BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10337
(87 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UDY|A Chain A, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|B Chain B, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|C Chain C, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|D Chain D, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
Length = 396
Score = 79.7 bits (195), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 36/46 (78%), Positives = 42/46 (91%)
Query: 40 IVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIER 85
+ VFGGNGFN++YPVEKLMRDAKIYQIYEGTAQIQR+I++R I R
Sbjct: 348 VQVFGGNGFNTEYPVEKLMRDAKIYQIYEGTAQIQRIIIAREHIGR 393
Score = 75.9 bits (185), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 37/38 (97%)
Query: 5 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVV 42
VFGGNGFN++YPVEKLMRDAKIYQIYEGTAQIQR+I+
Sbjct: 350 VFGGNGFNTEYPVEKLMRDAKIYQIYEGTAQIQRIIIA 387
>pdb|3MDD|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDD|B Chain B, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDE|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDE|B Chain B, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
Length = 385
Score = 79.7 bits (195), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 36/46 (78%), Positives = 42/46 (91%)
Query: 40 IVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIER 85
+ VFGGNGFN++YPVEKLMRDAKIYQIYEGTAQIQR+I++R I R
Sbjct: 338 VQVFGGNGFNTEYPVEKLMRDAKIYQIYEGTAQIQRIIIAREHIGR 383
Score = 75.9 bits (185), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 37/38 (97%)
Query: 5 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVV 42
VFGGNGFN++YPVEKLMRDAKIYQIYEGTAQIQR+I+
Sbjct: 340 VFGGNGFNTEYPVEKLMRDAKIYQIYEGTAQIQRIIIA 377
>pdb|2A1T|A Chain A, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|B Chain B, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|C Chain C, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|D Chain D, Structure Of The Human Mcad:etf E165betaa Complex
Length = 421
Score = 77.8 bits (190), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 34/46 (73%), Positives = 42/46 (91%)
Query: 40 IVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIER 85
+ + GGNGFN++YPVEKLMRDAKIYQIYEGT+QIQRLIV+R I++
Sbjct: 373 VQILGGNGFNTEYPVEKLMRDAKIYQIYEGTSQIQRLIVAREHIDK 418
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 32/38 (84%), Positives = 36/38 (94%)
Query: 5 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVV 42
+ GGNGFN++YPVEKLMRDAKIYQIYEGT+QIQRLIV
Sbjct: 375 ILGGNGFNTEYPVEKLMRDAKIYQIYEGTSQIQRLIVA 412
>pdb|1EGE|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1T9G|A Chain A, Structure Of The Human Mcad:etf Complex
pdb|1T9G|B Chain B, Structure Of The Human Mcad:etf Complex
pdb|1T9G|C Chain C, Structure Of The Human Mcad:etf Complex
pdb|1T9G|D Chain D, Structure Of The Human Mcad:etf Complex
Length = 396
Score = 77.8 bits (190), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 34/46 (73%), Positives = 42/46 (91%)
Query: 40 IVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIER 85
+ + GGNGFN++YPVEKLMRDAKIYQIYEGT+QIQRLIV+R I++
Sbjct: 348 VQILGGNGFNTEYPVEKLMRDAKIYQIYEGTSQIQRLIVAREHIDK 393
Score = 73.6 bits (179), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 32/38 (84%), Positives = 36/38 (94%)
Query: 5 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVV 42
+ GGNGFN++YPVEKLMRDAKIYQIYEGT+QIQRLIV
Sbjct: 350 ILGGNGFNTEYPVEKLMRDAKIYQIYEGTSQIQRLIVA 387
>pdb|1EGD|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGC|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
Length = 396
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 33/46 (71%), Positives = 41/46 (89%)
Query: 40 IVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIER 85
+ + GGNGFN++YPVEKLMRDAKIYQIY GT+QIQRLIV+R I++
Sbjct: 348 VQILGGNGFNTEYPVEKLMRDAKIYQIYGGTSQIQRLIVAREHIDK 393
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/38 (81%), Positives = 35/38 (92%)
Query: 5 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVV 42
+ GGNGFN++YPVEKLMRDAKIYQIY GT+QIQRLIV
Sbjct: 350 ILGGNGFNTEYPVEKLMRDAKIYQIYGGTSQIQRLIVA 387
>pdb|3PFD|A Chain A, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|B Chain B, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|C Chain C, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|D Chain D, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
Length = 393
Score = 66.6 bits (161), Expect = 3e-12, Method: Composition-based stats.
Identities = 27/44 (61%), Positives = 38/44 (86%)
Query: 40 IVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 83
+ +FGG G+ D+PVE++MRDAKI QIYEGT QIQR+++SRA++
Sbjct: 349 VQLFGGYGYTQDFPVERMMRDAKITQIYEGTNQIQRVVMSRALL 392
Score = 60.1 bits (144), Expect = 3e-10, Method: Composition-based stats.
Identities = 24/37 (64%), Positives = 32/37 (86%)
Query: 5 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
+FGG G+ D+PVE++MRDAKI QIYEGT QIQR+++
Sbjct: 351 LFGGYGYTQDFPVERMMRDAKITQIYEGTNQIQRVVM 387
>pdb|3NF4|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Flavin Adenine
Dinucleotide
pdb|3NF4|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Flavin Adenine
Dinucleotide
Length = 387
Score = 58.5 bits (140), Expect = 8e-10, Method: Composition-based stats.
Identities = 25/43 (58%), Positives = 34/43 (79%)
Query: 40 IVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAI 82
+ VFGG G+ DY VE+ MR+AKI QI+EGT QIQRL+++R +
Sbjct: 343 VQVFGGVGYTRDYRVERYMREAKIMQIFEGTNQIQRLVIARGL 385
Score = 56.2 bits (134), Expect = 4e-09, Method: Composition-based stats.
