Query psy10338
Match_columns 312
No_of_seqs 372 out of 2201
Neff 9.0
Searched_HMMs 46136
Date Fri Aug 16 15:25:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10338.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10338hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0140|consensus 100.0 1.7E-30 3.7E-35 222.6 11.8 146 47-306 25-197 (408)
2 KOG0139|consensus 100.0 3.6E-30 7.8E-35 224.0 11.3 148 49-196 36-322 (398)
3 KOG0141|consensus 100.0 1.8E-29 3.9E-34 216.5 13.4 148 47-308 38-215 (421)
4 PRK03354 crotonobetainyl-CoA d 99.9 1.4E-24 3.1E-29 202.3 16.9 144 46-303 1-171 (380)
5 cd01151 GCD Glutaryl-CoA dehyd 99.9 2.7E-24 5.8E-29 200.9 16.8 144 46-304 9-180 (386)
6 TIGR03203 pimD_small pimeloyl- 99.9 5.6E-24 1.2E-28 198.0 16.5 144 47-304 1-172 (378)
7 PRK12341 putative acyl-CoA deh 99.9 2.2E-23 4.7E-28 194.4 16.9 145 46-304 1-172 (381)
8 cd01157 MCAD Medium chain acyl 99.9 1.8E-23 3.9E-28 194.8 15.8 142 50-305 1-169 (378)
9 PLN02519 isovaleryl-CoA dehydr 99.9 3.1E-23 6.8E-28 194.8 17.1 146 45-304 21-196 (404)
10 TIGR03204 pimC_large pimeloyl- 99.9 2.5E-23 5.4E-28 194.8 15.9 144 47-304 1-175 (395)
11 PLN02526 acyl-coenzyme A oxida 99.9 3.9E-23 8.5E-28 194.5 16.7 154 36-304 15-196 (412)
12 TIGR03207 cyc_hxne_CoA_dh cycl 99.9 4.1E-23 8.9E-28 192.0 16.4 141 50-304 1-168 (372)
13 cd01156 IVD Isovaleryl-CoA deh 99.9 1.1E-22 2.3E-27 189.4 16.4 141 50-304 2-170 (376)
14 cd01162 IBD Isobutyryl-CoA deh 99.9 1.7E-22 3.6E-27 188.1 16.3 140 50-303 1-167 (375)
15 PTZ00461 isovaleryl-CoA dehydr 99.9 2.1E-22 4.6E-27 189.5 15.8 144 46-303 32-205 (410)
16 cd01160 LCAD Long chain acyl-C 99.9 3.5E-22 7.7E-27 185.7 15.3 141 52-306 1-168 (372)
17 cd01161 VLCAD Very long chain 99.9 4.9E-22 1.1E-26 187.0 15.6 144 44-304 21-194 (409)
18 KOG0139|consensus 99.9 7.9E-23 1.7E-27 178.4 5.8 119 190-308 63-208 (398)
19 PRK09463 fadE acyl-CoA dehydro 99.9 1.5E-21 3.3E-26 193.1 12.7 172 5-302 44-253 (777)
20 cd01158 SCAD_SBCAD Short chain 99.9 4.6E-21 1E-25 178.2 15.2 140 52-305 1-168 (373)
21 KOG0138|consensus 99.9 3.5E-21 7.6E-26 165.2 12.1 170 46-302 51-222 (432)
22 cd01152 ACAD_fadE6_17_26 Putat 99.8 8.4E-21 1.8E-25 177.0 12.4 140 52-305 1-172 (380)
23 COG1960 CaiA Acyl-CoA dehydrog 99.8 2.9E-20 6.2E-25 174.2 15.0 147 46-306 1-182 (393)
24 PRK13026 acyl-CoA dehydrogenas 99.8 1.2E-20 2.6E-25 186.2 12.2 175 5-305 43-256 (774)
25 cd01153 ACAD_fadE5 Putative ac 99.8 1.6E-19 3.5E-24 169.8 14.4 133 58-304 2-176 (407)
26 cd01155 ACAD_FadE2 Acyl-CoA de 99.8 2E-19 4.3E-24 168.5 14.0 137 54-304 3-182 (394)
27 PTZ00456 acyl-CoA dehydrogenas 99.8 4.2E-19 9E-24 173.6 14.7 62 244-305 175-241 (622)
28 PLN02876 acyl-CoA dehydrogenas 99.8 6E-19 1.3E-23 179.0 16.1 168 48-305 400-608 (822)
29 cd01163 DszC Dibenzothiophene 99.8 8.1E-18 1.8E-22 156.7 12.8 85 217-303 44-155 (377)
30 KOG0140|consensus 99.7 7.2E-18 1.6E-22 145.3 7.9 104 93-196 213-316 (408)
31 KOG0141|consensus 99.7 3.4E-18 7.3E-23 147.4 1.5 107 89-195 224-330 (421)
32 PF02770 Acyl-CoA_dh_M: Acyl-C 99.7 7.9E-17 1.7E-21 106.1 6.4 51 253-303 1-51 (52)
33 KOG0137|consensus 99.7 1.3E-16 2.8E-21 148.2 9.6 93 103-195 277-369 (634)
34 PLN02636 acyl-coenzyme A oxida 99.7 3.2E-16 7E-21 154.8 12.0 60 245-304 168-235 (686)
35 cd01159 NcnH Naphthocyclinone 99.7 3.1E-16 6.6E-21 145.8 9.6 88 217-304 44-145 (370)
36 cd01154 AidB Proteins involved 99.6 1.8E-15 4E-20 142.7 12.6 59 250-309 147-206 (418)
37 PTZ00457 acyl-CoA dehydrogenas 99.6 1.9E-14 4.1E-19 137.4 12.0 104 199-304 54-187 (520)
38 KOG0137|consensus 99.6 6.6E-15 1.4E-19 137.0 8.3 110 195-304 109-248 (634)
39 PLN02312 acyl-CoA oxidase 99.5 7.8E-14 1.7E-18 137.7 10.9 61 245-305 180-248 (680)
40 TIGR03203 pimD_small pimeloyl- 99.4 1.6E-13 3.5E-18 127.8 7.7 85 111-195 203-287 (378)
41 cd00567 ACAD Acyl-CoA dehydrog 99.4 1.5E-12 3.2E-17 118.9 12.7 95 104-198 150-244 (327)
42 PRK09463 fadE acyl-CoA dehydro 99.4 2.4E-13 5.2E-18 135.2 6.9 93 103-196 286-382 (777)
43 PRK13026 acyl-CoA dehydrogenas 99.4 4.9E-13 1.1E-17 132.6 9.1 92 103-195 285-380 (774)
44 PLN02636 acyl-coenzyme A oxida 99.4 5.3E-13 1.1E-17 132.2 7.7 92 103-194 273-386 (686)
45 COG1960 CaiA Acyl-CoA dehydrog 99.4 1.4E-12 3.1E-17 122.1 8.9 94 104-197 207-301 (393)
46 cd01157 MCAD Medium chain acyl 99.4 1.8E-12 3.9E-17 120.9 8.8 94 103-196 196-289 (378)
47 TIGR03207 cyc_hxne_CoA_dh cycl 99.4 1.5E-12 3.3E-17 121.1 8.3 95 103-197 193-287 (372)
48 cd01160 LCAD Long chain acyl-C 99.4 2E-12 4.3E-17 120.3 9.0 101 97-197 186-286 (372)
49 PLN02312 acyl-CoA oxidase 99.4 1.1E-12 2.4E-17 129.6 7.2 90 102-191 277-389 (680)
50 PTZ00461 isovaleryl-CoA dehydr 99.3 2.6E-12 5.6E-17 121.1 8.6 95 103-197 226-320 (410)
51 PRK12341 putative acyl-CoA deh 99.3 2.3E-12 5E-17 120.3 8.2 95 103-197 197-291 (381)
52 PRK03354 crotonobetainyl-CoA d 99.3 2.6E-12 5.5E-17 119.9 8.3 96 103-198 196-291 (380)
53 cd01162 IBD Isobutyryl-CoA deh 99.3 2.9E-12 6.2E-17 119.4 8.6 95 103-197 192-286 (375)
54 cd01155 ACAD_FadE2 Acyl-CoA de 99.3 2.9E-12 6.3E-17 120.1 8.4 96 103-198 209-306 (394)
55 cd01156 IVD Isovaleryl-CoA deh 99.3 3.3E-12 7.1E-17 119.0 8.7 95 103-197 195-289 (376)
56 cd01161 VLCAD Very long chain 99.3 3.4E-12 7.4E-17 120.3 8.6 95 103-197 223-317 (409)
57 PLN02519 isovaleryl-CoA dehydr 99.3 4.1E-12 8.8E-17 119.5 8.3 97 100-196 218-314 (404)
58 PRK11561 isovaleryl CoA dehydr 99.3 3.7E-12 7.9E-17 122.6 8.1 90 103-195 257-346 (538)
59 cd01151 GCD Glutaryl-CoA dehyd 99.3 7.6E-12 1.6E-16 117.0 9.3 96 103-199 202-297 (386)
60 PTZ00460 acyl-CoA dehydrogenas 99.3 5.4E-12 1.2E-16 124.2 8.4 91 103-193 221-328 (646)
61 cd01150 AXO Peroxisomal acyl-C 99.3 3.5E-12 7.5E-17 125.4 6.7 89 104-192 229-340 (610)
62 KOG0138|consensus 99.3 1.8E-12 3.9E-17 112.0 4.0 104 91-195 234-337 (432)
63 PLN02876 acyl-CoA dehydrogenas 99.3 1.3E-11 2.9E-16 125.7 9.7 95 103-197 633-729 (822)
64 cd01158 SCAD_SBCAD Short chain 99.2 2.8E-11 6.1E-16 112.5 8.6 95 103-197 192-286 (373)
65 cd01154 AidB Proteins involved 99.2 4.2E-11 9.2E-16 113.1 9.3 93 103-198 232-324 (418)
66 KOG1469|consensus 99.2 6.1E-11 1.3E-15 101.2 8.8 103 207-310 39-177 (392)
67 PF02771 Acyl-CoA_dh_N: Acyl-C 99.2 3.8E-11 8.3E-16 92.2 6.8 52 51-102 1-52 (113)
68 PLN02526 acyl-coenzyme A oxida 99.2 4.7E-11 1E-15 112.6 8.6 93 103-196 218-310 (412)
69 TIGR03204 pimC_large pimeloyl- 99.2 4.9E-11 1.1E-15 111.9 8.4 85 111-197 207-291 (395)
70 cd01153 ACAD_fadE5 Putative ac 99.1 1.6E-10 3.4E-15 108.9 9.8 93 103-198 207-307 (407)
71 PTZ00456 acyl-CoA dehydrogenas 99.1 2.6E-10 5.5E-15 112.1 9.3 87 104-193 277-375 (622)
72 PRK11561 isovaleryl CoA dehydr 99.0 1.1E-09 2.4E-14 105.5 10.0 53 251-304 179-232 (538)
73 cd01163 DszC Dibenzothiophene 99.0 5.7E-10 1.2E-14 104.0 7.3 94 103-197 177-275 (377)
74 PLN02443 acyl-coenzyme A oxida 99.0 1.1E-09 2.3E-14 108.3 7.9 84 103-186 225-325 (664)
75 cd00567 ACAD Acyl-CoA dehydrog 99.0 1.9E-09 4.1E-14 98.3 8.4 58 247-304 66-123 (327)
76 cd01150 AXO Peroxisomal acyl-C 99.0 1.5E-09 3.3E-14 106.8 7.9 58 246-303 130-195 (610)
77 cd01159 NcnH Naphthocyclinone 98.9 1.2E-09 2.6E-14 101.6 6.2 97 102-198 167-275 (370)
78 PTZ00460 acyl-CoA dehydrogenas 98.9 1.8E-09 3.9E-14 106.5 7.7 60 245-304 122-189 (646)
79 KOG1469|consensus 98.9 2.2E-09 4.8E-14 91.7 4.7 80 114-193 210-289 (392)
80 PLN02443 acyl-coenzyme A oxida 98.8 9.8E-09 2.1E-13 101.6 7.8 60 245-304 126-193 (664)
81 cd01152 ACAD_fadE6_17_26 Putat 98.8 2.2E-08 4.7E-13 93.5 8.2 86 111-200 203-288 (380)
82 PTZ00457 acyl-CoA dehydrogenas 98.5 2.1E-07 4.6E-12 89.4 6.9 72 115-199 219-290 (520)
83 KOG0135|consensus 98.5 1.8E-07 3.9E-12 87.4 5.2 88 103-190 250-360 (661)
84 PF00441 Acyl-CoA_dh_1: Acyl-C 98.4 1.1E-06 2.4E-11 70.6 7.1 65 134-198 1-65 (150)
85 TIGR02309 HpaB-1 4-hydroxyphen 98.2 4.3E-06 9.2E-11 80.0 7.7 85 113-203 251-340 (477)
86 KOG0135|consensus 97.1 0.00097 2.1E-08 63.1 5.5 76 227-302 106-216 (661)
87 TIGR02309 HpaB-1 4-hydroxyphen 96.1 0.0048 1E-07 59.3 3.3 32 272-304 171-202 (477)
88 KOG0136|consensus 95.5 0.024 5.2E-07 55.0 5.3 87 103-189 237-341 (670)
89 PF00441 Acyl-CoA_dh_1: Acyl-C 94.6 0.009 1.9E-07 47.6 -0.1 43 2-44 9-51 (150)
90 PF08028 Acyl-CoA_dh_2: Acyl-C 94.3 0.23 4.9E-06 38.9 7.3 49 149-197 1-51 (134)
91 KOG0136|consensus 87.0 0.54 1.2E-05 46.0 3.1 54 248-301 141-202 (670)
92 PF11794 HpaB_N: 4-hydroxyphen 82.6 3.5 7.5E-05 36.5 5.8 50 251-300 138-194 (264)
93 PF08028 Acyl-CoA_dh_2: Acyl-C 78.7 3.4 7.4E-05 32.1 4.2 27 9-35 1-27 (134)
94 PF01726 LexA_DNA_bind: LexA D 60.5 20 0.00043 24.3 4.2 49 49-97 3-57 (65)
95 COG2368 Aromatic ring hydroxyl 52.6 18 0.00038 34.7 3.8 29 272-300 175-203 (493)
96 TIGR02310 HpaB-2 4-hydroxyphen 47.7 84 0.0018 30.8 7.7 77 115-203 264-351 (519)
97 COG2368 Aromatic ring hydroxyl 35.4 2.3E+02 0.005 27.4 8.2 77 115-203 260-347 (493)
98 TIGR02310 HpaB-2 4-hydroxyphen 34.3 19 0.00041 35.1 1.0 29 272-300 178-206 (519)
99 PRK11074 putative DNA-binding 28.3 88 0.0019 27.7 4.3 61 5-67 15-75 (300)
100 PHA02095 hypothetical protein 27.0 46 0.001 22.9 1.6 21 276-300 26-46 (84)
101 TIGR02424 TF_pcaQ pca operon t 26.1 1.3E+02 0.0027 26.5 4.9 60 5-66 16-75 (300)
102 PF15631 Imm-NTF2-2: NTF2 fold 22.9 1.1E+02 0.0023 20.9 2.8 21 271-291 25-45 (66)
103 PRK03601 transcriptional regul 22.9 1.5E+02 0.0032 25.9 4.6 61 5-67 14-74 (275)
104 PRK10082 cell density-dependen 21.7 2.1E+02 0.0046 25.2 5.5 62 4-67 23-84 (303)
105 PRK10094 DNA-binding transcrip 21.3 1.7E+02 0.0036 26.1 4.7 62 4-67 14-75 (308)
106 PRK11242 DNA-binding transcrip 20.6 1.5E+02 0.0032 25.9 4.2 61 4-66 13-73 (296)
107 PF05428 CRF-BP: Corticotropin 20.5 38 0.00082 30.3 0.3 40 250-289 80-126 (311)
108 PRK11062 nhaR transcriptional 20.4 2E+02 0.0044 25.3 5.1 61 5-67 17-77 (296)
109 TIGR03418 chol_sulf_TF putativ 20.3 1.7E+02 0.0036 25.6 4.5 61 4-66 13-73 (291)
No 1
>KOG0140|consensus
Probab=99.97 E-value=1.7e-30 Score=222.60 Aligned_cols=146 Identities=57% Similarity=0.955 Sum_probs=136.5
Q ss_pred CCCCCHHHHHHHHHHHHhhhhcccchhhhhhhcCCCCHHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcceecCC
Q psy10338 47 YSELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPK 126 (312)
Q Consensus 47 ~~~l~~~~~~l~~~~~~f~~~~~~p~~~~~d~~~~~p~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~Vp~ 126 (312)
+|.|+++|++|++.+++|.++++.|.+.+||..++||++++++..++|+....+|+
T Consensus 25 sf~L~e~qke~q~~A~kFa~~e~~P~aae~Dk~ge~P~~iirkA~~lG~~~~~ip~------------------------ 80 (408)
T KOG0140|consen 25 SFGLTEDQKEFQEAARKFAKDEMIPNAAEYDKSGEFPWEIIRKAHELGFMNTYIPE------------------------ 80 (408)
T ss_pred ccCcchHHHHHHHHHHHHHHHhhccchhhhcccCCCcHHHHHHHHHcccCcccCcc------------------------
Confidence 48899999999999999999999999999999999999999999999999999998
Q ss_pred CCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHHHHhc
Q psy10338 127 ENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLLG 206 (312)
Q Consensus 127 ~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~~~~~ 206 (312)
T Consensus 81 -------------------------------------------------------------------------------- 80 (408)
T KOG0140|consen 81 -------------------------------------------------------------------------------- 80 (408)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccCCCChhHhHHHHHHHHHHccCcchHHHhhhcc---------------------------cceeeecCC
Q psy10338 207 VHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTALEASG---------------------------LGAYCVTEP 259 (312)
Q Consensus 207 ~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~g~~---------------------------~~~~a~tEp 259 (312)
.|||.|++..+.+++.|+|+.+|.++...+.++. ++++|+|||
T Consensus 81 ----------~~GG~Gls~l~t~lI~E~LayGCtg~~~~I~~~~l~~~pi~~~gneeqKkk~lg~l~~~p~~asYcvTEP 150 (408)
T KOG0140|consen 81 ----------DYGGLGLSRLDTCLIFEALAYGCTGIQTAISIHNLAAWPIILSGNEEQKKKYLGRLAEEPKVASYCVTEP 150 (408)
T ss_pred ----------ccCCCCchhHHHHHHHHHHHccchhHHHHHhccchhhhhehhcCcHHHHHhhhhhhhcchhhhhhhccCC
Confidence 6799999999999999999999999887665433 348999999
Q ss_pred CCCCCcCCceeEEEEeCCEEEEeeeeeeeeCCCcccEEEEEeccCCC
Q psy10338 260 GAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFRYE 306 (312)
Q Consensus 260 ~~gsd~~~~~t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~~~ 306 (312)
++|||+.+++|+|++.||.|+|||+|.||||+.+|+|++|.++++++
T Consensus 151 gAGSDvagikTka~KkGDeYiiNGsKawItg~G~anwyfVlaRtd~~ 197 (408)
T KOG0140|consen 151 GAGSDVAGIKTKAEKKGDEYIINGSKAWITGAGHANWYFVLARTDPD 197 (408)
T ss_pred CCCcchhhhhhhhhhcCCEEEEcCceeeeecCCccceEEEEEecCCC
Confidence 99999999999999999999999999999999999999999877765
No 2
>KOG0139|consensus
Probab=99.97 E-value=3.6e-30 Score=224.03 Aligned_cols=148 Identities=41% Similarity=0.635 Sum_probs=142.7
Q ss_pred CCCHHHHHHHHHHHHhhhhcccchhhhhhhcCCCCHHHHHHHHHcCCccccCCC--------------------------
Q psy10338 49 ELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPA-------------------------- 102 (312)
Q Consensus 49 ~l~~~~~~l~~~~~~f~~~~~~p~~~~~d~~~~~p~~~~~~l~~~G~~~~~~P~-------------------------- 102 (312)
.|+|++..+++.+++|.++++.|.++++|.+..+|..+++.+.++|++++.+|+
T Consensus 36 ~l~E~e~~l~~tvrkfa~~~i~Plv~~mD~~~~~~~~v~k~~fe~Glmgv~vpeeyGGsG~df~~~~~v~EEisk~d~sv 115 (398)
T KOG0139|consen 36 ILSETEQMLQKTVRKFAQEEIKPLVREMDRESRYPASVIKGLFELGLMGVEVPEEYGGSGLDFFAAAIVIEEISKVDASV 115 (398)
T ss_pred hcCcHHHHHHHHHHHHHHHhcchHHHhhhhhccCCHHHHHHHhhcCcceeecChhhCCCchhHHHHHHHHHHHhccCccc
Confidence 589999999999999999999999999999999999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q psy10338 103 -------------------------------------------------------------------------------- 102 (312)
Q Consensus 103 -------------------------------------------------------------------------------- 102 (312)
T Consensus 116 ~~~v~v~ntL~~~~i~~fGteeqK~~~~P~~~~d~vgsfAlSEpgaGSDa~A~~T~Ak~~Gd~~viNGsKmWItN~~~A~ 195 (398)
T KOG0139|consen 116 GVIVDVQNTLYLPLIIQFGTEEQKEKYLPKLTGDLVGSFALSEPGAGSDAFALKTTAKKDGDDYVINGSKMWITNAGEAD 195 (398)
T ss_pred eeEEEecccccchHHHHhCcHHHHhhhcchhhccccceeeecCCCCCcchHHhhhhHhhcCCeEEEecceeeecCCcccc
Confidence
Q ss_pred ---------------------------------CCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccCh
Q psy10338 103 ---------------------------------SEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRP 149 (312)
Q Consensus 103 ---------------------------------~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~ 149 (312)
+.+++|+|++.++.++|||||||.+++||+.|.|++|.+..||.+|+
T Consensus 196 ~~lVfan~d~~~~~Kgit~fiV~rd~~Gl~~~k~eDKLGmRaSsTcql~fedVrVpks~IlGe~G~GykyAm~~Ln~gRI 275 (398)
T KOG0139|consen 196 WFLVFANADPSKGYKGITCFIVPRDTPGLSLGKKEDKLGMRASSTCQLHFEDVRVPKSSILGEYGKGYKYAIEVLNAGRI 275 (398)
T ss_pred eEEEEEecChhhccCceeEEEeeCCCCCcccCCccccccccccceeeEEeccccccchhhcccCCcchHHHHHhcCccce
Confidence 68999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhH
Q psy10338 150 PVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIF 196 (312)
Q Consensus 150 ~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~ 196 (312)
.++++.+|+++.|+|.++.|+++|.+||++|.++|.+||+++..+..
T Consensus 276 gi~AqmlglaQ~c~d~tI~Y~q~R~~FGk~l~d~Q~iQhqiA~~~te 322 (398)
T KOG0139|consen 276 GIGAQMLGLAQGCFDETIPYAQERLQFGKRLLDFQGLQHQIADMATE 322 (398)
T ss_pred eehhhhhhhhHhHHHhhhHHHHHHHHhcchhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999997665543
No 3
>KOG0141|consensus
Probab=99.96 E-value=1.8e-29 Score=216.54 Aligned_cols=148 Identities=35% Similarity=0.533 Sum_probs=134.9
Q ss_pred CCCCCHHHHHHHHHHHHhhhhcccchhhhhhhcCCCC--HHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcceec
Q psy10338 47 YSELNETQQEFQALARKFCREEIIPVAAEHDRTGEYP--WGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRV 124 (312)
Q Consensus 47 ~~~l~~~~~~l~~~~~~f~~~~~~p~~~~~d~~~~~p--~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~V 124 (312)
-+.|++||+.||+.+++|+++++.|++.+||..++|+ +++|+++++.|++|++.|+
T Consensus 38 ~~g~~~e~~~~r~sv~kF~qeelaP~a~eidk~n~~~~~r~~WkklG~~gllGita~~---------------------- 95 (421)
T KOG0141|consen 38 MFGLSDEQDQLRESVRKFFQEELAPHASEIDKANEFKDLREFWKKLGKQGLLGITAPE---------------------- 95 (421)
T ss_pred hcCCCHHHHHHHHHHHHHHHHhhcchhhhhhhcCCcchHHHHHHHhhhcCcccccchh----------------------
Confidence 3569999999999999999999999999999999995 7999999999999999998
Q ss_pred CCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHHHH
Q psy10338 125 PKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLML 204 (312)
Q Consensus 125 p~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~~~ 204 (312)
T Consensus 96 -------------------------------------------------------------------------------- 95 (421)
T KOG0141|consen 96 -------------------------------------------------------------------------------- 95 (421)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcccccccccccccCCCChhHhHHHHHHHHHHccCcchHHH----------------------------hhhcccceeee
Q psy10338 205 LGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTA----------------------------LEASGLGAYCV 256 (312)
Q Consensus 205 ~~~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~----------------------------~~g~~~~~~a~ 256 (312)
+|||.|.+....+.++||++|+.++.+.. .+|+.++++|+
T Consensus 96 ------------~~GG~G~~y~~h~ivmEE~sra~g~v~lsygaHSnlcinqlvrnGseeQkekylPkl~sGe~iGalAM 163 (421)
T KOG0141|consen 96 ------------EYGGSGGGYLSHCIVMEEISRASGGVALSYGAHSNLCINQLVRNGSEEQKEKYLPKLISGEHIGALAM 163 (421)
T ss_pred ------------hhCCCchhHHHHHHHHHHHHhhcCCcccccccccchHHHHHHhcCCHHHHHhhhhhhhcccccceeee
Confidence 67999999999999999999887665532 22778899999
Q ss_pred cCCCCCCCcCCceeEEEEeCCEEEEeeeeeeeeCCCcccEEEEEeccCCCCC
Q psy10338 257 TEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFRYEKP 308 (312)
Q Consensus 257 tEp~~gsd~~~~~t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~~~~~ 308 (312)
|||++|||+.+++++|++++++|+|||+|.||||++.||+++|-++|+++.+
T Consensus 164 sEp~AGSDvv~mK~~Aek~g~~yiLNGsK~witNG~~advliVyAkTd~~a~ 215 (421)
T KOG0141|consen 164 SEPGAGSDVVSMKLKAEKKGDDYILNGSKFWITNGPDADVLIVYAKTDHSAV 215 (421)
T ss_pred cCCCCCCccceeeeeceecCCcEEecCcEEEEecCCCCcEEEEEEecCCCCC
Confidence 9999999999999999999999999999999999999999999999888744
No 4
>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated
Probab=99.92 E-value=1.4e-24 Score=202.32 Aligned_cols=144 Identities=28% Similarity=0.316 Sum_probs=127.6
Q ss_pred cCCCCCHHHHHHHHHHHHhhhhcc-cchhhhhhhcCCCCHHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcceec
Q psy10338 46 FYSELNETQQEFQALARKFCREEI-IPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRV 124 (312)
Q Consensus 46 m~~~l~~~~~~l~~~~~~f~~~~~-~p~~~~~d~~~~~p~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~V 124 (312)
|+|.+|++|++|++.+++|+.+++ .+...++|..+.||.++|++|.+.||+++.+|+
T Consensus 1 m~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~---------------------- 58 (380)
T PRK03354 1 MDFNLNDEQELFVAGIRELMASENWEAYFAECDRDSVYPERFVKALADMGIDSLLIPE---------------------- 58 (380)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhccCChhHHHHHhhCCCCHHHHHHHHHCCCCccCCCh----------------------
Confidence 688999999999999999999886 566677888888999999999999999999998
Q ss_pred CCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHHHH
Q psy10338 125 PKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLML 204 (312)
Q Consensus 125 p~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~~~ 204 (312)
T Consensus 59 -------------------------------------------------------------------------------- 58 (380)
T PRK03354 59 -------------------------------------------------------------------------------- 58 (380)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcccccccccccccCCCChhHhHHHHHHHHHHccCcchHHHhh--------------------------hcccceeeecC
Q psy10338 205 LGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTALE--------------------------ASGLGAYCVTE 258 (312)
Q Consensus 205 ~~~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~--------------------------g~~~~~~a~tE 258 (312)
+|||.|++..++..++++++++|++++++.. |+.+.++++||
T Consensus 59 ------------~~GG~g~~~~~~~~~~~~la~~~~s~~~~~~~~~~~~~l~~~g~~e~~~~~l~~~~~g~~~~~~a~tE 126 (380)
T PRK03354 59 ------------EHGGLDAGFVTLAAVWMELGRLGAPTYVLYQLPGGFNTFLREGTQEQIDKIMAFRGTGKQMWNSAITE 126 (380)
T ss_pred ------------hhCCCCCCHHHHHHHHHHHHhcCcchHHHHHhcccHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecC
Confidence 6799999999999999999998887654322 33356899999
Q ss_pred CCCCCCcCCceeEEEEeCCEEEEeeeeeeeeCCCcccEEEEEecc
Q psy10338 259 PGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDF 303 (312)
Q Consensus 259 p~~gsd~~~~~t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~ 303 (312)
|+.|||+..+.|+|++++|||+|||+|.|||++.+|||++|.+++
T Consensus 127 ~~~gs~~~~~~t~a~~~~~g~~lnG~K~fis~~~~ad~~~v~a~~ 171 (380)
T PRK03354 127 PGAGSDVGSLKTTYTRRNGKVYLNGSKCFITSSAYTPYIVVMARD 171 (380)
T ss_pred CCCCCchhhCEEEEEEeCCEEEEeeEEEEEcCCCcCCEEEEEEEc
Confidence 999999999999999999999999999999999999999998654
No 5
>cd01151 GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.
