RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10337
(87 letters)
>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron
transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1
e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A*
3mdd_A* 3mde_A*
Length = 396
Score = 93.3 bits (233), Expect = 2e-24
Identities = 33/44 (75%), Positives = 40/44 (90%)
Query: 42 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIER 85
+ GGNGFN++YPVEKLMRDAKIYQIY GT+QIQRLIV+R I++
Sbjct: 350 ILGGNGFNTEYPVEKLMRDAKIYQIYGGTSQIQRLIVAREHIDK 393
Score = 85.6 bits (213), Expect = 1e-21
Identities = 31/37 (83%), Positives = 35/37 (94%)
Query: 5 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
+ GGNGFN++YPVEKLMRDAKIYQIY GT+QIQRLIV
Sbjct: 350 ILGGNGFNTEYPVEKLMRDAKIYQIYGGTSQIQRLIV 386
>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP:
a.29.3.1 e.6.1.1
Length = 379
Score = 90.2 bits (225), Expect = 2e-23
Identities = 24/42 (57%), Positives = 34/42 (80%)
Query: 42 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 83
+ GG G+ ++PVEKL+RD K+ QIYEGT +IQRLI++R I+
Sbjct: 336 IHGGYGYVREFPVEKLLRDVKLNQIYEGTNEIQRLIIARHIL 377
Score = 83.7 bits (208), Expect = 5e-21
Identities = 22/37 (59%), Positives = 30/37 (81%)
Query: 5 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
+ GG G+ ++PVEKL+RD K+ QIYEGT +IQRLI+
Sbjct: 336 IHGGYGYVREFPVEKLLRDVKLNQIYEGTNEIQRLII 372
>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
FDA; 2.10A {Mycobacterium thermoresistibile}
Length = 393
Score = 88.3 bits (220), Expect = 1e-22
Identities = 27/42 (64%), Positives = 37/42 (88%)
Query: 42 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 83
+FGG G+ D+PVE++MRDAKI QIYEGT QIQR+++SRA++
Sbjct: 351 LFGGYGYTQDFPVERMMRDAKITQIYEGTNQIQRVVMSRALL 392
Score = 81.8 bits (203), Expect = 2e-20
Identities = 24/37 (64%), Positives = 32/37 (86%)
Query: 5 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
+FGG G+ D+PVE++MRDAKI QIYEGT QIQR+++
Sbjct: 351 LFGGYGYTQDFPVERMMRDAKITQIYEGTNQIQRVVM 387
>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA
dehydrogenase, , aldehyde dehydrogenase, oxidoreductase;
HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP:
a.29.3.1 e.6.1.1
Length = 366
Score = 86.4 bits (215), Expect = 4e-22
Identities = 12/42 (28%), Positives = 26/42 (61%)
Query: 42 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 83
V G + VE+ RDAK+ +I EG++++ R+++++ +
Sbjct: 321 VLASAGAREGHVVERAYRDAKLMEIIEGSSEMCRVMLAQHAL 362
Score = 80.6 bits (200), Expect = 7e-20
Identities = 12/37 (32%), Positives = 23/37 (62%)
Query: 5 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
V G + VE+ RDAK+ +I EG++++ R+++
Sbjct: 321 VLASAGAREGHVVERAYRDAKLMEIIEGSSEMCRVML 357
>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA
dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A
{Podospora anserina}
Length = 438
Score = 85.4 bits (212), Expect = 1e-21
Identities = 8/45 (17%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 42 VFGGNGFNSDYPVEKLMRDAKIYQIYEGT-AQIQRLIVSRAIIER 85
G + ++ P L+ A + I++G I+R + + +++
Sbjct: 373 AVGISAYDLQRPFSDLLNTAVVLPIFDGGNVGIRRRHLQQLMLKP 417
Score = 79.2 bits (196), Expect = 3e-19
Identities = 8/38 (21%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 5 VFGGNGFNSDYPVEKLMRDAKIYQIYEGT-AQIQRLIV 41
G + ++ P L+ A + I++G I+R +
Sbjct: 373 AVGISAYDLQRPFSDLLNTAVVLPIFDGGNVGIRRRHL 410
>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for
infectious disease, S FAD, FADH, tuberculosis,
oxidoredu; HET: FAD; 2.35A {Mycobacterium
thermoresistibile}
Length = 387
Score = 83.3 bits (207), Expect = 8e-21
Identities = 25/42 (59%), Positives = 33/42 (78%)
Query: 42 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 83
VFGG G+ DY VE+ MR+AKI QI+EGT QIQRL+++R +
Sbjct: 345 VFGGVGYTRDYRVERYMREAKIMQIFEGTNQIQRLVIARGLT 386
Score = 76.8 bits (190), Expect = 1e-18
