124 5-44 (80)
No 1
>KOG0829|consensus
Probab=100.00 E-value=3.4e-97 Score=598.92 Aligned_cols=169 Identities=67% Similarity=1.132 Sum_probs=167.7
Q ss_pred eEEEEEeecCCCCCCCCCCcEEEEeecCCceEEehhhHHHHHHhhhcccccccEEEEEEeccCCCceeeeeeEEEEEecC
Q psy10335 8 KEYEVIGRKLPTEKEKITPLYKMRIFAPDDIVAKSRFWYFLRQLKKFKKSTGEIVSLKLISEKSPTKIKNFGIWLRYDSR 87 (177)
Q Consensus 8 ~eY~Vvgr~lPt~k~p~P~ly~m~iFA~n~vvAKSrFWyfl~~l~K~Kks~GeIv~~~~i~Ek~p~~VkNfgIwlrY~Sr 87 (177)
+||+||||+||||++|+|+||+|+|||||||+|||||||||++|+|||||+||||+|+||+|++|+.|||||||||||||
T Consensus 1 kEY~VvGr~lPTe~~p~p~l~~m~ifa~N~V~AKsrfwyfl~~l~KvKks~Geiv~i~qi~E~~p~~vkNfGIwlrYdSR 80 (169)
T KOG0829|consen 1 KEYQVVGRALPTEKEPTPKLYRMRIFAPNHVVAKSRFWYFLSKLKKVKKSSGEIVAINQIFEKSPLKVKNFGIWLRYDSR 80 (169)
T ss_pred CceEEeeeecCCCCCCCCceEEEEEeccceeehhHHHHHHHHHHHHHhhcCceEEEeceecCCCCceeeeeEEEEEEccC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccceeEeeccChhhHHHHHHHHhcccccccCCceeEEEeEEecCCcccChhhhhhhcCCCcCcCccccccccCCCce
Q psy10335 88 SGTHNMYREYRDLSVSGAVTQCYRDMGARHRARAHSIQIIKLEVVKASACRRPLVKQFHDSRIRFPLPKRIQHVNRMNLF 167 (177)
Q Consensus 88 sgthNmyKEyRdlt~~gAV~q~Y~dmgsRHrar~~sIqIikVeeI~~~~~rrp~vkQf~~~kikFPl~~r~~~~~~~~~F 167 (177)
||||||||||||+|.+|||||||+|||||||||+++||||+|+||++++|+|+.+|||||++|+||||||+++++.+++|
T Consensus 81 sG~HNmYkEyRd~t~~gAV~q~y~dMaaRhRar~~~I~Iikv~~v~a~~~kR~~vkqFhd~kikFPL~~rv~~~k~~~~f 160 (169)
T KOG0829|consen 81 SGTHNMYKEYRDTTRVGAVEQCYRDMAARHRARFRSIQIIKVAEVPAEDCKRAYVKQFHDSKIKFPLPHRVVNRKSKKTF 160 (169)
T ss_pred CcchHHHHHHHHhhhhhHHHHHHHHHHHHhhhcccceeEEEEeeeeHHHhchHHHHHhhccCcccccccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCcccC
Q psy10335 168 SSRRPKTYF 176 (177)
Q Consensus 168 ~~~rP~t~~ 176 (177)
++.||||||
T Consensus 161 s~~rP~tf~ 169 (169)
T KOG0829|consen 161 STKRPSTFF 169 (169)
T ss_pred ccCCCcccC
Confidence 999999997
No 2
>PF01775 Ribosomal_L18ae: Ribosomal L18ae/LX protein domain; InterPro: IPR023573 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents the eukaryotic 60S ribosomal protein L18ae [] and the archaea 50S ribosomal protein LX. Rat ribosomal protein L18 is homologous to Xenopus laevis L14 [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 4A1D_X 4A1B_X 4A18_X 4A19_X 2JXT_A 3IZR_S 3IZS_S.
