BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10338
(312 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MDD|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDD|B Chain B, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDE|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDE|B Chain B, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
Length = 385
Score = 144 bits (364), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 72/88 (81%), Positives = 74/88 (84%)
Query: 99 HIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGL 158
I E NMGQR SDTRGI FEDVRVPKENVL GEGAGFKIAM TFDKTRPPVAAGAVGL
Sbjct: 197 QIGRKEINMGQRCSDTRGIVFEDVRVPKENVLTGEGAGFKIAMGTFDKTRPPVAAGAVGL 256
Query: 159 AQRCLDEATKYALERKAFGVPIAAHQGM 186
AQR LDEATKYALERK FG +A HQG+
Sbjct: 257 AQRALDEATKYALERKTFGKLLAEHQGI 284
Score = 124 bits (310), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 66/131 (50%), Positives = 78/131 (59%), Gaps = 32/131 (24%)
Query: 193 VSIFEREIQLMLLGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTALEASGLG 252
V + +R +L L+ H F GGL L + D CL+ EELAYGCTG+ TA+EA+ LG
Sbjct: 40 VPLLKRAWELGLMNTHIPESF-----GGLGLGIIDSCLITEELAYGCTGVQTAIEANTLG 94
Query: 253 ---------------------------AYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQK 285
AYCVTEPGAGSDV G+KTKA KKGDE+I+NGQK
Sbjct: 95 QVPLIIGGNYQQQKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQK 154
Query: 286 MWITNGGVANW 296
MWITNGG ANW
Sbjct: 155 MWITNGGKANW 165
Score = 87.8 bits (216), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 46/75 (61%), Positives = 54/75 (72%)
Query: 46 FYSELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQ 105
F EL E Q+EFQA ARKF REEIIPVAAE+DRTGEYP ++K+A ELGL+N HIP S
Sbjct: 2 FSFELTEQQKEFQATARKFAREEIIPVAAEYDRTGEYPVPLLKRAWELGLMNTHIPESFG 61
Query: 106 NMGQRASDTRGITFE 120
+G D+ IT E
Sbjct: 62 GLGLGIIDSCLITEE 76
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 38/44 (86%)
Query: 1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQ 44
M TFDKTRPPVAAGAVGLAQR LDEATKYALERK FG +A HQ
Sbjct: 239 MGTFDKTRPPVAAGAVGLAQRALDEATKYALERKTFGKLLAEHQ 282
>pdb|1UDY|A Chain A, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|B Chain B, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|C Chain C, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|D Chain D, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
Length = 396
Score = 144 bits (364), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 72/88 (81%), Positives = 74/88 (84%)
Query: 99 HIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGL 158
I E NMGQR SDTRGI FEDVRVPKENVL GEGAGFKIAM TFDKTRPPVAAGAVGL
Sbjct: 207 QIGRKEINMGQRCSDTRGIVFEDVRVPKENVLTGEGAGFKIAMGTFDKTRPPVAAGAVGL 266
Query: 159 AQRCLDEATKYALERKAFGVPIAAHQGM 186
AQR LDEATKYALERK FG +A HQG+
Sbjct: 267 AQRALDEATKYALERKTFGKLLAEHQGI 294
Score = 124 bits (310), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 66/131 (50%), Positives = 78/131 (59%), Gaps = 32/131 (24%)
Query: 193 VSIFEREIQLMLLGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTALEASGLG 252
V + +R +L L+ H F GGL L + D CL+ EELAYGCTG+ TA+EA+ LG
Sbjct: 50 VPLLKRAWELGLMNTHIPESF-----GGLGLGIIDSCLITEELAYGCTGVQTAIEANTLG 104
Query: 253 ---------------------------AYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQK 285
AYCVTEPGAGSDV G+KTKA KKGDE+I+NGQK
Sbjct: 105 QVPLIIGGNYQQQKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQK 164
Query: 286 MWITNGGVANW 296
MWITNGG ANW
Sbjct: 165 MWITNGGKANW 175
Score = 87.8 bits (216), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 46/75 (61%), Positives = 54/75 (72%)
Query: 46 FYSELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQ 105
F EL E Q+EFQA ARKF REEIIPVAAE+DRTGEYP ++K+A ELGL+N HIP S
Sbjct: 12 FSFELTEQQKEFQATARKFAREEIIPVAAEYDRTGEYPVPLLKRAWELGLMNTHIPESFG 71
Query: 106 NMGQRASDTRGITFE 120
+G D+ IT E
Sbjct: 72 GLGLGIIDSCLITEE 86
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/44 (84%), Positives = 38/44 (86%)
Query: 1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQ 44
M TFDKTRPPVAAGAVGLAQR LDEATKYALERK FG +A HQ
Sbjct: 249 MGTFDKTRPPVAAGAVGLAQRALDEATKYALERKTFGKLLAEHQ 292
>pdb|1EGE|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1T9G|A Chain A, Structure Of The Human Mcad:etf Complex
pdb|1T9G|B Chain B, Structure Of The Human Mcad:etf Complex
pdb|1T9G|C Chain C, Structure Of The Human Mcad:etf Complex
pdb|1T9G|D Chain D, Structure Of The Human Mcad:etf Complex
Length = 396
Score = 133 bits (334), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 65/88 (73%), Positives = 71/88 (80%)
Query: 99 HIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGL 158
I E NMGQR SDTRGI FEDV+VPKENVL+G+GAGFK+AM FDKTRP VAAGAVGL
Sbjct: 207 QIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFKVAMGAFDKTRPVVAAGAVGL 266
Query: 159 AQRCLDEATKYALERKAFGVPIAAHQGM 186
AQR LDEATKYALERK FG + HQ +
Sbjct: 267 AQRALDEATKYALERKTFGKLLVEHQAI 294
Score = 124 bits (310), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 73/151 (48%), Positives = 87/151 (57%), Gaps = 43/151 (28%)
Query: 178 VPIAAHQGMYLKI-QY-VSIFEREIQLMLLGVH---NCNVFLVSVSGGLELSVFDGCLVA 232
+P+AA Y K +Y V + R +L L+ H NC GGL L FD CL++
Sbjct: 36 IPVAAE---YDKTGEYPVPLIRRAWELGLMNTHIPENC--------GGLGLGTFDACLIS 84
Query: 233 EELAYGCTGIMTALEASGLG---------------------------AYCVTEPGAGSDV 265
EELAYGCTG+ TA+E + LG AYCVTEPGAGSDV
Sbjct: 85 EELAYGCTGVQTAIEGNSLGQMPIIIAGNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDV 144
Query: 266 NGVKTKAVKKGDEWILNGQKMWITNGGVANW 296
G+KTKA KKGDE+I+NGQKMWITNGG ANW
Sbjct: 145 AGIKTKAEKKGDEYIINGQKMWITNGGKANW 175
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 37/56 (66%), Positives = 45/56 (80%)
Query: 46 FYSELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIP 101
F E E Q+EFQA ARKF REEIIPVAAE+D+TGEYP ++++A ELGL+N HIP
Sbjct: 12 FSFEFTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWELGLMNTHIP 67
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/62 (62%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Query: 1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQEFQAL 60
M FDKTRP VAAGAVGLAQR LDEATKYALERK FG + HQ L E + + L
Sbjct: 249 MGAFDKTRPVVAAGAVGLAQRALDEATKYALERKTFGKLLVEHQAISFMLAEMAMKVE-L 307
Query: 61 AR 62
AR
Sbjct: 308 AR 309
>pdb|2A1T|A Chain A, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|B Chain B, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|C Chain C, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|D Chain D, Structure Of The Human Mcad:etf E165betaa Complex
Length = 421
Score = 133 bits (334), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 65/88 (73%), Positives = 71/88 (80%)
Query: 99 HIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGL 158
I E NMGQR SDTRGI FEDV+VPKENVL+G+GAGFK+AM FDKTRP VAAGAVGL
Sbjct: 232 QIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFKVAMGAFDKTRPVVAAGAVGL 291
Query: 159 AQRCLDEATKYALERKAFGVPIAAHQGM 186
AQR LDEATKYALERK FG + HQ +
Sbjct: 292 AQRALDEATKYALERKTFGKLLVEHQAI 319
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 73/151 (48%), Positives = 87/151 (57%), Gaps = 43/151 (28%)
Query: 178 VPIAAHQGMYLKI-QY-VSIFEREIQLMLLGVH---NCNVFLVSVSGGLELSVFDGCLVA 232
+P+AA Y K +Y V + R +L L+ H NC GGL L FD CL++
Sbjct: 61 IPVAAE---YDKTGEYPVPLIRRAWELGLMNTHIPENC--------GGLGLGTFDACLIS 109
Query: 233 EELAYGCTGIMTALEASGLG---------------------------AYCVTEPGAGSDV 265
EELAYGCTG+ TA+E + LG AYCVTEPGAGSDV
Sbjct: 110 EELAYGCTGVQTAIEGNSLGQMPIIIAGNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDV 169
Query: 266 NGVKTKAVKKGDEWILNGQKMWITNGGVANW 296
G+KTKA KKGDE+I+NGQKMWITNGG ANW
Sbjct: 170 AGIKTKAEKKGDEYIINGQKMWITNGGKANW 200
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 48/63 (76%)
Query: 46 FYSELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQ 105
F E E Q+EFQA ARKF REEIIPVAAE+D+TGEYP ++++A ELGL+N HIP +
Sbjct: 37 FSFEFTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWELGLMNTHIPENCG 96
Query: 106 NMG 108
+G
Sbjct: 97 GLG 99
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/62 (62%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Query: 1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQEFQAL 60