Probab=99.92 E-value=2.7e-24 Score=200.92 Aligned_cols=144 Identities=31% Similarity=0.438 Sum_probs=126.9
Q ss_pred cCCCCCHHHHHHHHHHHHhhhhcccchhhhhhhcCCCCHHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcceecC
Q psy10338 46 FYSELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVP 125 (312)
Q Consensus 46 m~~~l~~~~~~l~~~~~~f~~~~~~p~~~~~d~~~~~p~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~Vp 125 (312)
|+|.++++|+++++.+++|+++++.|...+.+..+.+|+++|+++.+.||+++ +|+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~-vP~----------------------- 64 (386)
T cd01151 9 LDDLLTEEERAIRDTAREFCQEELAPRVLEAYREEKFDRKIIEEMGELGLLGA-TIK----------------------- 64 (386)
T ss_pred cccCCCHHHHHHHHHHHHHHHHhcCccHHHHHHhCCCCHHHHHHHHHCCCCcc-Ccc-----------------------
Confidence 78899999999999999999999999988888888899999999999999999 998
Q ss_pred CCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHHHHh
Q psy10338 126 KENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLL 205 (312)
Q Consensus 126 ~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~~~~ 205 (312)
T Consensus 65 -------------------------------------------------------------------------------- 64 (386)
T cd01151 65 -------------------------------------------------------------------------------- 64 (386)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccccCCCChhHhHHHHHHHHHHccCcchHHHhh----------------------------hcccceeeec
Q psy10338 206 GVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTALE----------------------------ASGLGAYCVT 257 (312)
Q Consensus 206 ~~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~----------------------------g~~~~~~a~t 257 (312)
+|||.|+++.+...++|+++++|.++++... |+.++++++|
T Consensus 65 -----------~~GG~g~~~~~~~~v~e~l~~~~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~t 133 (386)
T cd01151 65 -----------GYGCAGLSSVAYGLIAREVERVDSGYRSFMSVQSSLVMLPIYDFGSEEQKQKYLPKLASGELIGCFGLT 133 (386)
T ss_pred -----------ccCCCCCCHHHHHHHHHHHHhhChhHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEec
Confidence 6688888888888888888888776543211 3445689999
Q ss_pred CCCCCCCcCCceeEEEEeCCEEEEeeeeeeeeCCCcccEEEEEeccC
Q psy10338 258 EPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFR 304 (312)
Q Consensus 258 Ep~~gsd~~~~~t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~ 304 (312)
||++|||+.++.|+|++++|||+|||+|.|||++..|||++|+++++
T Consensus 134 Ep~~Gsd~~~~~t~A~~~~~g~~lnG~K~~is~~~~Ad~~lv~ar~~ 180 (386)
T cd01151 134 EPNHGSDPGGMETRARKDGGGYKLNGSKTWITNSPIADVFVVWARND 180 (386)
T ss_pred CCCCCCChhhCeEEEEEECCEEEEEEEEEeecCCCcCCEEEEEEEEC
Confidence 99999999999999999999999999999999999999999986544
No 6
>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit. Members of this protein family are the PimD proteins of species such as Rhodopseudomonas palustris, Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=99.92 E-value=5.6e-24 Score=197.98 Aligned_cols=144 Identities=21% Similarity=0.260 Sum_probs=119.9
Q ss_pred CCCCCHHHHHHHHHHHHhhhhcccchhhh--hhhcCCCCHHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcceec
Q psy10338 47 YSELNETQQEFQALARKFCREEIIPVAAE--HDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRV 124 (312)
Q Consensus 47 ~~~l~~~~~~l~~~~~~f~~~~~~p~~~~--~d~~~~~p~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~V 124 (312)
+|.++++|+++++.+++|+++++.|...+ +|..+.||+++|+++.++||+++.+|+
T Consensus 1 ~~~~~~eq~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~e~G~~~l~vPe---------------------- 58 (378)
T TIGR03203 1 DFDLSEEQRLLKESVEGLLKTSYDFDSRKKYQKEKGGWSKAVWGKLAEQGLLGLPFSE---------------------- 58 (378)
T ss_pred CCCCCHHHHHHHHHHHHHHHhhCCHHHHHHHHhccCCCCHHHHHHHHHCCCcccccch----------------------
Confidence 36789999999999999999998875532 466778999999999999999999998
Q ss_pred CCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHHHH
Q psy10338 125 PKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLML 204 (312)
Q Consensus 125 p~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~~~ 204 (312)
T Consensus 59 -------------------------------------------------------------------------------- 58 (378)
T TIGR03203 59 -------------------------------------------------------------------------------- 58 (378)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcccccccccccccCCCChhHhHHHHHHHHHHccCcchHH--------------------------HhhhcccceeeecC
Q psy10338 205 LGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMT--------------------------ALEASGLGAYCVTE 258 (312)
Q Consensus 205 ~~~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~--------------------------~~~g~~~~~~a~tE 258 (312)
+|||.|++..+.+.++|++++.+.+.+. +..|+.+.++++||
T Consensus 59 ------------~~GG~G~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~L~~l~~G~~~~a~a~tE 126 (378)
T TIGR03203 59 ------------ADGGFGAGSVETMIVMEALGKALVLEPYLATVVIGGGFLRHAGSAAQKAAHLPGIIDGSKTFAFAQLE 126 (378)
T ss_pred ------------hcCCCCCCHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCChhheeeecC
Confidence 5577777777777777777775533221 11255567999999
Q ss_pred CCCCCCcCCceeEEEEeCCEEEEeeeeeeeeCCCcccEEEEEeccC
Q psy10338 259 PGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFR 304 (312)
Q Consensus 259 p~~gsd~~~~~t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~ 304 (312)
|++|||+.+++|+|++++|+|+|||+|.|||++..||+++|.++++
T Consensus 127 p~~gsd~~~~~t~a~~~g~~~~l~G~K~~vt~a~~Ad~~lv~ar~~ 172 (378)
T TIGR03203 127 KNSRYDLGDVSTTAKKTGDGWVIDGEKFVVLNGETADTLIVTARTK 172 (378)
T ss_pred CCCCCCcccceEEEEEcCCEEEEEeEEEEecCCccCCEEEEEEecC
Confidence 9999999999999999999999999999999999999999987654
No 7
>PRK12341 putative acyl-CoA dehydrogenase; Provisional
Probab=99.91 E-value=2.2e-23 Score=194.42 Aligned_cols=145 Identities=25% Similarity=0.256 Sum_probs=121.5
Q ss_pred cCCCCCHHHHHHHHHHHHhhhhccc-chhhhhhhcCCCCHHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcceec
Q psy10338 46 FYSELNETQQEFQALARKFCREEII-PVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRV 124 (312)
Q Consensus 46 m~~~l~~~~~~l~~~~~~f~~~~~~-p~~~~~d~~~~~p~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~V 124 (312)
|+|.++++++.+++.++.|+.+++. +...++|+.+.+|+++|++|.+.||+++.+|+
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~---------------------- 58 (381)
T PRK12341 1 MDFSLTEEQELLLASIRELITRNFPEEYFRTCDENGTYPREFMRALADNGISMLGVPE---------------------- 58 (381)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCchhHHHHHHhCCCCHHHHHHHHHCCCCCcCCCh----------------------
Confidence 7889999999999999999999886 46777888889999999999999999999998
Q ss_pred CCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHHHH
Q psy10338 125 PKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLML 204 (312)
Q Consensus 125 p~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~~~ 204 (312)
T Consensus 59 -------------------------------------------------------------------------------- 58 (381)
T PRK12341 59 -------------------------------------------------------------------------------- 58 (381)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcccccccccccccCCCChhHhHHHHHHHHHHccCcchHH-------------------------H-hhhcccceeeecC
Q psy10338 205 LGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMT-------------------------A-LEASGLGAYCVTE 258 (312)
Q Consensus 205 ~~~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~-------------------------~-~~g~~~~~~a~tE 258 (312)
+|||.|+++.+++.++|++++.|.+... + ..|+.+.++++||
T Consensus 59 ------------~~GG~g~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~~g~~~~~~a~tE 126 (381)
T PRK12341 59 ------------EFGGTPADYVTQMLVLEEVSKCGAPAFLITNGQCIHSMRRFGSAEQLRKTAESTLETGDPAYALALTE 126 (381)
T ss_pred ------------hhCCCCcCHHHHHHHHHHHhhcChhHHHHhhhhhHHHHHHhCCHHHHHHHhHHHhhCCCeEEEEEecC
Confidence 4566666666666666666666654211 1 1244457899999
Q ss_pred CCCCCCcCCceeEEEEeCCEEEEeeeeeeeeCCCcccEEEEEeccC
Q psy10338 259 PGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFR 304 (312)
Q Consensus 259 p~~gsd~~~~~t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~ 304 (312)
|+.|||+..++|+|++++|||+|||+|.||||+.+||+++|.+.++
T Consensus 127 p~~gsd~~~~~t~a~~~~gg~~lnG~K~~is~~~~Ad~~~v~a~~~ 172 (381)
T PRK12341 127 PGAGSDNNSATTTYTRKNGKVYLNGQKTFITGAKEYPYMLVLARDP 172 (381)
T ss_pred CCCCCchhhCeeEEEEeCCEEEEEeEEEEEcCCccCCEEEEEEEcC
Confidence 9999999999999999999999999999999999999999986543
No 8
>cd01157 MCAD Medium chain acyl-CoA dehydrogenase. MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer.
Probab=99.91 E-value=1.8e-23 Score=194.76 Aligned_cols=142 Identities=66% Similarity=1.089 Sum_probs=123.6
Q ss_pred CCHHHHHHHHHHHHhhhhcccchhhhhhhcCCCCHHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcceecCCCCc
Q psy10338 50 LNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKENV 129 (312)
Q Consensus 50 l~~~~~~l~~~~~~f~~~~~~p~~~~~d~~~~~p~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~Vp~~~l 129 (312)
++++|+.+++.+++|+++++.|...++|+.+.+|+++|++|.+.||+++.+|+
T Consensus 1 ~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~G~~~~~vP~--------------------------- 53 (378)
T cd01157 1 LTEQQKEFQETARKFAREEIIPVAAEYDKSGEYPWPLIKRAWELGLMNTHIPE--------------------------- 53 (378)
T ss_pred CCHHHHHHHHHHHHHHHHhcccchHHHHhhCCCCHHHHHHHHhCCCCCcCCCh---------------------------
Confidence 57899999999999999999998888998889999999999999999999998
Q ss_pred cccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHHHHhcccc
Q psy10338 130 LLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLLGVHN 209 (312)
Q Consensus 130 lG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~~~~~~g~ 209 (312)
T Consensus 54 -------------------------------------------------------------------------------- 53 (378)
T cd01157 54 -------------------------------------------------------------------------------- 53 (378)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccCCCChhHhHHHHHHHHHHccCcchHHHh---------------------------hhcccceeeecCCCCC
Q psy10338 210 CNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTAL---------------------------EASGLGAYCVTEPGAG 262 (312)
Q Consensus 210 ~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~---------------------------~g~~~~~~a~tEp~~g 262 (312)
+|||.|++..+...++|++++.|.++++.+ .|+.+.++++|||+.|
T Consensus 54 -------~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~g 126 (378)
T cd01157 54 -------DCGGLGLGTFDTCLITEELAYGCTGVQTAIEANSLGQMPVIISGNDEQKKKYLGRMTEEPLMCAYCVTEPGAG 126 (378)
T ss_pred -------hhCCCCCCHHHHHHHHHHHHhhhhHHHHHHHhhhhhHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCC
Confidence 568888888888888888887777654321 1444568999999999
Q ss_pred CCcCCceeEEEEeCCEEEEeeeeeeeeCCCcccEEEEEeccCC
Q psy10338 263 SDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFRY 305 (312)
Q Consensus 263 sd~~~~~t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~~ 305 (312)
||...+.|+|++++|||+|||+|.|||++.+|||++|++++++
T Consensus 127 s~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~ad~~lv~a~~~~ 169 (378)
T cd01157 127 SDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDP 169 (378)
T ss_pred CchhcCeEEEEEcCCEEEEeeEEEeecCCccCCEEEEEEEeCC
Confidence 9999999999999999999999999999999999999866543
No 9
>PLN02519 isovaleryl-CoA dehydrogenase
Probab=99.91 E-value=3.1e-23 Score=194.76 Aligned_cols=146 Identities=30% Similarity=0.442 Sum_probs=129.2
Q ss_pred ccCCCCCHHHHHHHHHHHHhhhhcccchhhhhhhcCCCCHH--HHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcce
Q psy10338 45 VFYSELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWG--IVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDV 122 (312)
Q Consensus 45 ~m~~~l~~~~~~l~~~~~~f~~~~~~p~~~~~d~~~~~p~~--~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv 122 (312)
.-||.++++|.++++.+++|+++++.|...++|..+.+|.+ +|++|.+.||+++.+|+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~~~p~~~~~~~~l~~~G~~~~~vP~-------------------- 80 (404)
T PLN02519 21 SSSLLFDDTQLQFKESVQQFAQENIAPHAAAIDATNSFPKDVNLWKLMGDFNLHGITAPE-------------------- 80 (404)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcchHHHHhcCCCCchHHHHHHHHHCCCCcccCCh--------------------
Confidence 35889999999999999999999999998889988888876 79999999999999998
Q ss_pred ecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHH
Q psy10338 123 RVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQL 202 (312)
Q Consensus 123 ~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~ 202 (312)
T Consensus 81 -------------------------------------------------------------------------------- 80 (404)
T PLN02519 81 -------------------------------------------------------------------------------- 80 (404)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcccccccccccccCCCChhHhHHHHHHHHHHccCcchHHHhh----------------------------hccccee
Q psy10338 203 MLLGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTALE----------------------------ASGLGAY 254 (312)
Q Consensus 203 ~~~~~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~----------------------------g~~~~~~ 254 (312)
+|||.|+++.+.+.++|++++.|.++++.+. |+.+.++
T Consensus 81 --------------e~GG~g~~~~~~~~v~e~la~~~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~ 146 (404)
T PLN02519 81 --------------EYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRNGTPAQKEKYLPKLISGEHVGAL 146 (404)
T ss_pred --------------hhCCCCCCHHHHHHHHHHHhhhcccHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEE
Confidence 6789999998999999999998888765321 3344589
Q ss_pred eecCCCCCCCcCCceeEEEEeCCEEEEeeeeeeeeCCCcccEEEEEeccC
Q psy10338 255 CVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFR 304 (312)
Q Consensus 255 a~tEp~~gsd~~~~~t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~ 304 (312)
++|||++|||...++|+|++++|||+|||+|.|||++.+||+++|.+.++
T Consensus 147 a~sEp~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs~a~~ad~~~v~a~~~ 196 (404)
T PLN02519 147 AMSEPNSGSDVVSMKCKAERVDGGYVLNGNKMWCTNGPVAQTLVVYAKTD 196 (404)
T ss_pred EecCCCcCCCcccceEEEEEeCCEEEEEeEEEeecCCCcCCEEEEEEEeC
Confidence 99999999999999999999999999999999999999999999986554
No 10
>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit. Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=99.90 E-value=2.5e-23 Score=194.78 Aligned_cols=144 Identities=26% Similarity=0.348 Sum_probs=120.2
Q ss_pred CCCCCHHHHHHHHHHHHhhhhcccchhhhh-hhcCCCCH----HHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcc
Q psy10338 47 YSELNETQQEFQALARKFCREEIIPVAAEH-DRTGEYPW----GIVKKAHELGLINGHIPASEQNMGQRASDTRGITFED 121 (312)
Q Consensus 47 ~~~l~~~~~~l~~~~~~f~~~~~~p~~~~~-d~~~~~p~----~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~d 121 (312)
||.++++|++|++.+++|+.+++.|...+. .+...+|. ++|+++.++||+++.+|+
T Consensus 1 ~~~lteeq~~l~~~~r~f~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~e~G~~gl~vPe------------------- 61 (395)
T TIGR03204 1 DLAFSKEEQAFRDEVRSFFKDNVPADTRQKLVEGRHLTKDEMVTWWRILNKKGWGVSHWPK------------------- 61 (395)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCChhhhhhhhccCCCChHHHHHHHHHHHhCCCCCCCCCc-------------------
Confidence 578999999999999999999998876543 33345664 899999999999999998
Q ss_pred eecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHH
Q psy10338 122 VRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQ 201 (312)
Q Consensus 122 v~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~ 201 (312)
T Consensus 62 -------------------------------------------------------------------------------- 61 (395)
T TIGR03204 62 -------------------------------------------------------------------------------- 61 (395)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhcccccccccccccCCCChhHhHHHHHHHHHHccCcchHHHh--------------------------hhcccceee
Q psy10338 202 LMLLGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTAL--------------------------EASGLGAYC 255 (312)
Q Consensus 202 ~~~~~~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~--------------------------~g~~~~~~a 255 (312)
+|||.|++..+++.++|++++++.+.++.. .|+.+.+++
T Consensus 62 ---------------~~GG~G~~~~~~~~v~eelg~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~L~~i~~G~~~~~~a 126 (395)
T TIGR03204 62 ---------------QYGGTGWTSVQHYIFNEELQSAPAPQPLAFGVSMVGPVIYTFGNEEQKKRFLPRIANVDDWWCQG 126 (395)
T ss_pred ---------------ccCCCCCCHHHHHHHHHHHHhcCCCccchhHhHhhHHHHHHhCCHHHHHHHHHHHhCCchheEeE
Confidence 668888888888888888888776654311 144456899
Q ss_pred ecCCCCCCCcCCceeEEEEeCCEEEEeeeeeeeeCCCcccEEEEEeccC
Q psy10338 256 VTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFR 304 (312)
Q Consensus 256 ~tEp~~gsd~~~~~t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~ 304 (312)
+|||++|||+..++|+|++++|+|+|||+|.|||++..||+++|.+.++
T Consensus 127 ~tEp~~gsd~~~~~t~a~~~g~~~~LnG~K~~vt~a~~Ad~~lv~a~~~ 175 (395)
T TIGR03204 127 FSEPGSGSDLASLKTKAEKKGDKWIINGQKTWTTLAQHADWIFCLCRTD 175 (395)
T ss_pred ecCCCCCCChhhceEEEEEcCCEEEEeeEEEeecCCccCCeEEEEEEeC
Confidence 9999999999999999999999999999999999999999999986654
No 11
>PLN02526 acyl-coenzyme A oxidase
Probab=99.90 E-value=3.9e-23 Score=194.49 Aligned_cols=154 Identities=27% Similarity=0.391 Sum_probs=129.0
Q ss_pred cCcccccccccCCCCCHHHHHHHHHHHHhhhhcccchhhhhhhcCCCCHHHHHHHHHcCCccccCCCCCCccCCcCCCcc
Q psy10338 36 FGVPIAAHQVFYSELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTR 115 (312)
Q Consensus 36 ~~~p~~~~~~m~~~l~~~~~~l~~~~~~f~~~~~~p~~~~~d~~~~~p~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~ 115 (312)
|+..++....||..++++|++|++.+++|+++++.|...+.+....+|+++|++|.++||+++.+ +
T Consensus 15 ~~~~~~~~~~~~~~~t~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~p~~~~~~l~~~G~~~~~v-~------------- 80 (412)
T PLN02526 15 FPPSVSDYYQFDDLLTPEEQALRKRVRECMEKEVAPIMTEYWEKAEFPFHIIPKLGSLGIAGGTI-K------------- 80 (412)
T ss_pred CChhhccccccccCCCHHHHHHHHHHHHHHHHhcccchHHHHHhCCCCHHHHHHHHHCCCCcCcc-c-------------
Confidence 33334444457778999999999999999999999987776777789999999999999999887 5
Q ss_pred cEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhh
Q psy10338 116 GITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSI 195 (312)
Q Consensus 116 ~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~ 195 (312)
T Consensus 81 -------------------------------------------------------------------------------- 80 (412)
T PLN02526 81 -------------------------------------------------------------------------------- 80 (412)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhcccccccccccccCCCChhHhHHHHHHHHHHccCcchHHHh----------------------------h
Q psy10338 196 FEREIQLMLLGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTAL----------------------------E 247 (312)
Q Consensus 196 ~~~~~~~~~~~~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~----------------------------~ 247 (312)
+|||.|+++.+++.++|++++.|.+.+.++ .
T Consensus 81 ---------------------~~GG~G~~~~~~~~~~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~ 139 (412)
T PLN02526 81 ---------------------GYGCPGLSITASAIATAEVARVDASCSTFILVHSSLAMLTIALCGSEAQKQKYLPSLAQ 139 (412)
T ss_pred ---------------------ccCCCCcCHHHHHHHHHHHHhhCchHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhC
Confidence 568888888888888888888887654221 1
Q ss_pred hcccceeeecCCCCCCCcCCceeEEEEeCCEEEEeeeeeeeeCCCcccEEEEEeccC
Q psy10338 248 ASGLGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFR 304 (312)
Q Consensus 248 g~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~ 304 (312)
|+.++++++|||+.|||+.++.|+|++++|||+|||+|.|||++..|||++|.+.++
T Consensus 140 G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~gg~~lnG~K~~vs~~~~Ad~~lv~a~~~ 196 (412)
T PLN02526 140 LDTVACWALTEPDYGSDASSLNTTATKVEGGWILNGQKRWIGNSTFADVLVIFARNT 196 (412)
T ss_pred CCeEEEEEecCCCCCCChhhCeeEEEEECCEEEEEEEEeeecCCCccCEEEEEEEeC
Confidence 344568899999999999999999999999999999999999999999999986543
No 12
>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase. Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase.
Probab=99.90 E-value=4.1e-23 Score=191.99 Aligned_cols=141 Identities=28% Similarity=0.425 Sum_probs=123.9
Q ss_pred CCHHHHHHHHHHHHhhhhcccchhhhhhhcCCCCHHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcceecCCCCc
Q psy10338 50 LNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKENV 129 (312)
Q Consensus 50 l~~~~~~l~~~~~~f~~~~~~p~~~~~d~~~~~p~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~Vp~~~l 129 (312)
|+++|+.+++.+++|+++++.|...+.|+.+.+|+++|+++.+.||+++.+|+
T Consensus 1 ~t~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~G~~~l~vP~--------------------------- 53 (372)
T TIGR03207 1 LNEDLQALADTARRFARERIAPGFKERDKTRVLDRELMRDMGEMGFIGPELPE--------------------------- 53 (372)
T ss_pred CCHHHHHHHHHHHHHHHHhcCcchHHHHhhCCCCHHHHHHHHHCCCCcccCCh---------------------------
Confidence 57899999999999999999999888888889999999999999999999998
Q ss_pred cccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHHHHhcccc
Q psy10338 130 LLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLLGVHN 209 (312)
Q Consensus 130 lG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~~~~~~g~ 209 (312)
T Consensus 54 -------------------------------------------------------------------------------- 53 (372)
T TIGR03207 54 -------------------------------------------------------------------------------- 53 (372)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccCCCChhHhHHHHHHHHHHccCcchHHHh---------------------------hhcccceeeecCCCCC
Q psy10338 210 CNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTAL---------------------------EASGLGAYCVTEPGAG 262 (312)
Q Consensus 210 ~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~---------------------------~g~~~~~~a~tEp~~g 262 (312)
+|||.|+++.+...+.|++++.|.+++++. .|+.+.++++|||++|
T Consensus 54 -------~~GG~g~~~~~~~~~~e~la~~~~s~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~G~~~~~~a~tEp~~G 126 (372)
T TIGR03207 54 -------EHGGLGMGCLAAGVIHEQIARADLSMSYVNLLASLNGQILAQHARPEIAKPWLGQLIAGEALFAIALTEPRGG 126 (372)
T ss_pred -------hHCCCCCCHHHHHHHHHHHHhhCccHHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCC
Confidence 568888888888888888888777765331 1445669999999999
Q ss_pred CCcCCceeEEEEeCCEEEEeeeeeeeeCCCcccEEEEEeccC
Q psy10338 263 SDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFR 304 (312)
Q Consensus 263 sd~~~~~t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~ 304 (312)
||..++.|+|++++|||+|||+|.|||++.+|||++|++.++
T Consensus 127 sd~~~~~t~a~~~~~g~~lnG~k~~vs~~~~ad~~lv~a~~~ 168 (372)
T TIGR03207 127 SDAARLRLRAERDGDDYVLNGEKTSISAADQADAAVVFARTG 168 (372)
T ss_pred cChhhCEEEEEEeCCEEEEEEEEEEEcCCCcCCEEEEEEEcC
Confidence 999999999999999999999999999999999999996554
No 13
>cd01156 IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.
