RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10337
(87 letters)
>d1w07a1 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, domains 3
and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 189
Score = 60.6 bits (146), Expect = 1e-13
Identities = 12/65 (18%), Positives = 24/65 (36%)
Query: 21 MRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSR 80
K I+ + GG+G+ + +L YEG + +L V+R
Sbjct: 105 TAGLKSLTTTATADGIEECRKLCGGHGYLWCSGLPELFAVYVPACTYEGDNVVLQLQVAR 164
Query: 81 AIIER 85
+++
Sbjct: 165 FLMKT 169
Score = 50.6 bits (120), Expect = 7e-10
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 5 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
+ GG+G+ + +L YEG + +L V
Sbjct: 126 LCGGHGYLWCSGLPELFAVYVPACTYEGDNVVLQLQV 162
>d1rx0a1 a.29.3.1 (A:241-393) Isobutyryl-CoA dehydrogenase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 153
Score = 57.7 bits (138), Expect = 8e-13
Identities = 15/43 (34%), Positives = 34/43 (79%)
Query: 42 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAIIE 84
+ GG G+ DY V++ +RD++++QI EG+ ++ R+++SR++++
Sbjct: 110 MHGGYGYLKDYAVQQYVRDSRVHQILEGSNEVMRILISRSLLQ 152
Score = 52.3 bits (124), Expect = 1e-10
Identities = 13/37 (35%), Positives = 28/37 (75%)
Query: 5 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
+ GG G+ DY V++ +RD++++QI EG+ ++ R+++
Sbjct: 110 MHGGYGYLKDYAVQQYVRDSRVHQILEGSNEVMRILI 146
>d1buca1 a.29.3.1 (A:233-383) Butyryl-CoA dehydrogenase, C-domain
{Megasphaera elsdenii [TaxId: 907]}
Length = 151
Score = 57.2 bits (137), Expect = 1e-12
Identities = 21/44 (47%), Positives = 33/44 (75%)
Query: 40 IVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 83
+ +FGG G++ +YPV + MRDAKI QIYEGT ++Q ++ A++
Sbjct: 107 VQIFGGYGYSEEYPVARHMRDAKITQIYEGTNEVQLMVTGGALL 150
Score = 51.9 bits (123), Expect = 1e-10
Identities = 20/36 (55%), Positives = 28/36 (77%)
Query: 6 FGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
FGG G++ +YPV + MRDAKI QIYEGT ++Q ++
Sbjct: 110 FGGYGYSEEYPVARHMRDAKITQIYEGTNEVQLMVT 145
>d2d29a1 a.29.3.1 (A:235-387) Acyl-CoA dehydrogenase {Thermus
thermophilus [TaxId: 274]}
Length = 153
Score = 57.2 bits (137), Expect = 1e-12
Identities = 23/69 (33%), Positives = 39/69 (56%)
Query: 16 PVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQR 75
P AK++ I + GG G+ DYPVE+ RDA++ +I EGT++I +
Sbjct: 83 PFTLEAAQAKLFASEAAVKACDEAIQILGGYGYVKDYPVERYWRDARLTRIGEGTSEILK 142
Query: 76 LIVSRAIIE 84
L+++R ++E
Sbjct: 143 LVIARRLLE 151
Score = 47.2 bits (111), Expect = 1e-08
Identities = 17/37 (45%), Positives = 28/37 (75%)
Query: 5 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
+ GG G+ DYPVE+ RDA++ +I EGT++I +L++
Sbjct: 109 ILGGYGYVKDYPVERYWRDARLTRIGEGTSEILKLVI 145
>d3mdea1 a.29.3.1 (A:242-395) Medium chain acyl-CoA dehydrogenase,
C-domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 154
Score = 57.3 bits (137), Expect = 1e-12
Identities = 39/65 (60%), Positives = 45/65 (69%)
Query: 21 MRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSR 80
AK Y + VFGGNGFN++YPVEKLMRDAKIYQIYEGTAQIQR+I++R
Sbjct: 88 ASIAKAYAADIANQLATDAVQVFGGNGFNTEYPVEKLMRDAKIYQIYEGTAQIQRIIIAR 147
Query: 81 AIIER 85
I R
Sbjct: 148 EHIGR 152
Score = 49.6 bits (117), Expect = 1e-09
Identities = 33/41 (80%), Positives = 38/41 (92%)
Query: 1 MSHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
