Query psy10337
Match_columns 87
No_of_seqs 178 out of 1100
Neff 10.2
Searched_HMMs 46136
Date Fri Aug 16 15:24:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10337.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10337hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0140|consensus 99.8 3.3E-20 7E-25 113.7 6.7 80 7-86 327-406 (408)
2 PF00441 Acyl-CoA_dh_1: Acyl-C 99.7 1.2E-16 2.6E-21 89.8 7.6 72 12-83 79-150 (150)
3 KOG0141|consensus 99.6 2.6E-16 5.6E-21 96.9 4.1 73 14-86 349-421 (421)
4 PTZ00456 acyl-CoA dehydrogenas 99.6 1.3E-15 2.9E-20 101.8 7.2 66 18-83 413-479 (622)
5 PRK03354 crotonobetainyl-CoA d 99.6 4.6E-15 1E-19 94.3 7.9 72 16-87 309-380 (380)
6 TIGR03203 pimD_small pimeloyl- 99.6 3.5E-15 7.6E-20 94.9 7.3 66 16-81 310-375 (378)
7 PLN02636 acyl-coenzyme A oxida 99.6 6.4E-15 1.4E-19 99.4 7.5 71 16-86 417-487 (686)
8 TIGR03207 cyc_hxne_CoA_dh cycl 99.6 1.8E-15 3.8E-20 95.9 4.6 65 16-81 306-370 (372)
9 cd01157 MCAD Medium chain acyl 99.6 5.6E-15 1.2E-19 93.7 6.8 69 17-85 310-378 (378)
10 PLN02526 acyl-coenzyme A oxida 99.6 3.6E-15 7.9E-20 95.7 5.7 69 17-85 331-399 (412)
11 PLN02312 acyl-CoA oxidase 99.6 8.2E-15 1.8E-19 98.8 7.4 71 16-86 419-489 (680)
12 KOG0139|consensus 99.6 1.1E-15 2.4E-20 94.9 2.9 63 10-72 336-398 (398)
13 cd01151 GCD Glutaryl-CoA dehyd 99.6 8.1E-15 1.8E-19 93.3 6.7 70 16-85 314-383 (386)
14 PRK11561 isovaleryl CoA dehydr 99.6 9.5E-15 2.1E-19 96.4 7.1 66 19-84 376-441 (538)
15 COG1960 CaiA Acyl-CoA dehydrog 99.6 1.4E-14 3.1E-19 92.3 7.5 68 19-86 323-390 (393)
16 PRK12341 putative acyl-CoA deh 99.6 1.5E-14 3.2E-19 92.0 7.1 74 13-86 307-380 (381)
17 cd01161 VLCAD Very long chain 99.6 1.7E-14 3.6E-19 92.6 7.3 70 17-86 339-408 (409)
18 cd01155 ACAD_FadE2 Acyl-CoA de 99.6 1.4E-14 3E-19 92.5 6.8 67 17-83 327-393 (394)
19 PLN02876 acyl-CoA dehydrogenas 99.6 1.7E-14 3.6E-19 99.1 7.4 69 17-85 751-819 (822)
20 PTZ00461 isovaleryl-CoA dehydr 99.5 2.7E-14 5.8E-19 91.7 7.7 68 18-85 341-408 (410)
21 PLN02519 isovaleryl-CoA dehydr 99.5 1.8E-14 3.8E-19 92.3 6.7 68 18-85 336-403 (404)
22 PTZ00460 acyl-CoA dehydrogenas 99.5 2.1E-14 4.5E-19 96.5 6.8 70 17-86 364-433 (646)
23 cd01162 IBD Isobutyryl-CoA deh 99.5 3E-14 6.4E-19 90.4 6.7 68 18-85 308-375 (375)
24 cd01160 LCAD Long chain acyl-C 99.5 8.1E-14 1.7E-18 88.2 6.6 65 18-82 307-371 (372)
25 cd01152 ACAD_fadE6_17_26 Putat 99.5 5.3E-14 1.1E-18 89.5 4.9 67 18-84 306-380 (380)
26 cd01156 IVD Isovaleryl-CoA deh 99.5 1.4E-13 3.1E-18 87.2 6.5 67 18-84 310-376 (376)
27 TIGR03204 pimC_large pimeloyl- 99.5 1E-13 2.2E-18 88.7 5.6 67 18-84 314-394 (395)
28 cd01150 AXO Peroxisomal acyl-C 99.5 1.7E-13 3.7E-18 91.8 6.0 71 16-86 376-446 (610)
29 PRK09463 fadE acyl-CoA dehydro 99.5 6.3E-14 1.4E-18 95.5 3.9 66 13-78 399-466 (777)
30 cd01154 AidB Proteins involved 99.5 1.9E-13 4.2E-18 88.0 5.9 63 20-82 354-416 (418)
31 PLN02443 acyl-coenzyme A oxida 99.4 2.5E-13 5.5E-18 91.5 6.5 70 17-86 373-442 (664)
32 cd01159 NcnH Naphthocyclinone 99.4 2.9E-13 6.2E-18 85.8 6.3 67 18-84 303-370 (370)
33 cd01158 SCAD_SBCAD Short chain 99.4 4.7E-13 1E-17 84.7 7.0 69 16-84 305-373 (373)
34 PRK13026 acyl-CoA dehydrogenas 99.4 3.2E-13 6.8E-18 92.0 6.2 63 16-78 401-465 (774)
35 KOG0137|consensus 99.4 2.3E-13 4.9E-18 89.3 4.5 68 16-83 392-459 (634)
36 cd01153 ACAD_fadE5 Putative ac 99.3 2.5E-12 5.5E-17 82.6 5.8 63 18-80 341-404 (407)
37 cd00567 ACAD Acyl-CoA dehydrog 99.2 3.7E-11 8E-16 74.8 5.4 64 17-80 264-327 (327)
38 cd01163 DszC Dibenzothiophene 99.0 4.9E-10 1.1E-14 71.3 5.0 66 17-83 307-372 (377)
39 PTZ00457 acyl-CoA dehydrogenas 98.7 1.9E-08 4E-13 66.8 3.4 59 9-75 300-362 (520)
40 KOG0138|consensus 98.4 2.3E-07 5E-12 57.9 3.5 75 11-85 353-427 (432)
41 KOG1469|consensus 98.4 3.3E-08 7.1E-13 60.8 -0.9 69 16-84 314-382 (392)
42 PF08028 Acyl-CoA_dh_2: Acyl-C 98.3 2.3E-06 5E-11 47.4 4.5 53 18-70 80-132 (134)
43 KOG0135|consensus 98.3 4.5E-07 9.8E-12 60.2 1.8 73 15-87 395-467 (661)
44 KOG0136|consensus 97.9 6.1E-06 1.3E-10 55.7 1.7 71 16-86 380-450 (670)
45 KOG0140|consensus 97.6 5.7E-05 1.2E-09 47.6 2.9 39 2-40 359-397 (408)
46 KOG0141|consensus 97.4 6.8E-05 1.5E-09 47.3 1.0 39 2-40 374-412 (421)
47 TIGR03203 pimD_small pimeloyl- 96.9 0.00077 1.7E-08 43.4 2.3 38 2-39 333-370 (378)
48 PRK13026 acyl-CoA dehydrogenas 96.6 0.0016 3.6E-08 45.7 2.4 50 2-52 424-475 (774)
49 PTZ00456 acyl-CoA dehydrogenas 96.5 0.0046 9.9E-08 42.6 4.1 36 2-37 434-469 (622)
50 PRK11561 isovaleryl CoA dehydr 96.2 0.0029 6.2E-08 42.9 1.9 36 2-37 396-431 (538)
51 PRK09463 fadE acyl-CoA dehydro 96.2 0.0028 6E-08 44.6 1.6 43 2-44 425-469 (777)
52 KOG0139|consensus 95.4 0.0024 5.1E-08 41.0 -1.1 32 2-33 365-396 (398)
53 COG1960 CaiA Acyl-CoA dehydrog 95.2 0.015 3.3E-07 37.5 2.2 38 2-39 343-380 (393)
54 cd01157 MCAD Medium chain acyl 94.6 0.028 6E-07 36.1 2.1 37 2-38 332-368 (378)
55 PF00441 Acyl-CoA_dh_1: Acyl-C 94.5 0.024 5.2E-07 31.4 1.6 38 2-39 106-143 (150)
56 PTZ00461 isovaleryl-CoA dehydr 94.4 0.035 7.6E-07 36.2 2.3 37 2-38 362-398 (410)
57 cd01151 GCD Glutaryl-CoA dehyd 94.4 0.032 6.9E-07 36.0 2.1 37 2-38 337-373 (386)
58 cd01155 ACAD_FadE2 Acyl-CoA de 94.3 0.031 6.7E-07 36.2 1.9 37 2-38 349-385 (394)
59 PLN02876 acyl-CoA dehydrogenas 94.3 0.039 8.4E-07 39.2 2.4 37 2-38 773-809 (822)
60 TIGR03207 cyc_hxne_CoA_dh cycl 94.3 0.033 7E-07 35.8 1.9 36 2-38 329-364 (372)
61 cd01162 IBD Isobutyryl-CoA deh 94.1 0.037 8E-07 35.6 2.0 37 2-38 329-365 (375)
62 PLN02636 acyl-coenzyme A oxida 93.9 0.041 8.8E-07 38.5 1.9 37 2-38 440-476 (686)
63 PLN02312 acyl-CoA oxidase 93.9 0.037 8E-07 38.7 1.6 37 2-38 442-478 (680)
64 PLN02526 acyl-coenzyme A oxida 93.8 0.029 6.2E-07 36.7 1.0 37 2-38 353-389 (412)
65 PTZ00460 acyl-CoA dehydrogenas 93.5 0.041 8.9E-07 38.2 1.4 37 2-38 386-422 (646)
66 cd01160 LCAD Long chain acyl-C 93.4 0.061 1.3E-06 34.5 1.9 37 2-38 328-364 (372)
67 PLN02519 isovaleryl-CoA dehydr 93.3 0.057 1.2E-06 35.2 1.8 37 2-38 357-393 (404)
68 PRK03354 crotonobetainyl-CoA d 93.3 0.067 1.4E-06 34.5 2.0 37 2-38 332-368 (380)
69 cd01156 IVD Isovaleryl-CoA deh 93.3 0.064 1.4E-06 34.4 1.9 37 2-38 331-367 (376)
70 TIGR03204 pimC_large pimeloyl- 93.1 0.085 1.8E-06 34.3 2.3 37 2-38 345-385 (395)
71 PRK12341 putative acyl-CoA deh 93.1 0.073 1.6E-06 34.3 2.0 37 2-38 333-369 (381)
72 cd01163 DszC Dibenzothiophene 93.0 0.049 1.1E-06 35.0 1.1 45 2-49 329-373 (377)
73 cd01154 AidB Proteins involved 92.8 0.049 1.1E-06 35.7 0.9 36 2-37 373-408 (418)
74 cd01161 VLCAD Very long chain 92.8 0.074 1.6E-06 34.7 1.7 37 2-38 361-397 (409)
75 cd01153 ACAD_fadE5 Putative ac 91.6 0.11 2.3E-06 34.0 1.4 37 2-38 362-398 (407)
76 TIGR02309 HpaB-1 4-hydroxyphen 91.2 0.34 7.3E-06 32.7 3.4 34 16-50 358-391 (477)
77 cd01152 ACAD_fadE6_17_26 Putat 90.9 0.16 3.4E-06 32.8 1.7 37 2-38 327-371 (380)
78 PLN02443 acyl-coenzyme A oxida 90.5 0.16 3.5E-06 35.6 1.5 37 2-38 395-431 (664)
79 cd01159 NcnH Naphthocyclinone 90.5 0.2 4.3E-06 32.2 1.8 33 2-34 324-356 (370)
80 cd01158 SCAD_SBCAD Short chain 90.0 0.28 6.1E-06 31.4 2.2 37 2-38 328-364 (373)
81 cd00567 ACAD Acyl-CoA dehydrog 89.9 0.25 5.4E-06 30.9 1.9 37 2-38 286-322 (327)
82 cd01150 AXO Peroxisomal acyl-C 88.8 0.12 2.6E-06 35.7 -0.1 37 2-38 399-435 (610)
83 KOG0137|consensus 88.5 0.2 4.4E-06 34.5 0.8 36 2-37 415-450 (634)
84 COG2087 CobU Adenosyl cobinami 34.8 29 0.00062 20.6 1.4 19 45-63 131-149 (175)
No 1
>KOG0140|consensus
Probab=99.82 E-value=3.3e-20 Score=113.72 Aligned_cols=80 Identities=44% Similarity=0.726 Sum_probs=74.3
Q ss_pred ccccccCCChHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHHhc
Q psy10337 7 GGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIERN 86 (87)
Q Consensus 7 g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~~~ 86 (87)
.++..+++.+-..+++++|+++++.+-.++..|+|++||.||..|||+++++||+++.+|++||++|||.+|+|.+|.+|
T Consensus 327 aa~evd~~r~~sy~aSiAK~fA~D~an~~at~AvQifGG~Gfn~eYpVeklmRDaki~QIyEGTsqiqRlvIsR~ll~~~ 406 (408)
T KOG0140|consen 327 AAWEVDNGRRNSYYASIAKLFATDTANQAATNAVQIFGGNGFNKEYPVEKLMRDAKIYQIYEGTSQIQRLVISRSLLQKF 406 (408)
T ss_pred HHHHhhcCCcchHHHHHHHHHhhhhHHHHHHHHHHhhccCCccccccHHHHHhhhhhhHhhhchHHHHHHHHHHHHHHHh
Confidence 45556677666889999999999999999999999999999999999999999999999999999999999999999875
No 2
>PF00441 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006090 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0055114 oxidation-reduction process; PDB: 2EBA_A 1RX0_C 1R2J_A 2OKU_A 3MKH_C 2JIF_C 3GQT_D 3EON_D 3EOM_C 3D6B_A ....