Identities = 25/40 (62%), Positives = 31/40 (77%)
Query: 5 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVVFG 44
VFGG G+ DY VE+ MR+AKI QI+EGT QIQRL++ G
Sbjct: 345 VFGGVGYTRDYRVERYMREAKIMQIFEGTNQIQRLVIARG 384
>pdb|1UKW|A Chain A, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase
From Thermus Thermophilus Hb8
pdb|1UKW|B Chain B, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase
From Thermus Thermophilus Hb8
Length = 379
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 35/44 (79%)
Query: 40 IVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 83
I + GG G+ ++PVEKL+RD K+ QIYEGT +IQRLI++R I+
Sbjct: 334 IQIHGGYGYVREFPVEKLLRDVKLNQIYEGTNEIQRLIIARHIL 377
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 30/37 (81%)
Query: 5 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
+ GG G+ ++PVEKL+RD K+ QIYEGT +IQRLI+
Sbjct: 336 IHGGYGYVREFPVEKLLRDVKLNQIYEGTNEIQRLII 372
>pdb|1IVH|A Chain A, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|B Chain B, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|C Chain C, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|D Chain D, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
Length = 394
Score = 54.7 bits (130), Expect = 1e-08, Method: Composition-based stats.
Identities = 21/47 (44%), Positives = 37/47 (78%), Gaps = 3/47 (6%)
Query: 6 FGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDY 52
FGGNG+ +D+P+ + +RDAK+Y+I GT++++RL++ G FN+D+
Sbjct: 350 FGGNGYINDFPMGRFLRDAKLYEIGAGTSEVRRLVI---GRAFNADF 393
Score = 53.1 bits (126), Expect = 4e-08, Method: Composition-based stats.
Identities = 20/42 (47%), Positives = 34/42 (80%)
Query: 40 IVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRA 81
I FGGNG+ +D+P+ + +RDAK+Y+I GT++++RL++ RA
Sbjct: 347 IQCFGGNGYINDFPMGRFLRDAKLYEIGAGTSEVRRLVIGRA 388
>pdb|2DVL|A Chain A, Crystal Structure Of Project Tt0160 From Thermus
Thermophilus Hb8
pdb|2DVL|B Chain B, Crystal Structure Of Project Tt0160 From Thermus
Thermophilus Hb8
Length = 372
Score = 54.7 bits (130), Expect = 1e-08, Method: Composition-based stats.
Identities = 22/43 (51%), Positives = 34/43 (79%)
Query: 40 IVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAI 82
+ V GG G++ DY VE+ RDAK+ +IYEGT++IQRL+++R +
Sbjct: 328 VQVLGGYGYHRDYRVERYYRDAKVTEIYEGTSEIQRLVIAREL 370
Score = 51.6 bits (122), Expect = 1e-07, Method: Composition-based stats.
Identities = 21/37 (56%), Positives = 30/37 (81%)
Query: 5 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
V GG G++ DY VE+ RDAK+ +IYEGT++IQRL++
Sbjct: 330 VLGGYGYHRDYRVERYYRDAKVTEIYEGTSEIQRLVI 366
>pdb|1JQI|A Chain A, Crystal Structure Of Rat Short Chain Acyl-Coa
Dehydrogenase Complexed With Acetoacetyl-Coa
pdb|1JQI|B Chain B, Crystal Structure Of Rat Short Chain Acyl-Coa
Dehydrogenase Complexed With Acetoacetyl-Coa
Length = 388
Score = 53.1 bits (126), Expect = 4e-08, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 39/64 (60%)
Query: 16 PVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR 75
P K AK+ TA + I + GG G+ ++ P E+ RDA+I +IYEGT++IQR
Sbjct: 316 PFTKESAMAKLAASEAATAISHQAIQILGGMGYVTEMPAERYYRDARITEIYEGTSEIQR 375
Query: 76 LIVS 79
L+++
Sbjct: 376 LVIA 379
Score = 48.9 bits (115), Expect = 8e-07, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 29/37 (78%)
Query: 5 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
+ GG G+ ++ P E+ RDA+I +IYEGT++IQRL++
Sbjct: 342 ILGGMGYVTEMPAERYYRDARITEIYEGTSEIQRLVI 378
>pdb|1BUC|A Chain A, Three-Dimensional Structure Of Butyryl-Coa Dehydrogenase
From Megasphaera Elsdenii
pdb|1BUC|B Chain B, Three-Dimensional Structure Of Butyryl-Coa Dehydrogenase
From Megasphaera Elsdenii
Length = 383
Score = 52.4 bits (124), Expect = 7e-08, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 33/44 (75%)
Query: 40 IVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 83
+ +FGG G++ +YPV + MRDAKI QIYEGT ++Q ++ A++
Sbjct: 339 VQIFGGYGYSEEYPVARHMRDAKITQIYEGTNEVQLMVTGGALL 382
Score = 50.4 bits (119), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/41 (56%), Positives = 32/41 (78%), Gaps = 2/41 (4%)
Query: 5 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVVFGG 45
+FGG G++ +YPV + MRDAKI QIYEGT ++Q ++V GG
Sbjct: 341 IFGGYGYSEEYPVARHMRDAKITQIYEGTNEVQ--LMVTGG 379
>pdb|2VIG|A Chain A, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|B Chain B, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|C Chain C, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|D Chain D, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|E Chain E, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|F Chain F, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|G Chain G, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|H Chain H, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
Length = 391
Score = 51.6 bits (122), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 37/56 (66%)
Query: 24 AKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVS 79
AK+ TA + I + GG G+ ++ P E+ RDA+I +IYEGT++IQRL+++
Sbjct: 320 AKLAASEAATAISHQAIQILGGMGYVTEMPAERHYRDARITEIYEGTSEIQRLVIA 375
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 29/37 (78%)
Query: 5 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
+ GG G+ ++ P E+ RDA+I +IYEGT++IQRL++
Sbjct: 338 ILGGMGYVTEMPAERHYRDARITEIYEGTSEIQRLVI 374
>pdb|1WS9|A Chain A, Crystal Structure Of Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|1WS9|B Chain B, Crystal Structure Of Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|2CX9|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|C Chain C, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|D Chain D, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2D29|A Chain A, Structural Study On Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|2D29|B Chain B, Structural Study On Project Id Tt0172 From Thermus
Thermophilus Hb8
Length = 387
Score = 50.8 bits (120), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 38/61 (62%)
Query: 24 AKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 83
AK++ I + GG G+ DYPVE+ RDA++ +I EGT++I +L+++R ++
Sbjct: 325 AKLFASEAAVKACDEAIQILGGYGYVKDYPVERYWRDARLTRIGEGTSEILKLVIARRLL 384
Query: 84 E 84
E
Sbjct: 385 E 385
Score = 43.9 bits (102), Expect = 2e-05, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 28/37 (75%)
Query: 5 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
+ GG G+ DYPVE+ RDA++ +I EGT++I +L++
Sbjct: 343 ILGGYGYVKDYPVERYWRDARLTRIGEGTSEILKLVI 379
>pdb|1RX0|A Chain A, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|B Chain B, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|C Chain C, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|D Chain D, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND
Length = 393
Score = 48.9 bits (115), Expect = 6e-07, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 42/61 (68%)