Identities = 24/37 (64%), Positives = 30/37 (81%)
Query: 5 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
VFGG G+ DY VE+ MR+AKI QI+EGT QIQRL++
Sbjct: 345 VFGGVGYTRDYRVERYMREAKIMQIFEGTNQIQRLVI 381
>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET:
FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A*
Length = 397
Score = 83.4 bits (207), Expect = 8e-21
Identities = 14/42 (33%), Positives = 27/42 (64%)
Query: 42 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 83
+ G G++++YPV + RDA Y + EG+A I ++I++ +
Sbjct: 341 ILGAYGYSTEYPVARFYRDAPTYYMVEGSANICKMIIALDQL 382
Score = 77.2 bits (191), Expect = 1e-18
Identities = 14/37 (37%), Positives = 25/37 (67%)
Query: 5 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
+ G G++++YPV + RDA Y + EG+A I ++I+
Sbjct: 341 ILGAYGYSTEYPVARFYRDAPTYYMVEGSANICKMII 377
>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain
acyl-COA dehydrogenase, flavoprotein, oxidoreductase;
HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP:
a.29.3.1 e.6.1.1
Length = 383
Score = 82.5 bits (205), Expect = 1e-20
Identities = 21/42 (50%), Positives = 32/42 (76%)
Query: 42 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 83
+FGG G++ +YPV + MRDAKI QIYEGT ++Q ++ A++
Sbjct: 341 IFGGYGYSEEYPVARHMRDAKITQIYEGTNEVQLMVTGGALL 382
Score = 76.4 bits (189), Expect = 3e-18
Identities = 20/37 (54%), Positives = 29/37 (78%)
Query: 5 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
+FGG G++ +YPV + MRDAKI QIYEGT ++Q ++
Sbjct: 341 IFGGYGYSEEYPVARHMRDAKITQIYEGTNEVQLMVT 377
>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national
project on protein STR and functional analyses; HET:
FAD; 2.50A {Thermus thermophilus}
Length = 372
Score = 82.1 bits (204), Expect = 2e-20
Identities = 22/42 (52%), Positives = 33/42 (78%)
Query: 42 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 83
V GG G++ DY VE+ RDAK+ +IYEGT++IQRL+++R +
Sbjct: 330 VLGGYGYHRDYRVERYYRDAKVTEIYEGTSEIQRLVIARELY 371
Score = 76.0 bits (188), Expect = 3e-18
Identities = 21/37 (56%), Positives = 30/37 (81%)
Query: 5 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
V GG G++ DY VE+ RDAK+ +IYEGT++IQRL++
Sbjct: 330 VLGGYGYHRDYRVERYYRDAKVTEIYEGTSEIQRLVI 366
>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial;
flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC;
1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1
Length = 393
Score = 82.2 bits (204), Expect = 2e-20
Identities = 15/43 (34%), Positives = 34/43 (79%)
Query: 42 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIE 84
+ GG G+ DY V++ +RD++++QI EG+ ++ R+++SR++++
Sbjct: 350 MHGGYGYLKDYAVQQYVRDSRVHQILEGSNEVMRILISRSLLQ 392
Score = 75.3 bits (186), Expect = 5e-18
Identities = 13/37 (35%), Positives = 28/37 (75%)
Query: 5 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
+ GG G+ DY V++ +RD++++QI EG+ ++ R+++
Sbjct: 350 MHGGYGYLKDYAVQQYVRDSRVHQILEGSNEVMRILI 386
>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid
metabolism, FAD, polymorphism, flavoprotein,
mitochondrion, disease mutation; HET: FAD COS; 1.9A
{Homo sapiens} PDB: 1jqi_A*
Length = 391
Score = 82.2 bits (204), Expect = 2e-20
Identities = 18/44 (40%), Positives = 32/44 (72%)
Query: 42 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIER 85
+ GG G+ ++ P E+ RDA+I +IYEGT++IQRL+++ ++
Sbjct: 338 ILGGMGYVTEMPAERHYRDARITEIYEGTSEIQRLVIAGHLLRS 381
Score = 75.6 bits (187), Expect = 4e-18
Identities = 18/37 (48%), Positives = 29/37 (78%)
Query: 5 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
+ GG G+ ++ P E+ RDA+I +IYEGT++IQRL++
Sbjct: 338 ILGGMGYVTEMPAERHYRDARITEIYEGTSEIQRLVI 374
>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA
dehydrogenase, flavoprotein, isovaleric acidemia; HET:
FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1
Length = 394
Score = 81.8 bits (203), Expect = 3e-20