Probab=99.90 E-value=1.1e-22 Score=189.43 Aligned_cols=141 Identities=33% Similarity=0.553 Sum_probs=124.5
Q ss_pred CCHHHHHHHHHHHHhhhhcccchhhhhhhcCCCCHHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcceecCCCCc
Q psy10338 50 LNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKENV 129 (312)
Q Consensus 50 l~~~~~~l~~~~~~f~~~~~~p~~~~~d~~~~~p~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~Vp~~~l 129 (312)
++++++.|++.+++|+++++.|.+.++|+.+.+|+++|++|.+.||+++.+|+
T Consensus 2 ~~~~~~~l~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~l~~~Gl~~~~vP~--------------------------- 54 (376)
T cd01156 2 LDDEIEMLRQSVREFAQKEIAPLAAKIDRDNEFPRDLWRKMGKLGLLGITAPE--------------------------- 54 (376)
T ss_pred CCHHHHHHHHHHHHHHHHhcCcchHHHHhhCCCCHHHHHHHHhCCCCcccCCH---------------------------
Confidence 67899999999999999999998888888888999999999999999999998
Q ss_pred cccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHHHHhcccc
Q psy10338 130 LLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLLGVHN 209 (312)
Q Consensus 130 lG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~~~~~~g~ 209 (312)
T Consensus 55 -------------------------------------------------------------------------------- 54 (376)
T cd01156 55 -------------------------------------------------------------------------------- 54 (376)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccCCCChhHhHHHHHHHHHHccCcchHHHhh----------------------------hcccceeeecCCCC
Q psy10338 210 CNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTALE----------------------------ASGLGAYCVTEPGA 261 (312)
Q Consensus 210 ~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~----------------------------g~~~~~~a~tEp~~ 261 (312)
+|||.|+++.+...++|++++.|.++++.+. |+.+.++++|||++
T Consensus 55 -------e~GG~g~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~sEp~~ 127 (376)
T cd01156 55 -------EYGGSGMGYLAHVIIMEEISRASGSVALSYGAHSNLCINQIYRNGSAAQKEKYLPKLISGEHIGALAMSEPNA 127 (376)
T ss_pred -------hhCCCCCCHHHHHHHHHHHhccchhHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCC
Confidence 6688888888888888888888887665321 33455899999999
Q ss_pred CCCcCCceeEEEEeCCEEEEeeeeeeeeCCCcccEEEEEeccC
Q psy10338 262 GSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFR 304 (312)
Q Consensus 262 gsd~~~~~t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~ 304 (312)
|||..+++|+|++++|||+|||+|.|||++.+||+++|.+.++
T Consensus 128 gs~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~~ 170 (376)
T cd01156 128 GSDVVSMKLRAEKKGDRYVLNGSKMWITNGPDADTLVVYAKTD 170 (376)
T ss_pred CCChhhCeEEEEEeCCEEEEEEEEEEecCCCcCCEEEEEEEeC
Confidence 9999999999999999999999999999999999999986544
No 14
>cd01162 IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer.
Probab=99.89 E-value=1.7e-22 Score=188.10 Aligned_cols=140 Identities=36% Similarity=0.613 Sum_probs=123.4
Q ss_pred CCHHHHHHHHHHHHhhhhcccchhhhhhhcCCCCHHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcceecCCCCc
Q psy10338 50 LNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKENV 129 (312)
Q Consensus 50 l~~~~~~l~~~~~~f~~~~~~p~~~~~d~~~~~p~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~Vp~~~l 129 (312)
++|+|+++++.+++|+++++.|.+.++|..+.+|+++|+++.+.||+++.+|+
T Consensus 1 ~~~~~~~l~~~~~~~~~~~~~~~a~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~--------------------------- 53 (375)
T cd01162 1 LNEEQRAIQEVARAFAAKEMAPHAADWDQKKHFPVDVLRKAAELGFGGIYIRD--------------------------- 53 (375)
T ss_pred CCHHHHHHHHHHHHHHHHhCCcchhhHHhhCCCCHHHHHHHHHCCCCCcCCCH---------------------------
Confidence 57899999999999999999999888899899999999999999999999998
Q ss_pred cccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHHHHhcccc
Q psy10338 130 LLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLLGVHN 209 (312)
Q Consensus 130 lG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~~~~~~g~ 209 (312)
T Consensus 54 -------------------------------------------------------------------------------- 53 (375)
T cd01162 54 -------------------------------------------------------------------------------- 53 (375)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccCCCChhHhHHHHHHHHHHccCcchHHHhh---------------------------hcccceeeecCCCCC
Q psy10338 210 CNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTALE---------------------------ASGLGAYCVTEPGAG 262 (312)
Q Consensus 210 ~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~---------------------------g~~~~~~a~tEp~~g 262 (312)
+|||.|.++.+.+.++|+++++|+++++++. +..++++++|||++|
T Consensus 54 -------~~GG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tE~~~g 126 (375)
T cd01162 54 -------DVGGSGLSRLDASIIFEALSTGCVSTAAYISIHNMCAWMIDSFGNDEQRERFLPDLCTMEKLASYCLTEPGSG 126 (375)
T ss_pred -------hhCCCCCCHHHHHHHHHHHHhhchhHHHHHHHhhhHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCCC
Confidence 6688888888888888888888877653221 334568999999999
Q ss_pred CCcCCceeEEEEeCCEEEEeeeeeeeeCCCcccEEEEEecc
Q psy10338 263 SDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDF 303 (312)
Q Consensus 263 sd~~~~~t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~ 303 (312)
||...+.|+|++++|||+|||+|.|||++.+||+++|++.+
T Consensus 127 sd~~~~~t~a~~~~~g~~l~G~k~~vs~~~~ad~~~v~a~~ 167 (375)
T cd01162 127 SDAAALRTRAVREGDHYVLNGSKAFISGAGDSDVYVVMART 167 (375)
T ss_pred CChhhCEEEEEEeCCEEEEEEEEEEecCCCCCCEEEEEEEe
Confidence 99999999999999999999999999999999999998654
No 15
>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional
Probab=99.89 E-value=2.1e-22 Score=189.49 Aligned_cols=144 Identities=28% Similarity=0.456 Sum_probs=122.3
Q ss_pred cC-CCCCHHHHHHHHHHHHhhhhcccchhhhhhhcCCCCHHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcceec
Q psy10338 46 FY-SELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRV 124 (312)
Q Consensus 46 m~-~~l~~~~~~l~~~~~~f~~~~~~p~~~~~d~~~~~p~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~V 124 (312)
|+ |.++++++++++.+++|+++++.|...++|..+.+|+++|++|.+.||+++.+|+
T Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~l~~~Gl~~l~vP~---------------------- 89 (410)
T PTZ00461 32 MDLYNPTPEHAALRETVAKFSREVVDKHAREDDINMHFNRDLFKQLGDLGVMGVTVPE---------------------- 89 (410)
T ss_pred cccCCCCHHHHHHHHHHHHHHHHhCCccHHHHhhhCCCCHHHHHHHHHCCCCcccCCh----------------------
Confidence 54 6899999999999999999999999888888889999999999999999999998
Q ss_pred CCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHHHH
Q psy10338 125 PKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLML 204 (312)
Q Consensus 125 p~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~~~ 204 (312)
T Consensus 90 -------------------------------------------------------------------------------- 89 (410)
T PTZ00461 90 -------------------------------------------------------------------------------- 89 (410)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcccccccccccccCCCChhHhHHHHHHHHHHccCcchHH----------------------------Hhhhcccceeee
Q psy10338 205 LGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMT----------------------------ALEASGLGAYCV 256 (312)
Q Consensus 205 ~~~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~----------------------------~~~g~~~~~~a~ 256 (312)
+|||.|+++.+...++|++++.++++++ +..|+.++++++
T Consensus 90 ------------~~GG~g~~~~~~~~~~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~~G~~~~~~a~ 157 (410)
T PTZ00461 90 ------------ADGGAGMDAVAAVIIHHELSKYDPGFCLAYLAHSMLFVNNFYYSASPAQRARWLPKVLTGEHVGAMGM 157 (410)
T ss_pred ------------hhCCCCCCHHHHHHHHHHHHhhCchHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEe
Confidence 5577777777777777777776654332 112445668999
Q ss_pred cCCCCCCCcCCceeEEEEeC-CEEEEeeeeeeeeCCCcccEEEEEecc
Q psy10338 257 TEPGAGSDVNGVKTKAVKKG-DEWILNGQKMWITNGGVANWQNRTRDF 303 (312)
Q Consensus 257 tEp~~gsd~~~~~t~A~~~~-~g~~l~G~k~~vs~~~~ad~~~v~~~~ 303 (312)
|||++|||+.++.|+|++++ |+|+|||+|.||||+..|||++|.+.+
T Consensus 158 tEp~~Gsd~~~~~t~a~~~~~gg~~L~G~K~~vs~a~~Ad~~lv~a~~ 205 (410)
T PTZ00461 158 SEPGAGTDVLGMRTTAKKDSNGNYVLNGSKIWITNGTVADVFLIYAKV 205 (410)
T ss_pred cCCCCCCChHHCeEEEEEcCCCeEEEEeEEEeECCCccCCEEEEEEEe
Confidence 99999999999999999986 489999999999999999999998654
No 16
>cd01160 LCAD Long chain acyl-CoA dehydrogenase. LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer.
Probab=99.88 E-value=3.5e-22 Score=185.70 Aligned_cols=141 Identities=34% Similarity=0.533 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHHhhhhcccchhhhhhhcCCCCHHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcceecCCCCccc
Q psy10338 52 ETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKENVLL 131 (312)
Q Consensus 52 ~~~~~l~~~~~~f~~~~~~p~~~~~d~~~~~p~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~Vp~~~llG 131 (312)
++|++|++.+++|+++++.|.+.++|.++.+|+++|++|.++||+++.+|+
T Consensus 1 ~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G~~~~~vP~----------------------------- 51 (372)
T cd01160 1 EEHDAFRDVVRRFFAKEVAPFHHEWEKAGEVPREVWRKAGEQGLLGVGFPE----------------------------- 51 (372)
T ss_pred ChHHHHHHHHHHHHHHhCchhHHHHHhhCCCCHHHHHHHHhCCCCCCCCCH-----------------------------
Confidence 478899999999999999998888998889999999999999999999998
Q ss_pred cCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHHHHhcccccc
Q psy10338 132 GEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLLGVHNCN 211 (312)
Q Consensus 132 ~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~~~~~~g~~~ 211 (312)
T Consensus 52 -------------------------------------------------------------------------------- 51 (372)
T cd01160 52 -------------------------------------------------------------------------------- 51 (372)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCCCChhHhHHHHHHHHHHccCcchH---------------------------HHhhhcccceeeecCCCCCCC
Q psy10338 212 VFLVSVSGGLELSVFDGCLVAEELAYGCTGIM---------------------------TALEASGLGAYCVTEPGAGSD 264 (312)
Q Consensus 212 ~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~---------------------------~~~~g~~~~~~a~tEp~~gsd 264 (312)
+|||.|+++.+...++|++++.+.+.. .+..|+.++++++|||++|||
T Consensus 52 -----~~GG~g~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd 126 (372)
T cd01160 52 -----EYGGIGGDLLSAAVLWEELARAGGSGPGLSLHTDIVSPYITRAGSPEQKERVLPQMVAGKKIGAIAMTEPGAGSD 126 (372)
T ss_pred -----HHCCCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCc
Confidence 456666666666666666666433311 111244567999999999999
Q ss_pred cCCceeEEEEeCCEEEEeeeeeeeeCCCcccEEEEEeccCCC
Q psy10338 265 VNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFRYE 306 (312)
Q Consensus 265 ~~~~~t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~~~ 306 (312)
...++|+|++++|||+|||+|.||||+.+||+++|++.++++
T Consensus 127 ~~~~~t~a~~~~~g~~l~G~k~~vs~~~~Ad~~~v~a~~~~~ 168 (372)
T cd01160 127 LQGIRTTARKDGDHYVLNGSKTFITNGMLADVVIVVARTGGE 168 (372)
T ss_pred hhhCeEEEEEeCCEEEEeeEEEEecCCCccCEEEEEEEeCCC
Confidence 999999999999999999999999999999999998665443
No 17
>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase. VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer.
Probab=99.88 E-value=4.9e-22 Score=187.01 Aligned_cols=144 Identities=31% Similarity=0.472 Sum_probs=119.8
Q ss_pred cccCCCCCHHHHHHHHHHHHhhhhcccchhhhhhhcCCCCHHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEccee
Q psy10338 44 QVFYSELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVR 123 (312)
Q Consensus 44 ~~m~~~l~~~~~~l~~~~~~f~~~~~~p~~~~~d~~~~~p~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~ 123 (312)
..|+++++++|+++++.+++|+++++.|. +++..+.+|.++|++|.+.||+++.+|+
T Consensus 21 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~d~~~~~~~~~~~~l~~~Gl~~l~vP~--------------------- 77 (409)
T cd01161 21 SVLTEEQTEELNMLVGPVEKFFEEVNDPA--KNDQLEKIPRKTLTQLKELGLFGLQVPE--------------------- 77 (409)
T ss_pred cccCccCCHHHHHHHHHHHHHHHHhCCch--hhccccCCCHHHHHHHHhCCCCCCCCCh---------------------
Confidence 55899999999999999999999999886 4567778999999999999999999998
Q ss_pred cCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHHH
Q psy10338 124 VPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLM 203 (312)
Q Consensus 124 Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~~ 203 (312)
T Consensus 78 -------------------------------------------------------------------------------- 77 (409)
T cd01161 78 -------------------------------------------------------------------------------- 77 (409)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhcccccccccccccCCCChhHhHHHHHHHHHHccCcchHHHh----------------------------hhcccceee
Q psy10338 204 LLGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTAL----------------------------EASGLGAYC 255 (312)
Q Consensus 204 ~~~~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~----------------------------~g~~~~~~a 255 (312)
+|||.|++..++..++|++++ |.++++.+ .|+.+++++
T Consensus 78 -------------~~GG~g~~~~~~~~v~e~l~~-~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a 143 (409)
T cd01161 78 -------------EYGGLGLNNTQYARLAEIVGM-DLGFSVTLGAHQSIGFKGILLFGTEAQKEKYLPKLASGEWIAAFA 143 (409)
T ss_pred -------------hhCCCCCCHHHHHHHHHHHhh-ChHHHHHHHHhhhhhHHHHHHcCCHHHHHHHhHHHhCCCeeEEEE
Confidence 456666666666677777776 65543221 245566999
Q ss_pred ecCCCCCCCcCCceeEEEEe--CCEEEEeeeeeeeeCCCcccEEEEEeccC
Q psy10338 256 VTEPGAGSDVNGVKTKAVKK--GDEWILNGQKMWITNGGVANWQNRTRDFR 304 (312)
Q Consensus 256 ~tEp~~gsd~~~~~t~A~~~--~~g~~l~G~k~~vs~~~~ad~~~v~~~~~ 304 (312)
+|||++|||...++|+|+++ +++|+|||+|.||||+.+|||++|.++++
T Consensus 144 ~tEp~~Gs~~~~~~t~a~~~~~g~g~~l~G~K~~vs~~~~Ad~~lv~ar~~ 194 (409)
T cd01161 144 LTEPSSGSDAASIRTTAVLSEDGKHYVLNGSKIWITNGGIADIFTVFAKTE 194 (409)
T ss_pred ecCCCCCCChhhCeeEEEEcCCCCEEEEEeEEEeecCCCcCCEEEEEEEcC
Confidence 99999999999999999994 55899999999999999999999986543
No 18
>KOG0139|consensus
Probab=99.87 E-value=7.9e-23 Score=178.37 Aligned_cols=119 Identities=30% Similarity=0.474 Sum_probs=106.1
Q ss_pred HHHhhhHHHHHHHHHhcccccccccccccCCCChhHhHHHHHHHHHHccCcchHHHhh----------------------
Q psy10338 190 IQYVSIFEREIQLMLLGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTALE---------------------- 247 (312)
Q Consensus 190 l~~~a~~~~~~~~~~~~~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~---------------------- 247 (312)
++...-++..+.+.+.++|+.+..+|++|||.|.++.....++||+++.|++++.++.
T Consensus 63 mD~~~~~~~~v~k~~fe~Glmgv~vpeeyGGsG~df~~~~~v~EEisk~d~sv~~~v~v~ntL~~~~i~~fGteeqK~~~ 142 (398)
T KOG0139|consen 63 MDRESRYPASVIKGLFELGLMGVEVPEEYGGSGLDFFAAAIVIEEISKVDASVGVIVDVQNTLYLPLIIQFGTEEQKEKY 142 (398)
T ss_pred hhhhccCCHHHHHHHhhcCcceeecChhhCCCchhHHHHHHHHHHHhccCccceeEEEecccccchHHHHhCcHHHHhhh
Confidence 3444556667888899999999999999999999999999999999999999885433
Q ss_pred -----hcccceeeecCCCCCCCcCCceeEEEEeCCEEEEeeeeeeeeCCCcccEEEEEeccCCCCC
Q psy10338 248 -----ASGLGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFRYEKP 308 (312)
Q Consensus 248 -----g~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~~~~~ 308 (312)
+..+++||+|||++|||+.+++|+|+++||.|+|||+|.||||+.+|||++|++++|+++.
T Consensus 143 ~P~~~~d~vgsfAlSEpgaGSDa~A~~T~Ak~~Gd~~viNGsKmWItN~~~A~~~lVfan~d~~~~ 208 (398)
T KOG0139|consen 143 LPKLTGDLVGSFALSEPGAGSDAFALKTTAKKDGDDYVINGSKMWITNAGEADWFLVFANADPSKG 208 (398)
T ss_pred cchhhccccceeeecCCCCCcchHHhhhhHhhcCCeEEEecceeeecCCcccceEEEEEecChhhc
Confidence 5567899999999999999999999999999999999999999999999999988766543
No 19
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed
Probab=99.86 E-value=1.5e-21 Score=193.08 Aligned_cols=172 Identities=20% Similarity=0.250 Sum_probs=128.1
Q ss_pred cCCChhhhhhhhhhHHHHHHHHHHHHHHhhhcCcccccccccCCCCCHHHHHHHHH-HHHhhhhcccchhhhhhhcCCCC
Q psy10338 5 DKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQEFQAL-ARKFCREEIIPVAAEHDRTGEYP 83 (312)
Q Consensus 5 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~m~~~l~~~~~~l~~~-~~~f~~~~~~p~~~~~d~~~~~p 83 (312)
++||.+++||.++..+.-|..-.+..+.. +-| ...+|+|++++++. +++|+... ......++.+.+|
T Consensus 44 ~te~~a~~ag~~~~~~~lF~G~~~~~~l~---~~p-------~~~Ls~ee~~~~d~~v~~l~~~~--~~~~~~~~~~~~P 111 (777)
T PRK09463 44 QTEREALEAGTVWWEGELFSGKPDWKKLL---NYP-------KPTLTAEEQAFLDGPVEELCRMV--NDWQITHELADLP 111 (777)
T ss_pred HHHHHHHHcCCchhhhhhcCCCCChHHhc---CCC-------CCCCCHHHHHHHHHHHHHHHHHH--HHHHHhccccCCC
Confidence 67889999999998887776655444332 111 23578999999986 88877631 1222223346899
Q ss_pred HHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHH
Q psy10338 84 WGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCL 163 (312)
Q Consensus 84 ~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l 163 (312)
+++|++++++||+++.+|+
T Consensus 112 ~e~w~~L~e~G~~gl~IPe------------------------------------------------------------- 130 (777)
T PRK09463 112 PEVWQFIKEHGFFGMIIPK------------------------------------------------------------- 130 (777)
T ss_pred HHHHHHHHHCCCCcCCCch-------------------------------------------------------------
Confidence 9999999999999999998
Q ss_pred HHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHHHHhcccccccccccccCCCChhHhHHHHHHHHHHccCcchH
Q psy10338 164 DEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLLGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIM 243 (312)
Q Consensus 164 ~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~~~~~~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~ 243 (312)
+|||.|++..+...++|++++.+.+++
T Consensus 131 -----------------------------------------------------eyGG~Gls~~~~a~v~eeLg~~~~s~a 157 (777)
T PRK09463 131 -----------------------------------------------------EYGGLEFSAYAHSRVLQKLASRSGTLA 157 (777)
T ss_pred -----------------------------------------------------hhCCCCCCHHHHHHHHHHHHhhCcchh
Confidence 567777777777777777777665532
Q ss_pred H-----------------------------HhhhcccceeeecCCCCCCCcCCceeEE-----EEeCC---EEEEeeeee
Q psy10338 244 T-----------------------------ALEASGLGAYCVTEPGAGSDVNGVKTKA-----VKKGD---EWILNGQKM 286 (312)
Q Consensus 244 ~-----------------------------~~~g~~~~~~a~tEp~~gsd~~~~~t~A-----~~~~~---g~~l~G~k~ 286 (312)
. +..|+.+.|+++|||++|||+.+++|++ +++|+ ||+|||+|.
T Consensus 158 ~~~~v~~slg~~~lL~~~GteeQK~~yLp~La~Ge~i~afAlTEP~aGSDaa~i~Tta~~~~a~~dGd~~~g~vLNG~K~ 237 (777)
T PRK09463 158 VTVMVPNSLGPGELLLHYGTDEQKDHYLPRLARGEEIPCFALTSPEAGSDAGSIPDTGVVCKGEWQGEEVLGMRLTWNKR 237 (777)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCcCCCcccccccceeeeeeecCCcccceEEEEEEE
Confidence 1 1125556799999999999999888654 45565 699999999
Q ss_pred eeeCCCcccEEEEEec
Q psy10338 287 WITNGGVANWQNRTRD 302 (312)
Q Consensus 287 ~vs~~~~ad~~~v~~~ 302 (312)
|||+++.||+++|..+
T Consensus 238 ~IT~a~~Ad~l~V~ar 253 (777)
T PRK09463 238 YITLAPIATVLGLAFK 253 (777)
T ss_pred eeCCCCccCEEEEEEE
Confidence 9999999999988743
No 20
>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.