Query: 24 AKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 83
AK++ E A + + + GG G+ DY V++ +RD++++QI EG+ ++ R+++SR+++
Sbjct: 332 AKLFATDECFAICNQALQMHGGYGYLKDYAVQQYVRDSRVHQILEGSNEVMRILISRSLL 391
Query: 84 E 84
+
Sbjct: 392 Q 392
Score = 39.7 bits (91), Expect = 4e-04, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 27/35 (77%)
Query: 7 GGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
GG G+ DY V++ +RD++++QI EG+ ++ R+++
Sbjct: 352 GGYGYLKDYAVQQYVRDSRVHQILEGSNEVMRILI 386
>pdb|2Z1Q|A Chain A, Crystal Structure Of Acyl Coa Dehydrogenase
pdb|2Z1Q|B Chain B, Crystal Structure Of Acyl Coa Dehydrogenase
Length = 577
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 33/46 (71%)
Query: 40 IVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIER 85
+ + GG G++ +YP+E+ RDA+I +I+EGT +I RL++ ++ R
Sbjct: 370 VQIHGGYGYSQEYPIERAYRDARINRIFEGTNEINRLLIPGMLLRR 415
Score = 45.4 bits (106), Expect = 7e-06, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 29/37 (78%)
Query: 5 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
+ GG G++ +YP+E+ RDA+I +I+EGT +I RL++
Sbjct: 372 IHGGYGYSQEYPIERAYRDARINRIFEGTNEINRLLI 408
>pdb|2JIF|A Chain A, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|B Chain B, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|C Chain C, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|D Chain D, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
Length = 404
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 33/67 (49%)
Query: 16 PVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR 75
P K AK Y + I GG G+ DYPVEK RDAKI IYEG + IQ
Sbjct: 334 PFIKEASMAKYYASEIAGQTTSKCIEWMGGVGYTKDYPVEKYFRDAKIGTIYEGASNIQL 393
Query: 76 LIVSRAI 82
+++ I
Sbjct: 394 NTIAKHI 400
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 22/32 (68%)
Query: 6 FGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQ 37
GG G+ DYPVEK RDAKI IYEG + IQ
Sbjct: 361 MGGVGYTKDYPVEKYFRDAKIGTIYEGASNIQ 392
>pdb|3OWA|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|C Chain C, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|D Chain D, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
Length = 597
Score = 43.9 bits (102), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 31/46 (67%)
Query: 40 IVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIER 85
+ + GG GF ++Y +E+ RD++I +I+EGT +I RLIV + +
Sbjct: 380 VQIHGGYGFXAEYEIERXYRDSRINRIFEGTNEINRLIVPGTFLRK 425
Score = 43.9 bits (102), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 28/37 (75%)
Query: 5 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
+ GG GF ++Y +E+ RD++I +I+EGT +I RLIV
Sbjct: 382 IHGGYGFXAEYEIERXYRDSRINRIFEGTNEINRLIV 418
>pdb|3B96|A Chain A, Structural Basis For Substrate Fatty-Acyl Chain
Specificity: Crystal Structure Of Human Very-Long-Chain
Acyl-Coa Dehydrogenase
Length = 587
Score = 41.6 bits (96), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 12 NSDYPVEKLMRDAKIYQIYEGTAQ---IQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYE 68
N D +A I +I+ A I + GG GF + VE+++RD +I++I+E
Sbjct: 335 NMDQGATDFQIEAAISKIFGSEAAWKVTDECIQIMGGMGFMKEPGVERVLRDLRIFRIFE 394
Query: 69 GTAQIQRLIVS 79
GT I RL V+
Sbjct: 395 GTNDILRLFVA 405
Score = 41.6 bits (96), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 5 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVVFGG 45
+ GG GF + VE+++RD +I++I+EGT I RL V G
Sbjct: 368 IMGGMGFMKEPGVERVLRDLRIFRIFEGTNDILRLFVALQG 408
>pdb|2UXW|A Chain A, Crystal Structure Of Human Very Long Chain Acyl-coa
Dehydrogenase (acadvl)
Length = 607
Score = 41.6 bits (96), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 12 NSDYPVEKLMRDAKIYQIYEGTAQ---IQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYE 68
N D +A I +I+ A I + GG GF + VE+++RD +I++I+E
Sbjct: 355 NMDQGATDFQIEAAISKIFGSEAAWKVTDECIQIMGGMGFMKEPGVERVLRDLRIFRIFE 414
Query: 69 GTAQIQRLIVS 79
GT I RL V+
Sbjct: 415 GTNDILRLFVA 425
Score = 41.6 bits (96), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 5 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVVFGG 45
+ GG GF + VE+++RD +I++I+EGT I RL V G
Sbjct: 388 IMGGMGFMKEPGVERVLRDLRIFRIFEGTNDILRLFVALQG 428
>pdb|3MPI|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|B Chain B, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|C Chain C, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|D Chain D, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPJ|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|B Chain B, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|D Chain D, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|E Chain E, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|F Chain F, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|G Chain G, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Length = 397
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 26/38 (68%)
Query: 42 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVS 79
+ G G++++YPV + RDA Y + EG+A I ++I++
Sbjct: 341 ILGAYGYSTEYPVARFYRDAPTYYMVEGSANICKMIIA 378
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 25/39 (64%)
Query: 5 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVVF 43
+ G G++++YPV + RDA Y + EG+A I ++I+
Sbjct: 341 ILGAYGYSTEYPVARFYRDAPTYYMVEGSANICKMIIAL 379
>pdb|3EOM|A Chain A, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|B Chain B, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|C Chain C, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|D Chain D, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EON|A Chain A, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|B Chain B, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|C Chain C, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|D Chain D, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3II9|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
Length = 396
Score = 33.1 bits (74), Expect = 0.035, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 42 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRA 81
+ GGNG + ++ V + + + ++ YEGT I LI+ RA
Sbjct: 349 MLGGNGISDEFGVARHLVNLEVVNTYEGTHDIHALILGRA 388
Score = 30.0 bits (66), Expect = 0.31, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 1 MSHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
++ + GGNG + ++ V + + + ++ YEGT I LI+
Sbjct: 345 LARDMLGGNGISDEFGVARHLVNLEVVNTYEGTHDIHALIL 385
>pdb|3D6B|A Chain A, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|B Chain B, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|C Chain C, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|D Chain D, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
Length = 395
Score = 33.1 bits (74), Expect = 0.035, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 42 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRA 81