Identities = 19/43 (44%), Positives = 33/43 (76%)
Query: 42 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIE 84
FGGNG+ +D+P+ + +RDAK+Y+I GT++++RL++ RA
Sbjct: 349 CFGGNGYINDFPMGRFLRDAKLYEIGAGTSEVRRLVIGRAFNA 391
Score = 77.2 bits (191), Expect = 1e-18
Identities = 21/48 (43%), Positives = 37/48 (77%), Gaps = 3/48 (6%)
Query: 5 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDY 52
FGGNG+ +D+P+ + +RDAK+Y+I GT++++RL++ G FN+D+
Sbjct: 349 CFGGNGYINDFPMGRFLRDAKLYEIGAGTSEVRRLVI---GRAFNADF 393
>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA
dehydrogenase, long cell EDGE, FAD, inhibitor,
flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium
oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A*
2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A*
Length = 439
Score = 81.6 bits (202), Expect = 4e-20
Identities = 7/46 (15%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 42 VFGGNGFNSDYPVEKLMRDAKIYQIYEGT-AQIQRLIVSRAIIERN 86
G + D +L+ + Y +++G ++R + R + +
Sbjct: 376 AVGMKSYAKDMSFPRLLNEVMCYPLFDGGNIGLRRRQMQRVMALED 421
Score = 76.6 bits (189), Expect = 2e-18
Identities = 8/43 (18%), Positives = 18/43 (41%), Gaps = 6/43 (13%)
Query: 5 VFGGNGFNSDYPVEKLMRDAKIYQIYEGT------AQIQRLIV 41
G + D +L+ + Y +++G Q+QR++
Sbjct: 376 AVGMKSYAKDMSFPRLLNEVMCYPLFDGGNIGLRRRQMQRVMA 418
>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national
project protein structural and functional analyses; HET:
FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1
PDB: 1ws9_A 2cx9_A*
Length = 387
Score = 81.4 bits (202), Expect = 4e-20
Identities = 18/42 (42%), Positives = 32/42 (76%)
Query: 42 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 83
+ GG G+ DYPVE+ RDA++ +I EGT++I +L+++R ++
Sbjct: 343 ILGGYGYVKDYPVERYWRDARLTRIGEGTSEILKLVIARRLL 384
Score = 74.8 bits (185), Expect = 7e-18
Identities = 17/37 (45%), Positives = 28/37 (75%)
Query: 5 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
+ GG G+ DYPVE+ RDA++ +I EGT++I +L++
Sbjct: 343 ILGGYGYVKDYPVERYWRDARLTRIGEGTSEILKLVI 379
>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion,
oxidoreductase, transit peptide, fatty acid metabolism,
FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens}
Length = 404
Score = 80.3 bits (199), Expect = 9e-20
Identities = 21/42 (50%), Positives = 26/42 (61%)
Query: 42 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 83
GG G+ DYPVEK RDAKI IYEG + IQ +++ I
Sbjct: 360 WMGGVGYTKDYPVEKYFRDAKIGTIYEGASNIQLNTIAKHID 401
Score = 74.5 bits (184), Expect = 1e-17
Identities = 20/37 (54%), Positives = 23/37 (62%)
Query: 5 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
GG G+ DYPVEK RDAKI IYEG + IQ +
Sbjct: 360 WMGGVGYTKDYPVEKYFRDAKIGTIYEGASNIQLNTI 396
>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase
family, kijanose, kijani FAD, flavoprotein; HET: TYD;
2.05A {Actinomadura kijaniata}
Length = 439
Score = 79.3 bits (196), Expect = 3e-19
Identities = 12/79 (15%), Positives = 31/79 (39%), Gaps = 3/79 (3%)
Query: 5 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVVFG---GNGFNSDYPVEKLMRDA 61
+ GG + + +P+ +L+RD + + + A + + + G +++Y R
Sbjct: 361 LVGGASYTAGHPLARLLRDVQAGRFMQPYAYVDAVDFLSAQALGIERDNNYMSTWAKRSG 420
Query: 62 KIYQIYEGTAQIQRLIVSR 80
+ + + SR
Sbjct: 421 GNGKSADAAGPRRPTPTSR 439
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na
project on protein structural and functional analyses;
HET: FAD; 2.30A {Thermus thermophilus}
Length = 577
Score = 79.3 bits (196), Expect = 3e-19
Identities = 18/44 (40%), Positives = 32/44 (72%)
Query: 42 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIER 85
+ GG G++ +YP+E+ RDA+I +I+EGT +I RL++ ++ R
Sbjct: 372 IHGGYGYSQEYPIERAYRDARINRIFEGTNEINRLLIPGMLLRR 415
Score = 73.9 bits (182), Expect = 2e-17
Identities = 17/38 (44%), Positives = 29/38 (76%)
Query: 5 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVV 42
