Query psy10335
Match_columns 177
No_of_seqs 148 out of 253
Neff 4.2
Searched_HMMs 29240
Date Fri Aug 16 15:22:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10335.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10335hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5e_S L18A, 60S ribosomal pro 100.0 3E-101 9E-106 629.6 15.0 170 5-176 2-172 (172)
2 4a18_X RPL18A, 60S ribosomal p 100.0 9E-100 3E-104 627.5 15.6 172 4-175 15-189 (189)
3 3iz5_S 60S ribosomal protein L 100.0 3E-100 1E-104 625.7 10.9 172 5-176 4-178 (178)
4 3j21_l 50S ribosomal protein L 100.0 4.6E-37 1.6E-41 222.6 7.8 74 74-147 2-75 (77)
5 4adx_G RPLX; ribosome, protein 100.0 1.7E-34 5.9E-39 209.5 7.2 75 73-147 3-77 (78)
6 4adx_G RPLX; ribosome, protein 56.5 16 0.00056 25.7 4.4 63 4-69 2-64 (78)
7 2j8a_A Histone-lysine N-methyl 33.7 22 0.00076 27.6 2.3 35 56-91 28-62 (136)
8 3j21_l 50S ribosomal protein L 32.4 54 0.0018 22.9 4.0 62 6-70 2-63 (77)
9 2nr7_A Secretion activator pro 25.8 19 0.00065 29.4 0.7 43 70-112 26-74 (195)
10 2vy4_A U11/U12 small nuclear r 24.5 39 0.0013 20.4 1.8 26 30-55 7-32 (37)
11 2kfd_A PRE-mRNA-processing pro 21.6 29 0.00099 24.3 0.9 21 93-113 45-66 (69)
No 1
>3u5e_S L18A, 60S ribosomal protein L20-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_S 4b6a_S
Probab=100.00 E-value=2.6e-101 Score=629.59 Aligned_cols=170 Identities=54% Similarity=0.970 Sum_probs=167.7
Q ss_pred cceeEEEEEeecCCCCCCCCCCcEEEEeecCCceEEehhhHHHHHHhhhcccccccEEEEEEeccCCCceeeeeeEEEEE
Q psy10335 5 GLLKEYEVIGRKLPTEKEKITPLYKMRIFAPDDIVAKSRFWYFLRQLKKFKKSTGEIVSLKLISEKSPTKIKNFGIWLRY 84 (177)
Q Consensus 5 ~~l~eY~Vvgr~lPt~k~p~P~ly~m~iFA~n~vvAKSrFWyfl~~l~K~Kks~GeIv~~~~i~Ek~p~~VkNfgIwlrY 84 (177)
|+|+||+||||+||||++|+|+||+|+|||||+|||||||||||+||+|||||+||||+|++|+|++|++||||||||||
T Consensus 2 ~~l~eY~VvGr~lPt~k~~~p~lyrm~iFApn~vvAKSrFWyfl~~l~K~Kks~GeIv~~~~i~Ek~p~~VKNfGIwlrY 81 (172)
T 3u5e_S 2 AHFKEYQVIGRRLPTESVPEPKLFRMRIFASNEVIAKSRYWYFLQKLHKVKKASGEIVSINQINEAHPTKVKNFGVWVRY 81 (172)
T ss_dssp CSCEEEEEEECCCCBTTBCSCCCEEEEEEESSHHHHHHHHHHHHTTTSSCCGGGCCEEEEEECCCSSTTSCEEEEEEEEE
T ss_pred CccEEEEEEEecCCCCCCCCCCeEEEEecCCCcEEEeehHHHHHHHHhhhhcccceEEEEEEEccCCCceeEEeeEEEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCccccceeEeeccChhhHHHHHHHHhcccccccCCceeEEEeEEe-cCCcccChhhhhhhcCCCcCcCccccccccC
Q psy10335 85 DSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRARAHSIQIIKLEVV-KASACRRPLVKQFHDSRIRFPLPKRIQHVNR 163 (177)
Q Consensus 85 ~SrsgthNmyKEyRdlt~~gAV~q~Y~dmgsRHrar~~sIqIikVeeI-~~~~~rrp~vkQf~~~kikFPl~~r~~~~~~ 163 (177)
|||||||||||||||||++|||+|||+|||||||||+++||||+|+|| +++||+||+|+||||++|+||||||+++.