Probab=99.86 E-value=4.6e-21 Score=178.23 Aligned_cols=140 Identities=39% Similarity=0.628 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHhhhhcccchhhhhhhcCCCCHHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcceecCCCCccc
Q psy10338 52 ETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKENVLL 131 (312)
Q Consensus 52 ~~~~~l~~~~~~f~~~~~~p~~~~~d~~~~~p~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~Vp~~~llG 131 (312)
++|.++++.+++|+.+++.+.+.+.|.++.+|.++|++|.+.||+++.+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~l~~~Gl~~l~vP~----------------------------- 51 (373)
T cd01158 1 EEHQMIRKTVRDFAEKEIAPLAAEMDEKGEFPREVIKEMAELGLMGIPIPE----------------------------- 51 (373)
T ss_pred ChHHHHHHHHHHHHHHhcccchHHHhhcCCCCHHHHHHHHhCCCCcccCCH-----------------------------
Confidence 368899999999999999988888888888999999999999999999998
Q ss_pred cCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHHHHhcccccc
Q psy10338 132 GEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLLGVHNCN 211 (312)
Q Consensus 132 ~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~~~~~~g~~~ 211 (312)
T Consensus 52 -------------------------------------------------------------------------------- 51 (373)
T cd01158 52 -------------------------------------------------------------------------------- 51 (373)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCCCChhHhHHHHHHHHHHccCcchHHHhh----------------------------hcccceeeecCCCCCC
Q psy10338 212 VFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTALE----------------------------ASGLGAYCVTEPGAGS 263 (312)
Q Consensus 212 ~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~----------------------------g~~~~~~a~tEp~~gs 263 (312)
+|||.|.++.++..++|++++.|+++++... |..++++++|||++||
T Consensus 52 -----e~GG~g~~~~~~~~v~~~l~~~~~s~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~G~~~~~~a~se~~~gs 126 (373)
T cd01158 52 -----EYGGAGLDFLAYAIAIEELAKVDASVAVIVSVHNSLGANPIIKFGTEEQKKKYLPPLATGEKIGAFALSEPGAGS 126 (373)
T ss_pred -----HHCCCCCCHHHHHHHHHHHHhhCccHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCC
Confidence 6688888888888888888888887765322 3345589999999999
Q ss_pred CcCCceeEEEEeCCEEEEeeeeeeeeCCCcccEEEEEeccCC
Q psy10338 264 DVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFRY 305 (312)
Q Consensus 264 d~~~~~t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~~ 305 (312)
|...+.++|++++|||+|||+|.|+|++.+|||++|.+.+++
T Consensus 127 ~~~~~~~~a~~~~~g~~l~G~k~~vsg~~~ad~~lv~a~~~~ 168 (373)
T cd01158 127 DAAALKTTAKKDGDDYVLNGSKMWITNGGEADFYIVFAVTDP 168 (373)
T ss_pred CHHHCEeEEEEeCCEEEEeeEEEEEcCCCcCCEEEEEEEcCC
Confidence 998999999999999999999999999999999999865443
No 21
>KOG0138|consensus
Probab=99.86 E-value=3.5e-21 Score=165.23 Aligned_cols=170 Identities=24% Similarity=0.355 Sum_probs=114.2
Q ss_pred cCCCCCHHHHHHHHHHHHhhhhcccchhhhhhhcCCCCHHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcceecC
Q psy10338 46 FYSELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVP 125 (312)
Q Consensus 46 m~~~l~~~~~~l~~~~~~f~~~~~~p~~~~~d~~~~~p~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~Vp 125 (312)
++..|++|...+++.+|+++++++.|...+..+...||+++..+++++|++|..+--
T Consensus 51 l~dqLT~dE~air~~~Reycq~~l~Prvtea~r~e~F~~~i~pemGsmGvlG~tikG----------------------- 107 (432)
T KOG0138|consen 51 LEDQLTEDEIAIRDTFREYCQERLMPRVTEANRNEVFDREIIPEMGSMGVLGPTIKG----------------------- 107 (432)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHhhhHHHHHhhhccCChhhhhhhhccccccCcccC-----------------------
Confidence 345689999999999999999999999999999999999999999999999977652
Q ss_pred CCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHHHHh
Q psy10338 126 KENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLL 205 (312)
Q Consensus 126 ~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~~~~ 205 (312)
++..+++..+-|+..+-++..-.-. |.. =.| +..+
T Consensus 108 --------------------YGCaG~S~vaygl~~rEveRVDs~y--rs~--------~sV--------------qsSL- 142 (432)
T KOG0138|consen 108 --------------------YGCAGVSSVAYGLLAREVERVDSGY--RSA--------MSV--------------QSSL- 142 (432)
T ss_pred --------------------cCCCchHHHHHHHHHHHHHHhhhhc--hhh--------hhh--------------hhhh-
Confidence 1122222233333322221110000 000 000 0000
Q ss_pred cccccccccccccCCCChhHhHHHHHHHHHHccCcchHHHhhhcccceeeecCCCCCCCcCCceeEEEEeCCE--EEEee
Q psy10338 206 GVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTALEASGLGAYCVTEPGAGSDVNGVKTKAVKKGDE--WILNG 283 (312)
Q Consensus 206 ~~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g--~~l~G 283 (312)
.+.-+-.||.-. .--+. +|-+..+..++||++|||++|||+.++.|+|+.++++ |.|||
T Consensus 143 -----~m~~Iy~~GSE~-----------QkqkY---lPslA~g~~igcfgLTEPn~GSdpsgmeT~At~~e~~ktyklNG 203 (432)
T KOG0138|consen 143 -----VMGPIYAYGSEE-----------QKQKY---LPSLAKGKLIGCFGLTEPNHGSDPSGMETRATYDESNKTYKLNG 203 (432)
T ss_pred -----hhhhHhhcCCHH-----------HHhhh---hhhhhcCceeeEEeccCCCCCCCcccccceeEEccCCceEEECC
Confidence 000000111110 00111 2334468889999999999999999999999999886 99999
Q ss_pred eeeeeeCCCcccEEEEEec
Q psy10338 284 QKMWITNGGVANWQNRTRD 302 (312)
Q Consensus 284 ~k~~vs~~~~ad~~~v~~~ 302 (312)
+|+||+|++.||+++|.++
T Consensus 204 sKtWI~nsp~aDl~vvwAr 222 (432)
T KOG0138|consen 204 SKTWITNSPMADLFVVWAR 222 (432)
T ss_pred eeeeecCCcccceEEEEEe
Confidence 9999999999999999954
No 22
>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=99.84 E-value=8.4e-21 Score=177.00 Aligned_cols=140 Identities=25% Similarity=0.409 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHHhhhhcccchhhh-----hhhcCCCCHHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcceecCC
Q psy10338 52 ETQQEFQALARKFCREEIIPVAAE-----HDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPK 126 (312)
Q Consensus 52 ~~~~~l~~~~~~f~~~~~~p~~~~-----~d~~~~~p~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~Vp~ 126 (312)
++|+++++.+++|+++++.|.... ++..+.+|.+++++|.+.||+++.+|+
T Consensus 1 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~vP~------------------------ 56 (380)
T cd01152 1 PSEEAFRAEVRAWLAAHLPPELREESALGYREGREDRRRWQRALAAAGWAAPGWPK------------------------ 56 (380)
T ss_pred CcHHHHHHHHHHHHHhcCCccccccccccccccchHHHHHHHHHHhCCCCccCCCh------------------------
Confidence 478899999999999999886643 244567899999999999999999998
Q ss_pred CCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHHHHhc
Q psy10338 127 ENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLLG 206 (312)
Q Consensus 127 ~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~~~~~ 206 (312)
T Consensus 57 -------------------------------------------------------------------------------- 56 (380)
T cd01152 57 -------------------------------------------------------------------------------- 56 (380)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccCCCChhHhHHHHHHHHHHccCcchHHH-h--------------------------hhcccceeeecCC
Q psy10338 207 VHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTA-L--------------------------EASGLGAYCVTEP 259 (312)
Q Consensus 207 ~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~-~--------------------------~g~~~~~~a~tEp 259 (312)
+|||.|.++.+++.+.|++++.|.++++. . .++.+.++++|||
T Consensus 57 ----------~~GG~g~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~ 126 (380)
T cd01152 57 ----------EYGGRGASLMEQLIFREEMAAAGAPVPFNQIGIDLAGPTILAYGTDEQKRRFLPPILSGEEIWCQGFSEP 126 (380)
T ss_pred ----------hhCCCCCCHHHHHHHHHHHHhcCCCcccchhhHHHHHHHHHHhCCHHHHHHHhHHHhCCchhheeecCCC
Confidence 66888888888888888888877765542 1 1333568999999
Q ss_pred CCCCCcCCceeEEEEeCCEEEEeeeeeeeeCCCcccEEEEEeccCC
Q psy10338 260 GAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFRY 305 (312)
Q Consensus 260 ~~gsd~~~~~t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~~ 305 (312)
+.|||...+.|+|++++|||+|||+|.|||++.+||+++|.+.+++
T Consensus 127 ~~gsd~~~~~t~a~~~~~g~~L~G~K~~it~~~~ad~~lv~a~~~~ 172 (380)
T cd01152 127 GAGSDLAGLRTRAVRDGDDWVVNGQKIWTSGAHYADWAWLLVRTDP 172 (380)
T ss_pred CCCcchhhCeeeEEEcCCeEEEecEEEEEcCccccCEEEEEEEeCC
Confidence 9999999999999999999999999999999999999999976543
No 23
>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism]
Probab=99.84 E-value=2.9e-20 Score=174.15 Aligned_cols=147 Identities=37% Similarity=0.588 Sum_probs=118.2
Q ss_pred cCCCCCHHHHHHHHHHHHhhhhcccchhhhhhh---cCCCCHHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcce
Q psy10338 46 FYSELNETQQEFQALARKFCREEIIPVAAEHDR---TGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDV 122 (312)
Q Consensus 46 m~~~l~~~~~~l~~~~~~f~~~~~~p~~~~~d~---~~~~p~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv 122 (312)
|++.+++++.++++.+++|+++++.|...+++. .+.+|+++++++.+.|++++.+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~G~~~~~~p~-------------------- 60 (393)
T COG1960 1 MDFDLSEEQEALRAEVREFAEEELAPEAAEIDRRIEDERFPRELLRALAEAGLLGLTIPE-------------------- 60 (393)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHhcCcchhhhhhhcccccCHHHHHHHHHhCCcccCCCCh--------------------
Confidence 456677999999999999999999888777775 578899999999999999999998
Q ss_pred ecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHH
Q psy10338 123 RVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQL 202 (312)
Q Consensus 123 ~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~ 202 (312)
T Consensus 61 -------------------------------------------------------------------------------- 60 (393)
T COG1960 61 -------------------------------------------------------------------------------- 60 (393)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcccccccccccccCCCChhHhHHHHHHHHHHccCcchHH-------------------------------Hhhhccc
Q psy10338 203 MLLGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMT-------------------------------ALEASGL 251 (312)
Q Consensus 203 ~~~~~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~-------------------------------~~~g~~~ 251 (312)
+|||.+.+..+...+.|++++.+.+... +..|+.+
T Consensus 61 --------------e~GG~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~q~~~~l~~~~~G~~~ 126 (393)
T COG1960 61 --------------EYGGLGLSPLEQAAVLEELARADAGGALALGLTHGGLGALAPTILRFGTEEQKRRYLPRLASGELI 126 (393)
T ss_pred --------------hhCCCCcchhHHHHHHHHHHhhCcchhhhHHHhccccccchHHHHHcCCHHHHHHhchhhhCCchh
Confidence 4455556655566666666655543321 1225567
Q ss_pred ceeeecCCCCCCCcCCce-eEEEEeCCEEEEeeeeeeeeCCCcccEEEEEeccCCC
Q psy10338 252 GAYCVTEPGAGSDVNGVK-TKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFRYE 306 (312)
Q Consensus 252 ~~~a~tEp~~gsd~~~~~-t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~~~ 306 (312)
.|+++|||++|||+.+++ |++++++|+|+|||+|.||||+..|||++|+++++++
T Consensus 127 ~~~~~tEp~~Gsd~~~~~~t~a~~~~g~~~lnG~K~~is~~~~ad~~~v~Ar~~~~ 182 (393)
T COG1960 127 GAFALTEPGAGSDLASLRTTAAVRDDGDYVLNGQKIWISNAPVADWLLVLARTDPA 182 (393)
T ss_pred heeeccCCCCCcchhcCceeEEEecCCCEEEEeEEEEEcCCCCCCEEEEEEEcCCc
Confidence 799999999999999987 7777867779999999999999999999888776654
No 24
>PRK13026 acyl-CoA dehydrogenase; Reviewed
Probab=99.84 E-value=1.2e-20 Score=186.15 Aligned_cols=175 Identities=17% Similarity=0.192 Sum_probs=118.3
Q ss_pred cCCChhhhhhhhhhHHHHHHHHHHHHHHhhhcCcccccccccCCCCCHHHHHHHH-HHHHhhhhcccchhhhhhhcCCCC
Q psy10338 5 DKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQEFQA-LARKFCREEIIPVAAEHDRTGEYP 83 (312)
Q Consensus 5 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~m~~~l~~~~~~l~~-~~~~f~~~~~~p~~~~~d~~~~~p 83 (312)
++||.+++|+..+..+.-|..-.+..+.. .- -...+++|++.+.+ .++.+++ ..+.....++.+.+|
T Consensus 43 ~te~~a~~a~~~~~~~~lf~G~~~~~~l~---~~-------p~~~l~~eeq~fl~~~v~~l~~--~~~e~~~~~~~~~~P 110 (774)
T PRK13026 43 DTEREAMEAGDVWWEGELFSGKPDWQKLH---SY-------PKPTLTAEEQAFIDNEVETLLT--MLDDWDIVQNRKDLP 110 (774)
T ss_pred HHHHHHHhCCCcchhhhhcCCCCChhhcC---CC-------CccccCHHHHHHHHHHHHHHHh--hhhhhhhhhhhcCCC
Confidence 45666666666666555543322221111 00 12236666665554 6777765 122233345567899
Q ss_pred HHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHH
Q psy10338 84 WGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCL 163 (312)
Q Consensus 84 ~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l 163 (312)
+++|+++++.||+++.+|+
T Consensus 111 ~evw~~Lae~Gl~gl~IPe------------------------------------------------------------- 129 (774)
T PRK13026 111 PEVWDYLKKEGFFALIIPK------------------------------------------------------------- 129 (774)
T ss_pred HHHHHHHHHCCCCcCCCCh-------------------------------------------------------------
Confidence 9999999999999999998
Q ss_pred HHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHHHHhcccccccccccccCCCChhHhHHHHHHHHHHccCcchH
Q psy10338 164 DEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLLGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIM 243 (312)
Q Consensus 164 ~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~~~~~~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~ 243 (312)
+|||.|++..+...++|++++.+.+.+
T Consensus 130 -----------------------------------------------------eyGGlG~s~~~~a~V~eela~~~~s~a 156 (774)
T PRK13026 130 -----------------------------------------------------EYGGKGFSAYANSTIVSKIATRSVSAA 156 (774)
T ss_pred -----------------------------------------------------hhCCCCCCHHHHHHHHHHHHHhccchH
Confidence 557777777666677777765554432
Q ss_pred H-----------------------------HhhhcccceeeecCCCCCCCcCCceeEEE-----EeCC---EEEEeeeee
Q psy10338 244 T-----------------------------ALEASGLGAYCVTEPGAGSDVNGVKTKAV-----KKGD---EWILNGQKM 286 (312)
Q Consensus 244 ~-----------------------------~~~g~~~~~~a~tEp~~gsd~~~~~t~A~-----~~~~---g~~l~G~k~ 286 (312)
. +..|+.+.|+++|||++|||+.+++|+|+ ++|+ ||+|||+|.
T Consensus 157 ~~~~v~~slg~~~lL~~~GTeEQK~~yLP~LAsGe~i~afAlTEP~aGSDaasi~Ttav~t~a~~dGd~~~gwvLNG~K~ 236 (774)
T PRK13026 157 VTVMVPNSLGPGELLTHYGTQEQKDYWLPRLADGTEIPCFALTGPEAGSDAGAIPDTGIVCRGEFEGEEVLGLRLTWDKR 236 (774)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHhhhHHHhCCCeEEEEEecCCCCCCchhcccceeeeeeeeecCCccccEEEEEEEE
Confidence 1 12255677999999999999999986654 4666 699999999
Q ss_pred eeeCCCcccEEEEE-eccCC
Q psy10338 287 WITNGGVANWQNRT-RDFRY 305 (312)
Q Consensus 287 ~vs~~~~ad~~~v~-~~~~~ 305 (312)
|||++..||+++|. +.+++
T Consensus 237 ~IT~A~~Ad~~~v~ar~~dp 256 (774)
T PRK13026 237 YITLAPVATVLGLAFKLRDP 256 (774)
T ss_pred eecCccccCEEEEEEEeeCc
Confidence 99999999999765 43443
No 25
>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5. Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=99.82 E-value=1.6e-19 Score=169.78 Aligned_cols=133 Identities=28% Similarity=0.392 Sum_probs=105.4
Q ss_pred HHHHHHhhhhcccchhhhhhhcCC--------CC---HHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcceecCC
Q psy10338 58 QALARKFCREEIIPVAAEHDRTGE--------YP---WGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPK 126 (312)
Q Consensus 58 ~~~~~~f~~~~~~p~~~~~d~~~~--------~p---~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~Vp~ 126 (312)
++.+++|+.+++.|.+.++|.+.. || .++|++|.+.||+++.+|+
T Consensus 2 ~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~~p~~~~e~~~~l~~~Gl~~~~vP~------------------------ 57 (407)
T cd01153 2 LEEVARLAENVLAPLNADGDREGPVFDDGRVVVPPPFKEALDAFAEAGWMALGVPE------------------------ 57 (407)
T ss_pred hHHHHHHHHHHhhhhHHhHhccCCcccCCceEcChhHHHHHHHHHHCCCCCCCCcc------------------------
Confidence 578999999999999888887654 99 6789999999999999998
Q ss_pred CCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHHHHhc
Q psy10338 127 ENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLLG 206 (312)
Q Consensus 127 ~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~~~~~ 206 (312)
T Consensus 58 -------------------------------------------------------------------------------- 57 (407)
T cd01153 58 -------------------------------------------------------------------------------- 57 (407)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccCCCChhHhHHHHHHHHHHccCcchHHH--------------------------hhhcccceeeecCCC
Q psy10338 207 VHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTA--------------------------LEASGLGAYCVTEPG 260 (312)
Q Consensus 207 ~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~--------------------------~~g~~~~~~a~tEp~ 260 (312)
+|||.|.++.+...+.|+++++|.+++++ ..|+.+.++++|||+
T Consensus 58 ----------e~GG~g~~~~~~~~~~e~l~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~~l~~i~~G~~~~~~a~tEp~ 127 (407)
T cd01153 58 ----------EYGGQGLPITVYSALAEIFSRGDAPLMYASGTQGAAATLLAHGTEAQREKWIPRLAEGEWTGTMCLTEPD 127 (407)
T ss_pred ----------ccCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCC
Confidence 44555555555555666666555554432 225557799999999
Q ss_pred CCCCcCCceeEEEEe-CCEEEEeeeeeeeeCCCcc----cEEEEEeccC
Q psy10338 261 AGSDVNGVKTKAVKK-GDEWILNGQKMWITNGGVA----NWQNRTRDFR 304 (312)
Q Consensus 261 ~gsd~~~~~t~A~~~-~~g~~l~G~k~~vs~~~~a----d~~~v~~~~~ 304 (312)
+|||+..++|+|+++ +|+|+|||+|.|+|++.+| ++++|.++++
T Consensus 128 ~gsd~~~~~t~a~~~~~ggy~l~G~K~~is~~~~a~~~~~~~~v~a~~~ 176 (407)
T cd01153 128 AGSDLGALRTKAVYQADGSWRINGVKRFISAGEHDMSENIVHLVLARSE 176 (407)
T ss_pred CCCCcccceEEEEECCCCcEEEeeEEEEEeCCCcccccccEEEEEEeCC
Confidence 999999999999998 5789999999999999987 4667775543
No 26
>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2. FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=99.81 E-value=2e-19 Score=168.50 Aligned_cols=137 Identities=26% Similarity=0.344 Sum_probs=109.6
Q ss_pred HHHHHHHHHHhhhhcccchhhhhhhc-----------CCCCHHHHHHHHHcCCccccCCCCCCccCCcCCCcccEEEcce
Q psy10338 54 QQEFQALARKFCREEIIPVAAEHDRT-----------GEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDV 122 (312)
Q Consensus 54 ~~~l~~~~~~f~~~~~~p~~~~~d~~-----------~~~p~~~~~~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv 122 (312)
.++|++.+++|+++++.|...++|+. ..+++++|++++++||+++.+|+
T Consensus 3 ~~~~~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~P~-------------------- 62 (394)
T cd01155 3 AQELRARVKAFMEEHVYPAEQEFLEYYAEGGDRWWTPPPIIEKLKAKAKAEGLWNLFLPE-------------------- 62 (394)
T ss_pred HHHHHHHHHHHHHHhcCccHHHHHhhcccccccccCCchhHHHHHHHHHhCCCCCCCCCh--------------------
Confidence 57899999999999999988777743 12346899999999999999998
Q ss_pred ecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHHHHHH
Q psy10338 123 RVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQL 202 (312)
Q Consensus 123 ~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~~~~~ 202 (312)
T Consensus 63 -------------------------------------------------------------------------------- 62 (394)
T cd01155 63 -------------------------------------------------------------------------------- 62 (394)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcccccccccccccCCCChhHhHHHHHHHHHHccC-cchHH----------------------------Hhhhcccce
Q psy10338 203 MLLGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGC-TGIMT----------------------------ALEASGLGA 253 (312)
Q Consensus 203 ~~~~~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~-~~~~~----------------------------~~~g~~~~~ 253 (312)
+|||.|+++.+++.++|++++++ .+.++ +..|+.+++
T Consensus 63 --------------~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~ 128 (394)
T cd01155 63 --------------VSGLSGLTNLEYAYLAEETGRSFFAPEVFNCQAPDTGNMEVLHRYGSEEQKKQWLEPLLDGKIRSA 128 (394)
T ss_pred --------------hhCCCCcCHHHHHHHHHHHhhhcccchheeecccccccHHHHHHhCCHHHHHHHHHHHhCCCeEEE
Confidence 66888888888888888888764 21111 111455678
Q ss_pred eeecCCC-CCCCcCCceeEEEEeCCEEEEeeeeeeeeCCCc--ccEEEEEeccC
Q psy10338 254 YCVTEPG-AGSDVNGVKTKAVKKGDEWILNGQKMWITNGGV--ANWQNRTRDFR 304 (312)
Q Consensus 254 ~a~tEp~-~gsd~~~~~t~A~~~~~g~~l~G~k~~vs~~~~--ad~~~v~~~~~ 304 (312)
+++|||+ +|||..++.|+|++++|||+|||+|.||||+.+ +|+++|.+.++
T Consensus 129 ~a~tE~~~~gsd~~~~~t~a~~~~~g~~LnG~k~~vs~~~~~~a~~~~v~a~~~ 182 (394)
T cd01155 129 FAMTEPDVASSDATNIECSIERDGDDYVINGRKWWSSGAGDPRCKIAIVMGRTD 182 (394)
T ss_pred EEeCCCCCCCCchhhCEEEEEEECCEEEEEEEEEEEcCCCCCCCCEEEEEEEeC
Confidence 9999997 689999999999999999999999999999965 78999886544
No 27
>PTZ00456 acyl-CoA dehydrogenase; Provisional
Probab=99.80 E-value=4.2e-19 Score=173.58 Aligned_cols=62 Identities=27% Similarity=0.431 Sum_probs=53.2
Q ss_pred HHhhhcccceeeecCCCCCCCcCCceeEEEEeCC-EEEEeeeeeeeeCCCcc----cEEEEEeccCC
Q psy10338 244 TALEASGLGAYCVTEPGAGSDVNGVKTKAVKKGD-EWILNGQKMWITNGGVA----NWQNRTRDFRY 305 (312)
Q Consensus 244 ~~~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~~~-g~~l~G~k~~vs~~~~a----d~~~v~~~~~~ 305 (312)
.+..|++++++++|||++|||+..++|+|++++| +|+|||+|+|||++.++ ++++|++++++
T Consensus 175 ~l~sGe~~~t~alTEp~aGSD~~~l~T~A~~~gdG~y~L~G~K~fIt~g~~~~~~n~~~lVlAr~~~ 241 (622)
T PTZ00456 175 KLVSGEWSGTMCLTEPQCGTDLGQVKTKAEPSADGSYKITGTKIFISAGDHDLTENIVHIVLARLPN 241 (622)
T ss_pred HHhcCChhhhhhccCCccCCCcccCeeEEEECCCCcEEEeeEEEEecCCchhhccCcEEEEEEEecC
Confidence 3456888899999999999999999999999987 59999999999999884 57788866543
No 28
>PLN02876 acyl-CoA dehydrogenase
Probab=99.80 E-value=6e-19 Score=178.99 Aligned_cols=168 Identities=22% Similarity=0.250 Sum_probs=125.3
Q ss_pred CCCCHHHHHHHHHHHHhhhhcccchhhhhhhcC-------CCC-HHHHHHHH-HcCCccccCCCCCCccCCcCCCcccEE
Q psy10338 48 SELNETQQEFQALARKFCREEIIPVAAEHDRTG-------EYP-WGIVKKAH-ELGLINGHIPASEQNMGQRASDTRGIT 118 (312)
Q Consensus 48 ~~l~~~~~~l~~~~~~f~~~~~~p~~~~~d~~~-------~~p-~~~~~~l~-~~G~~~~~~P~~~~~~g~~~~~~~~v~ 118 (312)
|.+|++|+++++.+++|+++++.|...++++.. .+| .+.|+++. ++||+++.+|+..... .-.+.
T Consensus 400 ~~~s~~~~~l~~~~~~f~~~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~G~~~~~~p~~~~~~------~~~~~ 473 (822)
T PLN02876 400 FVPSEKVLELRKKLIKFMEDHIYPMENEFYKLAQSSSRWTVHPEEERLKELAKKEGLWNLWIPLDSAAR------ARKLL 473 (822)
T ss_pred cCCCHHHHHHHHHHHHHHHHHccCccHHHHhhcccccccccCcchHHHHHHHHHcCcccCCCCchhhhh------hhhcc
Confidence 678999999999999999999988776665321 377 68888876 9999999999831000 00111
Q ss_pred EcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHH
Q psy10338 119 FEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFER 198 (312)
Q Consensus 119 f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~ 198 (312)
|+|-
T Consensus 474 ~~~~---------------------------------------------------------------------------- 477 (822)
T PLN02876 474 FEDN---------------------------------------------------------------------------- 477 (822)
T ss_pred cccc----------------------------------------------------------------------------
Confidence 2211
Q ss_pred HHHHHHhcccccccccccccCCCChhHhHHHHHHHHHHccCcchHH-------------H----------------hhhc
Q psy10338 199 EIQLMLLGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMT-------------A----------------LEAS 249 (312)
Q Consensus 199 ~~~~~~~~~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~-------------~----------------~~g~ 249 (312)
..+..-..+.+|||.|++..+...++|++++++.+... + ..|+
T Consensus 478 --------~~~~~~~~~~~~GG~G~~~~~~~~~~Eelg~~~~~~~~~~~~~~~~~~~~~l~~~gt~eqk~~~L~~l~~G~ 549 (822)
T PLN02876 478 --------KHMVSGDSADQLLGAGLSNLEYGYLCEIMGRSVWAPQVFNCGAPDTGNMEVLLRYGNKEQQLEWLIPLLEGK 549 (822)
T ss_pred --------cccccccccccCCCCCCCHHHHHHHHHHHhccchHHHHhcccCcccccHHHHHHhCCHHHHHHHHHHHhCCC
Confidence 01112234558899999999999999999997643111 0 1155
Q ss_pred ccceeeecCCC-CCCCcCCceeEEEEeCCEEEEeeeeeeeeCC--CcccEEEEEeccCC
Q psy10338 250 GLGAYCVTEPG-AGSDVNGVKTKAVKKGDEWILNGQKMWITNG--GVANWQNRTRDFRY 305 (312)
Q Consensus 250 ~~~~~a~tEp~-~gsd~~~~~t~A~~~~~g~~l~G~k~~vs~~--~~ad~~~v~~~~~~ 305 (312)
.++++++|||+ +|||+.+++|+|++++|||+|||+|.|||++ ..||+++|.+.+++
T Consensus 550 ~~~~~a~tEp~~~gsd~~~~~t~a~~~g~g~vLnG~K~~vtga~~~~ad~~lv~ar~~~ 608 (822)
T PLN02876 550 IRSGFAMTEPQVASSDATNIECSIRRQGDSYVINGTKWWTSGAMDPRCRVLIVMGKTDF 608 (822)
T ss_pred ceeEEEecCCCccCcccccceEEEEEcCCEEEEEeEEEEecCCCCCCCCEEEEEEecCC
Confidence 56799999997 7899999999999999999999999999999 47999998866543
No 29
>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C. DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.
Probab=99.75 E-value=8.1e-18 Score=156.74 Aligned_cols=85 Identities=28% Similarity=0.326 Sum_probs=71.1
Q ss_pred ccCCCChhHhHHHHHHHHHHccCcchHHHhh---------------------------hcccceeeecCCCCCCCcCCce
Q psy10338 217 VSGGLELSVFDGCLVAEELAYGCTGIMTALE---------------------------ASGLGAYCVTEPGAGSDVNGVK 269 (312)
Q Consensus 217 ~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~---------------------------g~~~~~~a~tEp~~gsd~~~~~ 269 (312)
+|||.|+++.+...++|++++.|.++++++. |. +.+.++|||++++ +..+.
T Consensus 44 ~~GG~g~~~~~~~~~~e~la~~~~s~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~-~~~~a~tE~~~~~-~~~~~ 121 (377)
T cd01163 44 EYGGLGASLPDLYEVVRELAAADSNIAQALRAHFGFVEALLLAGPEQFRKRWFGRVLNGW-IFGNAVSERGSVR-PGTFL 121 (377)
T ss_pred hhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhCCC-eEEEeecCCCCCC-CCCce
Confidence 6799999999999999999999988775432 22 2356899998876 66778
Q ss_pred eEEEEeCCEEEEeeeeeeeeCCCcccEEEEEecc
Q psy10338 270 TKAVKKGDEWILNGQKMWITNGGVANWQNRTRDF 303 (312)
Q Consensus 270 t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~ 303 (312)
|++++++|||+|||+|.|||++.+|||++|+..+
T Consensus 122 ~~~~~~~~g~~lnG~K~~is~a~~Ad~~~v~a~~ 155 (377)
T cd01163 122 TATVRDGGGYVLNGKKFYSTGALFSDWVTVSALD 155 (377)
T ss_pred EEEEecCCEEEEeceEEeecCCccceEEEEEEEc
Confidence 8888889999999999999999999999998654
No 30
>KOG0140|consensus
Probab=99.73 E-value=7.2e-18 Score=145.32 Aligned_cols=104 Identities=67% Similarity=0.927 Sum_probs=94.9
Q ss_pred cCCccccCCCCCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHh
Q psy10338 93 LGLINGHIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALE 172 (312)
Q Consensus 93 ~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~ 172 (312)
.|-.|++.-++..++|++.+++-.+.|+||+||.+|+||.+|.||.+++..|+..|+.+++.++|++++|+|.+.+|+.+
T Consensus 213 ~dTpGlt~GkKE~nmGqr~sdTR~itFEDvrVP~~Nvlg~~G~GFkvAm~~fd~tRp~vAa~alG~A~r~ld~a~ky~~e 292 (408)
T KOG0140|consen 213 GDTPGLTRGKKEKNMGQRCSDTRGITFEDVRVPKENVLGAPGAGFKVAMGGFDKTRPNVAAGALGLAQRCLDEATKYALE 292 (408)
T ss_pred CCCCCcCcChhhhcccccCCCCceeeeeecccchhccccCCCccceehhhhccCCCCchhhhhhHHHHHHHHHHHHHHHH
Confidence 33344444447789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCcccchhhHHHHHHhhhH
Q psy10338 173 RKAFGVPIAAHQGMYLKIQYVSIF 196 (312)
Q Consensus 173 R~~fg~~l~~~q~v~~~l~~~a~~ 196 (312)
|++||.||.+||.+|++|++++.-
T Consensus 293 RK~FG~~iA~hQ~vqF~LAdMA~~ 316 (408)
T KOG0140|consen 293 RKAFGTPIANHQAVQFMLADMAIN 316 (408)
T ss_pred HHHhCcChhhhhhHHHHHHHHHHH
Confidence 999999999999999998877663
No 31
>KOG0141|consensus
Probab=99.70 E-value=3.4e-18 Score=147.44 Aligned_cols=107 Identities=36% Similarity=0.444 Sum_probs=99.7
Q ss_pred HHHHcCCccccCCCCCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHH
Q psy10338 89 KAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATK 168 (312)
Q Consensus 89 ~l~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ 168 (312)
-+.|.|+.|.....+.+++|++++++++++|+|++||+++++|++++|+-++|.-|+.+|+.+++..+|+++.++|.+..