+ GG G++ +YP+E+ RDA+I +I+EGT +I RL++
Sbjct: 372 IHGGYGYSQEYPIERAYRDARINRIFEGTNEINRLLIP 409
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural
genomics of infec diseases, csgid, alpha-structure,
beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus
anthracis}
Length = 597
Score = 78.2 bits (193), Expect = 7e-19
Identities = 18/44 (40%), Positives = 31/44 (70%)
Query: 42 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIER 85
+ GG GF ++Y +E++ RD++I +I+EGT +I RLIV + +
Sbjct: 382 IHGGYGFMAEYEIERMYRDSRINRIFEGTNEINRLIVPGTFLRK 425
Score = 73.2 bits (180), Expect = 4e-17
Identities = 18/38 (47%), Positives = 29/38 (76%)
Query: 5 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVV 42
+ GG GF ++Y +E++ RD++I +I+EGT +I RLIV
Sbjct: 382 IHGGYGFMAEYEIERMYRDSRINRIFEGTNEINRLIVP 419
>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas
oxidoreductase; 3.15A {Micromonospora carbonacea}
Length = 395
Score = 77.7 bits (192), Expect = 9e-19
Identities = 7/40 (17%), Positives = 19/40 (47%)
Query: 5 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVVFG 44
+ GG + + +P+ +L RD + + + + + + G
Sbjct: 350 LVGGLAYTAGHPLSRLYRDVRAGGFMQPYSYVDAVDYLSG 389
Score = 76.1 bits (188), Expect = 3e-18
Identities = 6/37 (16%), Positives = 17/37 (45%)
Query: 42 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 78
+ GG + + +P+ +L RD + + + + +
Sbjct: 350 LVGGLAYTAGHPLSRLYRDVRAGGFMQPYSYVDAVDY 386
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid
metabolism, transit peptide, disease mutation, LI
metabolism, coenzyme A dehydrogenase; HET: FAD TH3;
1.45A {Homo sapiens} PDB: 3b96_A*
Length = 607
Score = 77.0 bits (190), Expect = 2e-18
Identities = 17/42 (40%), Positives = 27/42 (64%)
Query: 42 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 83
+ GG GF + VE+++RD +I++I+EGT I RL V+
Sbjct: 388 IMGGMGFMKEPGVERVLRDLRIFRIFEGTNDILRLFVALQGC 429
Score = 72.8 bits (179), Expect = 5e-17
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 5 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
+ GG GF + VE+++RD +I++I+EGT I RL V
Sbjct: 388 IMGGMGFMKEPGVERVLRDLRIFRIFEGTNDILRLFV 424
>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening,
optimization, protein crystallization, structural
genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei
1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A
Length = 396
Score = 70.3 bits (173), Expect = 4e-16
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 42 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAI 82
+ GGNG + ++ V + + + ++ YEGT I LI+ RA
Sbjct: 349 MLGGNGISDEFGVARHLVNLEVVNTYEGTHDIHALILGRAQ 389
Score = 63.3 bits (155), Expect = 9e-14
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 5 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
+ GGNG + ++ V + + + ++ YEGT I LI+
Sbjct: 349 MLGGNGISDEFGVARHLVNLEVVNTYEGTHDIHALIL 385
>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin,
peroxisome, glyoxysome, fatty acid metabo lipid
metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A
{Arabidopsis thaliana} PDB: 2ix6_A*
Length = 436
Score = 69.6 bits (171), Expect = 7e-16
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 42 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAI 82
+ GGNG +D+ V K D + YEGT I L+ R +
Sbjct: 382 LLGGNGILADFLVAKAFCDLEPIYTYEGTYDINTLVTGREV 422
Score = 63.1 bits (154), Expect = 1e-13
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 5 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
+ GGNG +D+ V K D + YEGT I L+
Sbjct: 382 LLGGNGILADFLVAKAFCDLEPIYTYEGTYDINTLVT 418
>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase,
mycobacerium smegmatis, S genomics; HET: FDA; 1.45A
{Mycobacterium smegmatis}
Length = 399
Score = 68.8 bits (169), Expect = 1e-15
Identities = 10/41 (24%), Positives = 22/41 (53%)