T Consensus 82 dSrsgtHNmYKEyRdlt~~gAV~q~Y~dMgsRHRar~~sIqIikVeeI~~~~~~rrp~vkQf~~skikFPl~hrv~~~-- 159 (172)
T 3u5e_S 82 DSRSGTHNMYKEIRDVSRVAAVETLYQDMAARHRARFRSIHILKVAEIEKTADVKRQYVKQFLTKDLKFPLPHRVQKS-- 159 (172)
T ss_dssp ECSSCEEEEEEEEEESSHHHHHHHHHHHHHHHHCCCGGGEEEEEEEECCSTTSCCCHHHHGGGSTTCEEECCSCCCCC--
T ss_pred cccCCccccchhhhhccHHHHHHHHHHHhhhhhcccccceEEeeeEEEcchhcCCChhhHhhhcCCCccccccccccC--
Confidence 999999999999999999999999999999999999999999999999 89999999999999999999999999985
Q ss_pred CCceeccCCcccC
Q psy10335 164 MNLFSSRRPKTYF 176 (177)
Q Consensus 164 ~~~F~~~rP~t~~ 176 (177)
+++|+++||+|||
T Consensus 160 ~~~F~~~rP~t~~ 172 (172)
T 3u5e_S 160 TKTFSYKRPSTFY 172 (172)
T ss_dssp SSSCBSSCCCCCC
T ss_pred CCceeccCCCCCC
Confidence 4899999999997
No 2
>4a18_X RPL18A, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_X 4a1b_X 4a1d_X
Probab=100.00 E-value=9.2e-100 Score=627.52 Aligned_cols=172 Identities=38% Similarity=0.720 Sum_probs=168.5
Q ss_pred ccceeEEEEEeecCCCCCCCCCCcEEEEeecCCceEEehhhHHHHHHhhhcccccccEEEEEEeccCCCceeeeeeEEEE
Q psy10335 4 KGLLKEYEVIGRKLPTEKEKITPLYKMRIFAPDDIVAKSRFWYFLRQLKKFKKSTGEIVSLKLISEKSPTKIKNFGIWLR 83 (177)
Q Consensus 4 ~~~l~eY~Vvgr~lPt~k~p~P~ly~m~iFA~n~vvAKSrFWyfl~~l~K~Kks~GeIv~~~~i~Ek~p~~VkNfgIwlr 83 (177)
+|.|+||+||||+||||++|+|+||+|+|||||+|||||||||||+||+|||||+||||+|++|+|++|++|||||||||
T Consensus 15 ~~~l~eY~VvGr~lPt~k~p~P~lyrM~iFApn~VvAKSrFWyfl~~l~K~Kks~GeIv~~~~i~Ek~p~~VKNfGIwlr 94 (189)
T 4a18_X 15 QMKVRQYVVSAARLPIEQGTKPEILQMRVFARDEVHAKTKFWYNMRKLNKIKRSQGRILSVNEIYEKSLNTVKTYGIVLK 94 (189)
T ss_dssp SCCCEEEEEEEEETTCCTTSCCCEEEEEEEESSHHHHHHHHHHHHHHHSSCCSTTEEEEEEEEECCSCTTSCEEEEEEEE
T ss_pred ccceEEEEEEEecCCCCCCCCCCeEEEEecCCCcEEEeehHHHHHHHHHhhhhccceEEEEEEEccCCCceeEEeeEEEE
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCccccceeEeeccChhhHHHHHHHHhcccccccCCceeEEEeEEecCCcccChhhhhhhcCCCcCcCcccccccc-
Q psy10335 84 YDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRARAHSIQIIKLEVVKASACRRPLVKQFHDSRIRFPLPKRIQHVN- 162 (177)
Q Consensus 84 Y~SrsgthNmyKEyRdlt~~gAV~q~Y~dmgsRHrar~~sIqIikVeeI~~~~~rrp~vkQf~~~kikFPl~~r~~~~~- 162 (177)
||||||||||||||||+|++|||+|||+|||||||||+++||||+|+||+++||+||+|+||||++|+||||||+++.+