Probab=100.00 E-value=1.4e-72 Score=441.31 Aligned_cols=124 Identities=73% Similarity=1.208 Sum_probs=112.4
Q ss_pred eeEEEEEeecCCCCCCCCCCcEEEEeecCCceEEehhhHHHHHHhhhcccccccEEEEEEeccCCCceeeeeeEEEEEec
Q psy10335 7 LKEYEVIGRKLPTEKEKITPLYKMRIFAPDDIVAKSRFWYFLRQLKKFKKSTGEIVSLKLISEKSPTKIKNFGIWLRYDS 86 (177)
Q Consensus 7 l~eY~Vvgr~lPt~k~p~P~ly~m~iFA~n~vvAKSrFWyfl~~l~K~Kks~GeIv~~~~i~Ek~p~~VkNfgIwlrY~S 86 (177)
|+||+|+||+||||++|+|+||+|+|||||+|+|||||||||++|+|+||++||||+|++|+|++|+.||||||||+|||
T Consensus 1 l~ey~vvgr~lpt~k~~~p~iy~m~ifa~n~vvAkSrfwy~~~~~~K~Kk~~geiv~~~~i~ek~p~~VKnfgI~lry~s 80 (124)
T PF01775_consen 1 LKEYQVVGRKLPTEKEPNPPIYRMRIFAPNHVVAKSRFWYFLRKLKKMKKTSGEIVSCKEIFEKNPTKVKNFGIWLRYDS 80 (124)
T ss_dssp -EEEEEEEEETT-STTS---EEEEEEEESSHHHHHHHHHHHHHHCTS--STTEEEEEEEEE-SSSTTS-EEEEEEEEEEE
T ss_pred CeEEEEEEecCCCCCCCCCCeEEEEEecCCcEEEEhhHHHHHHHHHhhhcccceEEEeEcccCCCCcceeEEEEEEEEec
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccceeEeeccChhhHHHHHHHHhcccccccCCceeEEEeE
Q psy10335 87 RSGTHNMYREYRDLSVSGAVTQCYRDMGARHRARAHSIQIIKLE 130 (177)
Q Consensus 87 rsgthNmyKEyRdlt~~gAV~q~Y~dmgsRHrar~~sIqIikVe 130 (177)
|+|+|||||||||+|++|||||||+||||||++|+++|||++|+
T Consensus 81 r~g~~nfyKEyra~s~~~Aveq~YsdmGSrHrvkr~~I~I~~Ve 124 (124)
T PF01775_consen 81 RSGTHNFYKEYRALSENGAVEQVYSDMGSRHRVKRSSIQIIKVE 124 (124)
T ss_dssp SSCEEEEEEEEEESCHHHHHHHHHHHHHHTTT--GGGEEEEEEE
T ss_pred CCccEEEEEEeccCCHHHHHHHHHHHhhhhhCCCccceEEEEeC
Confidence 99999999999999999999999999999999999999999996
No 3
>PRK00773 rplX 50S ribosomal protein LX; Validated
Probab=100.00 E-value=8.8e-34 Score=205.79 Aligned_cols=73 Identities=16% Similarity=0.336 Sum_probs=71.7
Q ss_pred eeeeeEEEEEecCCccccceeEeeccChhhHHHHHHHHhcccccccCCceeEEEeEEecCCcccChhhhhhhc
Q psy10335 75 IKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRARAHSIQIIKLEVVKASACRRPLVKQFHD 147 (177)
Q Consensus 75 VkNfgIwlrY~SrsgthNmyKEyRdlt~~gAV~q~Y~dmgsRHrar~~sIqIikVeeI~~~~~rrp~vkQf~~ 147 (177)
+||||||++|+||+|+|||||||||++++|||+|||+||||||++++++|+|++|+||+++||+||+++||..
T Consensus 2 ~k~f~V~g~~~~~~~~~~f~Ke~ra~~~~~Ave~~Ys~~gSrH~~kr~~I~I~~V~ei~~~e~~~~~vkq~~~ 74 (76)
T PRK00773 2 MKIYRVKGTFLAGDEWQKFTKEVRALNEKDALEKVYSLFGSKHKVKRTQIKIEEVSEISPEEAEDPRVRELAK 74 (76)
T ss_pred ceEEEEEEEEEcCCCeEEEEEEEecCCHHHHHHHHHHHHHhhcCCCcccEEEEEEEEeCHHHcCCHHHHHHhh
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999974
No 4
>COG2157 RPL20A Ribosomal protein L20A (L18A) [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=5e-30 Score=189.88 Aligned_cols=84 Identities=35% Similarity=0.672 Sum_probs=81.7
Q ss_pred CCCceeeeeeEEEEEecCCccccceeEeeccChhhHHHHHHHHhcccccccCCceeEEEeEEecCCcccChhhhhhhcCC