M FDKTRP VAAGAVGLAQR LDEATKYALERK FG + HQ L E + + L
Sbjct: 274 MGAFDKTRPVVAAGAVGLAQRALDEATKYALERKTFGKLLVEHQAISFMLAEMAMKVE-L 332
Query: 61 AR 62
AR
Sbjct: 333 AR 334
>pdb|1EGD|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGC|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
Length = 396
Score = 130 bits (328), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 64/88 (72%), Positives = 70/88 (79%)
Query: 99 HIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGL 158
I E NMGQR SDTRGI FEDV+VPKENVL+G+GAGFK+AM FDK RP VAAGAVGL
Sbjct: 207 QIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFKVAMGAFDKERPVVAAGAVGL 266
Query: 159 AQRCLDEATKYALERKAFGVPIAAHQGM 186
AQR LDEATKYALERK FG + HQ +
Sbjct: 267 AQRALDEATKYALERKTFGKLLVEHQAI 294
Score = 124 bits (310), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 73/151 (48%), Positives = 87/151 (57%), Gaps = 43/151 (28%)
Query: 178 VPIAAHQGMYLKI-QY-VSIFEREIQLMLLGVH---NCNVFLVSVSGGLELSVFDGCLVA 232
+P+AA Y K +Y V + R +L L+ H NC GGL L FD CL++
Sbjct: 36 IPVAAE---YDKTGEYPVPLIRRAWELGLMNTHIPENC--------GGLGLGTFDACLIS 84
Query: 233 EELAYGCTGIMTALEASGLG---------------------------AYCVTEPGAGSDV 265
EELAYGCTG+ TA+E + LG AYCVTEPGAGSDV
Sbjct: 85 EELAYGCTGVQTAIEGNSLGQMPIIIAGNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDV 144
Query: 266 NGVKTKAVKKGDEWILNGQKMWITNGGVANW 296
G+KTKA KKGDE+I+NGQKMWITNGG ANW
Sbjct: 145 AGIKTKAEKKGDEYIINGQKMWITNGGKANW 175
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 37/56 (66%), Positives = 45/56 (80%)
Query: 46 FYSELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIP 101
F E E Q+EFQA ARKF REEIIPVAAE+D+TGEYP ++++A ELGL+N HIP
Sbjct: 12 FSFEFTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWELGLMNTHIP 67
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/62 (61%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Query: 1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQEFQAL 60
M FDK RP VAAGAVGLAQR LDEATKYALERK FG + HQ L E + + L
Sbjct: 249 MGAFDKERPVVAAGAVGLAQRALDEATKYALERKTFGKLLVEHQAISFMLAEMAMKVE-L 307
Query: 61 AR 62
AR
Sbjct: 308 AR 309
>pdb|1UKW|A Chain A, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase
From Thermus Thermophilus Hb8
pdb|1UKW|B Chain B, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase
From Thermus Thermophilus Hb8
Length = 379
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/85 (63%), Positives = 63/85 (74%)
Query: 106 NMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDE 165
MGQRAS T + FEDV+VP EN L EG GFKIAM T +KTR PVAAG+VG+A+R LDE
Sbjct: 200 KMGQRASGTYELVFEDVKVPVENRLGEEGEGFKIAMQTLNKTRIPVAAGSVGVARRALDE 259
Query: 166 ATKYALERKAFGVPIAAHQGMYLKI 190
A KYA ER+AFG PIA Q + K+
Sbjct: 260 ARKYAKEREAFGEPIANFQAIQFKL 284
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 58/114 (50%), Gaps = 27/114 (23%)
Query: 210 CNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTALEASGLG----------------- 252
N + GG+ L + D +V EELAY C GI T AS LG
Sbjct: 51 LNAIIPEEYGGMGLKMLDEVIVGEELAYACMGIYTIPMASDLGITPVLLAGTEEQKERFL 110
Query: 253 ----------AYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANW 296
A+ ++EPG GSD +KT+A+++GD ++LNG KMWI+NGG A W
Sbjct: 111 RPLTEKPALAAFALSEPGNGSDAAALKTRAIRQGDHYVLNGTKMWISNGGEAEW 164
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 42/64 (65%)
Query: 50 LNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQ 109
L E Q++ QALAR+F +E I+PVA E+D E PW +++K HE+GL+N IP MG
Sbjct: 5 LTEEQRQLQALARRFAKEVILPVAQEYDEKEEVPWPVIEKLHEVGLLNAIIPEEYGGMGL 64
Query: 110 RASD 113
+ D
Sbjct: 65 KMLD 68
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 37/50 (74%)
Query: 1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSEL 50
M T +KTR PVAAG+VG+A+R LDEA KYA ER+AFG PIA Q +L
Sbjct: 235 MQTLNKTRIPVAAGSVGVARRALDEARKYAKEREAFGEPIANFQAIQFKL 284
>pdb|1JQI|A Chain A, Crystal Structure Of Rat Short Chain Acyl-Coa
Dehydrogenase Complexed With Acetoacetyl-Coa
pdb|1JQI|B Chain B, Crystal Structure Of Rat Short Chain Acyl-Coa
Dehydrogenase Complexed With Acetoacetyl-Coa
Length = 388
Score = 84.7 bits (208), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 60/100 (60%)
Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCL 163
E +G RAS T + FED R+PKEN+L G GFKIAM T D R +A+ A+G+AQ L
Sbjct: 204 EDKLGIRASSTANLIFEDCRIPKENLLGEPGMGFKIAMQTLDMGRIGIASQALGIAQASL 263
Query: 164 DEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLM 203
D A KYA R AFG P+ Q + K+ +++ +L+
Sbjct: 264 DCAVKYAENRHAFGAPLTKLQNIQFKLADMALALESARLL 303
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 218 SGGLELSVFDGCLVAEELAYGCTG-----IMTALEASGLGAYCVTEPGAGSDVNGVKTKA 272
S G+ +SV + + L +G + I +G + ++EPG GSD T A
Sbjct: 87 STGVIMSVNNSLYLGPILKFGSSQQKQQWITPFTNGDKIGCFALSEPGNGSDAGAASTTA 146
Query: 273 VKKGDEWILNGQKMWITN 290
++GD W+LNG K WITN
Sbjct: 147 REEGDSWVLNGTKAWITN 164
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 43 HQVFYS-ELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIP 101
H V+ S EL ET Q + R F +E++P+AA+ D+ +P VKK ELGL+ +P
Sbjct: 2 HSVYQSVELPETHQMLRQTCRDFAEKELVPIAAQLDKEHLFPTSQVKKMGELGLLAMDVP 61
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 26/44 (59%)
Query: 1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQ 44
M T D R +A+ A+G+AQ LD A KYA R AFG P+ Q
Sbjct: 241 MQTLDMGRIGIASQALGIAQASLDCAVKYAENRHAFGAPLTKLQ 284
>pdb|2VIG|A Chain A, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|B Chain B, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|C Chain C, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|D Chain D, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|E Chain E, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|F Chain F, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|G Chain G, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|H Chain H, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
Length = 391
Score = 77.4 bits (189), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 58/100 (58%)
Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCL 163
E +G R S T + FED R+PK+++L G GFKIAM T D R +A+ A+G+AQ L
Sbjct: 200 EDKLGIRGSSTANLIFEDCRIPKDSILGEPGMGFKIAMQTLDMGRIGIASQALGIAQTAL 259
Query: 164 DEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLM 203
D A YA R AFG P+ Q + K+ +++ +L+
Sbjct: 260 DCAVNYAENRMAFGAPLTKLQVIQFKLADMALALESARLL 299
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 26/40 (65%)
Query: 251 LGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITN 290
+G + ++EPG GSD T A +GD W+LNG K WITN
Sbjct: 121 IGCFALSEPGNGSDAGAASTTARAEGDSWVLNGTKAWITN 160
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 29/52 (55%)
Query: 1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNE 52
M T D R +A+ A+G+AQ LD A YA R AFG P+ QV +L +
Sbjct: 237 MQTLDMGRIGIASQALGIAQTALDCAVNYAENRMAFGAPLTKLQVIQFKLAD 288
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 49 ELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIP 101
EL ET Q R F +E+ P+AA+ D+ +P VKK LGL+ +P
Sbjct: 5 ELPETHQMLLQTCRDFAEKELFPIAAQVDKEHLFPAAQVKKMGGLGLLAMDVP 57
>pdb|3PFD|A Chain A, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|B Chain B, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|C Chain C, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|D Chain D, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
Length = 393
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 60/101 (59%)
Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCL 163
E+ +G + S T + FE+ R+P + ++ G GFK A+ T D TRP + A AVG+AQ L
Sbjct: 212 ERKLGIKGSPTTELYFENCRIPGDRIIGEPGTGFKTALATLDHTRPTIGAQAVGIAQGAL 271
Query: 164 DEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLML 204
D A Y ERK FG P++ +QG+ + +++ +LM+
Sbjct: 272 DAAIAYTKERKQFGRPVSDNQGVQFMLADMAMKIEAARLMV 312
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 33/46 (71%)
Query: 251 LGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANW 296
+ +Y ++E AGSD ++T+AV GD+WILNG K WITNGG + W
Sbjct: 133 MASYALSEREAGSDAASMRTRAVADGDDWILNGSKCWITNGGKSTW 178
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQEFQAL 60
+ T D TRP + A AVG+AQ LD A Y ERK FG P++ +Q L + + +A