T Consensus 224 FiVEkgm~GFs~~~KLdKlGmrgsdTcELvFed~~vpas~ilg~enkGvYvlMsgLd~ERLvla~gplglmqa~~d~~~~ 303 (421)
T KOG0141|consen 224 FIVEKGMPGFSTAQKLDKLGMRGSDTCELVFEDCKVPASNILGEENKGVYVLMSGLDLERLVLAAGPLGLMQAALDETFP 303 (421)
T ss_pred EEEcCCCcccccchhhHhhcCCCCcchheehhhccCcHHHhcCcCCceEEEEecCCChhHhhhccCchHHHHHHHHHhhh
Confidence 34577888887777999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCCCcccchhhHHHHHHhhh
Q psy10338 169 YALERKAFGVPIAAHQGMYLKIQYVSI 195 (312)
Q Consensus 169 ya~~R~~fg~~l~~~q~v~~~l~~~a~ 195 (312)
|+.+|++||++++++|.+|.+++++-.
T Consensus 304 Y~~qR~afgk~ig~fQ~~QgklAdmyT 330 (421)
T KOG0141|consen 304 YAHQRKAFGKKIGHFQLLQGKLADMYT 330 (421)
T ss_pred HHHHHHHhCCchhHHHHHHhHHHHHHH
Confidence 999999999999999999999765443
No 32
>PF02770 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle domain; InterPro: IPR006091 Acyl-CoA dehydrogenases (1.3.99.3 from EC) are a family of flavoproteins that catalyse the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with the concomitant reduction of enzyme-bound FAD. Different family members share a high sequence identity, catalytic mechanisms, and structural properties, but differ in the position of their catalytic bases and in their substrate binding specificity. Butyryl-CoA dehydrogenase [] prefers short chain substrates, medium chain- and long-chain acyl-CoA dehydrogenases prefer medium and long chain substrates, respectively, and Isovaleryl-CoA dehydrogenase [] prefers branched-chain substrates. The monomeric enzyme is folded into three domains of approximately equal size, where the N-terminal domain is all-alpha, the middle domain is an open (5,8) barrel, and the C-terminal domain is a four-helical bundle. The constituent families differ in the numbers of C-terminal domains. This entry represents the middle beta-barrel domain found in medium chain acyl-CoA dehydrogenases, as well as in the related peroxisomal acyl-CoA oxidase-II enzymes. Acyl-CoA oxidase (ACO; 1.3.3.6 from EC) catalyzes the first and rate-determining step of the peroxisomal beta-oxidation of fatty acids [].; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 3MDD_B 1UDY_C 3MDE_B 2UXW_A 3B96_A 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2D29_B ....
Probab=99.68 E-value=7.9e-17 Score=106.07 Aligned_cols=51 Identities=41% Similarity=0.706 Sum_probs=46.1
Q ss_pred eeeecCCCCCCCcCCceeEEEEeCCEEEEeeeeeeeeCCCcccEEEEEecc
Q psy10338 253 AYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDF 303 (312)
Q Consensus 253 ~~a~tEp~~gsd~~~~~t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~ 303 (312)
++|+|||++|+|+..++|+|++++++|+|||+|.||++++.||+++|++++
T Consensus 1 ~~a~tE~~~g~d~~~~~t~a~~~~~~~~L~G~K~~v~~~~~a~~~~v~ar~ 51 (52)
T PF02770_consen 1 AFALTEPGAGSDLAAVETTARRDGDGYVLNGEKRFVSNAPDADWFLVFART 51 (52)
T ss_dssp EEE--BTTBSSSGGG-SSEEEEETTEEEEEEEEEEEETTTTESEEEEEEEE
T ss_pred CEEEcCCCCCCCcccCEEEeecccceEEEeeEEEEECCcCccCEEEEEEEE
Confidence 689999999999999999999999999999999999999999999999765
No 33
>KOG0137|consensus
Probab=99.68 E-value=1.3e-16 Score=148.24 Aligned_cols=93 Identities=35% Similarity=0.564 Sum_probs=88.1
Q ss_pred CCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCccc
Q psy10338 103 SEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAA 182 (312)
Q Consensus 103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~ 182 (312)
+..++|++++.+++|.|++|.||.+|+||.+|.|+++++.+++.+|+.+++.++|.|+++++.+.+|+..|.||+.+|.+
T Consensus 277 ~e~k~GiKgsnt~~v~f~~~ki~~envlG~~G~G~kva~nilnsgR~~~aaa~~G~mkr~I~~~~d~~~~rtQ~g~~L~~ 356 (634)
T KOG0137|consen 277 PEKKMGIKGSNTAEVHFEGVKIPIENVLGKPGDGFKVAMNILNSGRFGMAAALLGLMKRIIEEAADYATNRTQFGKKLHD 356 (634)
T ss_pred chhhhcccccceeeeeeccccccHHHhcCCCCcchHHHHHHHccCCcchhHHHHHHHHHHHHHHHHHhhcceecCcchhh
Confidence 66789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHhhh
Q psy10338 183 HQGMYLKIQYVSI 195 (312)
Q Consensus 183 ~q~v~~~l~~~a~ 195 (312)
+..+|.+++.+..
T Consensus 357 ~~l~q~k~~~m~~ 369 (634)
T KOG0137|consen 357 FGLIQEKVAEMAS 369 (634)
T ss_pred hhhHHHHHHHHHH
Confidence 9999998654443
No 34
>PLN02636 acyl-coenzyme A oxidase
Probab=99.67 E-value=3.2e-16 Score=154.79 Aligned_cols=60 Identities=28% Similarity=0.465 Sum_probs=54.5
Q ss_pred HhhhcccceeeecCCCCCCCcCCceeEEEEe--CCEEEEe-----eeeeeeeCCCc-ccEEEEEeccC
Q psy10338 245 ALEASGLGAYCVTEPGAGSDVNGVKTKAVKK--GDEWILN-----GQKMWITNGGV-ANWQNRTRDFR 304 (312)
Q Consensus 245 ~~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~--~~g~~l~-----G~k~~vs~~~~-ad~~~v~~~~~ 304 (312)
+..++.++|+|+|||++|||+.+++|+|+++ +|+|+|| |+|+||+|+.. ||+++|++.+.
T Consensus 168 ~~~ge~ig~fA~TEpghGSdv~~leTtA~~d~~~defVLntP~~~g~K~wI~na~~~ad~~vV~Arl~ 235 (686)
T PLN02636 168 IDNLDYPGCFAMTELHHGSNVQGLQTTATFDPLTDEFVINTPNDGAIKWWIGNAAVHGKFATVFARLK 235 (686)
T ss_pred HhCCChhhhhhccCCCcccCcccCeeEEEEcCCCCeEEECCCCCCeEEEeecCCcccCCEEEEEEEec
Confidence 4467888999999999999999999999998 7899999 99999999975 99999997664
No 35
>cd01159 NcnH Naphthocyclinone hydroxylase. Naphthocyclinone is an aromatic polyketide and an antibiotic, which is active against Gram-positive bacteria. Polyketides are secondary metabolites, which have important biological functions such as antitumor, immunosupressive or antibiotic activities. NcnH is a hydroxylase involved in the biosynthesis of naphthocyclinone and possibly other polyketides.
Probab=99.66 E-value=3.1e-16 Score=145.81 Aligned_cols=88 Identities=15% Similarity=0.097 Sum_probs=67.1
Q ss_pred ccCCCChhHhHHHHHHHHHHccCcchHHHhhhcc-----cc--------eeeecCCC-CCCCcCCceeEEEEeCCEEEEe
Q psy10338 217 VSGGLELSVFDGCLVAEELAYGCTGIMTALEASG-----LG--------AYCVTEPG-AGSDVNGVKTKAVKKGDEWILN 282 (312)
Q Consensus 217 ~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~g~~-----~~--------~~a~tEp~-~gsd~~~~~t~A~~~~~g~~l~ 282 (312)
+|||.|+++.+...+.|++++.|++++++..... +. ..-..+++ ..++..++.|+|++++|||+||
T Consensus 44 e~GG~g~~~~~~~~~~e~la~~~~s~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~t~A~~~~~gy~ln 123 (370)
T cd01159 44 RYGGLEGDFAEFAEAIATLAEACGSAAWVASIVATHSRMLAAFPPEAQEEVWGDGPDTLLAGSYAPGGRAERVDGGYRVS 123 (370)
T ss_pred hcCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHhCCHHHHHHHhCCCCCceEEeeecCCceeEEeCCeEEEe
Confidence 7799999999999999999999999876432110 00 11123443 2233456788999999999999
Q ss_pred eeeeeeeCCCcccEEEEEeccC
Q psy10338 283 GQKMWITNGGVANWQNRTRDFR 304 (312)
Q Consensus 283 G~k~~vs~~~~ad~~~v~~~~~ 304 (312)
|+|.|||++.+|||++|.++++
T Consensus 124 G~K~~it~~~~ad~~~v~a~~~ 145 (370)
T cd01159 124 GTWPFASGCDHADWILVGAIVE 145 (370)
T ss_pred ccccCccCCCcCceeEeeeECC
Confidence 9999999999999999996654
No 36
>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product. AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates.
Probab=99.64 E-value=1.8e-15 Score=142.67 Aligned_cols=59 Identities=27% Similarity=0.298 Sum_probs=53.9
Q ss_pred ccceeeecCCCCCCCcCCceeEEEEe-CCEEEEeeeeeeeeCCCcccEEEEEeccCCCCCC
Q psy10338 250 GLGAYCVTEPGAGSDVNGVKTKAVKK-GDEWILNGQKMWITNGGVANWQNRTRDFRYEKPG 309 (312)
Q Consensus 250 ~~~~~a~tEp~~gsd~~~~~t~A~~~-~~g~~l~G~k~~vs~~~~ad~~~v~~~~~~~~~~ 309 (312)
.++++++|||++|||+.+++|+|+++ +|+|+|||+|+|+|++ .||+++|+++++++.++
T Consensus 147 ~~~~~~~TEp~~GSD~~~~~T~A~~~~g~~~~LnG~K~f~s~a-~Ad~~lv~Art~~~~~~ 206 (418)
T cd01154 147 LLGGTWMTEKQGGSDLGANETTAERSGGGVYRLNGHKWFASAP-LADAALVLARPEGAPAG 206 (418)
T ss_pred hhheeeecCCCcccchhhCeEEEEECCCCcEEEEEEEEEecCc-ccCEEEEEEECCCCCCC
Confidence 68899999999999999999999999 8999999999999999 99999999877655443
No 37
>PTZ00457 acyl-CoA dehydrogenase; Provisional
Probab=99.57 E-value=1.9e-14 Score=137.41 Aligned_cols=104 Identities=21% Similarity=0.196 Sum_probs=86.9
Q ss_pred HHHHHHhcc-cccccccccccCCCChhHhHHHHHHHHHHccCcchHHHhh----------------------------hc
Q psy10338 199 EIQLMLLGV-HNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTALE----------------------------AS 249 (312)
Q Consensus 199 ~~~~~~~~~-g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~----------------------------g~ 249 (312)
.+.+.+.++ ||.++.+|++|||.|++..+.+.++|++++.+.+.+.... |+
T Consensus 54 ~~~~~~~~l~Gl~gl~vPeeyGG~Gl~~~~~a~v~Eelgr~~~s~~l~~~~h~~l~~~~L~~~Gt~eqker~Lp~lasGe 133 (520)
T PTZ00457 54 QIRSNDKILGNLYGARIATEYGGLGLGHTAHALIYEEVGTNCDSKLLSTIQHSGFCTYLLSTVGSKELKGKYLTAMSDGT 133 (520)
T ss_pred HHHhchHhcCCccCCCCChhhCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCC
Confidence 344457788 9999999999999999999999999999997766442210 44
Q ss_pred ccceeeecCCCCCCCcCCceeEEEEe-CCEEEEeeeeeeeeCCCcccEEEEEeccC
Q psy10338 250 GLGAYCVTEPGAGSDVNGVKTKAVKK-GDEWILNGQKMWITNGGVANWQNRTRDFR 304 (312)
Q Consensus 250 ~~~~~a~tEp~~gsd~~~~~t~A~~~-~~g~~l~G~k~~vs~~~~ad~~~v~~~~~ 304 (312)
.+++++++| ++|||+..++|+|+++ +|+|+|||+|.|+ ++..||+++|+++++
T Consensus 134 ~i~A~AltE-~aGSD~a~i~TtA~~~~gg~wvLNG~K~~t-~g~~Ad~~lV~Art~ 187 (520)
T PTZ00457 134 IMMGWATEE-GCGSDISMNTTKASLTDDGSYVLTGQKRCE-FAASATHFLVLAKTL 187 (520)
T ss_pred cEEEEEeCC-CCCCccccceeEEEEcCCCeEEEEEEEEEE-cCchhcEEEEEeecC
Confidence 456999988 8999999999999986 5689999999965 899999999997654
No 38
>KOG0137|consensus
Probab=99.56 E-value=6.6e-15 Score=137.01 Aligned_cols=110 Identities=25% Similarity=0.322 Sum_probs=96.5
Q ss_pred hHHHHHHHHHhcccccccccccccCCCChhHhHHHHHHHHHHccCcchHHHhh---------------------------
Q psy10338 195 IFEREIQLMLLGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTALE--------------------------- 247 (312)
Q Consensus 195 ~~~~~~~~~~~~~g~~~~~~p~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~--------------------------- 247 (312)
-.+...++.+++.|.+++++|.+|+|.|+.+.++..+.|.++-+|.+.+..+.
T Consensus 109 ~~~~~t~e~l~elG~fgl~v~~e~~G~G~~ntq~arl~e~~~~~D~~v~~tl~ahq~i~~k~l~lyGt~~Qk~kYL~~La 188 (634)
T KOG0137|consen 109 KIEETTLEALRELGLFGLQVPSEFDGLGFCNTQYARLFEIVSVADLNVGVTLGAHQSIGLKGLLLYGTDEQKQKYLPKLA 188 (634)
T ss_pred ccchhHHHHHHHhCceeeccCcccCccccchHHHHHHhhccccccccceeeeccchhhheeeeeecCCHHHHHHHHHhhh
Confidence 34667889999999999999999999999999999999999987777664332
Q ss_pred -hcccceeeecCCCCCCCcCCceeEEEEe--CCEEEEeeeeeeeeCCCcccEEEEEeccC
Q psy10338 248 -ASGLGAYCVTEPGAGSDVNGVKTKAVKK--GDEWILNGQKMWITNGGVANWQNRTRDFR 304 (312)
Q Consensus 248 -g~~~~~~a~tEp~~gsd~~~~~t~A~~~--~~g~~l~G~k~~vs~~~~ad~~~v~~~~~ 304 (312)
|..+++||+|||..|||..+.+|+|+.. ++.|+|||.|.||||+..||+++|++.+.
T Consensus 189 Sg~~~~A~altE~s~Gsdaas~~~~a~~s~dg~~y~LNG~Kiwisn~g~Adif~VfAqt~ 248 (634)
T KOG0137|consen 189 SGKLIAAFALTEPSSGSDAASGRTTATLSPDGKHYVLNGSKIWISNGGLADIFTVFAQTE 248 (634)
T ss_pred cCCccceEEEecCCCCcccccceeeeeecCCCCeEEEcCeeEEEecCccceeeeeeeccc
Confidence 5566799999999999999999999874 56899999999999999999999996654
No 39
>PLN02312 acyl-CoA oxidase
Probab=99.51 E-value=7.8e-14 Score=137.73 Aligned_cols=61 Identities=26% Similarity=0.438 Sum_probs=54.4
Q ss_pred HhhhcccceeeecCCCCCCCcCCceeEEEEe--CCEEEEe-----eeeeeeeCC-CcccEEEEEeccCC
Q psy10338 245 ALEASGLGAYCVTEPGAGSDVNGVKTKAVKK--GDEWILN-----GQKMWITNG-GVANWQNRTRDFRY 305 (312)
Q Consensus 245 ~~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~--~~g~~l~-----G~k~~vs~~-~~ad~~~v~~~~~~ 305 (312)
+..++.++|+++|||++|||+.+++|+|+++ +|+|+|| |+|+||+|+ ..||+++|++.+..
T Consensus 180 ~~~ge~ig~fA~TEpghGSdv~~leTtAt~D~~~defVLNtPt~~g~K~wig~a~~~A~~~vV~Arl~~ 248 (680)
T PLN02312 180 TEDYVVKGCFAMTELGHGSNVRGIETVTTYDPKTEEFVINTPCESAQKYWIGGAANHATHTIVFSQLHI 248 (680)
T ss_pred HhCCCeeeEeeecCCCcCcchhcCeEEEEEeCCCCEEEECCCCCCeEEECccCCcccCCEEEEEEEECC
Confidence 4457889999999999999999999999998 4789999 799999998 79999999976653
No 40
>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit. Members of this protein family are the PimD proteins of species such as Rhodopseudomonas palustris, Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=99.45 E-value=1.6e-13 Score=127.84 Aligned_cols=85 Identities=26% Similarity=0.380 Sum_probs=79.2
Q ss_pred CCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHH
Q psy10338 111 ASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKI 190 (312)
Q Consensus 111 ~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l 190 (312)
+...+++.||||+||+++++|.+++||.+++..++.+|+.+++.++|+++++++.+++|+++|+|||+||+++|.||+++
T Consensus 203 g~~~~~l~fd~v~vp~~~~lg~~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qFG~pi~~~Q~vq~~l 282 (378)
T TIGR03203 203 GLHAADITFTGVVVGADAAIGDPENALPLIERVVDDARAALCAEAVGLMDESLKTTVEYIKTRKQFGVPIGSFQVLQHRA 282 (378)
T ss_pred CCceeeEEECCCcccHHhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecCccchhhHHHHHHH
Confidence 44568999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred HHhhh
Q psy10338 191 QYVSI 195 (312)
Q Consensus 191 ~~~a~ 195 (312)
+....
T Consensus 283 Adm~~ 287 (378)
T TIGR03203 283 ADMFV 287 (378)
T ss_pred HHHHH
Confidence 55444
No 41
>cd00567 ACAD Acyl-CoA dehydrogenase. Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isob
Probab=99.43 E-value=1.5e-12 Score=118.85 Aligned_cols=95 Identities=41% Similarity=0.612 Sum_probs=86.7
Q ss_pred CCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccc
Q psy10338 104 EQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAH 183 (312)
Q Consensus 104 ~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~ 183 (312)
+..+|+++.+++.+.|+||+||.+++++..+.|+......+...|+..++..+|+++++++.+++|+++|.+||.++.++
T Consensus 150 ~~~~G~~~~~~~~v~~~~v~Vp~~~~l~~~~~g~~~~~~~~~~~~~~~aa~~~G~a~~al~~~~~~~~~r~~~g~~~~~~ 229 (327)
T cd00567 150 WDKMGMRGSGTGELVFDDVRVPEDNLLGEEGGGFELAMKGLNVGRLLLAAVALGAARAALDEAVEYAKQRKQFGKPLAEF 229 (327)
T ss_pred cccccCCCCceEEEEECCEEecHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccc
Confidence 45567888889999999999999999999999999889999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHhhhHHH
Q psy10338 184 QGMYLKIQYVSIFER 198 (312)
Q Consensus 184 q~v~~~l~~~a~~~~ 198 (312)
|.+|+++........
T Consensus 230 ~~vq~~la~~~~~~~ 244 (327)
T cd00567 230 QAVQFKLADMAAELE 244 (327)
T ss_pred hHHHHHHHHHHHHHH
Confidence 999999776655443
No 42
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed
Probab=99.41 E-value=2.4e-13 Score=135.23 Aligned_cols=93 Identities=18% Similarity=0.279 Sum_probs=84.6
Q ss_pred CCCccCCcCCCcccEEEcceecCCCCccccC---CccHHHHHhhhhccC-hhHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q psy10338 103 SEQNMGQRASDTRGITFEDVRVPKENVLLGE---GAGFKIAMDTFDKTR-PPVAAGAVGLAQRCLDEATKYALERKAFGV 178 (312)
Q Consensus 103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~---g~G~~~~~~~l~~~R-~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~ 178 (312)
...++|++ ..++++.|+||+||.+++||.+ |+||.+++..|+.+| +.+++.++|+++.+++.+++|+++|+|||+
T Consensus 286 ~~~~lG~r-~~~g~v~fddV~VP~d~lLG~~~~~G~G~~~l~~~L~~gR~i~laA~avG~ar~al~~Av~YA~~R~QFG~ 364 (777)
T PRK09463 286 RHFPLNVP-FQNGPTRGKDVFIPLDYIIGGPKMAGQGWRMLMECLSVGRGISLPSNSTGGAKLAALATGAYARIRRQFKL 364 (777)
T ss_pred cccccCcc-cccceEEeeeeecCHHHhcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 45567777 5688999999999999999974 899999999999999 899999999999999999999999999999
Q ss_pred CcccchhhHHHHHHhhhH
Q psy10338 179 PIAAHQGMYLKIQYVSIF 196 (312)
Q Consensus 179 ~l~~~q~v~~~l~~~a~~ 196 (312)
||+++|.||++++.....
T Consensus 365 pIg~fQaVQ~~LAdma~~ 382 (777)
T PRK09463 365 PIGKFEGIEEPLARIAGN 382 (777)
T ss_pred ChhhcHHHHHHHHHHHHH
Confidence 999999999997765553
No 43
>PRK13026 acyl-CoA dehydrogenase; Reviewed
Probab=99.41 E-value=4.9e-13 Score=132.60 Aligned_cols=92 Identities=18% Similarity=0.329 Sum_probs=83.7
Q ss_pred CCCccCCcCCCcccEEEcceecCCCCccccC---CccHHHHHhhhhccC-hhHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q psy10338 103 SEQNMGQRASDTRGITFEDVRVPKENVLLGE---GAGFKIAMDTFDKTR-PPVAAGAVGLAQRCLDEATKYALERKAFGV 178 (312)
Q Consensus 103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~---g~G~~~~~~~l~~~R-~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~ 178 (312)
...++|++.. ++++.||||+||.+++||.+ |+||.+++..|+.+| +.+++.++|+++.|++.+++|+++|+|||+
T Consensus 285 ~~~~lG~~~~-~g~v~fdDV~VP~d~lLG~~~~~G~G~~~l~~~L~~gR~i~laA~a~G~A~~al~~Av~YA~~R~QFG~ 363 (774)
T PRK13026 285 RHNPLGMAFM-NGTTRGKDVFIPLDWIIGGPDYAGRGWRMLVECLSAGRGISLPALGTASGHMATRTTGAYAYVRRQFGM 363 (774)
T ss_pred cccccccCcc-cceEEEeeeEccHHHhcCCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3455677753 58999999999999999975 899999999999999 899999999999999999999999999999
Q ss_pred CcccchhhHHHHHHhhh
Q psy10338 179 PIAAHQGMYLKIQYVSI 195 (312)
Q Consensus 179 ~l~~~q~v~~~l~~~a~ 195 (312)
||+++|.||++++....
T Consensus 364 pIg~fQ~Vq~~LAdma~ 380 (774)
T PRK13026 364 PIGQFEGVQEALARIAG 380 (774)
T ss_pred CccccHHHHHHHHHHHH
Confidence 99999999999887765
No 44
>PLN02636 acyl-coenzyme A oxidase
Probab=99.39 E-value=5.3e-13 Score=132.16 Aligned_cols=92 Identities=26% Similarity=0.408 Sum_probs=84.0
Q ss_pred CCCccCCcCCCcccEEEcceecCCCCcccc----------------CCccHHHHHhhhhccChhHHHHHHHHHHHHHHHH
Q psy10338 103 SEQNMGQRASDTRGITFEDVRVPKENVLLG----------------EGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEA 166 (312)
Q Consensus 103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~----------------~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a 166 (312)
..+++|+++.+++.+.||||+||.+++||. +++||.++...|..+|+.+++.++|+++++++.+
T Consensus 273 ~~~K~G~~g~dng~l~FdnVrVP~~nlLg~~g~v~~~G~y~~~~~~~~~gf~~~~~~l~~~R~~iaa~a~g~a~~Al~iA 352 (686)
T PLN02636 273 CGHKVGLNGVDNGALRFRSVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELVGGRVGLAYGSVGVLKASNTIA 352 (686)
T ss_pred CCCccCCCCCcceEEEEeeEEECHHHhccccccccCCCcccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357889999999999999999999999953 2579999999999999999999999999999999
Q ss_pred HHHHHhhccCCCC------cccchhhHHHHHHhh
Q psy10338 167 TKYALERKAFGVP------IAAHQGMYLKIQYVS 194 (312)
Q Consensus 167 ~~ya~~R~~fg~~------l~~~q~v~~~l~~~a 194 (312)
++|+.+|+|||.| |.++|.+|+++....