Q psy10335 70 KSPTKIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRARAHSIQIIKLEVVKASACRRPLVKQFHDSR 149 (177)
Q Consensus 70 k~p~~VkNfgIwlrY~SrsgthNmyKEyRdlt~~gAV~q~Y~dmgsRHrar~~sIqIikVeeI~~~~~rrp~vkQf~~~k 149 (177)
..|..++|+|||+.|||++|+||||||+||+++++|++.+||||||||++++++|+|++|+||+++|+.||.|+||++.+
T Consensus 2 ~~~K~f~V~G~~~~~~~~~~~~kf~Kevra~~e~~AiE~vYS~~gsrhkvkR~~I~I~~V~Ei~pedv~d~~vk~L~~~~ 81 (85)
T COG2157 2 PMPKIFRVKGIWIFYDSRSGWHKFTKEVRALKEEDAIEKVYSDFGSRHKVKRSSIKIEEVEEIEPEDVEDPVVKRLLTED 81 (85)
T ss_pred CcceEEEEeeEEEEecCCCcceehhHHhhhcCHHHHHHHHHHHhhhhccccccceeEEEEEecChhhcccHHHHHHhccc
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCc
Q psy10335 150 IRFP 153 (177)
Q Consensus 150 ikFP 153 (177)
++||
T Consensus 82 ~~~~ 85 (85)
T COG2157 82 LKFP 85 (85)
T ss_pred ccCC
Confidence 9998
No 5
>PRK00773 rplX 50S ribosomal protein LX; Validated
Probab=52.19 E-value=29 Score=25.25 Aligned_cols=60 Identities=20% Similarity=0.219 Sum_probs=50.8
Q ss_pred eeEEEEEeecCCCCCCCCCCcEEEEeecCCceEEehhhHHHHHHhhhcccccccEEEEEEecc
Q psy10335 7 LKEYEVIGRKLPTEKEKITPLYKMRIFAPDDIVAKSRFWYFLRQLKKFKKSTGEIVSLKLISE 69 (177)
Q Consensus 7 l~eY~Vvgr~lPt~k~p~P~ly~m~iFA~n~vvAKSrFWyfl~~l~K~Kks~GeIv~~~~i~E 69 (177)
++.|.|.|+-.... .+.=|.=.+=|+|+-.|-.+-.--|--.+++|.++=+|+.+.+|.+
T Consensus 2 ~k~f~V~g~~~~~~---~~~~f~Ke~ra~~~~~Ave~~Ys~~gSrH~~kr~~I~I~~V~ei~~ 61 (76)
T PRK00773 2 MKIYRVKGTFLAGD---EWQKFTKEVRALNEKDALEKVYSLFGSKHKVKRTQIKIEEVSEISP 61 (76)
T ss_pred ceEEEEEEEEEcCC---CeEEEEEEEecCCHHHHHHHHHHHHHhhcCCCcccEEEEEEEEeCH
Confidence 67899999966433 3455566677999999999999999999999999999999999954
No 6
>KOG0126|consensus
Probab=42.19 E-value=29 Score=30.11 Aligned_cols=31 Identities=42% Similarity=0.727 Sum_probs=26.2
Q ss_pred ccEEEEEEeccCCCceeeeeeEEEEEecCCcc
Q psy10335 59 GEIVSLKLISEKSPTKIKNFGIWLRYDSRSGT 90 (177)
Q Consensus 59 GeIv~~~~i~Ek~p~~VkNfgIwlrY~Srsgt 90 (177)
||||.++-|.++..++-|+|. +|+|.....|
T Consensus 60 Ge~vdinLiRDk~TGKSKGFa-FLcYEDQRST 90 (219)
T KOG0126|consen 60 GEIVDINLIRDKKTGKSKGFA-FLCYEDQRST 90 (219)
T ss_pred CceEEEEEEecCCCCcccceE-EEEecCccce
Confidence 999999999999999999997 6888644333
No 7
>COG5347 GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion]
Probab=40.49 E-value=33 Score=31.14 Aligned_cols=34 Identities=26% Similarity=0.339 Sum_probs=24.5
Q ss_pred ccccEEEEEEeccCCCceee-eeeEEEEEecCCccc
Q psy10335 57 STGEIVSLKLISEKSPTKIK-NFGIWLRYDSRSGTH 91 (177)
Q Consensus 57 s~GeIv~~~~i~Ek~p~~Vk-NfgIwlrY~Srsgth 91 (177)
...+=-.|-.---.+|.-+= ||||+|+-| |+|.|
T Consensus 16 ~~~~Nk~CaDCga~~P~W~S~nlGvfiCi~-CagvH 50 (319)
T COG5347 16 SDSSNKKCADCGAPNPTWASVNLGVFLCID-CAGVH 50 (319)
T ss_pred hccccCccccCCCCCCceEecccCeEEEee-cchhh