T Consensus 95 YdSRsgtHNmYKEYRdlt~~gAV~q~Y~dMgsRHRar~~sIqIikVeeI~~~~~rrp~vkQf~~skikFPl~hrv~~~~~ 174 (189)
T 4a18_X 95 YQSRTAIHNMYKEYRDVSLNGAVSQLIQDMAGNHRAQPDTIQIIRTATLEPKDIKRPATLAMRNAALKFPIVKTIHRPSE 174 (189)
T ss_dssp EECSSCEEEEEEEEEESCHHHHHHHHHHHHHHTTCCCGGGCEEEEEEECCGGGCCCHHHHTTCCSCCEEECCCCCCCCSS
T ss_pred EcccCCccccchhhhhccHHHHHHHHHHHhhhhhcccccceEEEEEEEECHHHccCHHHHHHhccCCccccceeeccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999854
Q ss_pred --CCCceeccCCccc
Q psy10335 163 --RMNLFSSRRPKTY 175 (177)
Q Consensus 163 --~~~~F~~~rP~t~ 175 (177)
++++|+++||+||
T Consensus 175 ~~~~~~F~~~rP~t~ 189 (189)
T 4a18_X 175 KKYRTVYKATRPTTF 189 (189)
T ss_dssp GGGCCSSCSSCCCCC
T ss_pred ccccceeeccCCCCC
Confidence 4789999999997
No 3
>3iz5_S 60S ribosomal protein L18A (L18AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_S 3izc_S 3izs_S
Probab=100.00 E-value=3.1e-100 Score=625.74 Aligned_cols=172 Identities=48% Similarity=0.870 Sum_probs=158.5
Q ss_pred cceeEEEEEeecCCCCCCCCCCcEEEEeecCCceEEehhhHHHHHHhhhcccccccEEEEEEeccCCCceeeeeeEEEEE
Q psy10335 5 GLLKEYEVIGRKLPTEKEKITPLYKMRIFAPDDIVAKSRFWYFLRQLKKFKKSTGEIVSLKLISEKSPTKIKNFGIWLRY 84 (177)
Q Consensus 5 ~~l~eY~Vvgr~lPt~k~p~P~ly~m~iFA~n~vvAKSrFWyfl~~l~K~Kks~GeIv~~~~i~Ek~p~~VkNfgIwlrY 84 (177)
..|+||+||||+||||++|+|+||+|+|||||+|||||||||||+||+|||||+||||+|++|+|++|++||||||||||
T Consensus 4 ~~l~eY~VvGr~lPt~k~p~p~lyrm~iFApn~VvAKSrFWyfl~~l~K~Kks~GeIv~~~~i~Ek~p~~VKNfGIwlrY 83 (178)
T 3iz5_S 4 FRFHQYQVVGRGLPTPTDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQILAINEIFEKNPTTIKNYGIWLRY 83 (178)
T ss_dssp CSCEEEEEEECCCCCSSSCCCCCBCCCEEESSHHHHHHHHHHHHHHTTCCCSTTCCEEEEECCCSSSSSCCCCCEEEEEE
T ss_pred ceeEEEEEEEecCCCCCCCCCceEEEEeecCCeEEEeehHHHHHHHHhhhhhccceEEEEEEEccCCCceeEEeeEEEEE
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCccccceeEeeccChhhHHHHHHHHhcccccccCCceeEEEeEEecCCcccChhhhhhhcCCCcCcCccccccc---
Q psy10335 85 DSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRARAHSIQIIKLEVVKASACRRPLVKQFHDSRIRFPLPKRIQHV--- 161 (177)
Q Consensus 85 ~SrsgthNmyKEyRdlt~~gAV~q~Y~dmgsRHrar~~sIqIikVeeI~~~~~rrp~vkQf~~~kikFPl~~r~~~~--- 161 (177)
|||||||||||||||+|++|||+|||+|||||||||+++||||+|+||+++||+||+|+||||++|+||||||+++.