+ GGNG + ++ V + + + ++ YEGT I LI+ RA
Sbjct: 348 MLGGNGISDEFGVARHLVNLEVVNTYEGTHDIHALILGRA 387
Score = 30.0 bits (66), Expect = 0.31, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 1 MSHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
++ + GGNG + ++ V + + + ++ YEGT I LI+
Sbjct: 344 LARDMLGGNGISDEFGVARHLVNLEVVNTYEGTHDIHALIL 384
>pdb|1SIR|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa
Dehydrogenase
pdb|2R0N|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa
Dehydrogenase On Proton Transfer To The Dienolate
Intermediate
Length = 394
Score = 33.1 bits (74), Expect = 0.036, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 42 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAI 82
+ GGNG + +Y V + + + YEGT I LI+ RAI
Sbjct: 344 MLGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHALILGRAI 384
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 5 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
+ GGNG + +Y V + + + YEGT I LI+
Sbjct: 344 MLGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHALIL 380
>pdb|3GQT|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GNC|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
Length = 399
Score = 33.1 bits (74), Expect = 0.036, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 42 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRA 81
+ GGNG + ++ V + + + ++ YEGT I LI+ RA
Sbjct: 352 MLGGNGISDEFGVARHLVNLEVVNTYEGTHDIHALILGRA 391
Score = 30.0 bits (66), Expect = 0.32, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 1 MSHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
++ + GGNG + ++ V + + + ++ YEGT I LI+
Sbjct: 348 LARDMLGGNGISDEFGVARHLVNLEVVNTYEGTHDIHALIL 388
>pdb|1SIQ|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa
Dehydrogenase
Length = 392
Score = 33.1 bits (74), Expect = 0.037, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 42 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAI 82
+ GGNG + +Y V + + + YEGT I LI+ RAI
Sbjct: 342 MLGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHALILGRAI 382
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 5 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
+ GGNG + +Y V + + + YEGT I LI+
Sbjct: 342 MLGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHALIL 378
>pdb|3SF6|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis
Length = 403
Score = 32.3 bits (72), Expect = 0.065, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 42 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAI 82
V G +G +YPV + + + YEGT+++ LI+ +A+
Sbjct: 356 VLGASGITGEYPVMRHANNLESVLTYEGTSEMHTLIIGQAL 396
Score = 30.0 bits (66), Expect = 0.38, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 5 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
V G +G +YPV + + + YEGT+++ LI+
Sbjct: 356 VLGASGITGEYPVMRHANNLESVLTYEGTSEMHTLII 392
>pdb|3R7K|A Chain A, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|B Chain B, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|C Chain C, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|D Chain D, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
Length = 403
Score = 32.0 bits (71), Expect = 0.079, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 30/59 (50%)
Query: 24 AKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAI 82
AK +Y + + +FGG G+ + +E+ RD +I I GT +I ++++ I
Sbjct: 343 AKNTAVYACDYVVNEAVQIFGGMGYMRESEIERHYRDCRILGIGGGTNEIMNEVIAKRI 401
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 5 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
+FGG G+ + +E+ RD +I I GT +I ++
Sbjct: 361 IFGGMGYMRESEIERHYRDCRILGIGGGTNEIMNEVI 397
>pdb|2PG0|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From
Geobacillus Kaustophilus
pdb|2PG0|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase From
Geobacillus Kaustophilus
Length = 385
Score = 32.0 bits (71), Expect = 0.086, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 44 GGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAI 82
GG G+ +Y + + RD + IY GT ++ + I++R +
Sbjct: 345 GGYGYMEEYEIARRYRDIPVSAIYAGTNEMMKTIIARQL 383
Score = 28.9 bits (63), Expect = 0.67, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 7 GGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
GG G+ +Y + + RD + IY GT ++ + I+
Sbjct: 345 GGYGYMEEYEIARRYRDIPVSAIYAGTNEMMKTII 379
>pdb|2R0M|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa
Dehydrogenase On Proton Transfer To The Dienolate
Intermediate
Length = 394
Score = 32.0 bits (71), Expect = 0.096, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 42 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAI 82
+ GGNG + +Y V + + + Y+GT I LI+ RAI
Sbjct: 344 MLGGNGISDEYHVIRHAMNLEAVNTYDGTHDIHALILGRAI 384
Score = 26.6 bits (57), Expect = 4.2, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 5 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
+ GGNG + +Y V + + + Y+GT I LI+
Sbjct: 344 MLGGNGISDEYHVIRHAMNLEAVNTYDGTHDIHALIL 380
>pdb|2IX5|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|B Chain B, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|C Chain C, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|D Chain D, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
Length = 436
Score = 31.6 bits (70), Expect = 0.12, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 42 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAI 82
+ GGNG +D+ V K D + YEGT I L+ R +
Sbjct: 382 LLGGNGILADFLVAKAFCDLEPIYTYEGTYDINTLVTGREV 422
Score = 28.5 bits (62), Expect = 0.88, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 5 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLI 40
+ GGNG +D+ V K D + YEGT I L+
Sbjct: 382 LLGGNGILADFLVAKAFCDLEPIYTYEGTYDINTLV 417
>pdb|2IX6|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|B Chain B, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|C Chain C, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|D Chain D, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|E Chain E, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|F Chain F, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
Length = 449
Score = 31.6 bits (70), Expect = 0.12, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 42 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAI 82
+ GGNG +D+ V K D + YEGT I L+ R +
Sbjct: 382 LLGGNGILADFLVAKAFCDLEPIYTYEGTYDINTLVTGREV 422
Score = 28.5 bits (62), Expect = 0.88, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 5 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLI 40
+ GGNG +D+ V K D + YEGT I L+
Sbjct: 382 LLGGNGILADFLVAKAFCDLEPIYTYEGTYDINTLV 417
>pdb|4HR3|A Chain A, Structure Of A Putative Acyl-Coa Dehydrogenase From
Mycobacterium Abscessus
Length = 415
Score = 30.4 bits (67), Expect = 0.27, Method: Composition-based stats.