Sbjct: 249 LATLDHTRPTIGAQAVGIAQGALDAAIAYTKERKQFGRPVSDNQGVQFMLADMAMKIEA- 307
Query: 61 ARKFCREEIIPVAAEHDRTGEYPWGIVKKAHE 92
R + AA +R GE G + A +
Sbjct: 308 ----ARLMVYSAAARAER-GEGDLGFISAASK 334
>pdb|1BUC|A Chain A, Three-Dimensional Structure Of Butyryl-Coa Dehydrogenase
From Megasphaera Elsdenii
pdb|1BUC|B Chain B, Three-Dimensional Structure Of Butyryl-Coa Dehydrogenase
From Megasphaera Elsdenii
Length = 383
Score = 74.3 bits (181), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 53/87 (60%)
Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCL 163
E MG S T + F+DV+VP EN+L EG GFKIAM T D R VAA A+G+A+ L
Sbjct: 203 EDKMGIHTSQTMELVFQDVKVPAENMLGEEGKGFKIAMMTLDGGRIGVAAQALGIAEAAL 262
Query: 164 DEATKYALERKAFGVPIAAHQGMYLKI 190
+A +Y+ +R FG P+ Q + K+
Sbjct: 263 ADAVEYSKQRVQFGKPLCKFQSISFKL 289
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Query: 246 LEASGLGAYCVTEPGAGSDVNGVKTKAVKKGD-EWILNGQKMWITNGGVAN 295
+E + LGA+ +TEP AG+D +G +T A K D + LNG K++ITNGG A+
Sbjct: 118 VEGTKLGAFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKIFITNGGAAD 168
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%)
Query: 1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQEFQA 59
M T D R VAA A+G+A+ L +A +Y+ +R FG P+ Q +L + + + +A
Sbjct: 240 MMTLDGGRIGVAAQALGIAEAALADAVEYSKQRVQFGKPLCKFQSISFKLADMKMQIEA 298
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 50 LNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHI 100
L + QQ+F LA F +++ P E D G Y ++ + LG+ +
Sbjct: 5 LTDIQQDFLKLAHDFGEKKLAPTVTERDHKGIYDKELIDELLSLGITGAYF 55
>pdb|3MPI|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|B Chain B, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|C Chain C, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|D Chain D, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPJ|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|B Chain B, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|D Chain D, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|E Chain E, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|F Chain F, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|G Chain G, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Length = 397
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 48/80 (60%)
Query: 105 QNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLD 164
+ +G AS T + ++V+VPKEN+L G G +I + + TR AAG VGLAQ CLD
Sbjct: 203 EKLGSHASPTGELFLDNVKVPKENILGKPGDGARIVFGSLNHTRLSAAAGGVGLAQACLD 262
Query: 165 EATKYALERKAFGVPIAAHQ 184
A KY ER+ FG PI Q
Sbjct: 263 AAIKYCNERRQFGKPIGDFQ 282
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 30/45 (66%)
Query: 251 LGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVAN 295
LG + +TEP AGSDV + + A KGD W+LNG K WI+N A+
Sbjct: 123 LGGFGITEPDAGSDVMAMSSTAEDKGDHWLLNGSKTWISNAAQAD 167
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 27/43 (62%)
Query: 3 TFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQV 45
+ + TR AAG VGLAQ CLD A KY ER+ FG PI Q+
Sbjct: 241 SLNHTRLSAAAGGVGLAQACLDAAIKYCNERRQFGKPIGDFQM 283
>pdb|2Z1Q|A Chain A, Crystal Structure Of Acyl Coa Dehydrogenase
pdb|2Z1Q|B Chain B, Crystal Structure Of Acyl Coa Dehydrogenase
Length = 577
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 49/77 (63%)
Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCL 163
E+ MG +AS TR + EDV+VP ENVL G G KIA + + R + AGAVG A+R L
Sbjct: 220 EKKMGIKASSTRQVILEDVKVPVENVLGEIGKGHKIAFNVLNVGRYKLGAGAVGGAKRAL 279
Query: 164 DEATKYALERKAFGVPI 180
+ + +YA +R FG PI
Sbjct: 280 ELSAQYATQRVQFGRPI 296
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 51/106 (48%), Gaps = 29/106 (27%)
Query: 219 GGLELSVFDGCLVAEELA--------YGCTGIMTALE-----------------ASG--L 251
GGL+L +VAEEL+ YG + L ASG +
Sbjct: 84 GGLDLPKVISTVVAEELSGSGGFSVTYGAHTSIGTLPLVYFGTEEQKRKYLPKLASGEWI 143
Query: 252 GAYCVTEPGAGSDVNGVKTKAV--KKGDEWILNGQKMWITNGGVAN 295
AYC+TEPG+GSD KT+A + G +ILNG K WI+N G A+
Sbjct: 144 AAYCLTEPGSGSDALAAKTRATLSEDGKHYILNGVKQWISNAGFAH 189
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQEFQA 59
+ + R + AGAVG A+R L+ + +YA +R FG PI + +L E A
Sbjct: 257 FNVLNVGRYKLGAGAVGGAKRALELSAQYATQRVQFGRPIGRFGLIQQKLGEMASRIYA 315
>pdb|2JIF|A Chain A, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|B Chain B, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|C Chain C, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|D Chain D, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
Length = 404
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 56/96 (58%)
Query: 99 HIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGL 158
HI E +G RAS T +TFE+V+VP+ N+L G G+K A+ + ++ R +AA +GL
Sbjct: 217 HIGKPENKLGLRASSTCPLTFENVKVPEANILGQIGHGYKYAIGSLNEGRIGIAAQMLGL 276
Query: 159 AQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVS 194
AQ C D Y ER FG + QG+ ++ +V+
Sbjct: 277 AQGCFDYTIPYIKERIQFGKRLFDFQGLQHQVAHVA 312
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 34/45 (75%)
Query: 246 LEASGLGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITN 290
L +G++C++E GAGSD +KT+A K+GD ++LNG KMWI++
Sbjct: 138 LTTEKVGSFCLSEAGAGSDSFALKTRADKEGDYYVLNGSKMWISS 182
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 3 TFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFG 37
+ ++ R +AA +GLAQ C D Y ER FG
Sbjct: 261 SLNEGRIGIAAQMLGLAQGCFDYTIPYIKERIQFG 295
>pdb|3NF4|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Flavin Adenine
Dinucleotide
pdb|3NF4|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Flavin Adenine
Dinucleotide
Length = 387
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 57/112 (50%), Gaps = 6/112 (5%)
Query: 78 RTGEYPWGI---VKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEG 134
RTGE G+ + A + GL G E+ MG A T +++ R+ + + EG
Sbjct: 181 RTGEGSRGVSCFLVPADQPGLSFGK---PEEKMGLHAVPTTSAFYDNARIDADRRIGEEG 237
Query: 135 AGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGM 186
G +IA D R +AA A GLAQ LDEA YA ER AFG I HQG+
Sbjct: 238 QGLQIAFSALDSGRLGIAAVATGLAQAALDEAVAYANERTAFGRKIIDHQGL 289
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 246 LEASGLGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANW 296
L +GAY ++EP AGSD ++ A +++NG K WIT+GG A++
Sbjct: 125 LSGEQIGAYSLSEPQAGSDAAALRCAATPTDGGYVINGSKSWITHGGKADF 175
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 24/41 (58%)
Query: 4 FDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQ 44
D R +AA A GLAQ LDEA YA ER AFG I HQ
Sbjct: 247 LDSGRLGIAAVATGLAQAALDEAVAYANERTAFGRKIIDHQ 287
>pdb|2DVL|A Chain A, Crystal Structure Of Project Tt0160 From Thermus
Thermophilus Hb8
pdb|2DVL|B Chain B, Crystal Structure Of Project Tt0160 From Thermus
Thermophilus Hb8
Length = 372
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 49/87 (56%)
Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCL 163
E+ MG A+ T + E+V VP+EN+L EG G A+ D R VAA AVG+A+
Sbjct: 192 EEKMGLHAAHTAEVRLEEVFVPEENLLGEEGRGLAYALAGLDSGRVGVAAQAVGIARGAF 251
Query: 164 DEATKYALERKAFGVPIAAHQGMYLKI 190
+ A YA ER+ FG + HQ + KI
Sbjct: 252 EIAKAYAEEREQFGKKLKEHQAIAFKI 278
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 31/45 (68%)
Query: 251 LGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVAN 295
+GA+C+TEP AGSD ++ +A + ++LNG K WIT+ G A+
Sbjct: 118 IGAFCLTEPQAGSDAKSLRAEARRVKGGFVLNGVKSWITSAGHAH 162
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%)
Query: 50 LNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIP 101
L + Q+ R+ RE + P+A E+DR EYPW +K ELGL+ P
Sbjct: 3 LTQEQRLVLDAVRRVAREVLYPLAPEYDRKAEYPWPQLKALAELGLLGMTTP 54
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 4 FDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQEFQALARK 63
D R VAA AVG+A+ + A YA ER+ FG + HQ ++ + + A
Sbjct: 232 LDSGRVGVAAQAVGIARGAFEIAKAYAEEREQFGKKLKEHQAIAFKIADMHVKIAA---- 287
Query: 64 FCREEIIPVAAEHDR 78
R ++ A + DR
Sbjct: 288 -ARALVLEAARKKDR 301
>pdb|3SF6|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis
Length = 403
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 34/45 (75%)
Query: 251 LGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVAN 295
+G + +TEP GSD G++T+A + GD+WIL G KMWITNG VA+
Sbjct: 145 IGCFGLTEPDHGSDPAGMRTRATRSGDDWILTGTKMWITNGSVAD 189