T Consensus 84 dSrsgtHNmyKEyRdlt~~gAV~q~Y~dMgsRHRar~~sIqIikVeeI~~~~~rrp~ikQf~~skikFPl~hrv~~~~~~ 163 (178)
T 3iz5_S 84 QSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATVHFKLCKRDNTKQFHKSDIKFPLVYRKVRPPTR 163 (178)
T ss_dssp ECSSSEEEEEEECCCSCHHHHHHHHHHHHHTTSCCCTTCCCEEEEECCCTTTCCSCHHHHHHHHHHSSSSSSSSSSSGGG
T ss_pred cccCCcccchhhhhhccHHHHHHHHHHHhhhhhcccccceEEEeEEEEcHHHcCCHHHHHhhcCCCccccceeecccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred cCCCceeccCCcccC
Q psy10335 162 NRMNLFSSRRPKTYF 176 (177)
Q Consensus 162 ~~~~~F~~~rP~t~~ 176 (177)
+++++|+++||+||+
T Consensus 164 ~~~~~F~~~rP~t~~ 178 (178)
T 3iz5_S 164 KLKTTFKASRPNLFM 178 (178)
T ss_dssp SSCC-----------
T ss_pred cccCeEeccCCccCC
Confidence 678999999999985
No 4
>3j21_l 50S ribosomal protein LX; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=4.6e-37 Score=222.57 Aligned_cols=74 Identities=18% Similarity=0.406 Sum_probs=72.4
Q ss_pred eeeeeeEEEEEecCCccccceeEeeccChhhHHHHHHHHhcccccccCCceeEEEeEEecCCcccChhhhhhhc
Q psy10335 74 KIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRARAHSIQIIKLEVVKASACRRPLVKQFHD 147 (177)
Q Consensus 74 ~VkNfgIwlrY~SrsgthNmyKEyRdlt~~gAV~q~Y~dmgsRHrar~~sIqIikVeeI~~~~~rrp~vkQf~~ 147 (177)
.|||||||++|+||+|+|||||||||++++|||+|||+||||||++|+++|||++|+||+++||+||+|+||+.
T Consensus 2 ~vK~f~V~g~y~~r~~~~~f~KE~ra~~~~~Ave~~Yse~gsrHr~kr~~I~I~~V~eI~~~e~~~~~vkql~~ 75 (77)
T 3j21_l 2 KVKVFRVHGYFEKNGRKFKFTKEYRGIKEEDVKELVYSDIGSKHKVKRNKIFIKEIKEIRPEEAEDIVVRRLSL 75 (77)
T ss_dssp CCCEEEEEEEEEETTEEEEEEEEEECSSHHHHHHHHHHHHHHHTTCCTTSEEEEEEEEECTTCCSSHHHHHHTT
T ss_pred ceEEEEEEEEEEcCCCeEeEEEEEecCCHhHHHHHHHHHHhhhhCCCccceEEEEEEEeCHHHcCCHHHHHHHh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999973
No 5
>4adx_G RPLX; ribosome, protein synthesis; 6.60A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2jxt_A
Probab=100.00 E-value=1.7e-34 Score=209.53 Aligned_cols=75 Identities=17% Similarity=0.322 Sum_probs=73.0
Q ss_pred ceeeeeeEEEEEecCCccccceeEeeccChhhHHHHHHHHhcccccccCCceeEEEeEEecCCcccChhhhhhhc
Q psy10335 73 TKIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRARAHSIQIIKLEVVKASACRRPLVKQFHD 147 (177)
Q Consensus 73 ~~VkNfgIwlrY~SrsgthNmyKEyRdlt~~gAV~q~Y~dmgsRHrar~~sIqIikVeeI~~~~~rrp~vkQf~~ 147 (177)
..|||||||++|+|++|+|||||||||++++|||++||+||||||++++++|+|++|+||+++||+||.|+||+.