Identities = 12/45 (26%), Positives = 26/45 (57%)
Query: 36 IQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSR 80
I I + GG G ++D+P+ +A+ ++ +G ++ R +V+R
Sbjct: 362 IDMAIQIHGGGGLSNDFPLAAAWVNARALRLADGPDEVHRGVVAR 406
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 10/41 (24%), Positives = 24/41 (58%)
Query: 1 MSHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
M+ + GG G ++D+P+ +A+ ++ +G ++ R +V
Sbjct: 364 MAIQIHGGGGLSNDFPLAAAWVNARALRLADGPDEVHRGVV 404
>pdb|2VKZ|G Chain G, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|H Chain H, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|I Chain I, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|G Chain G, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|H Chain H, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|I Chain I, Saccharomyces Cerevisiae Fas Type I
pdb|2UV8|G Chain G, Crystal Structure Of Yeast Fatty Acid Synthase With
Stalled Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|H Chain H, Crystal Structure Of Yeast Fatty Acid Synthase With
Stalled Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|I Chain I, Crystal Structure Of Yeast Fatty Acid Synthase With
Stalled Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 2051
Score = 30.0 bits (66), Expect = 0.37, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 7/52 (13%)
Query: 16 PVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIY 67
P +K A + EG AQ L+ +FGG G DY E +RD +YQ Y
Sbjct: 136 PFDKKSNSALFRAVGEGNAQ---LVAIFGGQGNTDDYFEE--LRD--LYQTY 180
>pdb|1R2J|A Chain A, Fkbi For Biosynthesis Of Methoxymalonyl Extender Unit Of
Fk520 Polyketide Immunosuppresant
Length = 366
Score = 29.6 bits (65), Expect = 0.42, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 25/39 (64%)
Query: 42 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSR 80
V G + VE+ RDAK+ +I EG++++ R+++++
Sbjct: 321 VLASAGAREGHVVERAYRDAKLMEIIEGSSEMCRVMLAQ 359
Score = 28.9 bits (63), Expect = 0.77, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 23/37 (62%)
Query: 5 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
V G + VE+ RDAK+ +I EG++++ R+++
Sbjct: 321 VLASAGAREGHVVERAYRDAKLMEIIEGSSEMCRVML 357
>pdb|2PFF|B Chain B, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|E Chain E, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|H Chain H, Structural Insights Of Yeast Fatty Acid Synthase
Length = 2006
Score = 29.6 bits (65), Expect = 0.47, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 7/52 (13%)
Query: 16 PVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIY 67
P +K A + EG AQ L+ +FGG G DY E +RD +YQ Y
Sbjct: 136 PFDKKSNSALFRAVGEGNAQ---LVAIFGGQGNTDDYFEE--LRD--LYQTY 180
>pdb|2HQM|A Chain A, Crystal Structure Of Glutathione Reductase Glr1 From The
Yeast Saccharomyces Cerevisiae
pdb|2HQM|B Chain B, Crystal Structure Of Glutathione Reductase Glr1 From The
Yeast Saccharomyces Cerevisiae
Length = 479
Score = 29.3 bits (64), Expect = 0.53, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 14 DYPVEKLMRDAKIYQ---IYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRD 60
++P K RDA +++ IY+ + +++ VVFG FN D VE RD
Sbjct: 92 NWPEFKQKRDAYVHRLNGIYQKNLEKEKVDVVFGWARFNKDGNVEVQKRD 141
>pdb|2EBA|A Chain A, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|C Chain C, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|D Chain D, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|E Chain E, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|F Chain F, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|G Chain G, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|H Chain H, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|I Chain I, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
Length = 385
Score = 28.9 bits (63), Expect = 0.69, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 42 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIERNS 87
+ GG+G +Y + M + + YEGT + L++ R I N+
Sbjct: 339 ILGGSGITLEYHAIRHMLNLETVYTYEGTHDVHTLVLGREITGLNA 384
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 1 MSHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV---VFGGNGF 48
M+ + GG+G +Y + M + + YEGT + L++ + G N F
Sbjct: 335 MARDILGGSGITLEYHAIRHMLNLETVYTYEGTHDVHTLVLGREITGLNAF 385
>pdb|3OIB|A Chain A, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis, Iodide Soak
pdb|3OIB|B Chain B, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis, Iodide Soak
pdb|3P4T|A Chain A, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis
pdb|3P4T|B Chain B, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis
Length = 403
Score = 28.9 bits (63), Expect = 0.69, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 30/59 (50%)
Query: 24 AKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAI 82
AK + G + + +FGG G+ ++ VE+ RD +I I GT +I + ++ +
Sbjct: 341 AKNTAVEAGEWVANQAVQLFGGMGYMAESEVERQYRDMRILGIGGGTTEILTSLAAKTL 399
Score = 28.5 bits (62), Expect = 1.0, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 5 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQI 36
+FGG G+ ++ VE+ RD +I I GT +I
Sbjct: 359 LFGGMGYMAESEVERQYRDMRILGIGGGTTEI 390
>pdb|1HJO|A Chain A, Atpase Domain Of Human Heat Shock 70kda Protein 1
Length = 380
Score = 28.5 bits (62), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 8/45 (17%)
Query: 16 PVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRD 60
PVEK +RDAK+ + AQI L++V G V+KL++D
Sbjct: 314 PVEKALRDAKLDK-----AQIHDLVLVGGSTRIPK---VQKLLQD 350
>pdb|2E8A|A Chain A, Crystal Structure Of The Human Hsp70 Atpase Domain In