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 47/117 (40%), Gaps = 4/117 (3%)
Query: 68 EIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKE 127
+ VA RT E G V G I + M RAS T + + VR+P
Sbjct: 186 SVADVAVVWARTDEGIRGFVVPTDTPGFTANTI---KSKMSLRASVTSELVLDGVRLPDS 242
Query: 128 NVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQ 184
L G + ++ R + GA+G A+ CL+ A YA R+ F PI Q
Sbjct: 243 ARLPG-ATSLGAPLRCLNEARFGIVFGALGAARDCLETALAYACSREQFDRPIGGFQ 298
Score = 34.7 bits (78), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 4 FDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQEF 57
++ R + GA+G A+ CL+ A YA R+ F PI Q+ +L + E+
Sbjct: 258 LNEARFGIVFGALGAARDCLETALAYACSREQFDRPIGGFQLTQQKLADMTLEY 311
>pdb|3R7K|A Chain A, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|B Chain B, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|C Chain C, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|D Chain D, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
Length = 403
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 46/84 (54%)
Query: 107 MGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEA 166
MG R SDT ++F DVRVP +N++ E +GF M F R +A A A R LD A
Sbjct: 226 MGWRCSDTAELSFVDVRVPADNLVGAENSGFLQIMQQFQAERLGIAVQAYATAGRALDLA 285
Query: 167 TKYALERKAFGVPIAAHQGMYLKI 190
+A ER+ FG P+ Q + K+
Sbjct: 286 KSWARERETFGRPLTGRQIIRHKL 309
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 42/60 (70%), Gaps = 2/60 (3%)
Query: 251 LGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFRYEKPGH 310
+G+ VTEPGAGSDV ++T+AV++GD +++NG K +IT+G A++ T R PG+
Sbjct: 145 IGSLGVTEPGAGSDVANLRTRAVREGDTYVVNGAKTFITSGVRADFV--TTAVRTGGPGY 202
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 27/56 (48%)
Query: 1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQE 56
M F R +A A A R LD A +A ER+ FG P+ Q+ +L E ++
Sbjct: 260 MQQFQAERLGIAVQAYATAGRALDLAKSWARERETFGRPLTGRQIIRHKLAEMARQ 315
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 29/65 (44%)
Query: 54 QQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASD 113
++ +AR F EI P AE + GE P + A E+GL+ P G A D
Sbjct: 33 RRALSQMARSFVEREIAPKLAEWEHVGEIPRDLHLNAAEVGLLGIGFPEEVGGSGGNAID 92
Query: 114 TRGIT 118
+ +T
Sbjct: 93 SALVT 97
>pdb|3OIB|A Chain A, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis, Iodide Soak
pdb|3OIB|B Chain B, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis, Iodide Soak
pdb|3P4T|A Chain A, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis
pdb|3P4T|B Chain B, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis
Length = 403
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 49/102 (48%), Gaps = 7/102 (6%)
Query: 106 NMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDE 165
MG R+SDT +++ DVRVP N++ E GF F R +A A AQRCLD
Sbjct: 222 KMGWRSSDTAELSYTDVRVPVANLVGSENTGFAQIAAAFVAERVGLATQAYAGAQRCLDL 281
Query: 166 ATKYALERKAFGVPIAAHQ-------GMYLKIQYVSIFEREI 200
++ R FG P+ + Q GM +I ++ R +
Sbjct: 282 TVEWCRNRDTFGRPLISRQAVQNTLAGMARRIDVARVYTRHV 323
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 6/84 (7%)
Query: 219 GGLELSVFD-GCLVAEELAYGC-----TGIMTALEASGLGAYCVTEPGAGSDVNGVKTKA 272
GG+ S+F G V +A G T + L +GA +TEPG GSDV ++T+A
Sbjct: 104 GGVYASLFTCGIAVPHMIASGDQRLIDTYVRPTLRGEKIGALAITEPGGGSDVGHLRTRA 163
Query: 273 VKKGDEWILNGQKMWITNGGVANW 296
GD +++NG K +IT+G A++
Sbjct: 164 DLDGDHYVINGAKTYITSGVRADY 187
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 54 QQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIP 101
++ + R F E++P A E +R GE P + +KA ELGL+ P
Sbjct: 30 REALRKTVRAFAEREVLPHAHEWERAGEIPRELHRKAAELGLLGAGFP 77
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 4 FDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQEFQALARK 63
F R +A A AQRCLD ++ R FG P+ + Q + L + +AR
Sbjct: 260 FVAERVGLATQAYAGAQRCLDLTVEWCRNRDTFGRPLISRQAVQNTLAGMARRID-VARV 318
Query: 64 FCREEI 69
+ R +
Sbjct: 319 YTRHVV 324
>pdb|3SWO|A Chain A, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|B Chain B, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|C Chain C, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|D Chain D, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
Length = 399
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 34/45 (75%)
Query: 251 LGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVAN 295
+G + +TEP GS+ G++T+A + G +WILNG KMWITNG +A+
Sbjct: 140 IGCFGLTEPDFGSNPAGMRTRARRDGSDWILNGTKMWITNGNLAD 184
>pdb|2EBA|A Chain A, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|C Chain C, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|D Chain D, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|E Chain E, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|F Chain F, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|G Chain G, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|H Chain H, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|I Chain I, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
Length = 385
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 35/46 (76%), Gaps = 1/46 (2%)
Query: 251 LGAYCVTEPGAGSDVNG-VKTKAVKKGDEWILNGQKMWITNGGVAN 295
+G + +TEP GSD G +KT+A ++GD W+LNG KMWITNG +A+
Sbjct: 126 VGCFGLTEPDGGSDPYGNMKTRARREGDTWVLNGTKMWITNGNLAH 171
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCL 163
++ M RAS T + E+VRVP E++ L + G K + + R +A GA+G +
Sbjct: 202 KRKMSLRASVTSELVLEEVRVP-ESLRLPKALGLKAPLSCLTQARFGIAWGAMGALEAVY 260
Query: 164 DEATKYALERKAFGVPIAAHQGMYLKI 190
+EA +A R FG P+A Q + K+
Sbjct: 261 EEAVAFAKSRSTFGEPLAKKQLVQAKL 287
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNE 52
+ + R +A GA+G + +EA +A R FG P+A Q+ ++L E
Sbjct: 238 LSCLTQARFGIAWGAMGALEAVYEEAVAFAKSRSTFGEPLAKKQLVQAKLAE 289
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 34/75 (45%)
Query: 50 LNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQ 109
L ++E Q AR+F +E +P + G +P ++ + ELG + +P G
Sbjct: 11 LTPEEKEVQKAARRFLEKEALPHIRDWWEEGVFPTHLIPRFAELGFLGPTLPPEYGGAGV 70
Query: 110 RASDTRGITFEDVRV 124
++ I +E RV
Sbjct: 71 SSAAYGLICYELERV 85
>pdb|3EOM|A Chain A, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|B Chain B, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|C Chain C, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|D Chain D, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EON|A Chain A, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|B Chain B, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|C Chain C, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|D Chain D, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3II9|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
Length = 396
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 57/107 (53%), Gaps = 4/107 (3%)
Query: 101 PASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQ 160
PA +G RAS T I ++ VP+EN+L G + + R +A GA+G A+
Sbjct: 209 PAIHGKVGLRASITGEIVLDEAFVPEENIL-PHVKGLRGPFTCLNSARYGIAWGALGAAE 267
Query: 161 RCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLLGV 207
C A +Y L+RK FG P+AA+Q + K+ + + EI L L GV
Sbjct: 268 SCWHIARQYVLDRKQFGRPLAANQLIQKKL---ADMQTEITLGLQGV 311
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%)
Query: 4 FDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQEF 57
+ R +A GA+G A+ C A +Y L+RK FG P+AA+Q+ +L + Q E
Sbjct: 251 LNSARYGIAWGALGAAESCWHIARQYVLDRKQFGRPLAANQLIQKKLADMQTEI 304
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 251 LGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVAN----WQNRTRDFRYE 306
+G + +TEP GSD + T+A K + L+G KMWITN +A+ W D R E
Sbjct: 134 IGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWITNSPIADVFVVWAKLDEDGRDE 193
Query: 307 KPG 309
G
Sbjct: 194 IRG 196
>pdb|3GQT|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GNC|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
Length = 399
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 57/107 (53%), Gaps = 4/107 (3%)
Query: 101 PASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQ 160
PA +G RAS T I ++ VP+EN+L G + + R +A GA+G A+
Sbjct: 212 PAIHGKVGLRASITGEIVLDEAFVPEENIL-PHVKGLRGPFTCLNSARYGIAWGALGAAE 270
Query: 161 RCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLLGV 207