Probab=99.70 E-value=1.2e-16 Score=89.77 Aligned_cols=72 Identities=26% Similarity=0.464 Sum_probs=67.1
Q ss_pred cCCChHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHH
Q psy10337 12 NSDYPVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 83 (87)
Q Consensus 12 ~~~~~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l 83 (87)
+++.....+.+.+|+++++...++++.+++++|+.|+.++++++++++|++...+++|++|++++.|++.+|
T Consensus 79 ~~~~~~~~~~a~~K~~~t~~~~~~~~~~~~l~G~~g~~~~~~l~~~~rda~~~~i~~G~~ev~~~~ia~~~l 150 (150)
T PF00441_consen 79 DAGQNDPVEAAIAKYFATELAQDIAEEAMQLLGGRGLTEDNPLERLYRDARAFTIYGGTNEVQRNQIARRLL 150 (150)
T ss_dssp HTTSSTHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTTSSHHHHHHHHHHGGTSTSTHHHHHHHHHHHHH
T ss_pred ccccccccccchhhhhcccccccchhhhhhhhhhhhhcccCHHHHHHhhcceeeeccCCHHHHHHHHHHHhC
Confidence 444445788899999999999999999999999999999999999999999999999999999999999986
No 3
>KOG0141|consensus
Probab=99.63 E-value=2.6e-16 Score=96.93 Aligned_cols=73 Identities=32% Similarity=0.537 Sum_probs=67.4
Q ss_pred CChHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHHhc
Q psy10337 14 DYPVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIERN 86 (87)
Q Consensus 14 ~~~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~~~ 86 (87)
+...+..++.+++|+++.+++++..++|++||.||.+|+|..|++||++...|+.||+||.|.+|+|.+..+|
T Consensus 349 g~~~~kdcag~il~aaE~~tqVald~iQ~~GGnGYineyp~gr~lrDAklyeIgaGTsEirr~lIgRel~~e~ 421 (421)
T KOG0141|consen 349 GNVDPKDCAGVILYAAEKATQVALDAIQCLGGNGYINEYPTGRLLRDAKLYEIGAGTSEIRRLLIGRELNKEY 421 (421)
T ss_pred CCCChhhhhhhhhhHhhhhHHHHHHHHhhccCcccccccchhhhhhhceeeeccCChHHHHHHHHHHHhhccC
Confidence 3445677899999999999999999999999999999999999999999999999999999999999887654
No 4
>PTZ00456 acyl-CoA dehydrogenase; Provisional
Probab=99.62 E-value=1.3e-15 Score=101.79 Aligned_cols=66 Identities=30% Similarity=0.437 Sum_probs=62.6
Q ss_pred HHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHH-HHHHHHHH
Q psy10337 18 EKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR-LIVSRAII 83 (87)
Q Consensus 18 ~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~-~~ia~~~l 83 (87)
...++++|.++++.+.+++..++|+|||+||+++++++++|||++..+|++||++||+ ++|++.++
T Consensus 413 ~~~t~iaK~~~te~a~~va~~aiQv~GG~Gy~~e~~ler~~RDari~~i~eGt~~iq~~dli~rkll 479 (622)
T PTZ00456 413 GFYTPIAKGCLTEWGVEAASRCLQVWGGHGYIKGNGMEQILRDARIGTLYEGTTGIQALDFIGRKVL 479 (622)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccCCCccCCchHHHHHHHhhcccccCChHHHHHHHHHHHHhh
Confidence 3468899999999999999999999999999999999999999999999999999997 69999887
No 5
>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated
Probab=99.60 E-value=4.6e-15 Score=94.31 Aligned_cols=72 Identities=17% Similarity=0.314 Sum_probs=67.4
Q ss_pred hHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHHhcC
Q psy10337 16 PVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIERNS 87 (87)
Q Consensus 16 ~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~~~~ 87 (87)
+.....+++|+++++.+.++++.+++++|+.||+++++++++|||++...+++|++|+++++|++.+++.|.
T Consensus 309 ~~~~~~~~aK~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~~~~ 380 (380)
T PRK03354 309 ITSGDAAMCKYFCANAAFEVVDSAMQVLGGVGIAGNHRISRFWRDLRVDRVSGGSDEMQILTLGRAVLKQYR 380 (380)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhcCceecCCChHHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhcC
Confidence 345678899999999999999999999999999999999999999999999999999999999999988763
No 6
>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit. Members of this protein family are the PimD proteins of species such as Rhodopseudomonas palustris, Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=99.60 E-value=3.5e-15 Score=94.94 Aligned_cols=66 Identities=17% Similarity=0.108 Sum_probs=62.7
Q ss_pred hHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHH
Q psy10337 16 PVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRA 81 (87)
Q Consensus 16 ~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~ 81 (87)
+....++++|+++++.+..+++.++|+|||+||+++++++++|||++..++++|+++++++.+++.
T Consensus 310 ~~~~~~a~aK~~a~e~a~~va~~aiqi~Gg~G~t~e~~~~~~~r~a~~~~~~~G~~~~~~~~~~~~ 375 (378)
T TIGR03203 310 ERANAIAAAKVQIGKSLKFVGQQSIQLHGGIGMTMEAKIGHYFKRLTMIEHTFGDTDFHLSRVSAA 375 (378)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccceeecccchHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 445789999999999999999999999999999999999999999999999999999999999883
No 7
>PLN02636 acyl-coenzyme A oxidase
Probab=99.59 E-value=6.4e-15 Score=99.41 Aligned_cols=71 Identities=20% Similarity=0.295 Sum_probs=67.4
Q ss_pred hHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHHhc
Q psy10337 16 PVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIERN 86 (87)
Q Consensus 16 ~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~~~ 86 (87)
+....++++|.++++.+.++++.|+|++||.||+.++++++++||++...+++|+++|++++||+.+++.|
T Consensus 417 ~~~~~as~aK~~~t~~a~~~~~~~rq~~GG~Gy~~~~~l~~l~rd~~~~~t~EG~n~Vl~~~iAr~ll~~~ 487 (686)
T PLN02636 417 DVHALSAGLKAYITSYTAKALSTCREACGGHGYAAVNRFGSLRNDHDIFQTFEGDNTVLLQQVAADLLKQY 487 (686)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCcCcHHHHHHHhhhheeecChHHHHHHHHHHHHHHHH
Confidence 46778999999999999999999999999999999999999999999999999999999999999998754
No 8
>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase. Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase.
Probab=99.58 E-value=1.8e-15 Score=95.89 Aligned_cols=65 Identities=26% Similarity=0.378 Sum_probs=60.7
Q ss_pred hHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHH
Q psy10337 16 PVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRA 81 (87)
Q Consensus 16 ~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~ 81 (87)
+.....+++|+++++.+.++++.++|++||.||+++ |++++|||++..+|++||+|+++++|++.
T Consensus 306 ~~~~~~~~aK~~~~~~a~~v~~~a~~v~Gg~g~~~~-~l~r~~rd~~~~~i~~Gt~~~~~~~i~~~ 370 (372)
T TIGR03207 306 PHTSEAAMCKWWAPKLAYDVIHQCLLTHGHGGYDRG-DMEQRLRDVLGFQIGDGTAQIMKTIIARH 370 (372)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCc-hHHHHHhHhhheeecCCHHHHHHHHHhhc
Confidence 335568899999999999999999999999999999 99999999999999999999999999874
No 9
>cd01157 MCAD Medium chain acyl-CoA dehydrogenase. MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer.
Probab=99.58 E-value=5.6e-15 Score=93.71 Aligned_cols=69 Identities=54% Similarity=0.801 Sum_probs=64.8
Q ss_pred HHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHHh
Q psy10337 17 VEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIER 85 (87)
Q Consensus 17 ~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~~ 85 (87)
.....+++|+++++.+..+++.++|++||.||+++++++++|||++..++++|++|+++++|++.++++
T Consensus 310 ~~~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~~ 378 (378)
T cd01157 310 NTYYASIAKAFAADIANQLATDAVQIFGGNGFNSEYPVEKLMRDAKIYQIYEGTSQIQRLIISREHLGK 378 (378)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCCHHHHHHHHHhhceecCCHHHHHHHHHHHHHhcC
Confidence 345678899999999999999999999999999999999999999999999999999999999998763
No 10
>PLN02526 acyl-coenzyme A oxidase
Probab=99.58 E-value=3.6e-15 Score=95.74 Aligned_cols=69 Identities=25% Similarity=0.297 Sum_probs=65.1
Q ss_pred HHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHHh
Q psy10337 17 VEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIER 85 (87)
Q Consensus 17 ~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~~ 85 (87)
.....+++|+++++.+.++++.++|++||.||+++++++++|||++...+++|++|++++.|++.+++.