Confidence 33333456666667788876 999999987 67888
No 8
>KOG0704|consensus
Probab=38.83 E-value=44 Score=31.35 Aligned_cols=43 Identities=21% Similarity=0.317 Sum_probs=29.4
Q ss_pred HHHHhhhcccccccEEEEEEeccCCCceee-eeeEEEEEecCCccc
Q psy10335 47 FLRQLKKFKKSTGEIVSLKLISEKSPTKIK-NFGIWLRYDSRSGTH 91 (177)
Q Consensus 47 fl~~l~K~Kks~GeIv~~~~i~Ek~p~~Vk-NfgIwlrY~Srsgth 91 (177)
-+|.|..+|+..+- =-|=+.--++|--|- +||||++-+ |||.|
T Consensus 6 trr~L~~lkp~deN-k~CfeC~a~NPQWvSvsyGIfICLE-CSG~H 49 (386)
T KOG0704|consen 6 TRRVLLELKPQDEN-KKCFECGAPNPQWVSVSYGIFICLE-CSGKH 49 (386)
T ss_pred HHHHHHhcCccccC-CceeecCCCCCCeEeecccEEEEEe-cCCcc
Confidence 35777777773222 234445567898887 899999976 56766
No 9
>KOG0149|consensus
Probab=34.06 E-value=30 Score=30.64 Aligned_cols=24 Identities=33% Similarity=0.562 Sum_probs=22.0
Q ss_pred cccEEEEEEeccCCCceeeeeeEE
Q psy10335 58 TGEIVSLKLISEKSPTKIKNFGIW 81 (177)
Q Consensus 58 ~GeIv~~~~i~Ek~p~~VkNfgIw 81 (177)
=||||....|-++++.+=|+||-.
T Consensus 36 fGeI~eavvitd~~t~rskGyGfV 59 (247)
T KOG0149|consen 36 FGEIVEAVVITDKNTGRSKGYGFV 59 (247)
T ss_pred hCceEEEEEEeccCCccccceeeE
Confidence 399999999999999999999943
No 10
>PHA03066 Hypothetical protein; Provisional
Probab=28.99 E-value=33 Score=27.04 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=17.2
Q ss_pred CCceeeeeeEEEEEecCCcccc
Q psy10335 71 SPTKIKNFGIWLRYDSRSGTHN 92 (177)
Q Consensus 71 ~p~~VkNfgIwlrY~SrsgthN 92 (177)
+|...-.=-||+.|||++|+.-
T Consensus 60 ~~~~~~~~~v~~~Yds~~~~Vt 81 (110)
T PHA03066 60 DPETVISTQVNTYYNSSIGTVT 81 (110)
T ss_pred CCCCcccceEEEEEcCcCCeEE
Confidence 4556666679999999999853
No 11
>COG3500 Phage protein D [General function prediction only]
Probab=28.27 E-value=21 Score=33.04 Aligned_cols=40 Identities=28% Similarity=0.459 Sum_probs=32.8
Q ss_pred HHHHHHHhcccccccCCceeEEEeEEecCCcccChhhhhhhcCCCcCcC
Q psy10335 106 VTQCYRDMGARHRARAHSIQIIKLEVVKASACRRPLVKQFHDSRIRFPL 154 (177)
Q Consensus 106 V~q~Y~dmgsRHrar~~sIqIikVeeI~~~~~rrp~vkQf~~~kikFPl 154 (177)
+..+-+|||++|.... .|++.++.-|+|-|...|++.|.+
T Consensus 121 lsdi~~eIAa~hgLt~---------av~~t~~~~~~idQ~~ESD~~FL~ 160 (350)
T COG3500 121 LSDIASEIAAEHGLTA---------AVSATQVAHPHIDQYYESDINFLL 160 (350)
T ss_pred HHHHHHHHHHHcCCcc---------ccccccccchhhhhcccccHHHHH
Confidence 3445589999999854 456688999999999999999975
No 12
>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=27.09 E-value=27 Score=28.20 Aligned_cols=27 Identities=30% Similarity=0.598 Sum_probs=23.3
Q ss_pred ccccEEEEEEeccCCCceeee--ee-EEEE
Q psy10335 57 STGEIVSLKLISEKSPTKIKN--FG-IWLR 83 (177)
Q Consensus 57 s~GeIv~~~~i~Ek~p~~VkN--fg-Iwlr 83 (177)
-+||||.+|+-.+++|..|.. || =||.