C A +Y L+RK FG P+AA+Q + K+ + + EI L L GV
Sbjct: 271 SCWHIARQYVLDRKQFGRPLAANQLIQKKL---ADMQTEITLGLQGV 314
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%)
Query: 4 FDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQEF 57
+ R +A GA+G A+ C A +Y L+RK FG P+AA+Q+ +L + Q E
Sbjct: 254 LNSARYGIAWGALGAAESCWHIARQYVLDRKQFGRPLAANQLIQKKLADMQTEI 307
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 251 LGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVAN----WQNRTRDFRYE 306
+G + +TEP GSD + T+A K + L+G KMWITN +A+ W D R E
Sbjct: 137 IGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWITNSPIADVFVVWAKLDEDGRDE 196
Query: 307 KPG 309
G
Sbjct: 197 IRG 199
>pdb|3D6B|A Chain A, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|B Chain B, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|C Chain C, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|D Chain D, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
Length = 395
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 57/107 (53%), Gaps = 4/107 (3%)
Query: 101 PASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQ 160
PA +G RAS T I ++ VP+EN+L G + + R +A GA+G A+
Sbjct: 208 PAIHGKVGLRASITGEIVLDEAFVPEENIL-PHVKGLRGPFTCLNSARYGIAWGALGAAE 266
Query: 161 RCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLLGV 207
C A +Y L+RK FG P+AA+Q + K+ + + EI L L GV
Sbjct: 267 SCWHIARQYVLDRKQFGRPLAANQLIQKKL---ADMQTEITLGLQGV 310
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%)
Query: 4 FDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQEF 57
+ R +A GA+G A+ C A +Y L+RK FG P+AA+Q+ +L + Q E
Sbjct: 250 LNSARYGIAWGALGAAESCWHIARQYVLDRKQFGRPLAANQLIQKKLADMQTEI 303
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 251 LGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVAN----WQNRTRDFRYE 306
+G + +TEP GSD + T+A K + L+G KMWITN +A+ W D R E
Sbjct: 133 IGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWITNSPIADVFVVWAKLDEDGRDE 192
Query: 307 KPG 309
G
Sbjct: 193 IRG 195
>pdb|2UXW|A Chain A, Crystal Structure Of Human Very Long Chain Acyl-coa
Dehydrogenase (acadvl)
Length = 607
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 44/77 (57%)
Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCL 163
E+ MG +AS+T + F+ VRVP ENVL G+GFK+AM + R +AA G + +
Sbjct: 249 EKKMGIKASNTAEVFFDGVRVPSENVLGEVGSGFKVAMHILNNGRFGMAAALAGTMRGII 308
Query: 164 DEATKYALERKAFGVPI 180
+A +A R FG I
Sbjct: 309 AKAVDHATNRTQFGEKI 325
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 73/157 (46%), Gaps = 17/157 (10%)
Query: 144 FDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGM--YLKIQYVSIFEREIQ 201
F++ P A+ + + + K E AFG+ + + G QY + E
Sbjct: 65 FEEVNDPAKNDALEMVEETTWQGLK---ELGAFGLQVPSELGGVGLCNTQYARLVE---- 117
Query: 202 LMLLGVHNCNVFLVSVSGGLELSV-FDGCLVAEELAYGCTGIMTALEASGLGAYCVTEPG 260
++G+H+ V ++ G S+ F G L+ A + + A+C+TEP
Sbjct: 118 --IVGMHDLGV---GITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFCLTEPS 172
Query: 261 AGSDVNGVKTKAVKK--GDEWILNGQKMWITNGGVAN 295
+GSD ++T AV G + LNG K+WI+NGG+A+
Sbjct: 173 SGSDAASIRTSAVPSPCGKYYTLNGSKLWISNGGLAD 209
>pdb|3B96|A Chain A, Structural Basis For Substrate Fatty-Acyl Chain
Specificity: Crystal Structure Of Human Very-Long-Chain
Acyl-Coa Dehydrogenase
Length = 587
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 44/77 (57%)
Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCL 163
E+ MG +AS+T + F+ VRVP ENVL G+GFK+AM + R +AA G + +
Sbjct: 229 EKKMGIKASNTAEVFFDGVRVPSENVLGEVGSGFKVAMHILNNGRFGMAAALAGTMRGII 288
Query: 164 DEATKYALERKAFGVPI 180
+A +A R FG I
Sbjct: 289 AKAVDHATNRTQFGEKI 305
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 73/157 (46%), Gaps = 17/157 (10%)
Query: 144 FDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGM--YLKIQYVSIFEREIQ 201
F++ P A+ + + + K E AFG+ + + G QY + E
Sbjct: 45 FEEVNDPAKNDALEMVEETTWQGLK---ELGAFGLQVPSELGGVGLCNTQYARLVE---- 97
Query: 202 LMLLGVHNCNVFLVSVSGGLELSV-FDGCLVAEELAYGCTGIMTALEASGLGAYCVTEPG 260
++G+H+ V ++ G S+ F G L+ A + + A+C+TEP
Sbjct: 98 --IVGMHDLGV---GITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFCLTEPS 152
Query: 261 AGSDVNGVKTKAVKK--GDEWILNGQKMWITNGGVAN 295
+GSD ++T AV G + LNG K+WI+NGG+A+
Sbjct: 153 SGSDAASIRTSAVPSPCGKYYTLNGSKLWISNGGLAD 189
>pdb|1IVH|A Chain A, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|B Chain B, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|C Chain C, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|D Chain D, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
Length = 394
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/41 (60%), Positives = 31/41 (75%)
Query: 251 LGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNG 291
+GA ++EP AGSDV +K KA KKG+ +ILNG K WITNG
Sbjct: 130 IGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNG 170
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 42/84 (50%)
Query: 107 MGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEA 166
+G R S+T + FED ++P N+L E G + M D R +A G +GL Q LD
Sbjct: 214 LGMRGSNTCELIFEDCKIPAANILGHENKGVYVLMSGLDLERLVLAGGPLGLMQAVLDHT 273
Query: 167 TKYALERKAFGVPIAAHQGMYLKI 190
Y R+AFG I Q M K+
Sbjct: 274 IPYLHVREAFGQKIGHFQLMQGKM 297
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 5/77 (6%)
Query: 1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQEFQAL 60
M D R +A G +GL Q LD Y R+AFG I Q+ ++ + A
Sbjct: 248 MSGLDLERLVLAGGPLGLMQAVLDHTIPYLHVREAFGQKIGHFQLMQGKMADMYTRLMA- 306
Query: 61 ARKFCREEIIPVAAEHD 77
CR+ + VA D
Sbjct: 307 ----CRQYVYNVAKACD 319
>pdb|3OWA|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|C Chain C, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|D Chain D, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
Length = 597
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGE-GAGFKIAMDTFDKTRPPVAAGAVGLAQRC 162
E+ G + S TR + ED VPKEN LLGE G G IA + + R + G VG A+R
Sbjct: 225 EKKXGIKCSSTRTLILEDALVPKEN-LLGEIGKGHIIAFNILNIGRYKLGVGTVGSAKRA 283
Query: 163 LDEATKYALERKAFGVPIA 181
++ + +YA +R+ F PIA
Sbjct: 284 VEISAQYANQRQQFKQPIA 302
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 251 LGAYCVTEPGAGSDVNGVKTKAV--KKGDEWILNGQKMWITNGGVAN 295
L AY +TEPG+GSD G KT A +G ++LNG+K WITN A+
Sbjct: 148 LAAYALTEPGSGSDALGAKTTARLNAEGTHYVLNGEKQWITNSAFAD 194
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 8 RPPVAAGAVGLAQRCLDEATKYALERKAFGVPIA 41
R + G VG A+R ++ + +YA +R+ F PIA
Sbjct: 269 RYKLGVGTVGSAKRAVEISAQYANQRQQFKQPIA 302
>pdb|1RX0|A Chain A, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|B Chain B, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|C Chain C, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|D Chain D, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND
Length = 393
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 48/108 (44%), Gaps = 27/108 (25%)
Query: 212 VFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTALEASGLGA------------------ 253
V++ + GG LS D ++ E LA GCT + + A
Sbjct: 67 VYIQTDVGGSGLSRLDTSVIFEALATGCTSTTAYISIHNMCAWMIDSFGNEEQRHKFCPP 126
Query: 254 ---------YCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGG 292
YC+TEPG+GSD + T A K+GD +ILNG K +I+ G
Sbjct: 127 LCTMEKFASYCLTEPGSGSDAASLLTSAKKQGDHYILNGSKAFISGAG 174
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 61/135 (45%), Gaps = 3/135 (2%)
Query: 80 GEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKI 139
G P GI E G E+ +G + TR + FED VP N + EG GF I
Sbjct: 187 GPGPKGISCIVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGSEGQGFLI 246
Query: 140 AMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFERE 199
A+ + R +A+ ++G A + + RK FG P+A++Q YL+ + R
Sbjct: 247 AVRGLNGGRINIASCSLGAAHASVILTRDHLNVRKQFGEPLASNQ--YLQFTLADMATRL 304
Query: 200 IQLMLLGVHNCNVFL 214
+ L+ V N V L
Sbjct: 305 VAARLM-VRNAAVAL 318
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 50 LNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQ 109
LNE Q+EFQ +A F E+ P AE D+ +P +++KA +LG +I G
Sbjct: 19 LNEEQKEFQKVAFDFAAREMAPNMAEWDQKELFPVDVMRKAAQLGFGGVYIQTDVGGSGL 78
Query: 110 RASDTRGITFE 120
DT + FE
Sbjct: 79 SRLDT-SVIFE 88