T Consensus 331 ~~~~~~~aK~~a~~~a~~v~~~a~~~~Gg~G~~~~~~l~r~~RD~~~~~~~~G~~ev~~~~i~~~~l~~ 399 (412)
T PLN02526 331 TPGHASLGKAWITKKARETVALGRELLGGNGILADFLVAKAFCDLEPIYTYEGTYDINALVTGREITGI 399 (412)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCcCHHHHHHhcccceEecCCHHHHHHHHHHHHHhcC
Confidence 355688999999999999999999999999999999999999999999999999999999999999764
No 11
>PLN02312 acyl-CoA oxidase
Probab=99.58 E-value=8.2e-15 Score=98.81 Aligned_cols=71 Identities=17% Similarity=0.297 Sum_probs=67.4
Q ss_pred hHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHHhc
Q psy10337 16 PVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIERN 86 (87)
Q Consensus 16 ~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~~~ 86 (87)
+....++++|.++++.+.++++.|+|+|||+||+.+++++++++|++...+++|+++|++++||+.+++.|
T Consensus 419 ~~~~~as~aKa~~t~~a~~~~~~~rq~~GG~Gy~~~~~l~~l~rd~~~~~t~EG~n~Vl~~~iAr~ll~~~ 489 (680)
T PLN02312 419 AIHVVSSGFKAVLTWHNMRTLQECREACGGQGLKTENRVGQLKAEYDVQSTFEGDNNVLMQQVSKALLAEY 489 (680)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccCcHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHH
Confidence 46778999999999999999999999999999999999999999999999999999999999999988754
No 12
>KOG0139|consensus
Probab=99.57 E-value=1.1e-15 Score=94.92 Aligned_cols=63 Identities=37% Similarity=0.552 Sum_probs=58.9
Q ss_pred cccCCChHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHH
Q psy10337 10 GFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQ 72 (87)
Q Consensus 10 g~~~~~~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~ 72 (87)
--+.+.|...+++|+|+++++.++.++++|+|++||.||++++|.+++|||+|...|++|++|
T Consensus 336 ~k~~G~pf~keAAMAKl~ase~A~~~t~qCiq~lGG~Gyt~d~paek~yRDarI~~IyeGtsn 398 (398)
T KOG0139|consen 336 MKDQGLPFVKEAAMAKLYASEVATKTTHQCIQWLGGVGYTKDFPAEKFYRDARIGEIYEGTSN 398 (398)
T ss_pred HHHcCCchHHHHHHHHHhhhhhhhHHHHHHHHHHhcccccccccHHHHhhhceeeeeecCCCC
Confidence 335677889999999999999999999999999999999999999999999999999999864
No 13
>cd01151 GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.
Probab=99.57 E-value=8.1e-15 Score=93.33 Aligned_cols=70 Identities=24% Similarity=0.333 Sum_probs=65.5
Q ss_pred hHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHHh
Q psy10337 16 PVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIER 85 (87)
Q Consensus 16 ~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~~ 85 (87)
+.....+++|.++++.+..++..++|++||.||++++|++++|||++..++++|++++++++|++.+|+-
T Consensus 314 ~~~~~~~~~K~~~~~~a~~~~~~a~~~~Gg~g~~~~~~l~r~~RD~~~~~~~~G~~~~~~~~i~~~~l~~ 383 (386)
T cd01151 314 ATPEQISLLKRNNCGKALEIARTAREMLGGNGISDEYHIIRHMVNLESVNTYEGTHDIHALILGRAITGI 383 (386)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCHHHHHHHhhhcceecCCHHHHHHHHHHHHHhcc
Confidence 3456789999999999999999999999999999999999999999999999999999999999998763
No 14
>PRK11561 isovaleryl CoA dehydrogenase; Provisional
Probab=99.57 E-value=9.5e-15 Score=96.35 Aligned_cols=66 Identities=24% Similarity=0.388 Sum_probs=62.0
Q ss_pred HHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHH
Q psy10337 19 KLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIE 84 (87)
Q Consensus 19 ~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~ 84 (87)
...+++|.++++.+..++..++|+|||.||+++++++++|||+++..|++||++||++.+++.+.+
T Consensus 376 l~t~~aK~~~~e~a~~v~~~Amqv~GG~Gy~ee~~lerl~RDa~v~~I~eGt~~i~~ldv~r~l~~ 441 (538)
T PRK11561 376 LFTPAAKFVICKRGIPFVAEAMEVLGGIGYCEESELPRLYREMPVNSIWEGSGNIMCLDVLRVLNK 441 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCcHHHHHHHHHhhhhcccCCHHHHHHHHHHHHhc
Confidence 356689999999999999999999999999999999999999999999999999999999998754
No 15
>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism]
Probab=99.57 E-value=1.4e-14 Score=92.25 Aligned_cols=68 Identities=37% Similarity=0.652 Sum_probs=65.7
Q ss_pred HHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHHhc
Q psy10337 19 KLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIERN 86 (87)
Q Consensus 19 ~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~~~ 86 (87)
..++++|+++++.+..++..++|++||.||+.+++++++|||++..+|++|+++++++++++.+++..
T Consensus 323 ~~~~~aK~~a~~~~~~~~~~a~q~~Gg~g~~~e~~i~r~~rda~~~~i~~Gt~~i~~~~i~~~~~~~~ 390 (393)
T COG1960 323 AEAAMAKLFATEAALEVADEAVQVHGGYGYTEEYPVERYYRDARILRIYEGTSEIQRLIIARRLLGLP 390 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCchHHHHHHHhHhheeccCHHHHHHHHHHHHHhhhc
Confidence 78999999999999999999999999999999999999999999999999999999999999998763
No 16
>PRK12341 putative acyl-CoA dehydrogenase; Provisional
Probab=99.56 E-value=1.5e-14 Score=92.02 Aligned_cols=74 Identities=24% Similarity=0.362 Sum_probs=67.4
Q ss_pred CCChHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHHhc
Q psy10337 13 SDYPVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIERN 86 (87)
Q Consensus 13 ~~~~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~~~ 86 (87)
++.+.....+++|+++++.+.+++..+++++||.||.+++|++++|||++...+++|++|++++.|++.+++.+
T Consensus 307 ~~~~~~~~~~~aK~~~~~~a~~v~~~~~~~~Gg~g~~~~~~l~r~~RD~~~~~~~~g~~~~~~~~i~~~~~~~~ 380 (381)
T PRK12341 307 NGQSLRTSAALAKLYCARTAMEVIDDAIQIMGGLGYTDEARVSRFWRDVRCERIGGGTDEIMIYIAGRQILKDY 380 (381)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHHhhcceecCCHHHHHHHHHHHHHHhhc
Confidence 33344567899999999999999999999999999999999999999999999999999999999999998753
No 17
>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase. VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer.
Probab=99.56 E-value=1.7e-14 Score=92.56 Aligned_cols=70 Identities=27% Similarity=0.508 Sum_probs=66.6
Q ss_pred HHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHHhc
Q psy10337 17 VEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIERN 86 (87)
Q Consensus 17 ~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~~~ 86 (87)
....++.+|+++++.+.++++.++|++||.||+++++++++|||++...+++|++++++++|++.+|++.
T Consensus 339 ~~~~~~~aK~~a~~~a~~v~~~a~~~~Gg~G~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~ia~~~l~~~ 408 (409)
T cd01161 339 YQIEAAISKVFASEAAWLVVDEAIQIHGGMGFMREYGVERVLRDLRIFRIFEGTNEILRLFIALTGLQHA 408 (409)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCcHHHHHHhhhcceeecCHHHHHHHHHHHHHhhhC
Confidence 4567899999999999999999999999999999999999999999999999999999999999998764
No 18
>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2. FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=99.56 E-value=1.4e-14 Score=92.54 Aligned_cols=67 Identities=21% Similarity=0.285 Sum_probs=63.9
Q ss_pred HHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHH
Q psy10337 17 VEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 83 (87)
Q Consensus 17 ~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l 83 (87)
....++++|+++++.+.+++..++|++||.||+++++++++|||++..++++|++|+++++|++.++
T Consensus 327 ~~~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~~l~r~~Rda~~~~i~~Gt~~~~~~~ia~~~~ 393 (394)
T cd01155 327 ARKEIAMIKVAAPRMALKIIDRAIQVHGAAGVSQDTPLANMYAWARTLRIADGPDEVHLRSIARMEL 393 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCceecCCCHHHHHHHHHhhceeecCHHHHHHHHHHHHHh
Confidence 4577899999999999999999999999999999999999999999999999999999999999875
No 19
>PLN02876 acyl-CoA dehydrogenase
Probab=99.55 E-value=1.7e-14 Score=99.10 Aligned_cols=69 Identities=17% Similarity=0.263 Sum_probs=65.9
Q ss_pred HHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHHh
Q psy10337 17 VEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIER 85 (87)
Q Consensus 17 ~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~~ 85 (87)
....++++|+++++.+..+++.++|+|||.||+++++++++|||++..++++|++|+++++|++.++++
T Consensus 751 ~~~~~a~aK~~a~e~a~~va~~a~qv~Gg~G~~~e~~l~r~~Rdar~~~i~~Gt~e~~~~~ia~~~~~~ 819 (822)
T PLN02876 751 ARGIIAMAKVAAPNMALKVLDMAMQVHGAAGVSSDTVLAHLWATARTLRIADGPDEVHLGTIAKLELQR 819 (822)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCcchHHHHHHhhhhcccccChHHHHHHHHHHHHHHh
Confidence 356799999999999999999999999999999999999999999999999999999999999999875
No 20
>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional
Probab=99.55 E-value=2.7e-14 Score=91.65 Aligned_cols=68 Identities=28% Similarity=0.440 Sum_probs=64.1
Q ss_pred HHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHHh
Q psy10337 18 EKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIER 85 (87)
Q Consensus 18 ~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~~ 85 (87)
....+++|.++++.+.++++.++|++||.||+++++++++|||++...+++|++|++++.|++.+++.
T Consensus 341 ~~~~~~aK~~a~~~a~~v~~~a~qv~Gg~G~~~~~~l~r~~Rda~~~~i~~Gt~e~~~~~i~~~~~~~ 408 (410)
T PTZ00461 341 RLGSDAAKLFATPIAKKVADSAIQVMGGMGYSRDMPVERLWRDAKLLEIGGGTIEAHHKNITKDLLKG 408 (410)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHHHhhheeccCHHHHHHHHHHHHHHhh
Confidence 45677899999999999999999999999999999999999999999999999999999999988764
No 21
>PLN02519 isovaleryl-CoA dehydrogenase
Probab=99.55 E-value=1.8e-14 Score=92.34 Aligned_cols=68 Identities=31% Similarity=0.594 Sum_probs=64.4
Q ss_pred HHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHHh
Q psy10337 18 EKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIER 85 (87)
Q Consensus 18 ~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~~ 85 (87)
....+.+|+++++.+.+++..+++++||.||+++++++++|||++...+++|++|+++++|++.+|++
T Consensus 336 ~~~~~~ak~~~~~~a~~~~~~a~~i~Gg~g~~~~~~l~r~~RD~~~~~~~~G~~e~~~~~i~~~~~~~ 403 (404)
T PLN02519 336 RKDCAGVILCAAERATQVALQAIQCLGGNGYINEYPTGRLLRDAKLYEIGAGTSEIRRMLIGRELFKE 403 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCceecCCChHHHHHHhhhcceeeCCHHHHHHHHHHHHHhhc
Confidence 45677889999999999999999999999999999999999999999999999999999999999875
No 22
>PTZ00460 acyl-CoA dehydrogenase; Provisional
Probab=99.54 E-value=2.1e-14 Score=96.46 Aligned_cols=70 Identities=19% Similarity=0.215 Sum_probs=66.5
Q ss_pred HHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHHhc
Q psy10337 17 VEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIERN 86 (87)
Q Consensus 17 ~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~~~ 86 (87)
....++++|.++++.+.++++.|+|+|||.||+++++++++++|++...+++|+++|++.+||+.+++.+
T Consensus 364 ~~~~as~aK~~~t~~a~~~~~~~~q~~GG~Gy~~~~~l~~~~rda~~~~t~eG~n~vl~~~iar~ll~~~ 433 (646)
T PTZ00460 364 THAILSAAKANYTYFVSNCAEWCRLSCGGHGYAHYSGLPAIYFDMSPNITLEGENQIMYLQLARYLLKQL 433 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCcHHHHHHHhccceeecCcHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999999999999999999988764
No 23
>cd01162 IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer.