T Consensus 75 vsGeVvevN~~l~~~PeliN~dPyg~gWi~ 104 (131)
T COG0509 75 VSGEVVEVNEALVDSPELINSDPYGEGWIV 104 (131)
T ss_pred CceeEEEechhhhcChhhhccCCCCCceEE
Confidence 389999999999999999985 87 4765
No 13
>KOG0036|consensus
Probab=25.53 E-value=42 Score=32.17 Aligned_cols=71 Identities=20% Similarity=0.339 Sum_probs=56.6
Q ss_pred EEEEEE---eccCCCceeeeeeEEEEE---------ecCCcccccee----------EeeccChhhHHHHHHHHhccccc
Q psy10335 61 IVSLKL---ISEKSPTKIKNFGIWLRY---------DSRSGTHNMYR----------EYRDLSVSGAVTQCYRDMGARHR 118 (177)
Q Consensus 61 Iv~~~~---i~Ek~p~~VkNfgIwlrY---------~SrsgthNmyK----------EyRdlt~~gAV~q~Y~dmgsRHr 118 (177)
|+.++| |.|.-...++-.|+|++| -||+.|-++-+ .+.-++..+|+..+|++=|-+-=
T Consensus 164 ~idigE~~~iPdg~s~~e~~~g~ww~~liAGGiAGavSRTcTAPlDRLKV~lqv~~~k~~~~~v~~~~k~l~~eggiksf 243 (463)
T KOG0036|consen 164 LIDIGEDAVLPDGDSKLENDSGRWWGFLIAGGIAGAVSRTCTAPLDRLKVFLQVQSPKANILPLLKAVKSLWREGGIKSF 243 (463)
T ss_pred EEEccccccCCcchHHHHhcccchhhhhccccccccccccccCchhhhheeeeccCCCCCcccHHHHHHHHHhccCceee
Confidence 566554 677777888899999997 38888876532 23346788999999999999988
Q ss_pred ccCCceeEEEeEE
Q psy10335 119 ARAHSIQIIKLEV 131 (177)
Q Consensus 119 ar~~sIqIikVee 131 (177)
-|-+.|-++||.-
T Consensus 244 ~rGNGiNViKvaP 256 (463)
T KOG0036|consen 244 FRGNGLNVIKVAP 256 (463)
T ss_pred eccCceeeEEecc
Confidence 9999999999864
No 14
>COG1727 RPL18A Ribosomal protein L18E [Translation, ribosomal structure and biogenesis]
Probab=24.89 E-value=15 Score=29.37 Aligned_cols=24 Identities=25% Similarity=0.542 Sum_probs=21.6
Q ss_pred HhhhcccccccEEEEEEeccCCCc
Q psy10335 50 QLKKFKKSTGEIVSLKLISEKSPT 73 (177)
Q Consensus 50 ~l~K~Kks~GeIv~~~~i~Ek~p~ 73 (177)
-..|+.++.||.+...|+.|.+|.
T Consensus 91 A~~KI~~aGGe~~tl~el~e~nPk 114 (122)
T COG1727 91 AREKIEEAGGECLTLEELAERNPK 114 (122)
T ss_pred HHHHHHHcCCeEeeHHHHHHHCCC
Confidence 357899999999999999999994
No 15
>PF06129 Chordopox_G3: Chordopoxvirus G3 protein; InterPro: IPR010367 This family consists of several poxvirus specific G3 proteins. The function of this family is unknown.
Probab=22.78 E-value=51 Score=25.83 Aligned_cols=14 Identities=57% Similarity=0.755 Sum_probs=11.4
Q ss_pred eEEEEEecCCcccc
Q psy10335 79 GIWLRYDSRSGTHN 92 (177)
Q Consensus 79 gIwlrY~SrsgthN 92 (177)
-+|+.|||++|+.-
T Consensus 67 ~v~l~Yds~~~~Vt 80 (109)
T PF06129_consen 67 QVILYYDSRSGTVT 80 (109)
T ss_pred ceEEEEccCCCeEE
Confidence 47899999999653
No 16
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=20.85 E-value=74 Score=22.92 Aligned_cols=40 Identities=18% Similarity=0.275 Sum_probs=27.1
Q ss_pred EEEEEecCCccccceeEeeccChhhHHHHHHHHhcccccccCCce
Q psy10335 80 IWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRARAHSI 124 (177)
Q Consensus 80 IwlrY~SrsgthNmyKEyRdlt~~gAV~q~Y~dmgsRHrar~~sI 124 (177)
+-+|.+|+.|++-. +++..+.+.++|+..........+++
T Consensus 5 milRvrS~dG~~Ri-----e~~~~~t~~~L~~kI~~~l~~~~~~~ 44 (80)
T PF11543_consen 5 MILRVRSKDGMKRI-----EVSPSSTLSDLKEKISEQLSIPDSSQ 44 (80)
T ss_dssp -EEEEE-SSEEEEE-----EE-TTSBHHHHHHHHHHHS---TTT-
T ss_pred EEEEEECCCCCEEE-----EcCCcccHHHHHHHHHHHcCCCCcce
Confidence 56899999999875 46778889999998888877765553
Done!