T Consensus 353 vrYa~~R~qFg~p~~~e~~I~d~q~vQ~~La~~l 386 (686)
T PLN02636 353 IRYSLLRQQFGPPKQPEISILDYQSQQHKLMPML 386 (686)
T ss_pred HHHHHcCEeCCCCCCCCCcccccHHHHHHHHHHH
Confidence 9999999999999 999999999955433
No 45
>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism]
Probab=99.37 E-value=1.4e-12 Score=122.14 Aligned_cols=94 Identities=46% Similarity=0.622 Sum_probs=87.6
Q ss_pred CCcc-CCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCccc
Q psy10338 104 EQNM-GQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAA 182 (312)
Q Consensus 104 ~~~~-g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~ 182 (312)
.... |+++.++++++|+||+||.++++|+++.||.+++..++.+|+.+++.++|.++.+++.+++|+++|++|++++.+
T Consensus 207 ~~~~~G~r~~~~~~v~f~~v~vp~~~lig~~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~~~~ya~~R~~fg~~i~~ 286 (393)
T COG1960 207 ILKKMGLRGSATGEVFFDDVRVPAENLLGEEGDGFKIAMETLNVERLGIAAQALGIAEAALEEAVAYARERKQFGRPIAD 286 (393)
T ss_pred ccCcCCcCCCCeeEEEECCeeccHHHcCCcCCchHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCchhh
Confidence 3445 899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHhhhHH
Q psy10338 183 HQGMYLKIQYVSIFE 197 (312)
Q Consensus 183 ~q~v~~~l~~~a~~~ 197 (312)
+|.+|++++......
T Consensus 287 ~~~vq~~la~~~~~~ 301 (393)
T COG1960 287 FQLVQFKLADMAAEL 301 (393)
T ss_pred cHHHHHHHHHHHHHH
Confidence 999999977665543
No 46
>cd01157 MCAD Medium chain acyl-CoA dehydrogenase. MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer.
Probab=99.36 E-value=1.8e-12 Score=120.88 Aligned_cols=94 Identities=76% Similarity=1.088 Sum_probs=87.7
Q ss_pred CCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCccc
Q psy10338 103 SEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAA 182 (312)
Q Consensus 103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~ 182 (312)
.+.++|+++.+++++.|+||+||.++++|.++.||.++...++..|+.+++.++|+++++++.+++|+++|.+||+++.+
T Consensus 196 ~~~~~G~~~~~s~~~~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r~~~aa~~lG~a~~~l~~~~~~~~~R~~fg~~i~~ 275 (378)
T cd01157 196 KELNMGQRCSDTRGITFEDVRVPKENVLIGEGAGFKIAMGAFDKTRPPVAAGAVGLAQRALDEATKYALERKTFGKLIAE 275 (378)
T ss_pred cccccCCCCCCceEEEeccEEECHHHcCCCCCchHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCccHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHhhhH
Q psy10338 183 HQGMYLKIQYVSIF 196 (312)
Q Consensus 183 ~q~v~~~l~~~a~~ 196 (312)
+|.+|+++......
T Consensus 276 ~q~vq~~la~~~~~ 289 (378)
T cd01157 276 HQAVSFMLADMAMK 289 (378)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999997765544
No 47
>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase. Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase.
Probab=99.36 E-value=1.5e-12 Score=121.09 Aligned_cols=95 Identities=36% Similarity=0.530 Sum_probs=87.9
Q ss_pred CCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCccc
Q psy10338 103 SEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAA 182 (312)
Q Consensus 103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~ 182 (312)
+++.+|+++.+++++.|+||+||+++++|.++.||..+...++.+|+.+++..+|+++++++.+++|+++|++||+|+.+
T Consensus 193 ~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~~~a~~~~G~a~~al~~a~~~~~~R~~fg~~i~~ 272 (372)
T TIGR03207 193 RFDCHGQRAIGRGSIFFENVRVPADHMLGNEGQGFVQVMQGFDFSRALIGLQVLAVARAALDETWRYVAERQAFGKPLSA 272 (372)
T ss_pred cchhccCCCCCeeEEEECceeccHHHcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCchhh
Confidence 46678889989999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHhhhHH
Q psy10338 183 HQGMYLKIQYVSIFE 197 (312)
Q Consensus 183 ~q~v~~~l~~~a~~~ 197 (312)
+|.||++++......
T Consensus 273 ~q~v~~~la~~~~~~ 287 (372)
T TIGR03207 273 FQGVSHPLADAETQV 287 (372)
T ss_pred hHhHHHHHHHHHHHH
Confidence 999999977655543
No 48
>cd01160 LCAD Long chain acyl-CoA dehydrogenase. LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer.
Probab=99.36 E-value=2e-12 Score=120.28 Aligned_cols=101 Identities=35% Similarity=0.431 Sum_probs=91.6
Q ss_pred cccCCCCCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccC
Q psy10338 97 NGHIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAF 176 (312)
Q Consensus 97 ~~~~P~~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~f 176 (312)
++.+...++.+|+++.+++++.|+||+||.+++||.++.|+......+...|+.+++..+|+++++++.+++|+++|.+|
T Consensus 186 gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~~~~~aa~~lG~a~~al~~a~~~a~~R~~~ 265 (372)
T cd01160 186 GFSRGRKLKKMGWKAQDTAELFFDDCRVPAENLLGEENKGFYYLMQNLPQERLLIAAGALAAAEFMLEETRNYVKQRKAF 265 (372)
T ss_pred CeecCCccccccCCCCCeEEEEecceEccHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 33444457889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccchhhHHHHHHhhhHH
Q psy10338 177 GVPIAAHQGMYLKIQYVSIFE 197 (312)
Q Consensus 177 g~~l~~~q~v~~~l~~~a~~~ 197 (312)
|+++.++|.+|+++.......
T Consensus 266 g~~i~~~q~vq~~la~~~~~~ 286 (372)
T cd01160 266 GKTLAQLQVVRHKIAELATKV 286 (372)
T ss_pred CccHHhhHHHHHHHHHHHHHH
Confidence 999999999999987665544
No 49
>PLN02312 acyl-CoA oxidase
Probab=99.35 E-value=1.1e-12 Score=129.57 Aligned_cols=90 Identities=24% Similarity=0.412 Sum_probs=83.5
Q ss_pred CCCCccCCcCCCcccEEEcceecCCCCcccc----------------CCccHHHHHhhhhccChhHHHHHHHHHHHHHHH
Q psy10338 102 ASEQNMGQRASDTRGITFEDVRVPKENVLLG----------------EGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDE 165 (312)
Q Consensus 102 ~~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~----------------~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~ 165 (312)
+..+++|+++.+++.+.||||+||.+++||. +++||.+++..|..+|+.+++.++|+++++++.
T Consensus 277 ~~~~K~G~~g~dng~l~FdnVrVP~~nlLg~~~~V~~~G~y~~~~~~~~~gf~~~~~~l~~~R~~iaa~a~g~a~~Al~i 356 (680)
T PLN02312 277 DCGHKIGLNGVDNGRIWFDNLRIPRENLLNSVADVSPDGKYVSAIKDPDQRFGAFLAPLTSGRVTIAVSAIYSSKVGLAI 356 (680)
T ss_pred cCCCcccccCCCceEEEEccEEECHHHhCCccceeCCCCceecCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567889999999999999999999999984 578999999999999999999999999999999
Q ss_pred HHHHHHhhccCCC----C---cccchhhHHHHH
Q psy10338 166 ATKYALERKAFGV----P---IAAHQGMYLKIQ 191 (312)
Q Consensus 166 a~~ya~~R~~fg~----~---l~~~q~v~~~l~ 191 (312)
+++|+++|+|||. | |.++|.+|+++.
T Consensus 357 AvrYa~~R~QFg~~~~~~E~~I~dyq~~Q~rLa 389 (680)
T PLN02312 357 AIRYSLSRRAFSVTPNGPEVLLLDYPSHQRRLL 389 (680)
T ss_pred HHHHHHhCeecCCCCCCccchHhhhHHHHHHHH
Confidence 9999999999995 4 999999999965
No 50
>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional
Probab=99.34 E-value=2.6e-12 Score=121.13 Aligned_cols=95 Identities=39% Similarity=0.453 Sum_probs=88.4
Q ss_pred CCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCccc
Q psy10338 103 SEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAA 182 (312)
Q Consensus 103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~ 182 (312)
.++.+|+++.+++++.|+||+||++++||.++.|+......++..|+.+++.++|+++++++.+++|+++|.+||+|+.+
T Consensus 226 ~~~~~G~r~~~~~~l~f~~v~Vp~~~~lg~~g~g~~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~i~~ 305 (410)
T PTZ00461 226 KIDKCGMRASHMCQLFFEDVVVPAENLLGEEGKGMVGMMRNLELERVTLAAMAVGIAERSVELMTSYASERKAFGKPISN 305 (410)
T ss_pred CCcccCCCCCceEEEEEcceecCHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCcCHHh
Confidence 46788999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHhhhHH
Q psy10338 183 HQGMYLKIQYVSIFE 197 (312)
Q Consensus 183 ~q~v~~~l~~~a~~~ 197 (312)
+|.+|++++......
T Consensus 306 ~q~vq~~la~~~~~l 320 (410)
T PTZ00461 306 FGQIQRYIAEGYADT 320 (410)
T ss_pred hHHHHHHHHHHHHHH
Confidence 999999977655543
No 51
>PRK12341 putative acyl-CoA dehydrogenase; Provisional
Probab=99.34 E-value=2.3e-12 Score=120.27 Aligned_cols=95 Identities=27% Similarity=0.409 Sum_probs=88.7
Q ss_pred CCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCccc
Q psy10338 103 SEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAA 182 (312)
Q Consensus 103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~ 182 (312)
+++++|+++.+++.+.|+||+||+++++|.++.|+..+...++.+|+.+++.++|+++++++.+++|+++|.+||+|+.+
T Consensus 197 ~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r~~~aa~~lG~a~~al~~~~~~~~~R~~~g~~i~~ 276 (381)
T PRK12341 197 PLHKIGWHMLSTCEVYLDNVEVEESDLVGEEGMGFLNVMYNFEMERLINAARSLGFAECAFEDAARYANQRIQFGKPIGH 276 (381)
T ss_pred ccccccCCCCCceEEEECcEEecHHHcCCCCChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCccHHH
Confidence 46788999999999999999999999999999999988889999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHhhhHH
Q psy10338 183 HQGMYLKIQYVSIFE 197 (312)
Q Consensus 183 ~q~v~~~l~~~a~~~ 197 (312)
+|.+|+++.......
T Consensus 277 ~~~v~~~la~~~~~~ 291 (381)
T PRK12341 277 NQLIQEKLTLMAIKI 291 (381)
T ss_pred hHHHHHHHHHHHHHH
Confidence 999999987666543
No 52
>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated
Probab=99.34 E-value=2.6e-12 Score=119.95 Aligned_cols=96 Identities=29% Similarity=0.412 Sum_probs=89.0
Q ss_pred CCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCccc
Q psy10338 103 SEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAA 182 (312)
Q Consensus 103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~ 182 (312)
+++++|+++.+++++.||||+||+++++|.++.|+......++.+|+.+++.++|+++++++.+++|+++|++||+|+.+
T Consensus 196 ~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~g~g~~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~a~~R~~fg~~i~~ 275 (380)
T PRK03354 196 KLEKLGLRMDSCCEITFDDVELDEKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGR 275 (380)
T ss_pred cccccCCCCCCeEEEEEccEEecHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccHHH
Confidence 57889999999999999999999999999999999888888899999999999999999999999999999999999999
Q ss_pred chhhHHHHHHhhhHHH
Q psy10338 183 HQGMYLKIQYVSIFER 198 (312)
Q Consensus 183 ~q~v~~~l~~~a~~~~ 198 (312)
+|.+|+++........
T Consensus 276 ~q~vq~~la~~~~~~~ 291 (380)
T PRK03354 276 FQLIQEKFAHMAIKLN 291 (380)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 9999999877666543
No 53
>cd01162 IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer.
Probab=99.34 E-value=2.9e-12 Score=119.39 Aligned_cols=95 Identities=43% Similarity=0.609 Sum_probs=88.1
Q ss_pred CCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCccc
Q psy10338 103 SEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAA 182 (312)
Q Consensus 103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~ 182 (312)
.+..+|+++.+++++.||||+||.++++|.++.|+.+....+...|+.+++..+|.++++++.+++|+++|.+||+|+.+
T Consensus 192 ~~~~~g~~~~~~~~l~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~~~aa~~lG~a~~al~~~~~~a~~R~~fg~~l~~ 271 (375)
T cd01162 192 NEKKMGWNAQPTRAVIFEDCRVPVENRLGGEGQGFGIAMAGLNGGRLNIASCSLGAAQAALDLARAYLEERKQFGKPLAD 271 (375)
T ss_pred cccccCCCCCCeeEEEECceEecHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccHHh
Confidence 45678999999999999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHhhhHH
Q psy10338 183 HQGMYLKIQYVSIFE 197 (312)
Q Consensus 183 ~q~v~~~l~~~a~~~ 197 (312)
+|.+|+++.......
T Consensus 272 ~~~vq~~la~~~~~l 286 (375)
T cd01162 272 FQALQFKLADMATEL 286 (375)
T ss_pred hHHHHHHHHHHHHHH
Confidence 999999977655543
No 54
>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2. FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=99.33 E-value=2.9e-12 Score=120.14 Aligned_cols=96 Identities=32% Similarity=0.438 Sum_probs=87.9
Q ss_pred CCCccCCcC--CCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCc
Q psy10338 103 SEQNMGQRA--SDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPI 180 (312)
Q Consensus 103 ~~~~~g~~~--~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l 180 (312)
.++++|+++ ..++++.|+||+||+++++|.+++|+.+....++.+|+..++.++|+++++++.+++|+++|.+||+|+
T Consensus 209 ~~~~~G~r~~~t~s~~v~f~dv~Vp~~~~lg~~~~g~~~~~~~~~~~r~~~~a~~lG~a~~al~~~~~~~~~R~~fg~~i 288 (394)
T cd01155 209 PLSVFGYDDAPHGHAEITFDNVRVPASNLILGEGRGFEIAQGRLGPGRIHHCMRLIGAAERALELMCQRAVSREAFGKKL 288 (394)
T ss_pred cccccCCCCCCCCeeEEEEccEEecHHHcCCCCChHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCcH
Confidence 577889997 467899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHHHhhhHHH
Q psy10338 181 AAHQGMYLKIQYVSIFER 198 (312)
Q Consensus 181 ~~~q~v~~~l~~~a~~~~ 198 (312)
.++|.+|++++.......
T Consensus 289 ~~~q~vq~~la~~~~~l~ 306 (394)
T cd01155 289 AQHGVVAHWIAKSRIEIE 306 (394)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 999999999876655433
No 55
>cd01156 IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.
Probab=99.33 E-value=3.3e-12 Score=118.97 Aligned_cols=95 Identities=37% Similarity=0.522 Sum_probs=88.7
Q ss_pred CCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCccc
Q psy10338 103 SEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAA 182 (312)
Q Consensus 103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~ 182 (312)
.++++|+++.+++++.|+||+||+++++|..+.|+.+++..++.+|+.+++.++|+++++++.+++|+++|++||+|+.+
T Consensus 195 ~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r~~~aa~~lG~a~~al~~~~~~~~~R~~~g~~i~~ 274 (376)
T cd01156 195 KLDKLGMRGSNTCELVFEDCEVPEENILGGENKGVYVLMSGLDYERLVLAGGPIGIMQAALDVAIPYAHQRKQFGQPIGE 274 (376)
T ss_pred ccccccCCCCCceEEEeCceEecHHHcCCCCCchHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCcchHH
Confidence 56778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHhhhHH
Q psy10338 183 HQGMYLKIQYVSIFE 197 (312)
Q Consensus 183 ~q~v~~~l~~~a~~~ 197 (312)
+|.+|+++.......
T Consensus 275 ~~~v~~~la~~~~~l 289 (376)
T cd01156 275 FQLVQGKLADMYTRL 289 (376)
T ss_pred hHHHHHHHHHHHHHH
Confidence 999999977655543
No 56
>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase. VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer.
Probab=99.33 E-value=3.4e-12 Score=120.27 Aligned_cols=95 Identities=37% Similarity=0.623 Sum_probs=88.7
Q ss_pred CCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCccc
Q psy10338 103 SEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAA 182 (312)
Q Consensus 103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~ 182 (312)
.++++|+++.+++++.|+||+||+++++|.++.|+..++..++.+|+.+++.++|+++++++.+++|+++|.+||+++.+
T Consensus 223 ~~~~~G~~g~~s~~v~~~~v~Vp~~~~lg~~g~g~~~~~~~l~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~fg~~l~~ 302 (409)
T cd01161 223 PEKKMGIKGSNTAEVYFEDVKIPVENVLGEVGDGFKVAMNILNNGRFGMGAALIGTMKRCIEKAVDYANNRKQFGKKIHE 302 (409)
T ss_pred cccccCCCCCCceEEEeccEEECHHHcCCCCChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhceeCCccHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHhhhHH
Q psy10338 183 HQGMYLKIQYVSIFE 197 (312)
Q Consensus 183 ~q~v~~~l~~~a~~~ 197 (312)
+|.+|+++.......
T Consensus 303 ~q~vq~~la~~~~~~ 317 (409)
T cd01161 303 FGLIQEKLANMAILQ 317 (409)
T ss_pred hHHHHHHHHHHHHHH
Confidence 999999977655543
No 57
>PLN02519 isovaleryl-CoA dehydrogenase
Probab=99.32 E-value=4.1e-12 Score=119.54 Aligned_cols=97 Identities=37% Similarity=0.522 Sum_probs=89.4
Q ss_pred CCCCCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q psy10338 100 IPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVP 179 (312)
Q Consensus 100 ~P~~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~ 179 (312)
+...++++|+++.+++++.|+||+||+++++|..+.|+......++..|+.+++..+|+++++++.+++|+++|.+||+|
T Consensus 218 ~~~~~~~~G~rgt~s~~v~f~~v~Vp~~~~lg~~~~G~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~~g~p 297 (404)
T PLN02519 218 TAQKLDKLGMRGSDTCELVFENCFVPEENVLGQEGKGVYVMMSGLDLERLVLAAGPLGLMQACLDVVLPYVRQREQFGRP 297 (404)
T ss_pred ccCcccccCCCCCCeeEEEeCeEEecHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhceeCCcc
Confidence 33357788999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred cccchhhHHHHHHhhhH
Q psy10338 180 IAAHQGMYLKIQYVSIF 196 (312)
Q Consensus 180 l~~~q~v~~~l~~~a~~ 196 (312)
+.++|.+|++++.....
T Consensus 298 l~~~~~v~~~la~~~~~ 314 (404)
T PLN02519 298 IGEFQFIQGKLADMYTS 314 (404)
T ss_pred HHHhHHHHHHHHHHHHH
Confidence 99999999997766554
No 58
>PRK11561 isovaleryl CoA dehydrogenase; Provisional
Probab=99.32 E-value=3.7e-12 Score=122.57 Aligned_cols=90 Identities=24% Similarity=0.386 Sum_probs=84.1
Q ss_pred CCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCccc
Q psy10338 103 SEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAA 182 (312)
Q Consensus 103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~ 182 (312)
..+++|+++.++++|.|+|| .+++||++++|+.++...++.+|+..++.++|+++++++.+++|+++|++||++|++
T Consensus 257 l~~klG~r~~~t~ev~f~dv---~~~llG~~g~G~~~i~~~l~~~Rl~~a~~a~G~a~~Al~~A~~yA~~R~~FG~~L~~ 333 (538)
T PRK11561 257 LKDKLGNRSNASSEVEFQDA---IGWLLGEEGEGIRLILKMGGMTRFDCALGSHGLMRRAFSVAIYHAHQRQVFGKPLIE 333 (538)
T ss_pred ccccccCCCCceeEEEECCH---HHHHCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCCcccc
Confidence 46789999999999999999 389999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHhhh
Q psy10338 183 HQGMYLKIQYVSI 195 (312)
Q Consensus 183 ~q~v~~~l~~~a~ 195 (312)
+|.+|++++....
T Consensus 334 ~q~vq~~LAdm~~ 346 (538)
T PRK11561 334 QPLMRQVLSRMAL 346 (538)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999765444
No 59
>cd01151 GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.
Probab=99.30 E-value=7.6e-12 Score=117.01 Aligned_cols=96 Identities=33% Similarity=0.473 Sum_probs=87.5
Q ss_pred CCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCccc
Q psy10338 103 SEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAA 182 (312)
Q Consensus 103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~ 182 (312)
.++++|+++.+++++.|+||+||++++++. +.|+..+...++..|+.+++.++|+++++++.+++|+++|.+||+|+.+
T Consensus 202 ~~~~~G~~g~~s~~v~f~~v~Vp~~~~l~~-~~g~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~~g~~i~~ 280 (386)
T cd01151 202 IQGKFSLRASITGEIVMDNVFVPEENLLPG-AEGLRGPFKCLNNARYGIAWGALGAAEDCYHTARQYVLDRKQFGRPLAA 280 (386)
T ss_pred CCCCcCCCCCceeEEEEccEEeCHHHcCCc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCCchhh
Confidence 467889999999999999999999999986 5799888899999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHhhhHHHH
Q psy10338 183 HQGMYLKIQYVSIFERE 199 (312)
Q Consensus 183 ~q~v~~~l~~~a~~~~~ 199 (312)
+|.+|+++.........
T Consensus 281 ~q~vq~~la~~~~~~ea 297 (386)
T cd01151 281 FQLVQKKLADMLTEIAL 297 (386)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 99999998766665443
No 60
>PTZ00460 acyl-CoA dehydrogenase; Provisional
Probab=99.30 E-value=5.4e-12 Score=124.24 Aligned_cols=91 Identities=21% Similarity=0.314 Sum_probs=82.6
Q ss_pred CCCccCCcCCCcccEEEcceecCCCCcccc------CCc----c-HHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHH
Q psy10338 103 SEQNMGQRASDTRGITFEDVRVPKENVLLG------EGA----G-FKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYAL 171 (312)
Q Consensus 103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~------~g~----G-~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~ 171 (312)
..+++|+++.+++.+.||||+||.+++||. +|. | +......+..+|+.+++.++|.++++++.+++|++
T Consensus 221 ~~~k~G~~~~dng~l~Fd~VrVP~~nlLg~~~~v~~~G~~~~~g~~~~~~~~l~~~R~~iaa~~~g~a~~Al~iAvrYa~ 300 (646)
T PTZ00460 221 IGPKMGYAVKDNGFLSFDHYRIPLDSLLARYIKVSEDGQVERQGNPKVSYASMMYMRNLIIDQYPRFAAQALTVAIRYSI 300 (646)
T ss_pred cccccCcCCCCceEEEeceEEECHHHhCCcccccCCCCccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999999999999996 452 5 78888999999999999999999999999999999
Q ss_pred hhccCCC------CcccchhhHHHHHHh
Q psy10338 172 ERKAFGV------PIAAHQGMYLKIQYV 193 (312)
Q Consensus 172 ~R~~fg~------~l~~~q~v~~~l~~~ 193 (312)
+|+|||+ ||.++|.+|+++...
T Consensus 301 ~R~QFg~~~~~E~pI~~yQ~~Q~rLa~~ 328 (646)
T PTZ00460 301 YRQQFTNDNKQENSVLEYQTQQQKLLPL 328 (646)
T ss_pred ccccCCCCCCCCCcHhhhHHHHHHHHHH
Confidence 9999997 999999999996443
No 61
>cd01150 AXO Peroxisomal acyl-CoA oxidase. Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in the peroxisomal fatty acid beta-oxidation, the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. In a second oxidative half-reaction, the reduced FAD is reoxidized by molecular oxygen. AXO is generally a homodimer, but it has been reported to form a different type of oligomer in yeast. There are several subtypes of AXO's, based on substrate specificity. Palmitoyl-CoA oxidase acts on straight-chain fatty acids and prostanoids; whereas, the closely related Trihydroxycoprostanoly-CoA oxidase has the greatest activity for 2-methyl branched side chains of bile precursors. Pristanoyl-CoA oxidase, acts on 2-methyl branched fatty acids. AXO has an additional domain, C-terminal to the region with similarity to acyl-CoA dehydrogenases, which is included in this alignment.
Probab=99.29 E-value=3.5e-12 Score=125.40 Aligned_cols=89 Identities=22% Similarity=0.277 Sum_probs=83.3
Q ss_pred CCccCCcCCCcccEEEcceecCCCCcccc----------------CCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHH
Q psy10338 104 EQNMGQRASDTRGITFEDVRVPKENVLLG----------------EGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEAT 167 (312)
Q Consensus 104 ~~~~g~~~~~~~~v~f~dv~Vp~~~llG~----------------~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~ 167 (312)
.+++|+++.+++.+.||||+||.+++||. ++.|+..+...+..+|+.+++.++|.++++++.++
T Consensus 229 ~~k~G~~g~dng~l~Fd~vrVP~~nlL~~~~~v~~~G~~~~~~~~~~~g~~~~~~~~~~gRl~ia~~a~g~~~~al~iAi 308 (610)
T cd01150 229 GPKMGLNGVDNGFLQFRNVRIPRENLLNRFGDVSPDGTYVSPFKDPNKRYGAMLGTRSGGRVGLIYDAAMSLKKAATIAI 308 (610)
T ss_pred ccccCCCCCCeEEEEEeeeEecHHHhcccccccCCCCceecCCCchhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999986 67789999999999999999999999999999999
Q ss_pred HHHHhhccCCCC-------cccchhhHHHHHH
Q psy10338 168 KYALERKAFGVP-------IAAHQGMYLKIQY 192 (312)
Q Consensus 168 ~ya~~R~~fg~~-------l~~~q~v~~~l~~ 192 (312)
+|++.|+|||.+ |.++|.+|+++..
T Consensus 309 ~Ya~~R~qfg~~~~~~e~~I~~~q~~q~rL~~ 340 (610)
T cd01150 309 RYSAVRRQFGPKPSDPEVQILDYQLQQYRLFP 340 (610)
T ss_pred HHHHeeeecCCCCCCCcchhhccHhHHHHHHH
Confidence 999999999999 9999999999643
No 62
>KOG0138|consensus
Probab=99.29 E-value=1.8e-12 Score=111.96 Aligned_cols=104 Identities=34% Similarity=0.489 Sum_probs=92.9
Q ss_pred HHcCCccccCCCCCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHH
Q psy10338 91 HELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYA 170 (312)
Q Consensus 91 ~~~G~~~~~~P~~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya 170 (312)
-+.|.-|+.-|+...++++|.+.++.+.+|+|+||+|++|.... +|.-....|+..|+++++..+|+++.|++.+.+|+
T Consensus 234 ~~k~~~GL~apkI~gK~sLRas~tG~Ilmd~V~VPeE~~LPg~~-s~qgpf~cLnnaR~giAWg~lGase~c~~~arqY~ 312 (432)
T KOG0138|consen 234 LEKGMRGLSAPKIEGKFSLRASATGMILMDGVEVPEENLLPGAS-SLQGPFGCLNNARYGIAWGALGASEFCLHTARQYT 312 (432)
T ss_pred EecCCCCCcCCCcCCeeeeeecccCceeecCCcCChhhcCCCcc-ccCCchhhhhhhhhheeehhchhHHHHHHHHHHHH
Confidence 46788889999999999999999999999999999999996542 34445678999999999999999999999999999
Q ss_pred HhhccCCCCcccchhhHHHHHHhhh
Q psy10338 171 LERKAFGVPIAAHQGMYLKIQYVSI 195 (312)
Q Consensus 171 ~~R~~fg~~l~~~q~v~~~l~~~a~ 195 (312)
.+|+|||+|+..+|.+|.+++.+-.