Query: 42 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAI 82
+ GG+G +Y + + + YEGT+++ L + +A+
Sbjct: 351 LLGGSGITLEYSPLRHANNLESVLTYEGTSEMHLLSIGKAL 391
Score = 62.2 bits (152), Expect = 2e-13
Identities = 9/37 (24%), Positives = 19/37 (51%)
Query: 5 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
+ GG+G +Y + + + YEGT+++ L +
Sbjct: 351 LLGGSGITLEYSPLRHANNLESVLTYEGTSEMHLLSI 387
>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics,
seattle structural genomics CEN infectious disease,
oxidoreductase; HET: FAO; 1.70A {Mycobacterium
smegmatis} PDB: 3oib_A*
Length = 403
Score = 68.7 bits (169), Expect = 1e-15
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 42 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAI 82
+FGG G+ ++ VE+ RD +I I GT +I + ++ +
Sbjct: 359 LFGGMGYMAESEVERQYRDMRILGIGGGTTEILTSLAAKTL 399
Score = 63.7 bits (156), Expect = 8e-14
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 5 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
+FGG G+ ++ VE+ RD +I I GT +I +
Sbjct: 359 LFGGMGYMAESEVERQYRDMRILGIGGGTTEILTSLA 395
>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; HET: FDA; 1.70A
{Mycobacterium smegmatis}
Length = 403
Score = 68.4 bits (168), Expect = 2e-15
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 42 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAI 82
V G +G +YPV + + + YEGT+++ LI+ +A+
Sbjct: 356 VLGASGITGEYPVMRHANNLESVLTYEGTSEMHTLIIGQAL 396
Score = 62.2 bits (152), Expect = 3e-13
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 5 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
V G +G +YPV + + + YEGT+++ LI+
Sbjct: 356 VLGASGITGEYPVMRHANNLESVLTYEGTSEMHTLII 392
>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD,
STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus
thermophilus}
Length = 385
Score = 68.4 bits (168), Expect = 2e-15
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 42 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAI 82
+ GG+G +Y + M + + YEGT + L++ R I
Sbjct: 339 ILGGSGITLEYHAIRHMLNLETVYTYEGTHDVHTLVLGREI 379
Score = 61.8 bits (151), Expect = 3e-13
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 5 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
+ GG+G +Y + M + + YEGT + L++
Sbjct: 339 ILGGSGITLEYHAIRHMLNLETVYTYEGTHDVHTLVL 375
>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA
structural genomics, PSI, protein structure initiative;
HET: FAD; 1.80A {Geobacillus kaustophilus}
Length = 385
Score = 68.3 bits (168), Expect = 2e-15
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 42 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAI 82
+ GG G+ +Y + + RD + IY GT ++ + I++R +
Sbjct: 343 LHGGYGYMEEYEIARRYRDIPVSAIYAGTNEMMKTIIARQL 383
Score = 62.9 bits (154), Expect = 1e-13
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 5 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
+ GG G+ +Y + + RD + IY GT ++ + I+
Sbjct: 343 LHGGYGYMEEYEIARRYRDIPVSAIYAGTNEMMKTII 379
>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics,
seattle structural genomics CEN infectious disease,
oxidoreductase; HET: FDA; 2.50A {Mycobacterium
abscessus}
Length = 403
Score = 68.3 bits (168), Expect = 2e-15
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 42 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAI 82
+FGG G+ + +E+ RD +I I GT +I ++++ I
Sbjct: 361 IFGGMGYMRESEIERHYRDCRILGIGGGTNEIMNEVIAKRI 401
Score = 62.9 bits (154), Expect = 1e-13
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 5 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
+FGG G+ + +E+ RD +I I GT +I ++
Sbjct: 361 IFGGMGYMRESEIERHYRDCRILGIGGGTNEIMNEVI 397
>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase,
decarboxylation, flavin protein, oxidoreductase; HET:
FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB:
2r0n_A* 1sir_A* 2r0m_A*
Length = 392
Score = 66.8 bits (164), Expect = 6e-15