+ VFGGNGFN++YPVEKLMRDAKIYQIYEGTAQIQR+I+
Sbjct: 105 DAVQVFGGNGFNTEYPVEKLMRDAKIYQIYEGTAQIQRIII 145
>d1siqa1 a.29.3.1 (A:239-392) Glutaryl-CoA dehydrogenase GCDH {Human
(Homo sapiens) [TaxId: 9606]}
Length = 154
Score = 55.8 bits (133), Expect = 5e-12
Identities = 19/82 (23%), Positives = 35/82 (42%)
Query: 1 MSHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRD 60
+ + G + D +++ K + ++ + GGNG + +Y V + +
Sbjct: 65 LHACLQLGRLKDQDKAAPEMVSLLKRNNCGKALDIARQARDMLGGNGISDEYHVIRHAMN 124
Query: 61 AKIYQIYEGTAQIQRLIVSRAI 82
+ YEGT I LI+ RAI
Sbjct: 125 LEAVNTYEGTHDIHALILGRAI 146
>d1ukwa1 a.29.3.1 (A:259-410) Medium chain acyl-CoA dehydrogenase,
C-domain {Thermus thermophilus [TaxId: 274]}
Length = 152
Score = 54.9 bits (131), Expect = 9e-12
Identities = 25/48 (52%), Positives = 36/48 (75%)
Query: 36 IQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 83
+ I + GG G+ ++PVEKL+RD K+ QIYEGT +IQRLI++R I+
Sbjct: 103 ANQAIQIHGGYGYVREFPVEKLLRDVKLNQIYEGTNEIQRLIIARHIL 150
Score = 49.9 bits (118), Expect = 8e-10
Identities = 22/37 (59%), Positives = 30/37 (81%)
Query: 5 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
+ GG G+ ++PVEKL+RD K+ QIYEGT +IQRLI+
Sbjct: 109 IHGGYGYVREFPVEKLLRDVKLNQIYEGTNEIQRLII 145
>d1jqia1 a.29.3.1 (A:235-387) Butyryl-CoA dehydrogenase, C-domain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 153
Score = 55.0 bits (131), Expect = 1e-11
Identities = 19/44 (43%), Positives = 33/44 (75%)
Query: 40 IVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 83
I + GG G+ ++ P E+ RDA+I +IYEGT++IQRL+++ ++
Sbjct: 106 IQILGGMGYVTEMPAERYYRDARITEIYEGTSEIQRLVIAGHLL 149
Score = 50.4 bits (119), Expect = 5e-10
Identities = 18/36 (50%), Positives = 28/36 (77%)
Query: 6 FGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
GG G+ ++ P E+ RDA+I +IYEGT++IQRL++
Sbjct: 109 LGGMGYVTEMPAERYYRDARITEIYEGTSEIQRLVI 144
>d1ivha1 a.29.3.1 (A:242-392) Isovaleryl-CoA dehydrogenase, C-domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 151
Score = 53.1 bits (126), Expect = 4e-11
Identities = 19/40 (47%), Positives = 33/40 (82%)
Query: 43 FGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAI 82
FGGNG+ +D+P+ + +RDAK+Y+I GT++++RL++ RA
Sbjct: 109 FGGNGYINDFPMGRFLRDAKLYEIGAGTSEVRRLVIGRAF 148
Score = 48.9 bits (115), Expect = 2e-09
Identities = 17/41 (41%), Positives = 31/41 (75%)
Query: 1 MSHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
FGGNG+ +D+P+ + +RDAK+Y+I GT++++RL++
Sbjct: 104 DGIQCFGGNGYINDFPMGRFLRDAKLYEIGAGTSEVRRLVI 144
>d2c12a1 a.29.3.1 (A:261-430) Nitroalkane oxidase {Fusarium
oxysporum [TaxId: 5507]}
Length = 170
Score = 51.5 bits (122), Expect = 3e-10
Identities = 8/61 (13%), Positives = 20/61 (32%), Gaps = 1/61 (1%)
Query: 27 YQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRL-IVSRAIIER 85
Y + + G + D +L+ + Y +++G R + R +
Sbjct: 101 YTTDVAVECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLFDGGNIGLRRRQMQRVMALE 160
Query: 86 N 86
+
Sbjct: 161 D 161
Score = 49.9 bits (118), Expect = 1e-09
Identities = 9/58 (15%), Positives = 23/58 (39%), Gaps = 6/58 (10%)
Query: 1 MSHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGT------AQIQRLIVVFGGNGFNSDY 52
+ G + D +L+ + Y +++G Q+QR++ + + + Y
Sbjct: 112 DAMKAVGMKSYAKDMSFPRLLNEVMCYPLFDGGNIGLRRRQMQRVMALEDYEPWAATY 169