T Consensus 313 ldRkQFG~PLAanQL~Q~Kladmlt 337 (432)
T KOG0138|consen 313 LDRKQFGRPLAANQLIQKKLADMLT 337 (432)
T ss_pred HHHHHhCCchhHHHHHHHHHHHHHH
Confidence 9999999999999999999776544
No 63
>PLN02876 acyl-CoA dehydrogenase
Probab=99.27 E-value=1.3e-11 Score=125.68 Aligned_cols=95 Identities=34% Similarity=0.475 Sum_probs=87.0
Q ss_pred CCCccCCcCC--CcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCc
Q psy10338 103 SEQNMGQRAS--DTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPI 180 (312)
Q Consensus 103 ~~~~~g~~~~--~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l 180 (312)
++.++|+++. .++++.|+||+||.++++|.+++|+..++..++.+|+.+++.++|+++++++.+++|+++|++||+++
T Consensus 633 ~~~~~G~r~~~~~~~~v~fd~V~Vp~~~~lg~~g~g~~~~~~~l~~~r~~~aa~~vG~a~~ale~a~~ya~~R~~fg~~i 712 (822)
T PLN02876 633 PLLVFGFDDAPHGHAEISFENVRVPAKNILLGEGRGFEIAQGRLGPGRLHHCMRLIGAAERGMQLMVQRALSRKAFGKLI 712 (822)
T ss_pred ccceeccCCCCCCeeEEEEcceeechhheecCCCchHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCch
Confidence 5677888874 47899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHHHhhhHH
Q psy10338 181 AAHQGMYLKIQYVSIFE 197 (312)
Q Consensus 181 ~~~q~v~~~l~~~a~~~ 197 (312)
.++|.+|++++......
T Consensus 713 ~~~q~vq~~la~~~~~l 729 (822)
T PLN02876 713 AQHGSFLSDLAKCRVEL 729 (822)
T ss_pred hhCHHHHHHHHHHHHHH
Confidence 99999999977665543
No 64
>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.
Probab=99.22 E-value=2.8e-11 Score=112.52 Aligned_cols=95 Identities=52% Similarity=0.737 Sum_probs=88.1
Q ss_pred CCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCccc
Q psy10338 103 SEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAA 182 (312)
Q Consensus 103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~ 182 (312)
.++.+|+++..++++.|+||+||+++++|..+.|+......++.+|+.+++.++|+++++++.+++|+++|.+|+.++.+
T Consensus 192 ~~~~~G~~g~~s~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r~~~~a~~lG~a~~~l~~~~~~~~~R~~~g~~~~~ 271 (373)
T cd01158 192 KEDKLGIRGSSTTELIFEDVRVPKENILGEEGEGFKIAMQTLDGGRIGIAAQALGIAQAALDAAVDYAKERKQFGKPIAD 271 (373)
T ss_pred cccccccCCCCceEEEeCcEEecHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCcHHH
Confidence 46778999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHhhhHH
Q psy10338 183 HQGMYLKIQYVSIFE 197 (312)
Q Consensus 183 ~q~v~~~l~~~a~~~ 197 (312)
+|.+|+++.......
T Consensus 272 ~~~v~~~la~~~~~l 286 (373)
T cd01158 272 FQGIQFKLADMATEI 286 (373)
T ss_pred hHHHHHHHHHHHHHH
Confidence 999999977655543
No 65
>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product. AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates.
Probab=99.21 E-value=4.2e-11 Score=113.08 Aligned_cols=93 Identities=27% Similarity=0.453 Sum_probs=85.7
Q ss_pred CCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCccc
Q psy10338 103 SEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAA 182 (312)
Q Consensus 103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~ 182 (312)
..+++|+++.++++|+|+||+ ++++|.+++||.+++..++.+|+.+++.++|.++++++.+++|+++|.+||+++.+
T Consensus 232 ~~~~~G~r~~~~~ev~f~dv~---~~~lG~~g~G~~~~~~~l~~~R~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~l~~ 308 (418)
T cd01154 232 LKDKLGTRSVATGEVEFDDAE---AYLIGDEGKGIYYILEMLNISRLDNAVAALGIMRRALSEAYHYARHRRAFGKPLID 308 (418)
T ss_pred cccccCCCCCCeEEEEecCcC---ccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCCchhh
Confidence 456889999999999999983 89999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHhhhHHH
Q psy10338 183 HQGMYLKIQYVSIFER 198 (312)
Q Consensus 183 ~q~v~~~l~~~a~~~~ 198 (312)
+|.+|++++.......
T Consensus 309 ~~~v~~~La~~~~~~e 324 (418)
T cd01154 309 HPLMRRDLAEMEVDVE 324 (418)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 9999999877665443
No 66
>KOG1469|consensus
Probab=99.21 E-value=6.1e-11 Score=101.17 Aligned_cols=103 Identities=22% Similarity=0.325 Sum_probs=77.8
Q ss_pred cccccccccc---ccCCCChhHhHHHHHHHHHHccCcchHH-----------------------------Hhhhccccee
Q psy10338 207 VHNCNVFLVS---VSGGLELSVFDGCLVAEELAYGCTGIMT-----------------------------ALEASGLGAY 254 (312)
Q Consensus 207 ~g~~~~~~p~---~~GG~g~~~~~~~~v~e~l~~~~~~~~~-----------------------------~~~g~~~~~~ 254 (312)
.|++.+.+|. .| |.|++..++..+.|.+++....--. ++.|...+||
T Consensus 39 eGlWNLFlp~~~qky-g~GLtnveYa~icElmGrs~~APeVfNC~APDTGNMEvl~rYGseeQks~WL~PLLeG~irScF 117 (392)
T KOG1469|consen 39 EGLWNLFLPAVSQKY-GAGLTNVEYAHICELMGRSFFAPEVFNCQAPDTGNMEVLHRYGSEEQKSQWLIPLLEGNIRSCF 117 (392)
T ss_pred cchHHhhhHHHHHhh-ccCccchhHHHHHHHhccccccchhccCCCCCCCCeeehhhhCCHHHHhhHhHHHhcCCceeeE
Confidence 4555555553 45 4799999999999999875422111 1115566799
Q ss_pred eecCCC-CCCCcCCceeEEEEeCCEEEEeeeeeeeeCCCc--ccEEEEEeccCCC-CCCC
Q psy10338 255 CVTEPG-AGSDVNGVKTKAVKKGDEWILNGQKMWITNGGV--ANWQNRTRDFRYE-KPGH 310 (312)
Q Consensus 255 a~tEp~-~gsd~~~~~t~A~~~~~g~~l~G~k~~vs~~~~--ad~~~v~~~~~~~-~~~~ 310 (312)
|+|||+ +.||..++.++-+++++.|+|||+|+|+||+.+ |.+.++..++++. .+.|
T Consensus 118 aMTEP~VASSDATNIe~SI~r~~~~YvINg~KWw~sga~~PkCrv~i~mGkt~~~~~~rh 177 (392)
T KOG1469|consen 118 AMTEPDVASSDATNIECSIRRDGDSYVINGKKWWISGAGDPKCRIAIFMGKTDNTSASRH 177 (392)
T ss_pred eecCCcccccccccceEEEEEcCCEEEEecceeeecCCCCCceEEEEEecccCCCccchh
Confidence 999998 678999999999999999999999999999955 6777777776655 4444
No 67
>PF02771 Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal domain; InterPro: IPR006092 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The N-terminal domain of Acyl-CoA dehydrogenase is an all-alpha domain, on dimerisation, the N-terminal of one molecule extends into the other dimer and lies on the surface of the molecule.; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 2WBI_B 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2DVL_A 1UKW_B 3MDD_B 1UDY_C 3MDE_B ....
Probab=99.20 E-value=3.8e-11 Score=92.22 Aligned_cols=52 Identities=38% Similarity=0.604 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHhhhhcccchhhhhhhcCCCCHHHHHHHHHcCCccccCCC
Q psy10338 51 NETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPA 102 (312)
Q Consensus 51 ~~~~~~l~~~~~~f~~~~~~p~~~~~d~~~~~p~~~~~~l~~~G~~~~~~P~ 102 (312)
|+++++|++.+++|+++++.|...++|+.+.+|+++|+++++.||+++.+|+
T Consensus 1 t~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~G~~~~~~p~ 52 (113)
T PF02771_consen 1 TEEQQALREEAREFAEEEIAPHAAEWDEDGRFPREVWRALGEAGLLGLAVPE 52 (113)
T ss_dssp SHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCHHHHHHHHHHTTTTSTTSCG
T ss_pred CHHHHHHHHHHHHHHHHHchHHHHHHHHhCCCCHHHHHHHHHHHHhhhhccc
Confidence 6899999999999999999999999988889999999999999999999997
No 68
>PLN02526 acyl-coenzyme A oxidase
Probab=99.19 E-value=4.7e-11 Score=112.60 Aligned_cols=93 Identities=30% Similarity=0.374 Sum_probs=84.3
Q ss_pred CCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCccc
Q psy10338 103 SEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAA 182 (312)
Q Consensus 103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~ 182 (312)
.++++|+++.+++++.|+||+||++++++..+ |+......++.+|+.+++..+|+++++++.+++|+++|.+||+++.+
T Consensus 218 ~~~~~G~r~t~s~~v~f~~v~Vp~~~~l~~~~-~~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~fg~~i~~ 296 (412)
T PLN02526 218 IENKIGLRMVQNGDIVLKDVFVPDEDRLPGVN-SFQDTNKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAA 296 (412)
T ss_pred CCCccCcCCCCeeEEEEeeEEECHHHhCCCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCCchhh
Confidence 45688999999999999999999999998764 78888888999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHhhhH
Q psy10338 183 HQGMYLKIQYVSIF 196 (312)
Q Consensus 183 ~q~v~~~l~~~a~~ 196 (312)
+|.+|+++......
T Consensus 297 ~q~vq~~la~~~~~ 310 (412)
T PLN02526 297 FQINQEKLVRMLGN 310 (412)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999997665443
No 69
>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit. Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=99.19 E-value=4.9e-11 Score=111.87 Aligned_cols=85 Identities=24% Similarity=0.328 Sum_probs=77.9
Q ss_pred CCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHH
Q psy10338 111 ASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKI 190 (312)
Q Consensus 111 ~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l 190 (312)
+.+++++.|+||+||.++++|.+++|+.+++..++.+|+++++ +|+++++++.+++|+++|++||+||.++|.+|+++
T Consensus 207 ~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~g~aa--~g~a~~~l~~a~~ya~~R~~fg~~i~~~q~vq~~l 284 (395)
T TIGR03204 207 GVEVNEVFFDDVEVPYENLVGEENKGWDYAKFLLGNERTGIAR--VGVSKERIRRIKDLAAKVESGGKPVIEDAKFREKL 284 (395)
T ss_pred CCceeEEEEcceEEcHHHcCCCCCchHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCccccCHHHHHHH
Confidence 5678899999999999999999999999999999999999886 79999999999999999999999999999999997
Q ss_pred HHhhhHH
Q psy10338 191 QYVSIFE 197 (312)
Q Consensus 191 ~~~a~~~ 197 (312)
+......
T Consensus 285 a~~~~~~ 291 (395)
T TIGR03204 285 AAVEIEL 291 (395)
T ss_pred HHHHHHH
Confidence 6655543
No 70
>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5. Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=99.15 E-value=1.6e-10 Score=108.89 Aligned_cols=93 Identities=25% Similarity=0.323 Sum_probs=84.1
Q ss_pred CCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCC---
Q psy10338 103 SEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVP--- 179 (312)
Q Consensus 103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~--- 179 (312)
.++++|+++.+++++.|+||+|| ++|.++.|+.+....++.+|+.+++.++|+++++++.+++|+++|.+||+|
T Consensus 207 ~~~~~G~r~t~s~~v~f~~v~Vp---~lg~~~~g~~~~~~~l~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~fg~~i~~ 283 (407)
T cd01153 207 IEEKMGLHGSPTCELVFDNAKGE---LIGEEGMGLAQMFAMMNGARLGVGTQGTGLAEAAYLNALAYAKERKQGGDLIKA 283 (407)
T ss_pred chhccCCCCCCeEEEEEcCEEEe---eeCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCCcCcc
Confidence 45788999999999999999999 899999999999999999999999999999999999999999999999999
Q ss_pred -----cccchhhHHHHHHhhhHHH
Q psy10338 180 -----IAAHQGMYLKIQYVSIFER 198 (312)
Q Consensus 180 -----l~~~q~v~~~l~~~a~~~~ 198 (312)
+.++|.+|+++........
T Consensus 284 ~~~~~~~~~~~iq~~la~~~a~~~ 307 (407)
T cd01153 284 APAVTIIHHPDVRRSLMTQKAYAE 307 (407)
T ss_pred ccccccccCHHHHHHHHHHHHHHH
Confidence 7777888888776666543
No 71
>PTZ00456 acyl-CoA dehydrogenase; Provisional
Probab=99.10 E-value=2.6e-10 Score=112.12 Aligned_cols=87 Identities=25% Similarity=0.364 Sum_probs=80.0
Q ss_pred CCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccC-------
Q psy10338 104 EQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAF------- 176 (312)
Q Consensus 104 ~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~f------- 176 (312)
.+++|+++.+++++.|+| +.+++||++++|+..++..++.+|+.+++.++|+++++++.+++|+++|.||
T Consensus 277 ~~kmG~~gs~t~~l~fd~---~~~~llG~~~~Gl~~~~~~mn~aRl~vaa~~lG~a~~Al~~Al~YAk~R~Qfr~~~~~~ 353 (622)
T PTZ00456 277 EKKMGIKGSSTCQLSFEN---SVGYLIGEPNAGMKQMFTFMNTARVGTALEGVCHAELAFQNALRYARERRSMRALSGTK 353 (622)
T ss_pred ccccCCCCCceEEEEeeC---hhHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccc
Confidence 367899999999999998 4689999999999999999999999999999999999999999999999984
Q ss_pred -----CCCcccchhhHHHHHHh
Q psy10338 177 -----GVPIAAHQGMYLKIQYV 193 (312)
Q Consensus 177 -----g~~l~~~q~v~~~l~~~ 193 (312)
+++|+++|.||+++...
T Consensus 354 ~~~~~~~~I~~~~~Vr~~L~~~ 375 (622)
T PTZ00456 354 EPEKPADRIICHANVRQNILFA 375 (622)
T ss_pred cccCCCCccccCHHHHHHHHHH
Confidence 78999999999996443
No 72
>PRK11561 isovaleryl CoA dehydrogenase; Provisional
Probab=99.03 E-value=1.1e-09 Score=105.50 Aligned_cols=53 Identities=23% Similarity=0.213 Sum_probs=47.7
Q ss_pred cceeeecCCCCCCCcCCceeEEEE-eCCEEEEeeeeeeeeCCCcccEEEEEeccC
Q psy10338 251 LGAYCVTEPGAGSDVNGVKTKAVK-KGDEWILNGQKMWITNGGVANWQNRTRDFR 304 (312)
Q Consensus 251 ~~~~a~tEp~~gsd~~~~~t~A~~-~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~ 304 (312)
+.++++|||++|||+.+++|+|++ ++|+|+|||+|+||| +..||+++|+++++
T Consensus 179 ~~~~a~TEp~~GSDv~~~~T~A~~~~gg~w~LnG~K~fiS-a~~AD~~lVlArt~ 232 (538)
T PRK11561 179 LIGMGMTEKQGGSDVLSNTTRAERLADGSYRLVGHKWFFS-VPQSDAHLVLAQAK 232 (538)
T ss_pred eeEEEecCCCCCCchhhCeeEEEECCCCeEEEEEEEEEEE-chhhCEEEEEEEEC
Confidence 458999999999999999999999 467899999999999 68999999997653
No 73
>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C. DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.
Probab=99.02 E-value=5.7e-10 Score=104.04 Aligned_cols=94 Identities=21% Similarity=0.202 Sum_probs=80.2
Q ss_pred CCCccCCcCCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhc-cCCC---
Q psy10338 103 SEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERK-AFGV--- 178 (312)
Q Consensus 103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~-~fg~--- 178 (312)
.++++|+++.+++++.|+||+||+++++|.++.|+. ....+...|+.+++.++|+++++++.+++|+++|. +|++
T Consensus 177 ~~~~~G~~~~~s~~v~f~~v~Vp~~~~lg~~~~g~~-~~~~~~~~~l~~aa~~lG~a~~al~~~~~~~~~R~~~~g~~~~ 255 (377)
T cd01163 177 DWDGFGQRLTASGTVTFDNVRVEPDEVLPRPNAPDR-GTLLTAIYQLVLAAVLAGIARAALDDAVAYVRSRTRPWIHSGA 255 (377)
T ss_pred CcccccCccCCcceEEEeeEEECHHHccCCCccccc-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCCc
Confidence 467889999999999999999999999999988875 23344567889999999999999999999999995 7876
Q ss_pred -CcccchhhHHHHHHhhhHH
Q psy10338 179 -PIAAHQGMYLKIQYVSIFE 197 (312)
Q Consensus 179 -~l~~~q~v~~~l~~~a~~~ 197 (312)
++.++|.+|+++.......
T Consensus 256 ~~~~~~~~v~~~la~~~~~l 275 (377)
T cd01163 256 ESARDDPYVQQVVGDLAARL 275 (377)
T ss_pred cccccCcHHHHHHHHHHHHH
Confidence 5789999999977665543
No 74
>PLN02443 acyl-coenzyme A oxidase
Probab=98.98 E-value=1.1e-09 Score=108.35 Aligned_cols=84 Identities=24% Similarity=0.362 Sum_probs=70.6
Q ss_pred CCCccC---CcCCCcccEEEcceecCCCCccccC------CccH------HHHHhhhhccChhHHHHHHHHHHHHHHHHH
Q psy10338 103 SEQNMG---QRASDTRGITFEDVRVPKENVLLGE------GAGF------KIAMDTFDKTRPPVAAGAVGLAQRCLDEAT 167 (312)
Q Consensus 103 ~~~~~g---~~~~~~~~v~f~dv~Vp~~~llG~~------g~G~------~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~ 167 (312)
..+++| .++.+++.+.|+||+||.+++||.. |..+ ......+..+|+.+++.++|.++++++.++
T Consensus 225 ~g~K~G~~~~~~~dng~l~Fd~VrVP~~nlLg~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~i~a~a~g~~~~Al~iAv 304 (664)
T PLN02443 225 IGMKFGNGAYNTMDNGFLRFDHVRIPRDQMLMRLSKVTREGKYVQSDVPRQLVYGTMVYVRQTIVADASTALSRAVCIAT 304 (664)
T ss_pred cccccCcccCCCCcceEEEeCcEEECHHHcCCcccccCCCCceecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778 5568899999999999999999864 3322 244567888999999999999999999999
Q ss_pred HHHHhhccCCCCcc--cchhh
Q psy10338 168 KYALERKAFGVPIA--AHQGM 186 (312)
Q Consensus 168 ~ya~~R~~fg~~l~--~~q~v 186 (312)
+|+.+|+|||.|++ ++|.+
T Consensus 305 rYa~~R~QFg~~~~~~e~qii 325 (664)
T PLN02443 305 RYSAVRRQFGSQDGGPETQVI 325 (664)
T ss_pred HHHHccEeCCCCCCccchhhh
Confidence 99999999999987 66666
No 75
>cd00567 ACAD Acyl-CoA dehydrogenase. Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isob
Probab=98.96 E-value=1.9e-09 Score=98.31 Aligned_cols=58 Identities=41% Similarity=0.722 Sum_probs=53.4
Q ss_pred hhcccceeeecCCCCCCCcCCceeEEEEeCCEEEEeeeeeeeeCCCcccEEEEEeccC
Q psy10338 247 EASGLGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFR 304 (312)
Q Consensus 247 ~g~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~ 304 (312)
.+..+.++++|||++|||...+.+++++++|||+|||+|.|+|++.+|||++|+....
T Consensus 66 ~g~~~~~~a~sE~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~lv~a~~~ 123 (327)
T cd00567 66 SGEAIAAFALTEPGAGSDLAGIRTTARKDGDGYVLNGRKIFISNGGDADLFIVLARTD 123 (327)
T ss_pred CCCceEEEEecCCCCCCchhhCEeEEEEeCCEEEEEEEEEEecCCccCCEEEEEEEeC
Confidence 4677889999999999999999999999999999999999999999999999986544
No 76
>cd01150 AXO Peroxisomal acyl-CoA oxidase. Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in the peroxisomal fatty acid beta-oxidation, the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. In a second oxidative half-reaction, the reduced FAD is reoxidized by molecular oxygen. AXO is generally a homodimer, but it has been reported to form a different type of oligomer in yeast. There are several subtypes of AXO's, based on substrate specificity. Palmitoyl-CoA oxidase acts on straight-chain fatty acids and prostanoids; whereas, the closely related Trihydroxycoprostanoly-CoA oxidase has the greatest activity for 2-methyl branched side chains of bile precursors. Pristanoyl-CoA oxidase, acts on 2-methyl branched fatty acids. AXO has an additional domain, C-terminal to the region with similarity to acyl-CoA dehydrogenases, which is included in this alignment.
Probab=98.95 E-value=1.5e-09 Score=106.81 Aligned_cols=58 Identities=28% Similarity=0.436 Sum_probs=52.2
Q ss_pred hhhcccceeeecCCCCCCCcCCceeEEEEeC--CEEEEe-----eeeeeeeCCC-cccEEEEEecc
Q psy10338 246 LEASGLGAYCVTEPGAGSDVNGVKTKAVKKG--DEWILN-----GQKMWITNGG-VANWQNRTRDF 303 (312)
Q Consensus 246 ~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~~--~g~~l~-----G~k~~vs~~~-~ad~~~v~~~~ 303 (312)
..++.++|+++|||++|||+.+++|+|++++ ++|+|| |+|+|++|+. .|++++|++.+
T Consensus 130 ~~g~~ig~~a~TE~ghGSdv~~leTtAt~d~~t~efvLntp~~~g~K~wi~~~~~~a~~~vV~Arl 195 (610)
T cd01150 130 NNLEIIGCFAQTELGHGSNLQGLETTATYDPLTQEFVINTPDFTATKWWPGNLGKTATHAVVFAQL 195 (610)
T ss_pred hccChheeeeccccCcCcCcccceeEEEECCCCCeEEECCCCCCceEECccCcccCCCEEEEEEEe
Confidence 3477789999999999999999999999998 899999 9999999985 49999999764
No 77
>cd01159 NcnH Naphthocyclinone hydroxylase. Naphthocyclinone is an aromatic polyketide and an antibiotic, which is active against Gram-positive bacteria. Polyketides are secondary metabolites, which have important biological functions such as antitumor, immunosupressive or antibiotic activities. NcnH is a hydroxylase involved in the biosynthesis of naphthocyclinone and possibly other polyketides.
Probab=98.94 E-value=1.2e-09 Score=101.61 Aligned_cols=97 Identities=21% Similarity=0.166 Sum_probs=80.2
Q ss_pred CCCCccCCcCCCcccEEEcceecCCCCccccCC------ccHH---HHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHh
Q psy10338 102 ASEQNMGQRASDTRGITFEDVRVPKENVLLGEG------AGFK---IAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALE 172 (312)
Q Consensus 102 ~~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g------~G~~---~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~ 172 (312)
..+..+|+++..++++.|+||+||++++|+.++ .|+. +.+......|+.+++.++|+++++++.+++|+++
T Consensus 167 ~~~~~~G~r~~~s~~v~f~~v~Vp~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~aa~~lG~a~~~l~~~~~~~~~ 246 (370)
T cd01159 167 DTWHVVGLRGTGSNTVVVDDVFVPEHRTLTAGDMMAGDGPGGSTPVYRMPLRQVFPLSFAAVSLGAAEGALAEFLELAGK 246 (370)
T ss_pred cccccccccccCCCcEEEcceEcCccceecccccccCCCCCCCCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 357899999999999999999999999998653 2321 2233455678999999999999999999999999
Q ss_pred hccC---CCCcccchhhHHHHHHhhhHHH
Q psy10338 173 RKAF---GVPIAAHQGMYLKIQYVSIFER 198 (312)
Q Consensus 173 R~~f---g~~l~~~q~v~~~l~~~a~~~~ 198 (312)
|.+| ++++.++|.+|+++........
T Consensus 247 R~~~~~~g~~i~~~~~v~~~la~~~~~l~ 275 (370)
T cd01159 247 RVRQYGAAVKMAEAPITQLRLAEAAAELD 275 (370)
T ss_pred CcccCCCccccccCHHHHHHHHHHHHHHH
Confidence 9987 6789999999999766655443
No 78
>PTZ00460 acyl-CoA dehydrogenase; Provisional
Probab=98.94 E-value=1.8e-09 Score=106.52 Aligned_cols=60 Identities=28% Similarity=0.451 Sum_probs=53.8
Q ss_pred HhhhcccceeeecCCCCCCCcCCceeEEEEe--CCEEEEe-----eeeeeeeC-CCcccEEEEEeccC
Q psy10338 245 ALEASGLGAYCVTEPGAGSDVNGVKTKAVKK--GDEWILN-----GQKMWITN-GGVANWQNRTRDFR 304 (312)
Q Consensus 245 ~~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~--~~g~~l~-----G~k~~vs~-~~~ad~~~v~~~~~ 304 (312)
+..|+.++|+++|||++|||+.+++|+|+++ +|+|+|| |+|+||+| +..||+++|++.+.
T Consensus 122 ~~~ge~ig~~A~TEpghGSdv~~leTtAt~d~~~defvLntPt~~g~K~wi~~~g~~A~~~vV~Arl~ 189 (646)
T PTZ00460 122 LLNFEIVGCYAQTELGHGSDVQNLETTATYDKQTNEFVIHTPSVEAVKFWPGELGFLCNFALVYAKLI 189 (646)
T ss_pred HhCCChheeeeecCCCccCCcccceEEEEEcCCCCEEEECCCCCCeEEEccCCCCCCCCEEEEEEEEC
Confidence 4467889999999999999999999999985 6799998 99999998 68999999997654
No 79
>KOG1469|consensus
Probab=98.87 E-value=2.2e-09 Score=91.75 Aligned_cols=80 Identities=39% Similarity=0.544 Sum_probs=75.4
Q ss_pred cccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHh
Q psy10338 114 TRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYV 193 (312)
Q Consensus 114 ~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~ 193 (312)
..++.|++|+||..|++=.+|.||.+.+..|..+|+..|...+|.++++++...+.+.+|..||+++..+..+.+-++..