Probab=99.53 E-value=3e-14 Score=90.43 Aligned_cols=68 Identities=40% Similarity=0.622 Sum_probs=64.5
Q ss_pred HHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHHh
Q psy10337 18 EKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIER 85 (87)
Q Consensus 18 ~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~~ 85 (87)
....+.+|+++++.+.++++.+++++||.||+++++++++|||++..++++|++|+++++|++.++++
T Consensus 308 ~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~~~~~~~~~ 375 (375)
T cd01162 308 VKLCAMAKRFATDECFDVANQALQLHGGYGYLKDYPVEQYVRDLRVHQILEGTNEIMRLIIARALLTR 375 (375)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCChHHHHHHHhhcceeecCHHHHHHHHHHHHHhcC
Confidence 45678899999999999999999999999999999999999999999999999999999999998864
No 24
>cd01160 LCAD Long chain acyl-CoA dehydrogenase. LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer.
Probab=99.50 E-value=8.1e-14 Score=88.25 Aligned_cols=65 Identities=26% Similarity=0.454 Sum_probs=62.0
Q ss_pred HHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHH
Q psy10337 18 EKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAI 82 (87)
Q Consensus 18 ~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~ 82 (87)
...++++|.++++.+.+++..+++++||.||+++++++++|||++...+++|++++++++|++.+
T Consensus 307 ~~~~~~aK~~~~~~a~~v~~~a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~gt~~~~~~~i~~~~ 371 (372)
T cd01160 307 VAEASMAKYWATELQNRVAYECVQLHGGWGYMREYPIARAYRDARVQPIYGGTTEIMKELISRQM 371 (372)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCceecCCCHHHHHHHHhhcccccCCHHHHHHHHHHHhh
Confidence 55788999999999999999999999999999999999999999999999999999999999864
No 25
>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=99.48 E-value=5.3e-14 Score=89.46 Aligned_cols=67 Identities=19% Similarity=0.206 Sum_probs=63.2
Q ss_pred HHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCC--------chHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHH
Q psy10337 18 EKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSD--------YPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIE 84 (87)
Q Consensus 18 ~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~--------~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~ 84 (87)
....+.+|+++++.+.+++..+++++||.||+++ +++++++||++...+++|++++++.+|++.++|
T Consensus 306 ~~~~a~aK~~~~~~a~~v~~~a~~i~Gg~g~~~~~~~~~~~~~~~~r~~rd~~~~~~~~g~~~~~~~~i~~~~~~ 380 (380)
T cd01152 306 GAEASIAKLFGSELAQELAELALELLGTAALLRDPAPGAELAGRWEADYLRSRATTIYGGTSEIQRNIIAERLLG 380 (380)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhcCccccccccccccccccHHHHHHHhCccceeeccHHHHHHHHHHHHhcC
Confidence 4567899999999999999999999999999988 799999999999999999999999999998875
No 26
>cd01156 IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.
Probab=99.48 E-value=1.4e-13 Score=87.24 Aligned_cols=67 Identities=34% Similarity=0.660 Sum_probs=62.9
Q ss_pred HHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHH
Q psy10337 18 EKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIE 84 (87)
Q Consensus 18 ~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~ 84 (87)
....+.+|+++++.+.+++..+++++||.||+++++++++|||++..++++|++++++++|++.+++
T Consensus 310 ~~~~~~~k~~~~~~a~~~~~~a~~~~Gg~g~~~~~~l~r~~Rda~~~~~~~gt~~~~~~~i~~~~~~ 376 (376)
T cd01156 310 PKDAAGVILYAAEKATQVALDAIQILGGNGYINDYPTGRLLRDAKLYEIGAGTSEIRRMVIGRELFK 376 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCHHHHHHHHhhcceecCCHHHHHHHHHHHHhhC
Confidence 4567788999999999999999999999999999999999999999999999999999999988764
No 27
>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit. Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=99.47 E-value=1e-13 Score=88.73 Aligned_cols=67 Identities=24% Similarity=0.292 Sum_probs=61.1
Q ss_pred HHHHHHhhhHhhHhHHHHHHHHHHH----------HhcCcccCC----chHHHHhhhhhhHHhhhCHHHHHHHHHHHHHH
Q psy10337 18 EKLMRDAKIYQIYEGTAQIQRLIVV----------FGGNGFNSD----YPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 83 (87)
Q Consensus 18 ~~~~~~aK~~~~~~~~~~~~~a~~~----------~G~~g~~~~----~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l 83 (87)
...++++|+++++.+..+++.++|+ |||+||+++ ++++++|||++..+|++|++|||+++|++.+|
T Consensus 314 ~~~aa~aK~~~~~~~~~~~~~a~q~~g~~~~~~~~~Gg~G~~~~~~~~~~~~~~~r~~~~~~i~~Gt~ei~~~~ia~~~l 393 (395)
T TIGR03204 314 NPASSVLKIKGSEIQQATTELLMEVIGPFAAPYDVHGDDGSNEAMDWTAQIAPSYFNNRKVSIYGGSNEIQRNIIAKAVL 393 (395)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccccchhhhHHHHHHHhccccceeccHHHHHHHHHHHHHc
Confidence 3579999999999999999999985 889999865 57999999999999999999999999999887
Q ss_pred H
Q psy10337 84 E 84 (87)
Q Consensus 84 ~ 84 (87)
+
T Consensus 394 ~ 394 (395)
T TIGR03204 394 G 394 (395)
T ss_pred C
Confidence 5
No 28
>cd01150 AXO Peroxisomal acyl-CoA oxidase. Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in the peroxisomal fatty acid beta-oxidation, the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. In a second oxidative half-reaction, the reduced FAD is reoxidized by molecular oxygen. AXO is generally a homodimer, but it has been reported to form a different type of oligomer in yeast. There are several subtypes of AXO's, based on substrate specificity. Palmitoyl-CoA oxidase acts on straight-chain fatty acids and prostanoids; whereas, the closely related Trihydroxycoprostanoly-CoA oxidase has the greatest activity for 2-methyl branched side chains of bile precursors. Pristanoyl-CoA oxidase, acts on 2-methyl branched fatty acids. AXO has an additional domain, C-terminal to the region with similarity to acyl-CoA dehydrogenases, which is included in this alignment.
Probab=99.45 E-value=1.7e-13 Score=91.76 Aligned_cols=71 Identities=17% Similarity=0.258 Sum_probs=67.2
Q ss_pred hHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHHhc
Q psy10337 16 PVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIERN 86 (87)
Q Consensus 16 ~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~~~ 86 (87)
+....++++|.++++.+.++++.|+|++||.||+.+++++++++|++...+++|+++++++.+++.+++.|
T Consensus 376 ~~~~~aa~~K~~~t~~a~~~~~~~rq~~GG~Gy~~~~~l~~l~~d~~~~~t~EG~n~vl~~~iar~ll~~~ 446 (610)
T cd01150 376 ELHALSAGLKAVATWTAAQGIQECREACGGHGYLAMNRLPTLRDDNDPFCTYEGDNTVLLQQTANYLLKKY 446 (610)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhcChHHHHhhccceeeeecchHhHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999988764
No 29
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed
Probab=99.45 E-value=6.3e-14 Score=95.50 Aligned_cols=66 Identities=20% Similarity=0.172 Sum_probs=60.6
Q ss_pred CCChHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCC--chHHHHhhhhhhHHhhhCHHHHHHHHH
Q psy10337 13 SDYPVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSD--YPVEKLMRDAKIYQIYEGTAQIQRLIV 78 (87)
Q Consensus 13 ~~~~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~--~~~~~~~~~~~~~~i~~g~~~~~~~~i 78 (87)
.+......++++|+++++.+..+++.++|+|||.||+++ ++++++|||+++..|++|+++++|+.|
T Consensus 399 ~G~~~~~~aA~AK~~atE~a~~va~~AmQIhGG~G~~~~~~~~leR~yRdari~~i~eGtn~i~r~~i 466 (777)
T PRK09463 399 LGEKPSVLSAIAKYHLTERGRQVINDAMDIHGGKGICLGPNNFLARAYQAAPIAITVEGANILTRSLM 466 (777)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhchhheeCCCCChHHHHHHhCcchheeCcHHHHHHHHH
Confidence 333346788999999999999999999999999999987 899999999999999999999999987
No 30
>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product. AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates.
Probab=99.45 E-value=1.9e-13 Score=88.02 Aligned_cols=63 Identities=35% Similarity=0.569 Sum_probs=60.3
Q ss_pred HHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHH
Q psy10337 20 LMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAI 82 (87)
Q Consensus 20 ~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~ 82 (87)
..+++|+++++.+.++++.++|++||.||+++++++++|||+++.+|++||+|||+..+.+.+
T Consensus 354 ~~~~aK~~~~e~a~~v~~~a~~i~Gg~G~~~~~~l~r~~RDa~~~~i~~Gt~~i~~~~~~r~~ 416 (418)
T cd01154 354 ATPVAKLIACKRAAPVTSEAMEVFGGNGYLEEWPVARLHREAQVTPIWEGTGNIQALDVLRVL 416 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcEEcCCChHHHHHhcCcCcceeccHHHHHHHHHHHHh
Confidence 578899999999999999999999999999999999999999999999999999999998865
No 31
>PLN02443 acyl-coenzyme A oxidase
Probab=99.45 E-value=2.5e-13 Score=91.55 Aligned_cols=70 Identities=17% Similarity=0.176 Sum_probs=65.8
Q ss_pred HHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHHhc
Q psy10337 17 VEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIERN 86 (87)
Q Consensus 17 ~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~~~ 86 (87)
....++++|.++++.+.++++.|+|+|||.||+.+++++++++|++...+++|+++++++++++.+++.+
T Consensus 373 ~h~~aa~~Ka~~t~~a~~~i~~~rq~cGG~Gy~~~~~l~~l~~d~~~~~t~EGdn~Vl~~~iar~ll~~~ 442 (664)
T PLN02443 373 AHACTAGLKSLTTSATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNVVLLLQVARFLMKTV 442 (664)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCccccccCcHHHHHhhhhcceeecCcHHHHHHHHHHHHHHHH
Confidence 3456899999999999999999999999999999999999999999999999999999999999888754
No 32
>cd01159 NcnH Naphthocyclinone hydroxylase. Naphthocyclinone is an aromatic polyketide and an antibiotic, which is active against Gram-positive bacteria. Polyketides are secondary metabolites, which have important biological functions such as antitumor, immunosupressive or antibiotic activities. NcnH is a hydroxylase involved in the biosynthesis of naphthocyclinone and possibly other polyketides.
Probab=99.44 E-value=2.9e-13 Score=85.83 Aligned_cols=67 Identities=16% Similarity=0.271 Sum_probs=63.8
Q ss_pred HHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHH-HHHHHHHHHHHHH
Q psy10337 18 EKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTA-QIQRLIVSRAIIE 84 (87)
Q Consensus 18 ~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~-~~~~~~ia~~~l~ 84 (87)
...++++|.++++.+.++++.+++++|+.||.++++++++|||++...+++|++ |++++.|++.+|+
T Consensus 303 ~~~~~~aK~~~~e~~~~~~~~a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~~~~~~~~~~~~~~~~l~ 370 (370)
T cd01159 303 RARIRRDAAYAAKLSAEAVDRLFHAAGGSALYTASPLQRIWRDIHAAAQHAALNPETAAEAYGRALLG 370 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccCCcHHHHHHHHHHHhhhhccCcchHHHHHHHHhcC
Confidence 456888999999999999999999999999999999999999999999999999 9999999999875
No 33
>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.