>pdb|1WS9|A Chain A, Crystal Structure Of Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|1WS9|B Chain B, Crystal Structure Of Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|2CX9|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|C Chain C, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|D Chain D, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2D29|A Chain A, Structural Study On Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|2D29|B Chain B, Structural Study On Project Id Tt0172 From Thermus
Thermophilus Hb8
Length = 387
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 49/86 (56%)
Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCL 163
E+ +G ASDT + ED+ VP+E +L G GF + D R +AA AVGL Q L
Sbjct: 205 EEKLGLTASDTAQLILEDLFVPEEALLGERGKGFYDVLRVLDGGRIGIAAMAVGLGQAAL 264
Query: 164 DEATKYALERKAFGVPIAAHQGMYLK 189
D A YA R+AFG PIA +G+ K
Sbjct: 265 DYALAYAKGREAFGRPIAEFEGVSFK 290
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Query: 248 ASG--LGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVAN 295
ASG LGA+ +TEPG+GSD +KTKA K W LNG K +IT G VA
Sbjct: 117 ASGEALGAWGLTEPGSGSDAAALKTKAEKVEGGWRLNGTKQFITQGSVAG 166
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 50 LNETQQEFQALA--RKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIP 101
E +E Q L R+F + E+ P AAE DRTG +PW +V+K E G+ +P
Sbjct: 5 FEEGAEERQVLGPFREFLKAEVAPGAAERDRTGAFPWDLVRKLAEFGVFGALVP 58
>pdb|1SIR|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa
Dehydrogenase
pdb|2R0N|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa
Dehydrogenase On Proton Transfer To The Dienolate
Intermediate
Length = 394
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 56/114 (49%), Gaps = 15/114 (13%)
Query: 101 PASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQ 160
P + RAS T I + V VP+ENVL G + + R +A G +G ++
Sbjct: 204 PRIQGKFSLRASATGMIIMDGVEVPEENVLPG-ASSLGGPFGCLNNARYGIAWGVLGASE 262
Query: 161 RCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLML----LGVHNC 210
CL A +YAL+R FGVP+A +Q + ++++ ML LG+H C
Sbjct: 263 FCLHTARQYALDRMQFGVPLARNQ----------LIQKKLADMLTEITLGLHAC 306
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%)
Query: 4 FDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQEF 57
+ R +A G +G ++ CL A +YAL+R FGVP+A +Q+ +L + E
Sbjct: 246 LNNARYGIAWGVLGASEFCLHTARQYALDRMQFGVPLARNQLIQKKLADMLTEI 299
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 251 LGAYCVTEPGAGSDVNGVKTKA--VKKGDEWILNGQKMWITNGGVAN 295
LG + +TEP +GSD + ++T+A + LNG K WITN +A+
Sbjct: 130 LGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMAD 176
>pdb|1SIQ|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa
Dehydrogenase
Length = 392
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 56/114 (49%), Gaps = 15/114 (13%)
Query: 101 PASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQ 160
P + RAS T I + V VP+ENVL G + + R +A G +G ++
Sbjct: 202 PRIQGKFSLRASATGMIIMDGVEVPEENVLPG-ASSLGGPFGCLNNARYGIAWGVLGASE 260
Query: 161 RCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLML----LGVHNC 210
CL A +YAL+R FGVP+A +Q + ++++ ML LG+H C
Sbjct: 261 FCLHTARQYALDRMQFGVPLARNQ----------LIQKKLADMLTEITLGLHAC 304
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%)
Query: 4 FDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQEF 57
+ R +A G +G ++ CL A +YAL+R FGVP+A +Q+ +L + E
Sbjct: 244 LNNARYGIAWGVLGASEFCLHTARQYALDRMQFGVPLARNQLIQKKLADMLTEI 297
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 251 LGAYCVTEPGAGSDVNGVKTKA--VKKGDEWILNGQKMWITNGGVAN 295
LG + +TEP +GSD + ++T+A + LNG K WITN +A+
Sbjct: 128 LGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMAD 174
>pdb|2R0M|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa
Dehydrogenase On Proton Transfer To The Dienolate
Intermediate
Length = 394
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 56/114 (49%), Gaps = 15/114 (13%)
Query: 101 PASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQ 160
P + RAS T I + V VP+ENVL G + + R +A G +G ++
Sbjct: 204 PRIQGKFSLRASATGMIIMDGVEVPEENVLPG-ASSLGGPFGCLNNARYGIAWGVLGASE 262
Query: 161 RCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLML----LGVHNC 210
CL A +YAL+R FGVP+A +Q + ++++ ML LG+H C
Sbjct: 263 FCLHTARQYALDRMQFGVPLARNQ----------LIQKKLADMLTEITLGLHAC 306
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%)
Query: 4 FDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQEF 57
+ R +A G +G ++ CL A +YAL+R FGVP+A +Q+ +L + E
Sbjct: 246 LNNARYGIAWGVLGASEFCLHTARQYALDRMQFGVPLARNQLIQKKLADMLTEI 299
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 251 LGAYCVTEPGAGSDVNGVKTKA--VKKGDEWILNGQKMWITNGGVAN 295
LG + +TEP +GSD + ++T+A + LNG K WITN +A+
Sbjct: 130 LGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMAD 176
>pdb|2PG0|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From
Geobacillus Kaustophilus
pdb|2PG0|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase From
Geobacillus Kaustophilus
Length = 385
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/41 (58%), Positives = 31/41 (75%)
Query: 251 LGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNG 291
+ A +TEPGAGSD+ + T AVK GD +I+NGQK +ITNG
Sbjct: 124 ITAIAMTEPGAGSDLANISTTAVKDGDYYIVNGQKTFITNG 164
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%)
Query: 105 QNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLD 164
+ +G A DT + F+D +VP N+L EG GF M+ + R VA A A+
Sbjct: 206 EKVGLHAQDTAELFFQDAKVPAYNLLGEEGKGFYYLMEKLQQERLVVAIAAQTAAEVMFS 265
Query: 165 EATKYALERKAFGVPIAAHQGMYLKI 190
+Y +R AFG ++ Q + ++
Sbjct: 266 LTKQYVKQRTAFGKRVSEFQTVQFRL 291
>pdb|4HR3|A Chain A, Structure Of A Putative Acyl-Coa Dehydrogenase From
Mycobacterium Abscessus
Length = 415
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 47/89 (52%)
Query: 117 ITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAF 176
++F++VR+P + + G G GF+IA R A +GLA+ L+ A + L+R AF
Sbjct: 241 VSFDNVRLPADAFIAGPGKGFEIAQGRLGPGRVHHAMRLIGLAEVALEHACRRGLDRTAF 300
Query: 177 GVPIAAHQGMYLKIQYVSIFEREIQLMLL 205
G P+ G +I I + +L++L
Sbjct: 301 GKPLVNLGGNRERIADARIAINQTRLLVL 329
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 246 LEASGLGAYCVTEPG-AGSDVNGVKTKAVKKGDEWILNGQKMWITNGG 292
LE A+C+TEP A SD + AV +GDE ++NG+K W T G
Sbjct: 138 LEGDIRSAFCMTEPDVASSDATNMAATAVVEGDEVVINGRKWWSTGVG 185
>pdb|2WBI|A Chain A, Crystal Structure Of Human Acyl-Coa Dehydrogenase 11
pdb|2WBI|B Chain B, Crystal Structure Of Human Acyl-Coa Dehydrogenase 11
Length = 428
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 45/89 (50%)
Query: 117 ITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAF 176
I F VRVP N++LGEG GF+I+ R VGLA+R L + A +R AF
Sbjct: 249 IHFNQVRVPATNLILGEGRGFEISQGRLGPGRIHHCMRTVGLAERALQIMCERATQRIAF 308
Query: 177 GVPIAAHQGMYLKIQYVSIFEREIQLMLL 205
+ AH+ + I I +I+L+ L
Sbjct: 309 KKKLYAHEVVAHWIAESRIAIEKIRLLTL 337
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 46/112 (41%), Gaps = 33/112 (29%)
Query: 211 NVFLVSVSGGLELSVFDGCLVAEEL--------AYGC----TGIMTALEASG-------- 250
N+FL +VSG LS D L+AEE + C TG M L G
Sbjct: 83 NLFLPAVSG---LSHVDYALIAEETGKCFFAPDVFNCQAPDTGNMEVLHLYGSEEQKKQW 139
Query: 251 ---------LGAYCVTEPG-AGSDVNGVKTKAVKKGDEWILNGQKMWITNGG 292
+C+TEP A SD ++ + D +++NG+K W + G
Sbjct: 140 LEPLLQGNITSCFCMTEPDVASSDATNIECSIQRDEDSYVINGKKWWSSGAG 191
>pdb|3MKH|A Chain A, Podospora Anserina Nitroalkane Oxidase
pdb|3MKH|B Chain B, Podospora Anserina Nitroalkane Oxidase
pdb|3MKH|C Chain C, Podospora Anserina Nitroalkane Oxidase
pdb|3MKH|D Chain D, Podospora Anserina Nitroalkane Oxidase
Length = 438
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 76/193 (39%), Gaps = 19/193 (9%)
Query: 69 IIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKEN 128
I+ A+ DR GE + +++ GH S + + + +VRVP +N
Sbjct: 209 ILVTRADLDRNGEGSFEVLRHVA----TPGHTSVSGPH----------VRYTNVRVPTKN 254
Query: 129 VLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFG-VPIAAHQGMY 187
VL G G K+A FD + V A VGL + D A K+A E G VP+ Q
Sbjct: 255 VLCPAGQGAKVAFGAFDGSAVLVGAMGVGLMRAAFDAALKFAKEDNRGGAVPLLERQAFA 314
Query: 188 LKIQYVSI-FEREIQLMLLGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTAL 246
+ V I E L H EL++ +E CT ++ A+
Sbjct: 315 DLLSGVKIQTEAARALTWKAAHAMENGPGDYDARRELALAAKVFCSEAAVKACTDVINAV 374
Query: 247 EASGLGAYCVTEP 259