T Consensus 3 ~~vK~f~V~g~~~~r~~~~~f~KE~ra~~~~~Ave~~Yse~gSrHrvkr~~I~I~~V~eI~~~e~~~~~ikql~~ 77 (78)
T 4adx_G 3 MKTKIFRVKGKFLMGDKLQPFTKELNAIREEEIYERLYSEFGSKHRVPRSKVKIEEIEEISPEEVQDPVVKALVQ 77 (78)
T ss_pred ceeEEEEEEEEEEcCCCeEEEEEEEecCCHHHHHHHHHHHHHhhcCCCccceEEEEEEEeCHHHcCCHHHHHHhc
Confidence 369999999999999999999999999999999999999999999999999999999999999999999999974
No 6
>4adx_G RPLX; ribosome, protein synthesis; 6.60A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2jxt_A
Probab=56.48 E-value=16 Score=25.69 Aligned_cols=63 Identities=17% Similarity=0.150 Sum_probs=53.1
Q ss_pred ccceeEEEEEeecCCCCCCCCCCcEEEEeecCCceEEehhhHHHHHHhhhcccccccEEEEEEecc
Q psy10335 4 KGLLKEYEVIGRKLPTEKEKITPLYKMRIFAPDDIVAKSRFWYFLRQLKKFKKSTGEIVSLKLISE 69 (177)
Q Consensus 4 ~~~l~eY~Vvgr~lPt~k~p~P~ly~m~iFA~n~vvAKSrFWyfl~~l~K~Kks~GeIv~~~~i~E 69 (177)
++..+-|.|.|+-.-.. . +.-|.=.+=|.|+..|..+-.--|---+++|.++=.|+.+.+|.+
T Consensus 2 ~~~vK~f~V~g~~~~r~-~--~~~f~KE~ra~~~~~Ave~~Yse~gSrHrvkr~~I~I~~V~eI~~ 64 (78)
T 4adx_G 2 KMKTKIFRVKGKFLMGD-K--LQPFTKELNAIREEEIYERLYSEFGSKHRVPRSKVKIEEIEEISP 64 (78)
T ss_pred CceeEEEEEEEEEEcCC-C--eEEEEEEEecCCHHHHHHHHHHHHHhhcCCCccceEEEEEEEeCH
Confidence 35789999999986432 2 455667788999999999999999999999999999999999954
No 7
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=33.66 E-value=22 Score=27.63 Aligned_cols=35 Identities=20% Similarity=0.307 Sum_probs=25.8
Q ss_pred cccccEEEEEEeccCCCceeeeeeEEEEEecCCccc
Q psy10335 56 KSTGEIVSLKLISEKSPTKIKNFGIWLRYDSRSGTH 91 (177)
Q Consensus 56 ks~GeIv~~~~i~Ek~p~~VkNfgIwlrY~Srsgth 91 (177)
.+=|||.+|+-+.++....-++|| +.+|.+++|..
T Consensus 28 s~fGeV~~~~li~Dp~Tg~slGfg-fVef~d~~g~~ 62 (136)
T 2j8a_A 28 KKYGEISHFEAFNDPNSALPLHVY-LIKYASSDGKI 62 (136)
T ss_dssp HTTSCCSEEEEEECTTTCCEEEEE-EEECC------
T ss_pred HhcCCeEEEEEEecCCCCceeeEE-EEEECCCCCCc
Confidence 467999999999999999999999 56787766654
No 8
>3j21_l 50S ribosomal protein LX; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=32.45 E-value=54 Score=22.92 Aligned_cols=62 Identities=15% Similarity=0.043 Sum_probs=50.2
Q ss_pred ceeEEEEEeecCCCCCCCCCCcEEEEeecCCceEEehhhHHHHHHhhhcccccccEEEEEEeccC
Q psy10335 6 LLKEYEVIGRKLPTEKEKITPLYKMRIFAPDDIVAKSRFWYFLRQLKKFKKSTGEIVSLKLISEK 70 (177)
Q Consensus 6 ~l~eY~Vvgr~lPt~k~p~P~ly~m~iFA~n~vvAKSrFWyfl~~l~K~Kks~GeIv~~~~i~Ek 70 (177)
..+.|.|.|+-.... . +.=|.=.+=|.|+-.|..+-.--|---+++|.++=.|+.+.+|.+.