Probab=99.44 E-value=4.7e-13 Score=84.71 Aligned_cols=69 Identities=39% Similarity=0.708 Sum_probs=64.8
Q ss_pred hHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHH
Q psy10337 16 PVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIE 84 (87)
Q Consensus 16 ~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~ 84 (87)
+.....+.+|+++++.+.+++..+++++|+.||+++++++++|||++...+++|++|++++.|++.+|+
T Consensus 305 ~~~~~~~~~k~~~~~~a~~~~~~~~~~~G~~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~i~~~~~~ 373 (373)
T cd01158 305 PFIKEAAMAKLFASEVAMRVTTDAVQIFGGYGYTKDYPVERYYRDAKITEIYEGTSEIQRLVIAKHLLK 373 (373)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHhhcCccCCCCChHHHHHHHhhhccccCCHHHHHHHHHHHHHhC
Confidence 345678889999999999999999999999999999999999999999999999999999999999875
No 34
>PRK13026 acyl-CoA dehydrogenase; Reviewed
Probab=99.43 E-value=3.2e-13 Score=92.04 Aligned_cols=63 Identities=13% Similarity=0.082 Sum_probs=58.9
Q ss_pred hHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCC--chHHHHhhhhhhHHhhhCHHHHHHHHH
Q psy10337 16 PVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSD--YPVEKLMRDAKIYQIYEGTAQIQRLIV 78 (87)
Q Consensus 16 ~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~--~~~~~~~~~~~~~~i~~g~~~~~~~~i 78 (87)
.....++++|+++++.+..+++.++|+|||.||+++ ++++++|||+++..|++|+++++|+.+
T Consensus 401 ~~~~~aA~AK~~atE~a~~va~~AmQIhGG~Gy~~e~~~~ler~yRdari~~i~eGtnei~R~l~ 465 (774)
T PRK13026 401 KPSVVTAIAKYHMTELARDVVNDAMDIHAGKGIQLGPKNYLGHAYMAVPIAITVEGANILTRNLM 465 (774)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhchheeeCCCCChHHHHHHHhhhhheeCcHHHHHHHHH
Confidence 346788999999999999999999999999999998 899999999999999999999999854
No 35
>KOG0137|consensus
Probab=99.42 E-value=2.3e-13 Score=89.26 Aligned_cols=68 Identities=31% Similarity=0.489 Sum_probs=63.8
Q ss_pred hHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHH
Q psy10337 16 PVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 83 (87)
Q Consensus 16 ~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l 83 (87)
+...+.++.|+++.+.++.++..++|++||+||+.++++++.+||++.++|++|++||++..||..-+
T Consensus 392 d~~lEaai~Ki~a~e~a~~v~se~iqi~Gg~g~m~d~g~Er~LRD~ri~~I~egtndvLrlfiAltg~ 459 (634)
T KOG0137|consen 392 DVQLEAAILKIFASEQAWAVVSEAIQIVGGMGYMRDTGLERLLRDARILRIFEGTNDVLRLFIALTGL 459 (634)
T ss_pred eeeehHHHHHHHhhhHHHHHHHhhhheeccccccccCchHHHhhhhheeeeecCchhHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999987644
No 36
>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5. Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=99.34 E-value=2.5e-12 Score=82.56 Aligned_cols=63 Identities=37% Similarity=0.631 Sum_probs=58.0
Q ss_pred HHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHH-HHHH
Q psy10337 18 EKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRL-IVSR 80 (87)
Q Consensus 18 ~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~-~ia~ 80 (87)
....+++|+++++.+.+++..+++++||.||.++++++++|||++...+++|+++++++ .|++
T Consensus 341 ~~~~~~aK~~~~~~a~~v~~~a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~Gt~~~~~~~~~~~ 404 (407)
T cd01153 341 DLLTPVVKGFGSEAALEAVSDAIQVHGGSGYTREYPIEQYYRDARITTIYEGTTGIQALDLIGR 404 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCceecCCCcHHHHHHhhhhheeecChHHHHHHHHhhc
Confidence 34567899999999999999999999999999999999999999999999999999987 5544
No 37
>cd00567 ACAD Acyl-CoA dehydrogenase. Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isob
Probab=99.20 E-value=3.7e-11 Score=74.81 Aligned_cols=64 Identities=36% Similarity=0.611 Sum_probs=60.1
Q ss_pred HHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHH
Q psy10337 17 VEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSR 80 (87)
Q Consensus 17 ~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~ 80 (87)
.....+.+|.++++.+..+++.+++++||.||+++++++++|||++...+++|++++++..+++
T Consensus 264 ~~~~~~~~k~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rd~~~~~~~~G~~~~~~~~~~~ 327 (327)
T cd00567 264 ARLEAAMAKLFATEAAREVADLAMQIHGGRGYSREYPVERYLRDARAARIAEGTAEIQRLIIAR 327 (327)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHccCccccCCCHHHHHHHhhhcceeecCHHHHHHHHhcC
Confidence 4567889999999999999999999999999999999999999999999999999999988763
No 38
>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C. DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.
Probab=99.03 E-value=4.9e-10 Score=71.30 Aligned_cols=66 Identities=14% Similarity=0.114 Sum_probs=56.2
Q ss_pred HHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHH
Q psy10337 17 VEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 83 (87)
Q Consensus 17 ~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l 83 (87)
....++++|+++++.+.++++.++|++|+.||+++++++++|||++...+++..+ -+..+++..++
T Consensus 307 ~~~~~~~aK~~~~~~a~~~~~~a~q~~Gg~g~~~~~~l~r~~Rd~~~~~~h~~~~-~~~~~~~~~~~ 372 (377)
T cd01163 307 AALAVAAAKVVVTRLALDATSRLFEVGGASATAREHNLDRHWRNARTHTLHNPVI-YKERAVGDYAL 372 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhccccCCcchhhhhhhhhccCHHH-HHHHHhchhhc
Confidence 3567889999999999999999999999999999999999999999999887664 44455555544
No 39
>PTZ00457 acyl-CoA dehydrogenase; Provisional
Probab=98.68 E-value=1.9e-08 Score=66.77 Aligned_cols=59 Identities=5% Similarity=-0.024 Sum_probs=49.8
Q ss_pred ccccCC-ChHHHHHHHhhhHhh---HhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHH
Q psy10337 9 NGFNSD-YPVEKLMRDAKIYQI---YEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR 75 (87)
Q Consensus 9 ~g~~~~-~~~~~~~~~aK~~~~---~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~ 75 (87)
+-++.+ .+...+++++|+|++ +....+++.++| +++|+++.+||+|..+|++||+|+++
T Consensus 300 ~~~D~g~~d~~~eAa~ak~~~s~~~e~~~~~~~~~~~--------~~~~~E~~~rd~ri~~i~egs~~~l~ 362 (520)
T PTZ00457 300 ANLDLPTEDSLLECTLVSAFVQSTTNQLLSILETATP--------PSTTLEKCFANARLFLSMMESRDFLY 362 (520)
T ss_pred HHHhCCCcccHHHHHHHHHHhhhhHHHHHHHhhhhcc--------CCccHHHHHHHHHHHHHhhhHHHHHH
Confidence 334444 356789999999999 777777777766 79999999999999999999999998
No 40
>KOG0138|consensus
Probab=98.45 E-value=2.3e-07 Score=57.94 Aligned_cols=75 Identities=23% Similarity=0.286 Sum_probs=69.7
Q ss_pred ccCCChHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHHh
Q psy10337 11 FNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIER 85 (87)
Q Consensus 11 ~~~~~~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~~ 85 (87)
++.+...+..++..|-+.+..+.+++.++.+++||.|..+|+.+.+++.+.-....|+||.||+-.++++.+.+-
T Consensus 353 kd~g~~tp~qiSl~Krn~~gKaleiAr~~RdmLGgNGI~deyhv~rh~~nLE~vnTYEGThDihaLilGRaiTGi 427 (432)
T KOG0138|consen 353 KDQGKATPEQISLLKRNNCGKALEIARQARDMLGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHALILGRAITGI 427 (432)
T ss_pred hhcccCChhhhHHHhhccchhHHHHHHHHHHHhcCCcchhHHHHHHHHcCccceecccccchHHHHhhhhhhhhh
Confidence 466677788999999999999999999999999999999999999999999999999999999999999987653
No 41
>KOG1469|consensus
Probab=98.40 E-value=3.3e-08 Score=60.83 Aligned_cols=69 Identities=22% Similarity=0.335 Sum_probs=63.3
Q ss_pred hHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHH
Q psy10337 16 PVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIE 84 (87)
Q Consensus 16 ~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~ 84 (87)
....+++|.|+.++..+..+.+.|+|++||.|.+.++|+..+|.-++..+|.+|+.++++..|++.-+.
T Consensus 314 ~Ak~~iAMiKv~AP~ma~kilD~AiQ~~G~aG~s~~~~la~l~~~~r~lriadgPd~vhL~ai~~le~~ 382 (392)
T KOG1469|consen 314 GAKKEIAMIKVAAPNMASKILDRAIQVQGGAGVSSDTPLANLYAIARVLRIADGPDEVHLSAIAKLELR 382 (392)
T ss_pred hhhhheeeeeecCcHHHHHHHHHHHHHhcCCCCCCCceeeEEEEEeeeEEeccCCCccchhhhhhhhHH
Confidence 345678999999999999999999999999999999999999999999999999999999999886543
No 42
>PF08028 Acyl-CoA_dh_2: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR013107 Acyl Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3AFE_C 3AFF_A 2JBT_D 2JBS_C 2JBR_B 2RFQ_B 2OR0_B.
Probab=98.26 E-value=2.3e-06 Score=47.43 Aligned_cols=53 Identities=21% Similarity=0.292 Sum_probs=47.6
Q ss_pred HHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCH
Q psy10337 18 EKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGT 70 (87)
Q Consensus 18 ~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~ 70 (87)
.......|.++.+.+.++++.++++.|+.++...+|++|+|||.+....+...
T Consensus 80 ~~~~~~~~~~a~~~a~~av~~l~~~~G~~a~~~~~pl~R~~RD~~~~~~H~~~ 132 (134)
T PF08028_consen 80 RARLRAAKAHAARLAREAVDRLFRLAGGSALYRSSPLERIWRDVRAGAQHPAL 132 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCSGGGGGBTTSHHHHHHHHHHHHTTSGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhChHhhhcCCcHHHHHHHHHHHhhCccc
Confidence 45577789999999999999999999999999999999999999998877654
No 43
>KOG0135|consensus
Probab=98.26 E-value=4.5e-07 Score=60.20 Aligned_cols=73 Identities=19% Similarity=0.299 Sum_probs=68.5
Q ss_pred ChHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHHhcC
Q psy10337 15 YPVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIERNS 87 (87)
Q Consensus 15 ~~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~~~~ 87 (87)
..+...++-+|-+.+....+..+.|.+.+||+||..++.+..+-.|--..+.++|.|.|+.+++++.+|++|.