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 42 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAI 82
+ GGNG + +Y V + + + YEGT I LI+ RAI
Sbjct: 342 MLGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHALILGRAI 382
Score = 60.3 bits (147), Expect = 1e-12
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 5 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
+ GGNG + +Y V + + + YEGT I LI+
Sbjct: 342 MLGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHALIL 378
>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein,
oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB:
3u33_A*
Length = 541
Score = 53.6 bits (129), Expect = 3e-10
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 42 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAI 82
V GG G+ + + +L R+ + I+EG+ I L V R +
Sbjct: 399 VLGGIGYCEESELPRLYREMPVNSIWEGSGNIMCLDVLRVL 439
Score = 50.9 bits (122), Expect = 3e-09
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 5 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVV 42
V GG G+ + + +L R+ + I+EG+ I L V+
Sbjct: 399 VLGGIGYCEESELPRLYREMPVNSIWEGSGNIMCLDVL 436
>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD
cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP:
a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A*
Length = 659
Score = 48.0 bits (114), Expect = 3e-08
Identities = 11/48 (22%), Positives = 22/48 (45%)
Query: 36 IQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 83
I+ + GG+G+ + +L YEG + +L V+R ++
Sbjct: 392 IEECRKLCGGHGYLWCSGLPELFAVYVPACTYEGDNVVLQLQVARFLM 439
Score = 41.8 bits (98), Expect = 5e-06
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 5 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVV 42
+ GG+G+ + +L YEG + +L V
Sbjct: 398 LCGGHGYLWCSGLPELFAVYVPACTYEGDNVVLQLQVA 435
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.7 bits (113), Expect = 4e-08
Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 19/71 (26%)
Query: 16 PVEK-----LMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGT 70
P +K L R EG A +L+ +FGG G DY E+L RD +YQ Y
Sbjct: 136 PFDKKSNSALFRAVG-----EGNA---QLVAIFGGQGNTDDY-FEEL-RD--LYQTYHVL 183
Query: 71 AQIQRLIVSRA 81
+ LI A
Sbjct: 184 --VGDLIKFSA 192
Score = 38.9 bits (90), Expect = 6e-05
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 6/36 (16%)
Query: 5 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLI 40
+FGG G DY E+L RD +YQ Y + LI
Sbjct: 159 IFGGQGNTDDY-FEEL-RD--LYQTYHVL--VGDLI 188
>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle,
oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus}
SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A*
Length = 661
Score = 46.8 bits (111), Expect = 8e-08
Identities = 8/48 (16%), Positives = 20/48 (41%)
Query: 36 IQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 83
I+ + GG+G++ + + +EG + L +R ++
Sbjct: 389 IEECRMACGGHGYSHSSGIPNIYVTFTPACTFEGENTVMMLQTARFLM 436
Score = 38.7 bits (90), Expect = 5e-05
Identities = 6/36 (16%), Positives = 13/36 (36%)
Query: 6 FGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
GG+G++ + + +EG + L
Sbjct: 396 CGGHGYSHSSGIPNIYVTFTPACTFEGENTVMMLQT 431
>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme
hydroxylase, oxidoreductase; 2.3A {Acinetobacter
baumannii} PDB: 2jbs_A* 2jbt_A*
Length = 422
Score = 34.4 bits (79), Expect = 0.002
Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Query: 20 LMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQ-IQRLIV 78
R + Y + + RL+ G F + +++L RDA + + T + I+
Sbjct: 349 FWRTNQAYAVKMCIEAVDRLMAAAGATSFMDNSELQRLFRDAHMTGAHAYTDYDVCAQIL 408
Query: 79 SRAI 82
R +
Sbjct: 409 GREL 412
Score = 30.5 bits (69), Expect = 0.048
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 5 VFGGNGFNSDYPVEKLMRDAKIYQIYEGT 33
G F + +++L RDA + + T
Sbjct: 371 AAGATSFMDNSELQRLFRDAHMTGAHAYT 399