T Consensus 2 ~vK~f~V~g~y~~r~-~--~~~f~KE~ra~~~~~Ave~~Yse~gsrHr~kr~~I~I~~V~eI~~~ 63 (77)
T 3j21_l 2 KVKVFRVHGYFEKNG-R--KFKFTKEYRGIKEEDVKELVYSDIGSKHKVKRNKIFIKEIKEIRPE 63 (77)
T ss_dssp CCCEEEEEEEEEETT-E--EEEEEEEEECSSHHHHHHHHHHHHHHHTTCCTTSEEEEEEEEECTT
T ss_pred ceEEEEEEEEEEcCC-C--eEeEEEEEecCCHhHHHHHHHHHHhhhhCCCccceEEEEEEEeCHH
Confidence 578999999975432 2 2334445669999999999999999999999999999999999543
No 9
>2nr7_A Secretion activator protein, putative; APCC85792, porphyromonas gingivalis W83 structural genomics, PSI-2, protein structure initiative; 1.30A {Porphyromonas gingivalis} SCOP: d.2.1.9
Probab=25.79 E-value=19 Score=29.35 Aligned_cols=43 Identities=12% Similarity=0.122 Sum_probs=30.1
Q ss_pred CCCceeeeeeEEEEEecCCcc-----cc-ceeEeeccChhhHHHHHHHH
Q psy10335 70 KSPTKIKNFGIWLRYDSRSGT-----HN-MYREYRDLSVSGAVTQCYRD 112 (177)
Q Consensus 70 k~p~~VkNfgIwlrY~Srsgt-----hN-myKEyRdlt~~gAV~q~Y~d 112 (177)
..|.-.=||||-.+.-++.|+ -. -....|+||.++|++.+|..
T Consensus 26 ~D~GG~T~~GIT~~t~~~~g~~~~~~g~~~~~dv~~Lt~~~a~~~Iy~~ 74 (195)
T 2nr7_A 26 ADAGGATNKGVTIATWKRVGYDKDGDGDIDVEDLKLLTDDDVLNRVLKP 74 (195)
T ss_dssp GGGTCCEEECCCCCCTTTSSCBCTTSTTCCCSCGGGSCHHHHHHHTHHH
T ss_pred CCCCCCcchhhhHHHHHhcCCccccCCCCCHHHHHhCCHHHHHHHHHHH
Confidence 445667799999886555553 22 22347999999999977753
No 10
>2vy4_A U11/U12 small nuclear ribonucleoprotein 48 kDa protein; splicing, mRNA processing, alternative splicing, transcription, nucleus, spliceosome; NMR {Homo sapiens} SCOP: g.37.1.7 PDB: 2vy5_A
Probab=24.50 E-value=39 Score=20.35 Aligned_cols=26 Identities=12% Similarity=0.106 Sum_probs=20.7
Q ss_pred EEeecCCceEEehhhHHHHHHhhhcc
Q psy10335 30 MRIFAPDDIVAKSRFWYFLRQLKKFK 55 (177)
Q Consensus 30 m~iFA~n~vvAKSrFWyfl~~l~K~K 55 (177)
..=|.|||.|..+||++-|.+=++-+
T Consensus 7 ~CPyd~~H~i~~~~l~~Hl~kC~~r~ 32 (37)
T 2vy4_A 7 ICPYDSNHHMPKSSLAKHMASCRLRK 32 (37)
T ss_dssp ECTTTSSCEECGGGHHHHHHHHHHHH
T ss_pred ECCCCCCeEeCHHHHHHHHHHHhhhh
Confidence 34478999999999999998765544
No 11
>2kfd_A PRE-mRNA-processing protein PRP40; FF domain, mRNA splicing, nucleus, phosphoprotein, ribonucleoprotein, nuclear protein; NMR {Saccharomyces cerevisiae}
Probab=21.64 E-value=29 Score=24.27 Aligned_cols=21 Identities=24% Similarity=0.343 Sum_probs=17.2
Q ss_pred ceeEeeccC-hhhHHHHHHHHh
Q psy10335 93 MYREYRDLS-VSGAVTQCYRDM 113 (177)
Q Consensus 93 myKEyRdlt-~~gAV~q~Y~dm 113 (177)
-|.||+|++ +.....|+|+|+
T Consensus 45 ~~~Ey~~l~~E~~v~~qif~~F 66 (69)
T 2kfd_A 45 ESLEYKALGDEDNIRRQIFEDF 66 (69)
T ss_dssp TSTTSGGGTTSHHHHHHHHHHH
T ss_pred cCHHHHHhhccHHHHHHHHHhc
Confidence 478999995 458889999986
Done!