Complex With Amp-Pnp
Length = 391
Score = 28.5 bits (62), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 8/45 (17%)
Query: 16 PVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRD 60
PVEK +RDAK+ + AQI L++V G V+KL++D
Sbjct: 319 PVEKALRDAKLDK-----AQIHDLVLVGGSTRIPK---VQKLLQD 355
>pdb|2E88|A Chain A, Crystal Structure Of The Human Hsp70 Atpase Domain In The
Apo Form
Length = 391
Score = 28.5 bits (62), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 8/45 (17%)
Query: 16 PVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRD 60
PVEK +RDAK+ + AQI L++V G V+KL++D
Sbjct: 319 PVEKALRDAKLDK-----AQIHDLVLVGGSTRIPK---VQKLLQD 355
>pdb|1S3X|A Chain A, The Crystal Structure Of The Human Hsp70 Atpase Domain
Length = 382
Score = 28.5 bits (62), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 8/45 (17%)
Query: 16 PVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRD 60
PVEK +RDAK+ + AQI L++V G V+KL++D
Sbjct: 316 PVEKALRDAKLDK-----AQIHDLVLVGGSTRIPK---VQKLLQD 352
>pdb|3A8Y|A Chain A, Crystal Structure Of The Complex Between The Bag5 Bd5 And
Hsp70 Nbd
pdb|3A8Y|B Chain B, Crystal Structure Of The Complex Between The Bag5 Bd5 And
Hsp70 Nbd
pdb|3ATU|A Chain A, Crystal Structure Of Human Hsp70 Nbd In The Adp- And Mg
Ion-Bound State
pdb|3ATV|A Chain A, Crystal Structure Of Human Hsp70 Nbd In The Adp-Bound And
Mg Ion-Free State
pdb|3AY9|A Chain A, Crystal Structure Of Human Hsp70 Nbd In The Adp-, Mg Ion-,
And K Ion- Bound State
Length = 392
Score = 28.5 bits (62), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 8/45 (17%)
Query: 16 PVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRD 60
PVEK +RDAK+ + AQI L++V G V+KL++D
Sbjct: 320 PVEKALRDAKLDK-----AQIHDLVLVGGSTRIPK---VQKLLQD 356
>pdb|3D2F|B Chain B, Crystal Structure Of A Complex Of Sse1p And Hsp70
pdb|3D2F|D Chain D, Crystal Structure Of A Complex Of Sse1p And Hsp70
Length = 382
Score = 28.5 bits (62), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 8/45 (17%)
Query: 16 PVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRD 60
PVEK +RDAK+ + AQI L++V G V+KL++D
Sbjct: 316 PVEKALRDAKLDK-----AQIHDLVLVGGSTRIPK---VQKLLQD 352
>pdb|3JXU|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 1a
(Hsp70-1) Atpase Domain In Complex With Adp And
Inorganic Phosphate
Length = 409
Score = 28.5 bits (62), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 8/45 (17%)
Query: 16 PVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRD 60
PVEK +RDAK+ + AQI L++V G V+KL++D
Sbjct: 338 PVEKALRDAKLDK-----AQIHDLVLVGGSTRIPK---VQKLLQD 374
>pdb|1XQS|C Chain C, Crystal Structure Of The Hspbp1 Core Domain Complexed With
The Fragment Of Hsp70 Atpase Domain
pdb|1XQS|D Chain D, Crystal Structure Of The Hspbp1 Core Domain Complexed With
The Fragment Of Hsp70 Atpase Domain
Length = 191
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 8/45 (17%)
Query: 16 PVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRD 60
PVEK +RDAK+ + AQI L++V G V+KL++D
Sbjct: 136 PVEKALRDAKLDK-----AQIHDLVLVGGSTRIP---KVQKLLQD 172
>pdb|3DJL|A Chain A, Crystal Structure Of Alkylation Response Protein E. Coli
Aidb
pdb|3U33|A Chain A, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|B Chain B, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|C Chain C, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|D Chain D, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|E Chain E, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|F Chain F, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|G Chain G, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|H Chain H, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|I Chain I, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|J Chain J, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|K Chain K, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|L Chain L, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
Length = 541
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 27/59 (45%)
Query: 24 AKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAI 82
AK G + + V GG G+ + + +L R+ + I+EG+ I L V R +
Sbjct: 381 AKFVICKRGMPFVAEAMEVLGGIGYCEESELPRLYREMPVNSIWEGSGNIMCLDVLRVL 439
Score = 25.8 bits (55), Expect = 6.8, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 5 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVV 42
V GG G+ + + +L R+ + I+EG+ I L V+
Sbjct: 399 VLGGIGYCEESELPRLYREMPVNSIWEGSGNIMCLDVL 436
>pdb|3I33|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 2
(Hsp70-2) Atpase Domain In Complex With Adp And
Inorganic Phosphate
Length = 404
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 8/45 (17%)
Query: 16 PVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRD 60
PVEK +RDAK+ + QIQ +++V G ++KL++D
Sbjct: 337 PVEKALRDAKLDK-----GQIQEIVLVGGSTRIPK---IQKLLQD 373
>pdb|3D2E|B Chain B, Crystal Structure Of A Complex Of Sse1p And Hsp70,
Selenomethionine- Labeled Crystals
pdb|3D2E|D Chain D, Crystal Structure Of A Complex Of Sse1p And Hsp70,
Selenomethionine- Labeled Crystals
Length = 382
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 8/45 (17%)
Query: 16 PVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRD 60
PVEK +RDAK+ + AQI L++V G V+KL++D
Sbjct: 316 PVEKALRDAKLDK-----AQIHDLVLVGGSTRIPK---VQKLLQD 352
>pdb|2NOV|A Chain A, Breakage-Reunion Domain Of S.Pneumoniae Topo Iv: Crystal
Structure Of A Gram-Positive Quinolone Target
pdb|2NOV|B Chain B, Breakage-Reunion Domain Of S.Pneumoniae Topo Iv: Crystal