T Consensus 395 keiHALsSg~K~~~TW~~~~~LqecREAcGGhGYl~~nRlg~Lr~D~D~~~TfEGDNnVLlQqvsn~LL~~y~ 467 (661)
T KOG0135|consen 395 KEIHALSSGLKPVATWHNMRALQECREACGGHGYLQENRLGQLRDDHDPFQTFEGDNNVLLQQVSNALLAQYV 467 (661)
T ss_pred hHHHHHHhccchhhhHhhHHHHHHHHHHhccchHHHHHHhcccccCCCccceeecCceeHHHHHHHHHHHHHH
Confidence 5677889999999999999999999999999999999999999999999999999999999999999999873
No 44
>KOG0136|consensus
Probab=97.88 E-value=6.1e-06 Score=55.72 Aligned_cols=71 Identities=18% Similarity=0.273 Sum_probs=65.5
Q ss_pred hHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCchHHHHhhhhhhHHhhhCHHHHHHHHHHHHHHHhc
Q psy10337 16 PVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIERN 86 (87)
Q Consensus 16 ~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ia~~~l~~~ 86 (87)
+.....+-.|..++....+.++.|...+||+||++-..+..+|-.+.....|+|.|-|+..++|+-+++.|
T Consensus 380 eLHaLS~gLKa~~T~~~~~GIE~~R~aCGGHGYs~~Sglp~iY~~~v~~CTYEGEN~VmlLQ~ARfLmKs~ 450 (670)
T KOG0136|consen 380 ELHALSAGLKAVVTWDTAQGIEQCRLACGGHGYSQASGLPEIYGVAVGACTYEGENTVLLLQVARFLVKSY 450 (670)
T ss_pred HHHHHHhhhHHHhhhhhhhHHHHHHHhcCCccchhhcCCccceeeeeeeeeeeccceeehHHHHHHHHHHH
Confidence 34667888999999999999999999999999999999999999999999999999999999999887754
No 45
>KOG0140|consensus
Probab=97.62 E-value=5.7e-05 Score=47.58 Aligned_cols=39 Identities=79% Similarity=1.328 Sum_probs=35.8
Q ss_pred cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHHHH
Q psy10337 2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLI 40 (87)
Q Consensus 2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~a~ 40 (87)
++||+||+||..++|.+.+.+++|++....+++.+++.+
T Consensus 359 AvQifGG~Gfn~eYpVeklmRDaki~QIyEGTsqiqRlv 397 (408)
T KOG0140|consen 359 AVQIFGGNGFNKEYPVEKLMRDAKIYQIYEGTSQIQRLV 397 (408)
T ss_pred HHHhhccCCccccccHHHHHhhhhhhHhhhchHHHHHHH
Confidence 579999999999999999999999999999998877654
No 46
>KOG0141|consensus
Probab=97.38 E-value=6.8e-05 Score=47.32 Aligned_cols=39 Identities=46% Similarity=0.937 Sum_probs=36.0
Q ss_pred cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHHHH
Q psy10337 2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLI 40 (87)
Q Consensus 2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~a~ 40 (87)
|+|++||+||..++|..+..+++|++....+++.+++-+
T Consensus 374 ~iQ~~GGnGYineyp~gr~lrDAklyeIgaGTsEirr~l 412 (421)
T KOG0141|consen 374 AIQCLGGNGYINEYPTGRLLRDAKLYEIGAGTSEIRRLL 412 (421)
T ss_pred HHhhccCcccccccchhhhhhhceeeeccCChHHHHHHH
Confidence 689999999999999999999999999999999887643
No 47
>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit. Members of this protein family are the PimD proteins of species such as Rhodopseudomonas palustris, Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=96.88 E-value=0.00077 Score=43.44 Aligned_cols=38 Identities=13% Similarity=0.226 Sum_probs=34.7
Q ss_pred cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHHH
Q psy10337 2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRL 39 (87)
Q Consensus 2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~a 39 (87)
|+|+||+.||+.+++++++++.+|.+....+.+..+..
T Consensus 333 aiqi~Gg~G~t~e~~~~~~~r~a~~~~~~~G~~~~~~~ 370 (378)
T TIGR03203 333 SIQLHGGIGMTMEAKIGHYFKRLTMIEHTFGDTDFHLS 370 (378)
T ss_pred HHHhccceeecccchHHHHHHHHHHHHHhcCCHHHHHH
Confidence 68999999999999999999999999999998877654
No 48
>PRK13026 acyl-CoA dehydrogenase; Reviewed
Probab=96.60 E-value=0.0016 Score=45.67 Aligned_cols=50 Identities=18% Similarity=0.286 Sum_probs=43.2
Q ss_pred cccccccccccCC--ChHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccCCc
Q psy10337 2 SHGVFGGNGFNSD--YPVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDY 52 (87)
Q Consensus 2 ~~~i~g~~g~~~~--~~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~~~ 52 (87)
|+|+|||.||+.+ +++++.++.+|+..+..+.++..+.+-++| .|.++=+
T Consensus 424 AmQIhGG~Gy~~e~~~~ler~yRdari~~i~eGtnei~R~l~ifg-qga~rch 475 (774)
T PRK13026 424 AMDIHAGKGIQLGPKNYLGHAYMAVPIAITVEGANILTRNLMIFG-QGATRCH 475 (774)
T ss_pred HHHhhchheeeCCCCChHHHHHHHhhhhheeCcHHHHHHHHHHhh-ccHhhCC
Confidence 6899999999988 889999999999999999999999998887 4444433
No 49
>PTZ00456 acyl-CoA dehydrogenase; Provisional
Probab=96.53 E-value=0.0046 Score=42.59 Aligned_cols=36 Identities=42% Similarity=0.751 Sum_probs=33.4
Q ss_pred cccccccccccCCChHHHHHHHhhhHhhHhHHHHHH
Q psy10337 2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQ 37 (87)
Q Consensus 2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~ 37 (87)
++|+|||.||.+++++++.++++|+.....+++.++
T Consensus 434 aiQv~GG~Gy~~e~~ler~~RDari~~i~eGt~~iq 469 (622)
T PTZ00456 434 CLQVWGGHGYIKGNGMEQILRDARIGTLYEGTTGIQ 469 (622)
T ss_pred HHHhccCCCccCCchHHHHHHHhhcccccCChHHHH
Confidence 689999999999999999999999999999987765
No 50
>PRK11561 isovaleryl CoA dehydrogenase; Provisional
Probab=96.25 E-value=0.0029 Score=42.86 Aligned_cols=36 Identities=28% Similarity=0.602 Sum_probs=32.7
Q ss_pred cccccccccccCCChHHHHHHHhhhHhhHhHHHHHH
Q psy10337 2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQ 37 (87)
Q Consensus 2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~ 37 (87)
|+|+|||.||.+++++++.++++++.....++..++
T Consensus 396 Amqv~GG~Gy~ee~~lerl~RDa~v~~I~eGt~~i~ 431 (538)
T PRK11561 396 AMEVLGGIGYCEESELPRLYREMPVNSIWEGSGNIM 431 (538)
T ss_pred HHHhcCCccCCCCcHHHHHHHHHhhhhcccCCHHHH
Confidence 689999999999999999999999999888877654
No 51
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed
Probab=96.18 E-value=0.0028 Score=44.61 Aligned_cols=43 Identities=23% Similarity=0.427 Sum_probs=39.2
Q ss_pred cccccccccccCC--ChHHHHHHHhhhHhhHhHHHHHHHHHHHHh
Q psy10337 2 SHGVFGGNGFNSD--YPVEKLMRDAKIYQIYEGTAQIQRLIVVFG 44 (87)
Q Consensus 2 ~~~i~g~~g~~~~--~~~~~~~~~aK~~~~~~~~~~~~~a~~~~G 44 (87)
|+|+|||.||..+ +++++.++++++..+..+.+...+.+-++|
T Consensus 425 AmQIhGG~G~~~~~~~~leR~yRdari~~i~eGtn~i~r~~iifg 469 (777)
T PRK09463 425 AMDIHGGKGICLGPNNFLARAYQAAPIAITVEGANILTRSLMIFG 469 (777)
T ss_pred HHHHhchhheeCCCCChHHHHHHhCcchheeCcHHHHHHHHHHcC
Confidence 6899999999987 889999999999999999999888887765
No 52
>KOG0139|consensus
Probab=95.38 E-value=0.0024 Score=40.98 Aligned_cols=32 Identities=50% Similarity=0.899 Sum_probs=29.1
Q ss_pred cccccccccccCCChHHHHHHHhhhHhhHhHH
Q psy10337 2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGT 33 (87)
Q Consensus 2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~ 33 (87)
|+|+.||.||+.|.|.++.++++|+.....++
T Consensus 365 Ciq~lGG~Gyt~d~paek~yRDarI~~IyeGt 396 (398)
T KOG0139|consen 365 CIQWLGGVGYTKDFPAEKFYRDARIGEIYEGT 396 (398)
T ss_pred HHHHHhcccccccccHHHHhhhceeeeeecCC
Confidence 78999999999999999999999998876654
No 53
>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism]
Probab=95.25 E-value=0.015 Score=37.48 Aligned_cols=38 Identities=55% Similarity=1.016 Sum_probs=33.8
Q ss_pred cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHHH
Q psy10337 2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRL 39 (87)
Q Consensus 2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~a 39 (87)
++|+||+.||..+++++++.+.++......+++..+..
T Consensus 343 a~q~~Gg~g~~~e~~i~r~~rda~~~~i~~Gt~~i~~~ 380 (393)
T COG1960 343 AVQVHGGYGYTEEYPVERYYRDARILRIYEGTSEIQRL 380 (393)
T ss_pred HHHHhcCCccccCchHHHHHHHhHhheeccCHHHHHHH
Confidence 68999999999999999999999999988888776553
No 54
>cd01157 MCAD Medium chain acyl-CoA dehydrogenase. MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer.
Probab=94.62 E-value=0.028 Score=36.12 Aligned_cols=37 Identities=84% Similarity=1.355 Sum_probs=33.5
Q ss_pred cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHH
Q psy10337 2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR 38 (87)
Q Consensus 2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~ 38 (87)
++|++|+.||+.++++++.++.++......+....+.
T Consensus 332 a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~ 368 (378)
T cd01157 332 AVQIFGGNGFNSEYPVEKLMRDAKIYQIYEGTSQIQR 368 (378)
T ss_pred HHHHhCCCccCCCCHHHHHHHHHhhceecCCHHHHHH
Confidence 6899999999999999999999999999888877665
No 55
>PF00441 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006090 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0055114 oxidation-reduction process; PDB: 2EBA_A 1RX0_C 1R2J_A 2OKU_A 3MKH_C 2JIF_C 3GQT_D 3EON_D 3EOM_C 3D6B_A ....
Probab=94.54 E-value=0.024 Score=31.43 Aligned_cols=38 Identities=42% Similarity=0.842 Sum_probs=33.7
Q ss_pred cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHHH
Q psy10337 2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRL 39 (87)
Q Consensus 2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~a 39 (87)
+++++|+.|+.+++++++..+.++.+....+.+.+...
T Consensus 106 ~~~l~G~~g~~~~~~l~~~~rda~~~~i~~G~~ev~~~ 143 (150)
T PF00441_consen 106 AMQLLGGRGLTEDNPLERLYRDARAFTIYGGTNEVQRN 143 (150)
T ss_dssp HHHHHGGGGGBTTSSHHHHHHHHHHGGTSTSTHHHHHH
T ss_pred hhhhhhhhhhcccCHHHHHHhhcceeeeccCCHHHHHH
Confidence 57899999999999999999999999998888877653
No 56
>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional
Probab=94.45 E-value=0.035 Score=36.21 Aligned_cols=37 Identities=43% Similarity=0.728 Sum_probs=33.9
Q ss_pred cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHH
Q psy10337 2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR 38 (87)
Q Consensus 2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~ 38 (87)
++|++|+.||..+++.++.++.++......+....+.
T Consensus 362 a~qv~Gg~G~~~~~~l~r~~Rda~~~~i~~Gt~e~~~ 398 (410)
T PTZ00461 362 AIQVMGGMGYSRDMPVERLWRDAKLLEIGGGTIEAHH 398 (410)
T ss_pred HHHHhcCcccCCCCHHHHHHHHHhhheeccCHHHHHH
Confidence 6799999999999999999999999999998888765
No 57
>cd01151 GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.
