RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10335
         (177 letters)



>d2jxta1 d.355.1.1 (A:1-78) Ribosomal protein LX, RplX
           {Methanobacterium thermoautotrophicum [TaxId: 145262]}
          Length = 78

 Score = 95.2 bits (237), Expect = 5e-27
 Identities = 13/73 (17%), Positives = 29/73 (39%)

Query: 73  TKIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRARAHSIQIIKLEVV 132
            K K F +  ++          +E   +       + Y + G++HR     ++I ++E +
Sbjct: 3   MKTKIFRVKGKFLMGDKLQPFTKELNAIREEEIYERLYSEFGSKHRVPRSKVKIEEIEEI 62

Query: 133 KASACRRPLVKQF 145
                + P+VK  
Sbjct: 63  SPEEVQDPVVKAL 75


>d1t71a_ d.159.1.9 (A:) Hypothetical protein MPN349 {Mycoplasma
          pneumoniae [TaxId: 2104]}
          Length = 281

 Score = 24.5 bits (53), Expect = 8.0
 Identities = 4/30 (13%), Positives = 10/30 (33%)

Query: 27 LYKMRIFAPDDIVAKSRFWYFLRQLKKFKK 56
          +  ++     D+  K+        L + K 
Sbjct: 2  MNSIKFIFLGDVYGKAGRNIIKNNLAQLKS 31


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.137    0.408 

Gapped
Lambda     K      H
   0.267   0.0666    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 673,656
Number of extensions: 30973
Number of successful extensions: 92
Number of sequences better than 10.0: 1
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 5
Length of query: 177
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 97
Effective length of database: 1,309,196
Effective search space: 126992012
Effective search space used: 126992012
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.2 bits)