Structure Of A Gram-Positive Quinolone Target
pdb|2NOV|C Chain C, Breakage-Reunion Domain Of S.Pneumoniae Topo Iv: Crystal
Structure Of A Gram-Positive Quinolone Target
pdb|2NOV|D Chain D, Breakage-Reunion Domain Of S.Pneumoniae Topo Iv: Crystal
Structure Of A Gram-Positive Quinolone Target
pdb|3FOE|A Chain A, Structural Insight Into The Quinolone-Dna Cleavage Complex
Of Type Iia Topoisomerases
pdb|3FOE|B Chain B, Structural Insight Into The Quinolone-Dna Cleavage Complex
Of Type Iia Topoisomerases
pdb|3FOF|A Chain A, Structural Insight Into The Quinolone-Dna Cleavage Complex
Of Type Iia Topoisomerases
pdb|3FOF|B Chain B, Structural Insight Into The Quinolone-Dna Cleavage Complex
Of Type Iia Topoisomerases
pdb|3K9F|A Chain A, Detailed Structural Insight Into The Quinolone-Dna
Cleavage Complex Of Type Iia Topoisomerases
pdb|3K9F|B Chain B, Detailed Structural Insight Into The Quinolone-Dna
Cleavage Complex Of Type Iia Topoisomerases
pdb|3KSA|A Chain A, Detailed Structural Insight Into The Dna Cleavage Complex
Of Type Iia Topoisomerases (Cleaved Form)
pdb|3KSA|B Chain B, Detailed Structural Insight Into The Dna Cleavage Complex
Of Type Iia Topoisomerases (Cleaved Form)
pdb|3KSB|A Chain A, Detailed Structural Insight Into The Dna Cleavage Complex
Of Type Iia Topoisomerases (Re-Sealed Form)
pdb|3KSB|B Chain B, Detailed Structural Insight Into The Dna Cleavage Complex
Of Type Iia Topoisomerases (Re-Sealed Form)
pdb|3LTN|A Chain A, Inhibitor-Stabilized Topoisomerase Iv-Dna Cleavage Complex
(S. Pneumoniae)
pdb|3LTN|B Chain B, Inhibitor-Stabilized Topoisomerase Iv-Dna Cleavage Complex
(S. Pneumoniae)
pdb|3RAF|A Chain A, Quinazolinedione-Dna Cleavage Complex Of Type Iv
Topoisomerase From S. Pneumoniae
pdb|3RAF|B Chain B, Quinazolinedione-Dna Cleavage Complex Of Type Iv
Topoisomerase From S. Pneumoniae
pdb|3RAD|A Chain A, Quinolone(Clinafloxacin)-Dna Cleavage Complex Of Type Iv
Topoisomerase From S. Pneumoniae
pdb|3RAD|B Chain B, Quinolone(Clinafloxacin)-Dna Cleavage Complex Of Type Iv
Topoisomerase From S. Pneumoniae
pdb|3RAE|A Chain A, Quinolone(Levofloxacin)-Dna Cleavage Complex Of Type Iv
Topoisomerase From S. Pneumoniae
pdb|3RAE|B Chain B, Quinolone(Levofloxacin)-Dna Cleavage Complex Of Type Iv
Topoisomerase From S. Pneumoniae
Length = 496
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 10 GFNSDYPVEKLMR--DAKIYQIYEGTAQIQRLIVVFGGNGF 48
G+ +D P L DA +Y I TA+I +L+ G F
Sbjct: 173 GYATDIPPHNLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDF 213
>pdb|4FSV|A Chain A, Crystal Structure Of A Heat Shock 70kda Protein 2 (Hspa2)
From Homo Sapiens At 1.80 A Resolution
Length = 387
Score = 26.6 bits (57), Expect = 3.8, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 8/45 (17%)
Query: 16 PVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRD 60
PVEK +RDAK+ + QIQ +++V G ++KL++D
Sbjct: 319 PVEKALRDAKLDK-----GQIQEIVLVGGSTRIPK---IQKLLQD 355
>pdb|1J5Q|A Chain A, The Structure And Evolution Of The Major Capsid Protein
Of A Large, Lipid-Containing, Dna Virus.
pdb|1J5Q|B Chain B, The Structure And Evolution Of The Major Capsid Protein
Of A Large, Lipid-Containing, Dna Virus.
pdb|3KK5|A Chain A, Crystal Structure Of Pbcv-1 Vp54 Fitted Into A Cryo-Em
Reconstruction Of The Virophage Sputnik
pdb|3KK5|B Chain B, Crystal Structure Of Pbcv-1 Vp54 Fitted Into A Cryo-Em
Reconstruction Of The Virophage Sputnik
pdb|3KK5|C Chain C, Crystal Structure Of Pbcv-1 Vp54 Fitted Into A Cryo-Em
Reconstruction Of The Virophage Sputnik
pdb|3KK5|D Chain D, Crystal Structure Of Pbcv-1 Vp54 Fitted Into A Cryo-Em
Reconstruction Of The Virophage Sputnik
pdb|3KK5|E Chain E, Crystal Structure Of Pbcv-1 Vp54 Fitted Into A Cryo-Em
Reconstruction Of The Virophage Sputnik
pdb|3KK5|F Chain F, Crystal Structure Of Pbcv-1 Vp54 Fitted Into A Cryo-Em
Reconstruction Of The Virophage Sputnik
pdb|3KK5|G Chain G, Crystal Structure Of Pbcv-1 Vp54 Fitted Into A Cryo-Em
Reconstruction Of The Virophage Sputnik
pdb|3KK5|H Chain H, Crystal Structure Of Pbcv-1 Vp54 Fitted Into A Cryo-Em
Reconstruction Of The Virophage Sputnik
pdb|3KK5|I Chain I, Crystal Structure Of Pbcv-1 Vp54 Fitted Into A Cryo-Em
Reconstruction Of The Virophage Sputnik
pdb|3KK5|J Chain J, Crystal Structure Of Pbcv-1 Vp54 Fitted Into A Cryo-Em
Reconstruction Of The Virophage Sputnik
pdb|3KK5|K Chain K, Crystal Structure Of Pbcv-1 Vp54 Fitted Into A Cryo-Em
Reconstruction Of The Virophage Sputnik
pdb|3KK5|L Chain L, Crystal Structure Of Pbcv-1 Vp54 Fitted Into A Cryo-Em
Reconstruction Of The Virophage Sputnik
pdb|3KK5|M Chain M, Crystal Structure Of Pbcv-1 Vp54 Fitted Into A Cryo-Em
Reconstruction Of The Virophage Sputnik
Length = 437
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 36 IQRLIVVFGGNGFNSDYPVEKLMRDAKI 63
+ ++ GGNG + YP E+L++D ++
Sbjct: 71 VVEFVLTKGGNGGTTYYPAEELLQDVEL 98
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 7 GGNGFNSDYPVEKLMRDAKI 26
GGNG + YP E+L++D ++
Sbjct: 79 GGNGGTTYYPAEELLQDVEL 98
>pdb|1M3Y|A Chain A, The Structure Of Major Capsid Protein Of A Large, Lipid
Containing, Dna Virus
pdb|1M3Y|B Chain B, The Structure Of Major Capsid Protein Of A Large, Lipid
Containing, Dna Virus
pdb|1M3Y|C Chain C, The Structure Of Major Capsid Protein Of A Large, Lipid
Containing, Dna Virus
pdb|1M3Y|D Chain D, The Structure Of Major Capsid Protein Of A Large, Lipid
Containing, Dna Virus
Length = 413
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 36 IQRLIVVFGGNGFNSDYPVEKLMRDAKI 63