Probab=94.39 E-value=0.032 Score=36.03 Aligned_cols=37 Identities=30% Similarity=0.613 Sum_probs=32.7
Q ss_pred cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHH
Q psy10337 2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR 38 (87)
Q Consensus 2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~ 38 (87)
++|++|+.||.+++++++.+++++......+.+..+.
T Consensus 337 a~~~~Gg~g~~~~~~l~r~~RD~~~~~~~~G~~~~~~ 373 (386)
T cd01151 337 AREMLGGNGISDEYHIIRHMVNLESVNTYEGTHDIHA 373 (386)
T ss_pred HHHHhcCCccCCCCHHHHHHHhhhcceecCCHHHHHH
Confidence 6799999999999999999999999999888766543
No 58
>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2. FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=94.34 E-value=0.031 Score=36.23 Aligned_cols=37 Identities=22% Similarity=0.418 Sum_probs=34.0
Q ss_pred cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHH
Q psy10337 2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR 38 (87)
Q Consensus 2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~ 38 (87)
++|++|+.||..++++++..+.+|.+....+...++.
T Consensus 349 a~~~~Gg~g~~~~~~l~r~~Rda~~~~i~~Gt~~~~~ 385 (394)
T cd01155 349 AIQVHGAAGVSQDTPLANMYAWARTLRIADGPDEVHL 385 (394)
T ss_pred HHHHhcCceecCCCHHHHHHHHHhhceeecCHHHHHH
Confidence 6789999999999999999999999999998887765
No 59
>PLN02876 acyl-CoA dehydrogenase
Probab=94.29 E-value=0.039 Score=39.23 Aligned_cols=37 Identities=24% Similarity=0.408 Sum_probs=34.4
Q ss_pred cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHH
Q psy10337 2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR 38 (87)
Q Consensus 2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~ 38 (87)
++|+||+.||+.++++++.++.+|......+....+.
T Consensus 773 a~qv~Gg~G~~~e~~l~r~~Rdar~~~i~~Gt~e~~~ 809 (822)
T PLN02876 773 AMQVHGAAGVSSDTVLAHLWATARTLRIADGPDEVHL 809 (822)
T ss_pred HHHhcCCCccCCcchHHHHHHhhhhcccccChHHHHH
Confidence 6899999999999999999999999999999887776
No 60
>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase. Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase.
Probab=94.29 E-value=0.033 Score=35.78 Aligned_cols=36 Identities=33% Similarity=0.492 Sum_probs=33.2
Q ss_pred cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHH
Q psy10337 2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR 38 (87)
Q Consensus 2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~ 38 (87)
++|+||+.||+.+ ++++.+++++......+.+.++.
T Consensus 329 a~~v~Gg~g~~~~-~l~r~~rd~~~~~i~~Gt~~~~~ 364 (372)
T TIGR03207 329 CLLTHGHGGYDRG-DMEQRLRDVLGFQIGDGTAQIMK 364 (372)
T ss_pred HHHHhcCCcCCCc-hHHHHHhHhhheeecCCHHHHHH
Confidence 6899999999999 99999999999999999988776
No 61
>cd01162 IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer.
Probab=94.15 E-value=0.037 Score=35.58 Aligned_cols=37 Identities=46% Similarity=0.820 Sum_probs=33.1
Q ss_pred cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHH
Q psy10337 2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR 38 (87)
Q Consensus 2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~ 38 (87)
++|+||+.||..+++..+..++++......+...+..
T Consensus 329 ~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~ 365 (375)
T cd01162 329 ALQLHGGYGYLKDYPVEQYVRDLRVHQILEGTNEIMR 365 (375)
T ss_pred HHHHhcccccccCChHHHHHHHhhcceeecCHHHHHH
Confidence 6789999999999999999999999999888876665
No 62
>PLN02636 acyl-coenzyme A oxidase
Probab=93.90 E-value=0.041 Score=38.51 Aligned_cols=37 Identities=24% Similarity=0.477 Sum_probs=34.2
Q ss_pred cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHH
Q psy10337 2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR 38 (87)
Q Consensus 2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~ 38 (87)
|+|+|||.||..++++++..++++...+..|.+.+..
T Consensus 440 ~rq~~GG~Gy~~~~~l~~l~rd~~~~~t~EG~n~Vl~ 476 (686)
T PLN02636 440 CREACGGHGYAAVNRFGSLRNDHDIFQTFEGDNTVLL 476 (686)
T ss_pred HHHHhcCCcccCcCcHHHHHHHhhhheeecChHHHHH
Confidence 6899999999999999999999999999999888765
No 63
>PLN02312 acyl-CoA oxidase
Probab=93.87 E-value=0.037 Score=38.68 Aligned_cols=37 Identities=19% Similarity=0.434 Sum_probs=33.9
Q ss_pred cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHH
Q psy10337 2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR 38 (87)
Q Consensus 2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~ 38 (87)
|+|+|||.||..+.++++..+.++...+..|.+.+..
T Consensus 442 ~rq~~GG~Gy~~~~~l~~l~rd~~~~~t~EG~n~Vl~ 478 (680)
T PLN02312 442 CREACGGQGLKTENRVGQLKAEYDVQSTFEGDNNVLM 478 (680)
T ss_pred HHHHhcCccccccCcHHHHHHhhhhheeecCcHHHHH
Confidence 7899999999999999999999999999888887765
No 64
>PLN02526 acyl-coenzyme A oxidase
Probab=93.80 E-value=0.029 Score=36.68 Aligned_cols=37 Identities=35% Similarity=0.554 Sum_probs=32.7
Q ss_pred cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHH
Q psy10337 2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR 38 (87)
Q Consensus 2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~ 38 (87)
++|+||+.||.+++++++..++++......+...++.
T Consensus 353 a~~~~Gg~G~~~~~~l~r~~RD~~~~~~~~G~~ev~~ 389 (412)
T PLN02526 353 GRELLGGNGILADFLVAKAFCDLEPIYTYEGTYDINA 389 (412)
T ss_pred HHHHhcCccccCcCHHHHHHhcccceEecCCHHHHHH
Confidence 6899999999999999999999999998888766544
No 65
>PTZ00460 acyl-CoA dehydrogenase; Provisional
Probab=93.53 E-value=0.041 Score=38.23 Aligned_cols=37 Identities=22% Similarity=0.231 Sum_probs=33.7
Q ss_pred cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHH
Q psy10337 2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR 38 (87)
Q Consensus 2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~ 38 (87)
|+|+|||.||..+.++++..+.++...+..|.+.+..
T Consensus 386 ~~q~~GG~Gy~~~~~l~~~~rda~~~~t~eG~n~vl~ 422 (646)
T PTZ00460 386 CRLSCGGHGYAHYSGLPAIYFDMSPNITLEGENQIMY 422 (646)
T ss_pred HHHHhCCccccccCcHHHHHHHhccceeecCcHHHHH
Confidence 6899999999999999999999999999888887654
No 66
>cd01160 LCAD Long chain acyl-CoA dehydrogenase. LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer.
Probab=93.37 E-value=0.061 Score=34.46 Aligned_cols=37 Identities=35% Similarity=0.757 Sum_probs=32.7
Q ss_pred cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHH
Q psy10337 2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR 38 (87)
Q Consensus 2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~ 38 (87)
+++++|+.||..+++.++..++++......+++.+..
T Consensus 328 a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~gt~~~~~ 364 (372)
T cd01160 328 CVQLHGGWGYMREYPIARAYRDARVQPIYGGTTEIMK 364 (372)
T ss_pred HHHHhcCceecCCCHHHHHHHHhhcccccCCHHHHHH
Confidence 6789999999999999999999999988787776654
No 67
>PLN02519 isovaleryl-CoA dehydrogenase
Probab=93.34 E-value=0.057 Score=35.16 Aligned_cols=37 Identities=46% Similarity=0.926 Sum_probs=33.2
Q ss_pred cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHH
Q psy10337 2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR 38 (87)
Q Consensus 2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~ 38 (87)
++|++|+.||..+++.++.+++++......+.+..+.
T Consensus 357 a~~i~Gg~g~~~~~~l~r~~RD~~~~~~~~G~~e~~~ 393 (404)
T PLN02519 357 AIQCLGGNGYINEYPTGRLLRDAKLYEIGAGTSEIRR 393 (404)
T ss_pred HHHHhCCceecCCChHHHHHHhhhcceeeCCHHHHHH
Confidence 5789999999999999999999999999888877665
No 68
>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated
Probab=93.27 E-value=0.067 Score=34.53 Aligned_cols=37 Identities=22% Similarity=0.491 Sum_probs=33.0
Q ss_pred cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHH
Q psy10337 2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR 38 (87)
Q Consensus 2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~ 38 (87)
++|++|+.||.+++++++.+++++......+.+....
T Consensus 332 ~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~ 368 (380)
T PRK03354 332 AMQVLGGVGIAGNHRISRFWRDLRVDRVSGGSDEMQI 368 (380)
T ss_pred HHHHhcCceecCCChHHHHHHHhhhhhccCCHHHHHH
Confidence 6899999999999999999999999998888776654
No 69
>cd01156 IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.
Probab=93.25 E-value=0.064 Score=34.39 Aligned_cols=37 Identities=49% Similarity=0.972 Sum_probs=33.3
Q ss_pred cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHH
Q psy10337 2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR 38 (87)
Q Consensus 2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~ 38 (87)
++|++|+.||..+++.++.++.++......+....+.
T Consensus 331 a~~~~Gg~g~~~~~~l~r~~Rda~~~~~~~gt~~~~~ 367 (376)
T cd01156 331 AIQILGGNGYINDYPTGRLLRDAKLYEIGAGTSEIRR 367 (376)
T ss_pred HHHHhcCcccccCCHHHHHHHHhhcceecCCHHHHHH
Confidence 5789999999999999999999999999888877665
No 70
>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit. Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=93.13 E-value=0.085 Score=34.34 Aligned_cols=37 Identities=27% Similarity=0.434 Sum_probs=30.3
Q ss_pred cccccccccccCCC----hHHHHHHHhhhHhhHhHHHHHHH
Q psy10337 2 SHGVFGGNGFNSDY----PVEKLMRDAKIYQIYEGTAQIQR 38 (87)
Q Consensus 2 ~~~i~g~~g~~~~~----~~~~~~~~aK~~~~~~~~~~~~~ 38 (87)
++|+||++||++++ +..+.+..+|.+....+++.++.
T Consensus 345 ~~~~~Gg~G~~~~~~~~~~~~~~~r~~~~~~i~~Gt~ei~~ 385 (395)
T TIGR03204 345 PYDVHGDDGSNEAMDWTAQIAPSYFNNRKVSIYGGSNEIQR 385 (395)
T ss_pred cccccccccccccchhhhHHHHHHHhccccceeccHHHHHH
Confidence 35789999998764 58888999899988888887776
No 71
>PRK12341 putative acyl-CoA dehydrogenase; Provisional
Probab=93.07 E-value=0.073 Score=34.33 Aligned_cols=37 Identities=27% Similarity=0.475 Sum_probs=33.5
Q ss_pred cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHH
Q psy10337 2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR 38 (87)
Q Consensus 2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~ 38 (87)
+++++|+.||.++++.++..++++......+.+.+..
T Consensus 333 ~~~~~Gg~g~~~~~~l~r~~RD~~~~~~~~g~~~~~~ 369 (381)
T PRK12341 333 AIQIMGGLGYTDEARVSRFWRDVRCERIGGGTDEIMI 369 (381)
T ss_pred HHHHhcCcccCCCCHHHHHHHHhhcceecCCHHHHHH
Confidence 5789999999999999999999999999888887764
No 72
>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C. DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.