>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein,
oxidoreducta; HET: FAD; 2.80A {Homo sapiens}
Length = 428
Score = 32.2 bits (74), Expect = 0.011
Identities = 9/50 (18%), Positives = 23/50 (46%)
Query: 36 IQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIER 85
+ I V GG G + DYP+ + ++ ++ +G ++ ++ +
Sbjct: 370 VDWAIQVCGGAGVSQDYPLANMYAITRVLRLADGPDEVHLSAIATMELRD 419
Score = 28.0 bits (63), Expect = 0.28
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 5 VFGGNGFNSDYPVEKLMRDAKIYQIYEG 32
V GG G + DYP+ + ++ ++ +G
Sbjct: 376 VCGGAGVSQDYPLANMYAITRVLRLADG 403
>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural
genomics protein structure initiative, midwest center
for structural genomics, MCSG; HET: 1PS; 1.65A
{Rhodococcus SP} PDB: 3aff_A 3afe_A
Length = 394
Score = 28.5 bits (64), Expect = 0.20
Identities = 8/56 (14%), Positives = 20/56 (35%)
Query: 21 MRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRL 76
R ++ + I +L G + P+++ RDA +++ +
Sbjct: 322 ARRDQVRATGRAISSIDKLFESSGATALANGTPLQRFWRDAHAGRVHAANDPERAY 377
Score = 26.6 bits (59), Expect = 1.0
Identities = 5/38 (13%), Positives = 15/38 (39%)
Query: 5 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVV 42
G + P+++ RDA +++ + ++
Sbjct: 343 SSGATALANGTPLQRFWRDAHAGRVHAANDPERAYVMY 380
>3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix
bundle, oxidoreductase; 2.50A {Burkholderia cepacia}
Length = 515
Score = 26.4 bits (57), Expect = 1.1
Identities = 10/75 (13%), Positives = 26/75 (34%), Gaps = 8/75 (10%)
Query: 16 PVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYE------G 69
P + + + + + + L+ + G + P E D++ Q +
Sbjct: 357 PNPLIYDFGRAHFLQNQMSVMYELLDLAGRSSLM--IPSEGQWDDSQSGQWFVKLNNGPK 414
Query: 70 TAQIQRLIVSRAIIE 84
+R+ + R I +
Sbjct: 415 GNPRERVQIGRVIRD 429
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.7 bits (55), Expect = 1.7
Identities = 8/31 (25%), Positives = 16/31 (51%), Gaps = 5/31 (16%)
Query: 54 VEKLMRDAKIYQIYEGTAQIQRLIVSRAIIE 84
++KL K+Y + +A L + +A +E
Sbjct: 22 LKKLQASLKLYA--DDSAPA--LAI-KATME 47
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex,
ATP-binding, chaperone, nucleotide-BIND phosphoprotein,
stress response; HET: ADP; 1.30A {Homo sapiens} PDB:
1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A*
1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A*
3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* 1ngf_A* ...
Length = 404
Score = 24.4 bits (54), Expect = 5.8
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 10/32 (31%)
Query: 16 PVEKLMRDAKIY--QIYEGTAQIQRLIVVFGG 45
PVEK +RDAK+ QI E IV+ GG
Sbjct: 337 PVEKALRDAKLDKGQIQE--------IVLVGG 360
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 24.5 bits (53), Expect = 6.3
Identities = 6/8 (75%), Positives = 7/8 (87%)
Query: 3 HGVFGGNG 10
HG FGG+G
Sbjct: 631 HGTFGGDG 638
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP,
chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae}
PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Length = 394
Score = 24.0 bits (53), Expect = 8.9
Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 10/32 (31%)
Query: 16 PVEKLMRDAKIY--QIYEGTAQIQRLIVVFGG 45
PVEK+++D+ + + + IV+ GG
Sbjct: 329 PVEKVLQDSGLEKKDVDD--------IVLVGG 352
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.140 0.398
Gapped
Lambda K H
0.267 0.0794 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,394,620
Number of extensions: 74416
Number of successful extensions: 232
Number of sequences better than 10.0: 1
Number of HSP's gapped: 228
Number of HSP's successfully gapped: 82
Length of query: 87
Length of database: 6,701,793
Length adjustment: 55
Effective length of query: 32
Effective length of database: 5,166,138
Effective search space: 165316416
Effective search space used: 165316416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.3 bits)