G+ AY + P
Sbjct: 375 ---GISAYDLQRP 384
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Query: 247 EASGLGAYCVTEPGAGSDV-----NGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTR 301
E S L + +EPG ++ G +T A +GDEW++NG+KMW TN A W +
Sbjct: 125 EGSPLASLVFSEPGGVANALEKGAPGFQTTARLEGDEWVINGEKMWATN--CAGWDFKGC 182
Query: 302 DF 303
D
Sbjct: 183 DL 184
>pdb|1R2J|A Chain A, Fkbi For Biosynthesis Of Methoxymalonyl Extender Unit Of
Fk520 Polyketide Immunosuppresant
Length = 366
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 108 GQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMD-TFDKTRPPVAAGAVGLAQRCLDEA 166
G RA+ + + VRVP VL G GA + + + R VA G VG+ + C A
Sbjct: 185 GCRAAGHADLHLDQVRVPAGAVLAGSGASLPMLVAASLAYGRKSVAWGCVGILRACRTAA 244
Query: 167 TKYALERKAFGVPIAAHQ 184
+A R+ FG P+ HQ
Sbjct: 245 VAHARTREQFGRPLGDHQ 262
Score = 34.3 bits (77), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 246 LEASGLGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVAN 295
L + L A +E AGSD++ ++T+ GD +++G K+W T A+
Sbjct: 101 LTSGKLAAVGFSERQAGSDLSAMRTRVRLDGDTAVVDGHKVWTTAAAYAD 150
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%)
Query: 8 RPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQEFQALAR 62
R VA G VG+ + C A +A R+ FG P+ HQ+ + + Q AR
Sbjct: 226 RKSVAWGCVGILRACRTAAVAHARTREQFGRPLGDHQLVAGHIADLWTAEQIAAR 280
>pdb|2IX5|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|B Chain B, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|C Chain C, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|D Chain D, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
Length = 436
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 55/129 (42%), Gaps = 6/129 (4%)
Query: 85 GIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTF 144
G + K GL IP +G R I ++V VP E+ L G + F+
Sbjct: 229 GFIVKKDAPGLKATKIP---NKIGLRMVQNGDILLQNVFVPDEDRLPGVNS-FQDTSKVL 284
Query: 145 DKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLML 204
+R VA +G++ D +Y ERK FG P+AA Q K+ V + + L
Sbjct: 285 AVSRVMVAWQPIGISMGIYDMCHRYLKERKQFGAPLAAFQLNQQKL--VQMLGNVQAMFL 342
Query: 205 LGVHNCNVF 213
+G C ++
Sbjct: 343 MGWRLCKLY 351
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 26/45 (57%)
Query: 251 LGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVAN 295
+ + +TEP GSD +G+ T A K W +NGQK WI N A+
Sbjct: 169 VACWALTEPDNGSDASGLGTTATKVEGGWKINGQKRWIGNSTFAD 213
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 7 TRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQEFQAL 60
+R VA +G++ D +Y ERK FG P+AA Q+ +L + QA+
Sbjct: 287 SRVMVAWQPIGISMGIYDMCHRYLKERKQFGAPLAAFQLNQQKLVQMLGNVQAM 340
>pdb|2IX6|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|B Chain B, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|C Chain C, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|D Chain D, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|E Chain E, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|F Chain F, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
Length = 449
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 55/129 (42%), Gaps = 6/129 (4%)
Query: 85 GIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTF 144
G + K GL IP +G R I ++V VP E+ L G + F+
Sbjct: 229 GFIVKKDAPGLKATKIP---NKIGLRMVQNGDILLQNVFVPDEDRLPGVNS-FQDTSKVL 284
Query: 145 DKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLML 204
+R VA +G++ D +Y ERK FG P+AA Q K+ V + + L
Sbjct: 285 AVSRVMVAWQPIGISMGIYDMCHRYLKERKQFGAPLAAFQLNQQKL--VQMLGNVQAMFL 342
Query: 205 LGVHNCNVF 213
+G C ++
Sbjct: 343 MGWRLCKLY 351
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 26/45 (57%)
Query: 251 LGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVAN 295
+ + +TEP GSD +G+ T A K W +NGQK WI N A+
Sbjct: 169 VACWALTEPDNGSDASGLGTTATKVEGGWKINGQKRWIGNSTFAD 213
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 7 TRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQEFQAL 60
+R VA +G++ D +Y ERK FG P+AA Q+ +L + QA+
Sbjct: 287 SRVMVAWQPIGISMGIYDMCHRYLKERKQFGAPLAAFQLNQQKLVQMLGNVQAM 340
>pdb|2C0U|A Chain A, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
pdb|2C0U|B Chain B, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
pdb|2C0U|C Chain C, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
pdb|2C0U|D Chain D, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
Length = 439
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 267 GVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDF 303
G++T A K G+EW+++G+K+W +N G W + D
Sbjct: 149 GLQTTARKVGNEWVISGEKLWPSNSG--GWDYKGADL 183
>pdb|2REH|A Chain A, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2REH|B Chain B, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2REH|C Chain C, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2REH|D Chain D, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
Length = 439
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 267 GVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDF 303
G++T A K G+EW+++G+K+W +N G W + D
Sbjct: 149 GLQTTARKVGNEWVISGEKLWPSNSG--GWDYKGADL 183
>pdb|3D9F|A Chain A, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
pdb|3D9F|B Chain B, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
pdb|3D9F|C Chain C, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
pdb|3D9F|D Chain D, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
Length = 438
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 267 GVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDF 303
G++T A K G+EW+++G+K+W +N G W + D
Sbjct: 148 GLQTTARKVGNEWVISGEKLWPSNSG--GWDYKGADL 182
>pdb|2ZAF|A Chain A, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2ZAF|B Chain B, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2ZAF|C Chain C, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2ZAF|D Chain D, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
Length = 439
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 267 GVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDF 303
G++T A K G+EW+++G+K+W +N G W + D
Sbjct: 149 GLQTTARKVGNEWVISGEKLWPSNSG--GWDYKGADL 183
>pdb|2C12|A Chain A, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|B Chain B, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|C Chain C, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|D Chain D, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|E Chain E, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|F Chain F, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
Length = 439
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 267 GVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDF 303
G++T A K G+EW+++G+K+W +N G W + D
Sbjct: 149 GLQTTARKVGNEWVISGEKLWPSNSG--GWDYKGADL 183
>pdb|3D9G|A Chain A, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
pdb|3D9G|B Chain B, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
pdb|3D9G|C Chain C, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
pdb|3D9G|D Chain D, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
Length = 438
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 267 GVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDF 303
G++T A K G+EW+++G+K+W +N G W + D
Sbjct: 148 GLQTTARKVGNEWVISGEKLWPSNSG--GWDYKGADL 182
>pdb|3D9D|A Chain A, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9D|B Chain B, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9D|C Chain C, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9D|D Chain D, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9E|A Chain A, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3D9E|B Chain B, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3D9E|C Chain C, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3D9E|D Chain D, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3FCJ|A Chain A, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
pdb|3FCJ|B Chain B, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
pdb|3FCJ|C Chain C, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
pdb|3FCJ|D Chain D, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
Length = 438