+ ++ GGNG + YP E+L++D ++
Sbjct: 47 VVEFVLTKGGNGGTTYYPAEELLQDVEL 74
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 7 GGNGFNSDYPVEKLMRDAKI 26
GGNG + YP E+L++D ++
Sbjct: 55 GGNGGTTYYPAEELLQDVEL 74
>pdb|1M4X|A Chain A, Pbcv-1 Virus Capsid, Quasi-Atomic Model
pdb|1M4X|B Chain B, Pbcv-1 Virus Capsid, Quasi-Atomic Model
pdb|1M4X|C Chain C, Pbcv-1 Virus Capsid, Quasi-Atomic Model
Length = 413
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 36 IQRLIVVFGGNGFNSDYPVEKLMRDAKI 63
+ ++ GGNG + YP E+L++D ++
Sbjct: 47 VVEFVLTKGGNGGTTYYPAEELLQDVEL 74
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 7 GGNGFNSDYPVEKLMRDAKI 26
GGNG + YP E+L++D ++
Sbjct: 55 GGNGGTTYYPAEELLQDVEL 74
>pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna
pdb|1Z7E|B Chain B, Crystal Structure Of Full Length Arna
pdb|1Z7E|C Chain C, Crystal Structure Of Full Length Arna
pdb|1Z7E|D Chain D, Crystal Structure Of Full Length Arna
pdb|1Z7E|E Chain E, Crystal Structure Of Full Length Arna
pdb|1Z7E|F Chain F, Crystal Structure Of Full Length Arna
Length = 660
Score = 26.2 bits (56), Expect = 4.3, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 33 TAQIQRLIVVFGGNGFNSDYPVEKLMRD--AKIYQIYEGTAQIQRLI 77
TA+ + +++ G NGF ++ E+L+R+ ++Y + G+ I R +
Sbjct: 311 TARRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL 357
>pdb|1Z73|A Chain A, Crystal Structure Of E. Coli Arna Dehydrogenase
(decarboxylase) Domain, S433a Mutant
Length = 358
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 33 TAQIQRLIVVFGGNGFNSDYPVEKLMRDA--KIYQIYEGTAQIQRLI 77
TA+ + +++ G NGF ++ E+L+R+ ++Y + G+ I R +
Sbjct: 9 TARRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL 55
>pdb|1Z7B|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619e Mutant
Length = 358
Score = 26.2 bits (56), Expect = 5.1, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 33 TAQIQRLIVVFGGNGFNSDYPVEKLMRDA--KIYQIYEGTAQIQRLI 77
TA+ + +++ G NGF ++ E+L+R+ ++Y + G+ I R +
Sbjct: 9 TARRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL 55
>pdb|1Z75|A Chain A, Crystal Structure Of Arna Dehydrogenase (decarboxylase)
Domain, R619m Mutant
Length = 358
Score = 26.2 bits (56), Expect = 5.1, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 33 TAQIQRLIVVFGGNGFNSDYPVEKLMRDA--KIYQIYEGTAQIQRLI 77
TA+ + +++ G NGF ++ E+L+R+ ++Y + G+ I R +
Sbjct: 9 TARRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL 55
>pdb|1U9J|A Chain A, Crystal Structure Of E. Coli Arna (Pmri) Decarboxylase
Domain
Length = 358
Score = 26.2 bits (56), Expect = 5.1, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 33 TAQIQRLIVVFGGNGFNSDYPVEKLMRDA--KIYQIYEGTAQIQRLI 77
TA+ + +++ G NGF ++ E+L+R+ ++Y + G+ I R +
Sbjct: 9 TARRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL 55
>pdb|1Z74|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619y Mutant
Length = 358
Score = 26.2 bits (56), Expect = 5.3, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 33 TAQIQRLIVVFGGNGFNSDYPVEKLMRDA--KIYQIYEGTAQIQRLI 77
TA+ + +++ G NGF ++ E+L+R+ ++Y + G+ I R +
Sbjct: 9 TARRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL 55
>pdb|3SWO|A Chain A, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|B Chain B, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|C Chain C, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|D Chain D, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
Length = 399
Score = 26.2 bits (56), Expect = 5.3, Method: Composition-based stats.
Identities = 13/59 (22%), Positives = 28/59 (47%)
Query: 24 AKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAI 82
K+ + E A + + GG+G +Y + + + YEGT+++ L + +A+
Sbjct: 333 GKLNNVREAIAIARECRTLLGGSGITLEYSPLRHANNLESVLTYEGTSEMHLLSIGKAL 391
>pdb|3FE1|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 6
(Hsp70b') Atpase Domain In Complex With Adp And
Inorganic Phosphate
pdb|3FE1|B Chain B, Crystal Structure Of The Human 70kda Heat Shock Protein 6
(Hsp70b') Atpase Domain In Complex With Adp And
Inorganic Phosphate
pdb|3FE1|C Chain C, Crystal Structure Of The Human 70kda Heat Shock Protein 6
(Hsp70b') Atpase Domain In Complex With Adp And
Inorganic Phosphate
Length = 403
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 8/45 (17%)
Query: 16 PVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRD 60
PVEK +RDAK+ + AQI +++V G V+KL++D
Sbjct: 336 PVEKALRDAKLDK-----AQIHDVVLVGGSTRIPK---VQKLLQD 372
>pdb|3UCA|A Chain A, Crystal Structure Of Isoprenoid Synthase (Target
Efi-501974) From Clostridium Perfringens
pdb|3UCA|B Chain B, Crystal Structure Of Isoprenoid Synthase (Target
Efi-501974) From Clostridium Perfringens
Length = 324
Score = 25.0 bits (53), Expect = 10.0, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 11 FNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDY 52
FN D K++ D+ Y I G +I+ ++++ + SDY
Sbjct: 52 FNKDREYNKVLYDSMAYSINVGGKRIRPILMLLSYYIYKSDY 93
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.140 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,633,731
Number of Sequences: 62578
Number of extensions: 100266
Number of successful extensions: 1012
Number of sequences better than 100.0: 64
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 910
Number of HSP's gapped (non-prelim): 124
length of query: 87
length of database: 14,973,337
effective HSP length: 55
effective length of query: 32
effective length of database: 11,531,547
effective search space: 369009504
effective search space used: 369009504
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)