>d2ddha1 a.29.3.2 (A:278-460) Peroxisomal acyl-CoA oxidase-II,
domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 183
Score = 51.4 bits (122), Expect = 4e-10
Identities = 10/62 (16%), Positives = 25/62 (40%)
Query: 24 AKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 83
K + + A I+ + GG+G++ + + +EG + L +R ++
Sbjct: 100 LKAFTTWTANAGIEECRMACGGHGYSHSSGIPNIYVTFTPACTFEGENTVMMLQTARFLM 159
Query: 84 ER 85
+
Sbjct: 160 KI 161
Score = 42.9 bits (100), Expect = 5e-07
Identities = 6/37 (16%), Positives = 13/37 (35%)
Query: 5 VFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
GG+G++ + + +EG + L
Sbjct: 118 ACGGHGYSHSSGIPNIYVTFTPACTFEGENTVMMLQT 154
>d1r2ja1 a.29.3.1 (A:213-365) Protein FkbI {Streptomyces
hygroscopicus [TaxId: 1912]}
Length = 153
Score = 50.0 bits (118), Expect = 7e-10
Identities = 11/41 (26%), Positives = 25/41 (60%)
Query: 43 FGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIVSRAII 83
G + VE+ RDAK+ +I EG++++ R+++++ +
Sbjct: 110 LASAGAREGHVVERAYRDAKLMEIIEGSSEMCRVMLAQHAL 150
Score = 45.8 bits (107), Expect = 3e-08
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 1 MSHGVFGGNGFNSDYPVEKLMRDAKIYQIYEGTAQIQRLIV 41
+ V G + VE+ RDAK+ +I EG++++ R+++
Sbjct: 105 TAAQVLASAGAREGHVVERAYRDAKLMEIIEGSSEMCRVML 145
>d1vk3a4 d.139.1.1 (A:508-603) Phosphoribosylformylglycinamidine
synthase II, domains 2 and 4 {Thermotoga maritima
[TaxId: 2336]}
Length = 96
Score = 24.9 bits (54), Expect = 0.81
Identities = 5/22 (22%), Positives = 12/22 (54%)
Query: 36 IQRLIVVFGGNGFNSDYPVEKL 57
++++VF D PV+++
Sbjct: 70 AHQMVLVFSERTPVVDVPVKEI 91
>d1gjwa2 c.1.8.1 (A:1-572) Maltosyltransferase {Thermotoga
maritima [TaxId: 2336]}
Length = 572
Score = 24.6 bits (52), Expect = 2.3
Identities = 7/63 (11%), Positives = 14/63 (22%), Gaps = 2/63 (3%)
Query: 7 GGNGFNSDYPVEKLMRD--AKIYQIYEGTAQIQRLIVVFGGNGFNSDYPVEKLMRDAKIY 64
G D + D +I + R F ++ + +Y
Sbjct: 28 PGFFKKFDEKSGRCFVDPYELGAEITDWILNQSREWDYSQPLSFLKGEKTPDWIKRSVVY 87
Query: 65 QIY 67
Sbjct: 88 GSL 90
>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA
{Aspergillus nidulans [TaxId: 162425]}
Length = 350
Score = 23.1 bits (48), Expect = 7.3
Identities = 4/12 (33%), Positives = 6/12 (50%)
Query: 37 QRLIVVFGGNGF 48
++ I V G G
Sbjct: 3 KKTIAVVGATGR 14
>d1ji1a3 c.1.8.1 (A:123-554) Maltogenic amylase, central domain
{Thermoactinomyces vulgaris, TVAI [TaxId: 2026]}
Length = 432
Score = 22.8 bits (47), Expect = 8.7
Identities = 3/17 (17%), Positives = 10/17 (58%)
Query: 14 DYPVEKLMRDAKIYQIY 30
++ +++ +YQI+
Sbjct: 1 NFKTPDWLKNGVMYQIF 17
Score = 22.8 bits (47), Expect = 8.7
Identities = 3/17 (17%), Positives = 10/17 (58%)
Query: 51 DYPVEKLMRDAKIYQIY 67
++ +++ +YQI+
Sbjct: 1 NFKTPDWLKNGVMYQIF 17
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.140 0.398
Gapped
Lambda K H
0.267 0.0425 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 334,371
Number of extensions: 13881
Number of successful extensions: 76
Number of sequences better than 10.0: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 33
Length of query: 87
Length of database: 2,407,596
Length adjustment: 52
Effective length of query: 35
Effective length of database: 1,693,636
Effective search space: 59277260
Effective search space used: 59277260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)