Probab=93.00 E-value=0.049 Score=35.01 Aligned_cols=45 Identities=13% Similarity=0.115 Sum_probs=33.9
Q ss_pred cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCccc
Q psy10337 2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFN 49 (87)
Q Consensus 2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~ 49 (87)
++|+||+.||..++++++.+++++........ ..-.++.|.+...
T Consensus 329 a~q~~Gg~g~~~~~~l~r~~Rd~~~~~~h~~~---~~~~~~~~~~~~~ 373 (377)
T cd01163 329 LFEVGGASATAREHNLDRHWRNARTHTLHNPV---IYKERAVGDYALN 373 (377)
T ss_pred HHHHhCchhhccccCCcchhhhhhhhhccCHH---HHHHHHhchhhcC
Confidence 68999999999999999999999987654443 3445566665443
No 73
>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product. AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates.
Probab=92.83 E-value=0.049 Score=35.72 Aligned_cols=36 Identities=47% Similarity=0.921 Sum_probs=32.6
Q ss_pred cccccccccccCCChHHHHHHHhhhHhhHhHHHHHH
Q psy10337 2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQ 37 (87)
Q Consensus 2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~ 37 (87)
+++++|+.||.+++++++.+++++......++..++
T Consensus 373 a~~i~Gg~G~~~~~~l~r~~RDa~~~~i~~Gt~~i~ 408 (418)
T cd01154 373 AMEVFGGNGYLEEWPVARLHREAQVTPIWEGTGNIQ 408 (418)
T ss_pred HHHHhcCcEEcCCChHHHHHhcCcCcceeccHHHHH
Confidence 689999999999999999999999999988887755
No 74
>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase. VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer.
Probab=92.78 E-value=0.074 Score=34.69 Aligned_cols=37 Identities=43% Similarity=0.883 Sum_probs=32.6
Q ss_pred cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHH
Q psy10337 2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR 38 (87)
Q Consensus 2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~ 38 (87)
++|+||+.||..+++.++..+.++......+.+....
T Consensus 361 a~~~~Gg~G~~~~~~l~r~~Rd~~~~~~~~G~~~~~~ 397 (409)
T cd01161 361 AIQIHGGMGFMREYGVERVLRDLRIFRIFEGTNEILR 397 (409)
T ss_pred HHHHhcCccccCCCcHHHHHHhhhcceeecCHHHHHH
Confidence 6789999999999999999999999988888776554
No 75
>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5. Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=91.64 E-value=0.11 Score=33.97 Aligned_cols=37 Identities=49% Similarity=0.902 Sum_probs=33.1
Q ss_pred cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHH
Q psy10337 2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR 38 (87)
Q Consensus 2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~ 38 (87)
+++++|+.||.+++++++.+++++......+.+.++.
T Consensus 362 a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~Gt~~~~~ 398 (407)
T cd01153 362 AIQVHGGSGYTREYPIEQYYRDARITTIYEGTTGIQA 398 (407)
T ss_pred HHHHhcCceecCCCcHHHHHHhhhhheeecChHHHHH
Confidence 5789999999999999999999999999888887553
No 76
>TIGR02309 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Deinococcus, Thermus and Oceanobacillus. Phylogenetic trees support inclusion of the Bacillus halodurans sequence above trusted although the complete 4-hydroxyphenylacetic acid degradation pathway may not exist in that organism. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=91.19 E-value=0.34 Score=32.72 Aligned_cols=34 Identities=12% Similarity=0.098 Sum_probs=29.7
Q ss_pred hHHHHHHHhhhHhhHhHHHHHHHHHHHHhcCcccC
Q psy10337 16 PVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNS 50 (87)
Q Consensus 16 ~~~~~~~~aK~~~~~~~~~~~~~a~~~~G~~g~~~ 50 (87)
|....++++|+++++...++. .++|++||.|++.
T Consensus 358 P~~~~as~aKl~~~e~~~rv~-~alq~lGG~G~~~ 391 (477)
T TIGR02309 358 PDRGALDAARNLYPRLYPRLR-EILEQLGASGLIT 391 (477)
T ss_pred CCHHHHHHHHHHHHHHHHHHH-HHHHHHhCCcEEe
Confidence 346789999999999999995 9999999999864
No 77
>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=90.90 E-value=0.16 Score=32.79 Aligned_cols=37 Identities=27% Similarity=0.324 Sum_probs=32.5
Q ss_pred cccccccccccCC--------ChHHHHHHHhhhHhhHhHHHHHHH
Q psy10337 2 SHGVFGGNGFNSD--------YPVEKLMRDAKIYQIYEGTAQIQR 38 (87)
Q Consensus 2 ~~~i~g~~g~~~~--------~~~~~~~~~aK~~~~~~~~~~~~~ 38 (87)
+++++|+.||..+ +++++..++++......+.+.++.
T Consensus 327 a~~i~Gg~g~~~~~~~~~~~~~~~~r~~rd~~~~~~~~g~~~~~~ 371 (380)
T cd01152 327 ALELLGTAALLRDPAPGAELAGRWEADYLRSRATTIYGGTSEIQR 371 (380)
T ss_pred HHHhcCccccccccccccccccHHHHHHHhCccceeeccHHHHHH
Confidence 6789999999988 689999999999999888877665
No 78
>PLN02443 acyl-coenzyme A oxidase
Probab=90.47 E-value=0.16 Score=35.56 Aligned_cols=37 Identities=19% Similarity=0.265 Sum_probs=32.2
Q ss_pred cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHH
Q psy10337 2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR 38 (87)
Q Consensus 2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~ 38 (87)
|.|+|||.||..++++++..+.++...+..+.+.+..
T Consensus 395 ~rq~cGG~Gy~~~~~l~~l~~d~~~~~t~EGdn~Vl~ 431 (664)
T PLN02443 395 CRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNVVLL 431 (664)
T ss_pred HHHHccCccccccCcHHHHHhhhhcceeecCcHHHHH
Confidence 6799999999999999999999998888777776654
No 79
>cd01159 NcnH Naphthocyclinone hydroxylase. Naphthocyclinone is an aromatic polyketide and an antibiotic, which is active against Gram-positive bacteria. Polyketides are secondary metabolites, which have important biological functions such as antitumor, immunosupressive or antibiotic activities. NcnH is a hydroxylase involved in the biosynthesis of naphthocyclinone and possibly other polyketides.
Probab=90.46 E-value=0.2 Score=32.19 Aligned_cols=33 Identities=15% Similarity=0.255 Sum_probs=29.2
Q ss_pred cccccccccccCCChHHHHHHHhhhHhhHhHHH
Q psy10337 2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTA 34 (87)
Q Consensus 2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~ 34 (87)
+++++|+.||..++++++..++++......+..
T Consensus 324 a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~~~~ 356 (370)
T cd01159 324 LFHAAGGSALYTASPLQRIWRDIHAAAQHAALN 356 (370)
T ss_pred HHHhcCchhcccCCcHHHHHHHHHHHhhhhccC
Confidence 578999999999999999999999888866665
No 80
>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.
Probab=90.01 E-value=0.28 Score=31.40 Aligned_cols=37 Identities=59% Similarity=1.075 Sum_probs=32.8
Q ss_pred cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHH
Q psy10337 2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR 38 (87)
Q Consensus 2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~ 38 (87)
+++++|+.||.++.+.++..+.++......+...+..
T Consensus 328 ~~~~~G~~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~ 364 (373)
T cd01158 328 AVQIFGGYGYTKDYPVERYYRDAKITEIYEGTSEIQR 364 (373)
T ss_pred HHHhhcCccCCCCChHHHHHHHhhhccccCCHHHHHH
Confidence 5789999999999999999999999999888876554
No 81
>cd00567 ACAD Acyl-CoA dehydrogenase. Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isob
Probab=89.89 E-value=0.25 Score=30.92 Aligned_cols=37 Identities=49% Similarity=0.912 Sum_probs=31.7
Q ss_pred cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHH
Q psy10337 2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR 38 (87)
Q Consensus 2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~ 38 (87)
+++++|+.||..+.++++.++.++.+....+......
T Consensus 286 ~~~~~Gg~g~~~~~~l~r~~rd~~~~~~~~G~~~~~~ 322 (327)
T cd00567 286 AMQIHGGRGYSREYPVERYLRDARAARIAEGTAEIQR 322 (327)
T ss_pred HHHHccCccccCCCHHHHHHHhhhcceeecCHHHHHH
Confidence 5789999999999999999999999888777765443
No 82
>cd01150 AXO Peroxisomal acyl-CoA oxidase. Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in the peroxisomal fatty acid beta-oxidation, the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. In a second oxidative half-reaction, the reduced FAD is reoxidized by molecular oxygen. AXO is generally a homodimer, but it has been reported to form a different type of oligomer in yeast. There are several subtypes of AXO's, based on substrate specificity. Palmitoyl-CoA oxidase acts on straight-chain fatty acids and prostanoids; whereas, the closely related Trihydroxycoprostanoly-CoA oxidase has the greatest activity for 2-methyl branched side chains of bile precursors. Pristanoyl-CoA oxidase, acts on 2-methyl branched fatty acids. AXO has an additional domain, C-terminal to the region with similarity to acyl-CoA dehydrogenases, which is included in this alignment.
Probab=88.75 E-value=0.12 Score=35.74 Aligned_cols=37 Identities=22% Similarity=0.388 Sum_probs=32.7
Q ss_pred cccccccccccCCChHHHHHHHhhhHhhHhHHHHHHH
Q psy10337 2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR 38 (87)
Q Consensus 2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~~ 38 (87)
|.|+|||.||..+.+++...+.++...+..|.+.+..
T Consensus 399 ~rq~~GG~Gy~~~~~l~~l~~d~~~~~t~EG~n~vl~ 435 (610)
T cd01150 399 CREACGGHGYLAMNRLPTLRDDNDPFCTYEGDNTVLL 435 (610)
T ss_pred HHHHhcCccchhhcChHHHHhhccceeeeecchHhHH
Confidence 6789999999999999999999999888888776654
No 83
>KOG0137|consensus
Probab=88.45 E-value=0.2 Score=34.49 Aligned_cols=36 Identities=39% Similarity=0.754 Sum_probs=30.5
Q ss_pred cccccccccccCCChHHHHHHHhhhHhhHhHHHHHH
Q psy10337 2 SHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQ 37 (87)
Q Consensus 2 ~~~i~g~~g~~~~~~~~~~~~~aK~~~~~~~~~~~~ 37 (87)
++|++|+.||+.+.+.++..++++++.+..++..+.
T Consensus 415 ~iqi~Gg~g~m~d~g~Er~LRD~ri~~I~egtndvL 450 (634)
T KOG0137|consen 415 AIQIVGGMGYMRDTGLERLLRDARILRIFEGTNDVL 450 (634)
T ss_pred hhheeccccccccCchHHHhhhhheeeeecCchhHH
Confidence 579999999999999999999999988766655443
No 84
>COG2087 CobU Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase [Coenzyme metabolism]
Probab=34.82 E-value=29 Score=20.60 Aligned_cols=19 Identities=32% Similarity=0.562 Sum_probs=15.7
Q ss_pred cCcccCCchHHHHhhhhhh
Q psy10337 45 GNGFNSDYPVEKLMRDAKI 63 (87)
Q Consensus 45 ~~g~~~~~~~~~~~~~~~~ 63 (87)
|.|...++++.|.|||.-.
T Consensus 131 G~GiVPe~~l~R~fRD~~G 149 (175)
T COG2087 131 GLGIVPEYRLGRLFRDIAG 149 (175)
T ss_pred cCCcCcCchhhHHHHHHHh
Confidence 6777788999999999654
Done!