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 267 GVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDF 303
G++T A K G+EW+++G+K+W +N G W + D
Sbjct: 148 GLQTTARKVGNEWVISGEKLWPSNSG--GWDYKGADL 182
>pdb|1UG9|A Chain A, Crystal Structure Of Glucodextranase From Arthrobacter
Globiformis I42
pdb|1ULV|A Chain A, Crystal Structure Of Glucodextranase Complexed With
Acarbose
Length = 1020
Score = 34.7 bits (78), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 7/100 (7%)
Query: 155 AVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLLGVHNCNVFL 214
A+ Q D A ++ L + P + L + + + + QL +L + L
Sbjct: 86 ALSYRQTTTDNAGRWRLTKTYVTDP--RRSTVMLGVTFEVLDGGDYQLFVL----SDPSL 139
Query: 215 VSVSGGLELSVFDGCLVAEELAYGCTGIMTALEAS-GLGA 253
SGG SV DG L+A +LA T + TAL +S G GA
Sbjct: 140 AGTSGGDTGSVTDGALLASDLADAATPVATALVSSVGFGA 179
>pdb|1IHC|A Chain A, X-Ray Structure Of Gephyrin N-Terminal Domain
Length = 188
Score = 30.8 bits (68), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 16/130 (12%)
Query: 85 GIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTF 144
G++ H+ + G + S+ A D GI +D+ V ++L G + +KI D
Sbjct: 5 GMILTNHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDL-VQDPSLLGGTISAYKIVPDEI 63
Query: 145 DKTRPPV-------------AAGAVGLAQR-CLDEATKYALERKAFGVPIAAHQGMYLKI 190
++ + + G G A R EATK +ER+A G+ +A G L +
Sbjct: 64 EEIKETLIDWCDEKELNLILTTGGTGFAPRDVTPEATKEVIEREAPGMALAMLMG-SLNV 122
Query: 191 QYVSIFEREI 200
+ + R +
Sbjct: 123 TPLGMLSRPV 132
>pdb|1JLJ|A Chain A, 1.6 Angstrom Crystal Structure Of The Human Neuroreceptor
Anchoring And Molybdenum Cofactor Biosynthesis Protein
Gephyrin
pdb|1JLJ|B Chain B, 1.6 Angstrom Crystal Structure Of The Human Neuroreceptor
Anchoring And Molybdenum Cofactor Biosynthesis Protein
Gephyrin
pdb|1JLJ|C Chain C, 1.6 Angstrom Crystal Structure Of The Human Neuroreceptor
Anchoring And Molybdenum Cofactor Biosynthesis Protein
Gephyrin
Length = 189
Score = 30.8 bits (68), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 16/130 (12%)
Query: 85 GIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTF 144
G++ H+ + G + S+ A D GI +D+ V ++L G + +KI D
Sbjct: 5 GMILTNHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDL-VQDPSLLGGTISAYKIVPDEI 63
Query: 145 DKTRPPV-------------AAGAVGLAQR-CLDEATKYALERKAFGVPIAAHQGMYLKI 190
++ + + G G A R EATK +ER+A G+ +A G L +
Sbjct: 64 EEIKETLIDWCDEKELNLILTTGGTGFAPRDVTPEATKEVIEREAPGMALAMLMG-SLNV 122
Query: 191 QYVSIFEREI 200
+ + R +
Sbjct: 123 TPLGMLSRPV 132
>pdb|3M9V|A Chain A, X-Ray Structure Of A Kijd3 In Complex With Dtdp
Length = 439
Score = 30.8 bits (68), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 107 MGQRASDTRGITFEDVRVPKENVLLGEGAGFK----IAMDTFDKTRPPVAAGAVGLAQRC 162
+G RAS T I F+D +P ++VL+ + G + +A T V VG+AQ
Sbjct: 217 LGMRASGTVDIVFDDCPIPADHVLMRDPVGARNDAVLAGQTVSSVS--VLGVYVGVAQAA 274
Query: 163 LDEATKYALERK 174
D A ALER+
Sbjct: 275 YDTAVA-ALERR 285
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 68 EIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMG 108
I AAEHDR G +P + GL+ +PA +G
Sbjct: 37 RIRSTAAEHDRDGTFPTDTFDALRKDGLMGATVPAELGGLG 77
>pdb|3PO4|A Chain A, Structure Of A Mutant Of The Large Fragment Of Dna
Polymerase I From Thermus Aquaticus In Complex With A
Blunt-Ended Dna And Ddatp
pdb|3PO5|A Chain A, Structure Of A Mutant Of The Large Fragment Of Dna
Polymerase I From Thermus Auqaticus In Complex With An
Abasic Site And Ddatp
pdb|3PY8|A Chain A, Crystal Structure Of A Mutant Of The Large Fragment Of Dna
Polymerase I From Thermus Aquaticus In A Closed Ternary
Complex With Dna And Ddctp
Length = 540
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 165 EATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQL---MLLGVHNCNVF 213
++ + A ERKAF +P+ +K+ V +F R ++ MLL VH+ V
Sbjct: 446 KSVREAAERKAFNMPVQGTAADLMKLAMVKLFPRLEEMGARMLLQVHDELVL 497
>pdb|1EG7|A Chain A, The Crystal Structure Of Formyltetrahydrofolate Synthetase
From Moorella Thermoacetica
pdb|1EG7|B Chain B, The Crystal Structure Of Formyltetrahydrofolate Synthetase
From Moorella Thermoacetica
Length = 557
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 235 LAYGCTGIMTALEASGLGAYCVTEPGAGSDVNGVKTKAVK 274
+A+GC I+ A L Y VTE G G+D+ K VK
Sbjct: 278 IAHGCNSIIATKTALKLADYVVTEAGFGADLGAEKFYDVK 317
>pdb|1FPM|A Chain A, Monovalent Cation Binding Sites In
N10-formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|1FPM|B Chain B, Monovalent Cation Binding Sites In
N10-formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|1FP7|A Chain A, Monovalent Cation Binding Sites In
N10-Formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|1FP7|B Chain B, Monovalent Cation Binding Sites In
N10-Formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|3PZX|A Chain A, Native Crystal Structure Of N10-Formyltetrahydrofolate
Synthetase
pdb|3PZX|B Chain B, Native Crystal Structure Of N10-Formyltetrahydrofolate
Synthetase
pdb|3QB6|A Chain A, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Folate
pdb|3QB6|B Chain B, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Folate
pdb|3RBO|A Chain A, Crystal Structure Of N10-Formyltetrahydrofolate Synthetase
With Adp And Formylphosphate
pdb|3RBO|B Chain B, Crystal Structure Of N10-Formyltetrahydrofolate Synthetase
With Adp And Formylphosphate
pdb|3SIN|A Chain A, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Zd9331 And Formylphosphate
pdb|3SIN|B Chain B, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Zd9331 And Formylphosphate
pdb|3QUS|A Chain A, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Atpgs
pdb|3QUS|B Chain B, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Atpgs
Length = 557
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 235 LAYGCTGIMTALEASGLGAYCVTEPGAGSDVNGVKTKAVK 274
+A+GC I+ A L Y VTE G G+D+ K VK
Sbjct: 278 IAHGCNSIIATKTALKLADYVVTEAGFGADLGAEKFYDVK 317
>pdb|3MXL|A Chain A, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
pdb|3MXL|B Chain B, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
pdb|3MXL|C Chain C, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
pdb|3MXL|D Chain D, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
Length = 395
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 73 AAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMG 108
AA+ DRTG +P ++ +LGL+ +PA +G
Sbjct: 31 AADRDRTGTFPVEAFEQFAKLGLMGATVPAELGGLG 66
>pdb|2CU2|A Chain A, Crystal Structure Of Mannose-1-Phosphate
Geranyltransferase From Thermus Thermophilus Hb8
Length = 337
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 8/61 (13%)
Query: 84 WGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDT 143
+G+++KA + ++ G P + + R + + P ENV+LGEG +A+DT
Sbjct: 235 YGVMEKAERVRVVLGRFPWDD------VGNWRALERVFSQDPHENVVLGEGR--HVALDT 286
Query: 144 F 144
F
Sbjct: 287 F 287
>pdb|1E4F|T Chain T, Ftsa (Apo Form) From Thermotoga Maritima
pdb|4A2A|A Chain A, Thermotoga Maritima Ftsa:ftsz(336-351)
pdb|4A2A|B Chain B, Thermotoga Maritima Ftsa:ftsz(336-351)
pdb|4A2B|A Chain A, Thermotoga Maritima Ftsa With Atp Gamma S
Length = 419
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 25 EATKYALERKAFGVPIAAHQVFYSELNET-QQEFQALARKFCREEIIPVAAEHDR 78
+A+K A+E + VP+ +++FY+ L +T + FQ + E + E DR
Sbjct: 152 KASKIAIEYTSIVVPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLTTPEKDR 206
>pdb|1W07|A Chain A, Arabidopsis Thaliana Acyl-Coa Oxidase 1
pdb|1W07|B Chain B, Arabidopsis Thaliana Acyl-Coa Oxidase 1
Length = 659
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 251 LGAYCVTEPGAGSDVNGVKTKAV--KKGDEWILN 282
+G Y TE G GS+V G++T A K DE++++
Sbjct: 132 IGCYAQTELGHGSNVQGLETTATLDPKTDEFVIH 165
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,516,041
Number of Sequences: 62578
Number of extensions: 388743
Number of successful extensions: 967
Number of sequences better than 100.0: 62
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 783
Number of HSP's gapped (non-prelim): 167
length of query: 312
length of database: 14,973,337
effective HSP length: 99
effective length of query: 213
effective length of database: 8,778,115
effective search space: 1869738495
effective search space used: 1869738495
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)