T Consensus 210 H~Ei~F~~VrVP~~NmlLGeGrGFEIaQGRLGPGRiHHcMRliG~aERal~lm~~R~~sRiaFgk~l~q~~s~~~diA~s 289 (392)
T KOG1469|consen 210 HFEIHFENVRVPATNMLLGEGRGFEIAQGRLGPGRIHHCMRLIGLAERALQLMKERALSRIAFGKKLVQHGSVAHDIAES 289 (392)
T ss_pred cceEEEEEEEeeccceeecCCCcceeeccccCCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhhcchHHHHHHHH
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999988775543
No 80
>PLN02443 acyl-coenzyme A oxidase
Probab=98.81 E-value=9.8e-09 Score=101.59 Aligned_cols=60 Identities=28% Similarity=0.415 Sum_probs=53.5
Q ss_pred HhhhcccceeeecCCCCCCCcCCceeEEEEe--CCEEEEe-----eeeeeeeCC-CcccEEEEEeccC
Q psy10338 245 ALEASGLGAYCVTEPGAGSDVNGVKTKAVKK--GDEWILN-----GQKMWITNG-GVANWQNRTRDFR 304 (312)
Q Consensus 245 ~~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~--~~g~~l~-----G~k~~vs~~-~~ad~~~v~~~~~ 304 (312)
+..++.++|+++|||++|||+.+++|+|+.+ +++|+|| |+|+|++|+ ..||+++|++.+.
T Consensus 126 ~~~g~iig~fA~TE~ghGSdv~~leTtAt~d~~~~efvIntP~~~g~K~wig~~~~~A~~~vV~Arl~ 193 (664)
T PLN02443 126 AYKMQIIGCYAQTELGHGSNVQGLETTATFDPKTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLI 193 (664)
T ss_pred HhCCChheEEEecCCCcccchhhCeEEEEEeCCCCEEEECCCCCCEEEEeecCCcccCCEEEEEEEEC
Confidence 4457889999999999999999999999998 6899998 999999997 7899999996643
No 81
>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=98.76 E-value=2.2e-08 Score=93.52 Aligned_cols=86 Identities=19% Similarity=0.224 Sum_probs=73.1
Q ss_pred CCCcccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHH
Q psy10338 111 ASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKI 190 (312)
Q Consensus 111 ~~~~~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l 190 (312)
+..++++.|+||+||.++++|.++.|+..+...++..|+.+++. +..+++.+++|+++|.+||+|+.++|.+|+++
T Consensus 203 ~~~~~~l~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~~~~~~----~~~~~~~a~~~a~~r~~~g~~l~~~~~vq~~l 278 (380)
T cd01152 203 GEFFNEVFLDDVRVPDANRVGEVNDGWKVAMTTLNFERVSIGGS----AATFFELLLARLLLLTRDGRPLIDDPLVRQRL 278 (380)
T ss_pred CCCcceEEecCcCcchhcccCCCCchHHHHHHHHHhcccccchh----hhHHHHHHHHHHHHHHhcCCCcccCHHHHHHH
Confidence 56789999999999999999999999999999999999887654 44555677889999999999999999999998
Q ss_pred HHhhhHHHHH
Q psy10338 191 QYVSIFEREI 200 (312)
Q Consensus 191 ~~~a~~~~~~ 200 (312)
+.........
T Consensus 279 a~~~~~l~~a 288 (380)
T cd01152 279 ARLEAEAEAL 288 (380)
T ss_pred HHHHHHHHHH
Confidence 8776654443
No 82
>PTZ00457 acyl-CoA dehydrogenase; Provisional
Probab=98.50 E-value=2.1e-07 Score=89.39 Aligned_cols=72 Identities=24% Similarity=0.265 Sum_probs=64.9
Q ss_pred ccEEEcceecCCCCccccCCccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhh
Q psy10338 115 RGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVS 194 (312)
Q Consensus 115 ~~v~f~dv~Vp~~~llG~~g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a 194 (312)
++|+|||| |.+++||.+|.||++++..++.+|+.+++.++|+++++++.+++|++ +|.||++++...
T Consensus 219 ~eV~FddV--P~~~vLG~~g~G~~~a~~~L~~~Rl~~aA~~vGia~~ale~av~ya~-----------~QaVq~~LAdma 285 (520)
T PTZ00457 219 DSVVFENT--PAADVVGVVGEGFKDAMITLFTEQYLYAASLLGIMKRVVQELRGSNA-----------EEGATDTVASFA 285 (520)
T ss_pred CEEEECCC--CHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hhHHHHHHHHHH
Confidence 79999997 99999999999999999999999999999999999999999999986 378999977766
Q ss_pred hHHHH
Q psy10338 195 IFERE 199 (312)
Q Consensus 195 ~~~~~ 199 (312)
.....
T Consensus 286 ~~ieA 290 (520)
T PTZ00457 286 CAMYA 290 (520)
T ss_pred HHHHH
Confidence 65433
No 83
>KOG0135|consensus
Probab=98.47 E-value=1.8e-07 Score=87.43 Aligned_cols=88 Identities=27% Similarity=0.493 Sum_probs=76.9
Q ss_pred CCCccCCcCCCcccEEEcceecCCCCccccCC----------------ccHHHHHhhhhccChhHHHHHHHHHHHHHHHH
Q psy10338 103 SEQNMGQRASDTRGITFEDVRVPKENVLLGEG----------------AGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEA 166 (312)
Q Consensus 103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~g----------------~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a 166 (312)
.-.|+|+.|.+++-+.|++||||.+|+|...+ +-|......|..+|++++..++|.+.-++.+|
T Consensus 250 ~G~K~GlnGVDNG~l~F~nvRIPRenLLNr~gDVtpDG~YvSs~k~~~qrfgA~L~~Ls~GRvgIa~~ai~~lkla~tIA 329 (661)
T KOG0135|consen 250 CGHKIGLNGVDNGFLWFDNVRIPRENLLNRFGDVTPDGKYVSSFKDPSQRFGASLGSLSSGRVGIASSAIGALKLALTIA 329 (661)
T ss_pred cccccccccccCceEEEecccCchHHHhhhccCcCCCCeeeccCCChhhhhchhhcccccchhHHHHHHHHHHHHHHHHh
Confidence 45688999999999999999999999986532 34666778899999999999999999999999
Q ss_pred HHHHHhhccCCC-------CcccchhhHHHH
Q psy10338 167 TKYALERKAFGV-------PIAAHQGMYLKI 190 (312)
Q Consensus 167 ~~ya~~R~~fg~-------~l~~~q~v~~~l 190 (312)
++|...|+|||. ++.++|.-|+||
T Consensus 330 IRYS~sRRQFGP~~~geEv~iLeYp~qQ~RL 360 (661)
T KOG0135|consen 330 IRYSLSRRQFGPTKNGEEVPILEYPSQQYRL 360 (661)
T ss_pred hhhHHhHhhhCCCCCCCcceeeechhHHHHH
Confidence 999999999995 667888888883
No 84
>PF00441 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006090 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0055114 oxidation-reduction process; PDB: 2EBA_A 1RX0_C 1R2J_A 2OKU_A 3MKH_C 2JIF_C 3GQT_D 3EON_D 3EOM_C 3D6B_A ....
Probab=98.37 E-value=1.1e-06 Score=70.57 Aligned_cols=65 Identities=37% Similarity=0.625 Sum_probs=60.1
Q ss_pred CccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhHHHHHHhhhHHH
Q psy10338 134 GAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFER 198 (312)
Q Consensus 134 g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~~~l~~~a~~~~ 198 (312)
|+||.++.+.+..+|+.+++.++|.++.+++.+.+|+++|.+||+++.++|.++.++........
T Consensus 1 g~G~~~~~~~l~~~R~~~~~~~~g~~~~~l~~a~~~~~~r~~~g~~l~~~~~v~~~la~~~~~~~ 65 (150)
T PF00441_consen 1 GQGWAVALDTLNHERLMIAAMALGIARRALDEAIEYARRRRQFGKPLAEHPAVRRRLADMAARLE 65 (150)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTEETTEEGGGSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccchhhhHHHHHhhccchh
Confidence 68999999999999999999999999999999999999999999999999999999776655443
No 85
>TIGR02309 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Deinococcus, Thermus and Oceanobacillus. Phylogenetic trees support inclusion of the Bacillus halodurans sequence above trusted although the complete 4-hydroxyphenylacetic acid degradation pathway may not exist in that organism. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=98.19 E-value=4.3e-06 Score=80.00 Aligned_cols=85 Identities=19% Similarity=0.155 Sum_probs=73.4
Q ss_pred CcccEEEcceecCCCCc--cccC---CccHHHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccchhhH
Q psy10338 113 DTRGITFEDVRVPKENV--LLGE---GAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMY 187 (312)
Q Consensus 113 ~~~~v~f~dv~Vp~~~l--lG~~---g~G~~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~q~v~ 187 (312)
..+.|+||||+||.|++ +|.+ +.||...... +..+...+|....++|.++.|++. .+|+.++.++|.||
T Consensus 251 ~da~vvFDdV~VPwe~VF~~g~~e~a~~~f~~~~~~-----~~~~~~~~g~~~~~ld~~~g~a~~-~a~~~gi~~~q~VQ 324 (477)
T TIGR02309 251 MDALVIFDDVLVPWERIFILGDVELCNNAYAATGAV-----NHMAHQVVALKIAKTEAFLGVAAL-MAEGIGADGFQHVQ 324 (477)
T ss_pred CeEEEEeCceeccHHHhhhcCCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH-HHHhhCcccchHHH
Confidence 56899999999999999 9998 8888665443 666899999999999999999999 99999999999999
Q ss_pred HHHHHhhhHHHHHHHH
Q psy10338 188 LKIQYVSIFEREIQLM 203 (312)
Q Consensus 188 ~~l~~~a~~~~~~~~~ 203 (312)
++++.........+..
T Consensus 325 ~kLAEm~~~~Ea~ral 340 (477)
T TIGR02309 325 EKIAEIIVYLEAMKAF 340 (477)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9998877776555443
No 86
>KOG0135|consensus
Probab=97.05 E-value=0.00097 Score=63.07 Aligned_cols=76 Identities=25% Similarity=0.359 Sum_probs=60.4
Q ss_pred HHHHHHHHHHccCcchHHHhh---------------------------hcccceeeecCCCCCCCcCCceeEEEEe--CC
Q psy10338 227 DGCLVAEELAYGCTGIMTALE---------------------------ASGLGAYCVTEPGAGSDVNGVKTKAVKK--GD 277 (312)
Q Consensus 227 ~~~~v~e~l~~~~~~~~~~~~---------------------------g~~~~~~a~tEp~~gsd~~~~~t~A~~~--~~ 277 (312)
-...+.|.++..+.|++.-+. .+..+|||+||-++||+..+++|+|+-+ .+
T Consensus 106 k~~al~E~lg~yd~sls~K~~lh~~lfg~AV~~~GT~rH~~yi~~~~n~ev~gcfamTEl~HGSNt~~I~TtatyDP~t~ 185 (661)
T KOG0135|consen 106 KKFALTEALGIYDQSLSAKLGLHFLLFGNAVKSMGTKRHHDYIQKTENYEVKGCFAMTELGHGSNTKGIQTTATYDPTTE 185 (661)
T ss_pred HHHHHHHHHhhcCcchhhhhhhhhhhhhHHHHhhccHHHHHHHhhhhcceeeeeEEEeeecCCccccceeeeeeecCCCC
Confidence 456778888888888763221 2235699999999999999999999988 57
Q ss_pred EEEEe-----eeeeeeeCC-CcccEEEEEec
Q psy10338 278 EWILN-----GQKMWITNG-GVANWQNRTRD 302 (312)
Q Consensus 278 g~~l~-----G~k~~vs~~-~~ad~~~v~~~ 302 (312)
.|+|| -.|.||.|+ .+|.+.+|++.
T Consensus 186 EfVinTP~~~A~K~WiGn~a~~athavvfa~ 216 (661)
T KOG0135|consen 186 EFVINTPDFSAIKCWIGNAAKHATHAVVFAQ 216 (661)
T ss_pred eeEecCCcHHHHHHHhccccccceEEEEEEE
Confidence 89996 569999996 56888888854
No 87
>TIGR02309 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Deinococcus, Thermus and Oceanobacillus. Phylogenetic trees support inclusion of the Bacillus halodurans sequence above trusted although the complete 4-hydroxyphenylacetic acid degradation pathway may not exist in that organism. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=96.07 E-value=0.0048 Score=59.25 Aligned_cols=32 Identities=16% Similarity=-0.005 Sum_probs=27.7
Q ss_pred EEEeCCEEEEeeeeeeeeCCCcccEEEEEeccC
Q psy10338 272 AVKKGDEWILNGQKMWITNGGVANWQNRTRDFR 304 (312)
Q Consensus 272 A~~~~~g~~l~G~k~~vs~~~~ad~~~v~~~~~ 304 (312)
.++++|||+|||.|.|+|++ .||+++|...+.
T Consensus 171 ve~~~dGiVV~GaK~~~T~~-~ad~~~V~~~~~ 202 (477)
T TIGR02309 171 VEQTDKGVIVRGARMTATFP-IADEILIFPSTV 202 (477)
T ss_pred EEEcCCCEEEeCHHHhhhhc-ccceEEEeccCC
Confidence 46678899999999999997 999999995543
No 88
>KOG0136|consensus
Probab=95.48 E-value=0.024 Score=55.00 Aligned_cols=87 Identities=22% Similarity=0.333 Sum_probs=66.7
Q ss_pred CCCccCCcCCCcccEEEcceecCCCCccccC----Ccc--H-----HHHHhhhhccChhHHHHHHHHHHHHHHHHHHHHH
Q psy10338 103 SEQNMGQRASDTRGITFEDVRVPKENVLLGE----GAG--F-----KIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYAL 171 (312)
Q Consensus 103 ~~~~~g~~~~~~~~v~f~dv~Vp~~~llG~~----g~G--~-----~~~~~~l~~~R~~~aa~~~G~~~~~l~~a~~ya~ 171 (312)
.-.++|..+.+++-+-|+|||||.+|+|-.- ..| . ...-..+...|..++....-....+..+|++|+.
T Consensus 237 IG~Kmg~ng~dNGfL~f~nvRIPR~nmLmr~~kV~~dGtyv~p~~~~l~Y~tMv~vRs~mv~d~a~~La~A~tIAtRYSa 316 (670)
T KOG0136|consen 237 IGPKMGFNGVDNGFLGFDNVRIPRTNMLMRHAKVEPDGTYVKPPHPKLGYGTMVYVRSLMVMDQARFLAKAATIATRYSA 316 (670)
T ss_pred CCccccccCCccceeeecceeechHhhhhhhheecCCCccccCCccccceeeeEEEeehhHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999999999998542 222 1 1222345556777777777777888899999999
Q ss_pred hhccCCC-------CcccchhhHHH
Q psy10338 172 ERKAFGV-------PIAAHQGMYLK 189 (312)
Q Consensus 172 ~R~~fg~-------~l~~~q~v~~~ 189 (312)
-|+|+.. .+.|+|.-|.|
T Consensus 317 VRRQ~~i~pg~~E~qIlDyqTQQ~r 341 (670)
T KOG0136|consen 317 VRRQSEIRPGQPEVQILDYQTQQYR 341 (670)
T ss_pred HhhccCCCCCCCCceeeechhHHHH
Confidence 9999963 67888888887
No 89
>PF00441 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006090 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0055114 oxidation-reduction process; PDB: 2EBA_A 1RX0_C 1R2J_A 2OKU_A 3MKH_C 2JIF_C 3GQT_D 3EON_D 3EOM_C 3D6B_A ....
Probab=94.63 E-value=0.009 Score=47.60 Aligned_cols=43 Identities=49% Similarity=0.778 Sum_probs=39.2
Q ss_pred CcccCCChhhhhhhhhhHHHHHHHHHHHHHHhhhcCccccccc
Q psy10338 2 DTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQ 44 (312)
Q Consensus 2 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~ 44 (312)
+.|+.+|+.+++..+|..+.+++.+.+|++.|++||+|+..++
T Consensus 9 ~~l~~~R~~~~~~~~g~~~~~l~~a~~~~~~r~~~g~~l~~~~ 51 (150)
T PF00441_consen 9 DTLNHERLMIAAMALGIARRALDEAIEYARRRRQFGKPLAEHP 51 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTEETTEEGGGSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccchh
Confidence 4567789999999999999999999999999999999988754
No 90
>PF08028 Acyl-CoA_dh_2: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR013107 Acyl Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3AFE_C 3AFF_A 2JBT_D 2JBS_C 2JBR_B 2RFQ_B 2OR0_B.
Probab=94.30 E-value=0.23 Score=38.93 Aligned_cols=49 Identities=24% Similarity=0.242 Sum_probs=41.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcc--CCCCcccchhhHHHHHHhhhHH
Q psy10338 149 PPVAAGAVGLAQRCLDEATKYALERKA--FGVPIAAHQGMYLKIQYVSIFE 197 (312)
Q Consensus 149 ~~~aa~~~G~~~~~l~~a~~ya~~R~~--fg~~l~~~q~v~~~l~~~a~~~ 197 (312)
+.+++..+|+++++++..++|++.|.. .+.+..+.+.+|.++.......
T Consensus 1 L~~aa~~lG~A~~al~~~~~~~~~r~~~~~~~~~~~~p~~q~~lgea~~~~ 51 (134)
T PF08028_consen 1 LSFAAVYLGIARGALDEFVEYLRGRVRASGGAPLADDPYIQARLGEAAARL 51 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSBCCC-HHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCchhcCHHHHHHHHHHHHHH
Confidence 467889999999999999999999987 7789999999999976655543
No 91
>KOG0136|consensus
Probab=87.03 E-value=0.54 Score=45.96 Aligned_cols=54 Identities=26% Similarity=0.413 Sum_probs=44.5
Q ss_pred hcccceeeecCCCCCCCcCCceeEEEEeCC--EEEE-----eeeeeeeeCC-CcccEEEEEe
Q psy10338 248 ASGLGAYCVTEPGAGSDVNGVKTKAVKKGD--EWIL-----NGQKMWITNG-GVANWQNRTR 301 (312)
Q Consensus 248 g~~~~~~a~tEp~~gsd~~~~~t~A~~~~~--g~~l-----~G~k~~vs~~-~~ad~~~v~~ 301 (312)
.+.++|+|-||-++|+++..+.|+|+-+.. .|+| +..|+|..+- ..|++.+|.+
T Consensus 141 ~~IiGtYAQTElGHGTnl~~LET~AtyD~~T~eFVl~TPt~ta~KWWPGgLG~ssnhAvV~A 202 (670)
T KOG0136|consen 141 MEIIGTYAQTELGHGTNLRGLETTATYDPKTQEFVLNTPTLTATKWWPGGLGKSSNHAVVVA 202 (670)
T ss_pred ceEEEeehhhhhcccccccccceeeeecCCcceEEecCCCcceecccCCccccccchheeee
Confidence 567899999999999999999999998754 7877 6889998874 5577777664
No 92
>PF11794 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N terminal; InterPro: IPR024674 This domain is found in the N terminus of HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. The domain is also found in pyoverdin chromophore biosynthetic protein (PvcC), which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=82.55 E-value=3.5 Score=36.46 Aligned_cols=50 Identities=20% Similarity=0.167 Sum_probs=31.7
Q ss_pred cceeeecCCCCC-C-Cc----CCceeE-EEEeCCEEEEeeeeeeeeCCCcccEEEEE
Q psy10338 251 LGAYCVTEPGAG-S-DV----NGVKTK-AVKKGDEWILNGQKMWITNGGVANWQNRT 300 (312)
Q Consensus 251 ~~~~a~tEp~~g-s-d~----~~~~t~-A~~~~~g~~l~G~k~~vs~~~~ad~~~v~ 300 (312)
..+.+++.|..- | .+ ..+-.+ .+++++|.+|+|.|...|++..+|.++|+
T Consensus 138 ~~t~a~~dPq~DRs~~~~q~d~d~~lrVVee~~dGIvVrGAK~~~T~a~~adei~V~ 194 (264)
T PF11794_consen 138 FLTHAITDPQGDRSKPPHQEDPDVYLRVVEETDDGIVVRGAKMLATGAPYADEILVF 194 (264)
T ss_dssp -EEEEES--SSSTTSTGGSSSCCSB-EEEEE-SSEEEEEEEEEEEETGCCSSEEEE-
T ss_pred EeeeeeeCCCcCCCCCccccCCCceEEEEEEcCCCEEEeChhhhhcCCcccccEEEe
Confidence 446778887521 1 11 112233 35568899999999999999999999998
No 93
>PF08028 Acyl-CoA_dh_2: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR013107 Acyl Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3AFE_C 3AFF_A 2JBT_D 2JBS_C 2JBR_B 2RFQ_B 2OR0_B.
Probab=78.74 E-value=3.4 Score=32.15 Aligned_cols=27 Identities=33% Similarity=0.363 Sum_probs=24.3
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHhhh
Q psy10338 9 PPVAAGAVGLAQRCLDEATKYALERKA 35 (312)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~~~~~~~~ 35 (312)
+.+++-.+|..+.+++...++.+.|..
T Consensus 1 L~~aa~~lG~A~~al~~~~~~~~~r~~ 27 (134)
T PF08028_consen 1 LSFAAVYLGIARGALDEFVEYLRGRVR 27 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 357888999999999999999998888
No 94
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=60.54 E-value=20 Score=24.27 Aligned_cols=49 Identities=24% Similarity=0.281 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHHHHHhhhhc-ccchhhhhhhcCCCC-----HHHHHHHHHcCCcc
Q psy10338 49 ELNETQQEFQALARKFCREE-IIPVAAEHDRTGEYP-----WGIVKKAHELGLIN 97 (312)
Q Consensus 49 ~l~~~~~~l~~~~~~f~~~~-~~p~~~~~d~~~~~p-----~~~~~~l~~~G~~~ 97 (312)
.||+.|+.+.+.+.+|..++ ..|..+++-+.-++. ...++.|.+.|++.
T Consensus 3 ~LT~rQ~~vL~~I~~~~~~~G~~Pt~rEIa~~~g~~S~~tv~~~L~~Le~kG~I~ 57 (65)
T PF01726_consen 3 ELTERQKEVLEFIREYIEENGYPPTVREIAEALGLKSTSTVQRHLKALERKGYIR 57 (65)
T ss_dssp ---HHHHHHHHHHHHHHHHHSS---HHHHHHHHTSSSHHHHHHHHHHHHHTTSEE
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCChHHHHHHHHHHHHCcCcc
Confidence 58999999999999999865 567777765554443 46778888899874
No 95
>COG2368 Aromatic ring hydroxylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=52.63 E-value=18 Score=34.68 Aligned_cols=29 Identities=14% Similarity=0.108 Sum_probs=26.3
Q ss_pred EEEeCCEEEEeeeeeeeeCCCcccEEEEE
Q psy10338 272 AVKKGDEWILNGQKMWITNGGVANWQNRT 300 (312)
Q Consensus 272 A~~~~~g~~l~G~k~~vs~~~~ad~~~v~ 300 (312)
.+++++|-++.|.|..+|++..+|.++|.
T Consensus 175 vee~~dGIVVrGAK~~aT~~a~tdei~V~ 203 (493)
T COG2368 175 VEETEDGIVVRGAKALATGSALTDEIFVL 203 (493)
T ss_pred EEEecCceEEEChHHHhccccccceEEEe
Confidence 35578899999999999999999999988
No 96
>TIGR02310 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Shigella, Photorhabdus and Pasteurella. The family modelled by this alignment is narrowly limited to gammaproteobacteria to exclude other aromatic hydroxylases involved in various secondary metabolic pathways. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=47.70 E-value=84 Score=30.76 Aligned_cols=77 Identities=19% Similarity=0.197 Sum_probs=42.9
Q ss_pred ccEEEcceecCCCCcc--ccCC--------ccHHHHHhhhhccC-hhHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccc
Q psy10338 115 RGITFEDVRVPKENVL--LGEG--------AGFKIAMDTFDKTR-PPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAH 183 (312)
Q Consensus 115 ~~v~f~dv~Vp~~~ll--G~~g--------~G~~~~~~~l~~~R-~~~aa~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~ 183 (312)
+-++||||+||=|++. |... .++..........| +...=..+|++..+.+. .-+..+
T Consensus 264 a~vVFDdVfVPWErVF~~gd~e~~~~~~~~~~~~~~~~~q~~~r~~~k~dfl~G~a~~~ae~------------~G~~~~ 331 (519)
T TIGR02310 264 AILVMDSVFIPWENVLIYRDFERCRTWAQYGGFARLFPMQACTRLAVKLDFITGLLHKALQC------------TGVLEF 331 (519)
T ss_pred EEEEeCCcccchHHceecCCHHHHHhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------hCcccc
Confidence 5789999999999987 3311 12211111111112 22233344444444332 234578
Q ss_pred hhhHHHHHHhhhHHHHHHHH
Q psy10338 184 QGMYLKIQYVSIFEREIQLM 203 (312)
Q Consensus 184 q~v~~~l~~~a~~~~~~~~~ 203 (312)
+.||.++.....+..-.+..
T Consensus 332 ~hVqekl~Eli~~~E~~~a~ 351 (519)
T TIGR02310 332 RGVQAQMGEVVAWRNLFWTL 351 (519)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 89999988888876665543
No 97
>COG2368 Aromatic ring hydroxylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=35.38 E-value=2.3e+02 Score=27.42 Aligned_cols=77 Identities=14% Similarity=0.092 Sum_probs=42.5
Q ss_pred ccEEEcceecCCCCccc--cCC--ccHHHHHhhhhccChhHHH-------HHHHHHHHHHHHHHHHHHhhccCCCCcccc
Q psy10338 115 RGITFEDVRVPKENVLL--GEG--AGFKIAMDTFDKTRPPVAA-------GAVGLAQRCLDEATKYALERKAFGVPIAAH 183 (312)
Q Consensus 115 ~~v~f~dv~Vp~~~llG--~~g--~G~~~~~~~l~~~R~~~aa-------~~~G~~~~~l~~a~~ya~~R~~fg~~l~~~ 183 (312)
+-|.||||.||=|+++- ... ..+.........-|...+. ..+|++...++. .-+.++
T Consensus 260 ailVfDdVfVPWERVf~y~d~~~~~~~~~~~~Fa~~~~~q~~~~k~~k~d~i~G~~~~~~~~------------~Gv~~~ 327 (493)
T COG2368 260 AILVFDDVFVPWERVFIYRDLERAYAWYAVSGFARLHRQQAVGRKAVKLDFILGAAYLIAET------------NGVEEF 327 (493)
T ss_pred eEEEecccccchhheeeeccHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHh------------hCccch
Confidence 45999999999998863 333 2222222222222322222 223333332221 245678
Q ss_pred hhhHHHHHHhhhHHHHHHHH
Q psy10338 184 QGMYLKIQYVSIFEREIQLM 203 (312)
Q Consensus 184 q~v~~~l~~~a~~~~~~~~~ 203 (312)
+.||.++.....+..-.|..
T Consensus 328 ~hIq~kl~Emi~~~e~~~al 347 (493)
T COG2368 328 RHIQEKLGEMIALLELMWAL 347 (493)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 99999988888876665544
No 98
>TIGR02310 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Shigella, Photorhabdus and Pasteurella. The family modelled by this alignment is narrowly limited to gammaproteobacteria to exclude other aromatic hydroxylases involved in various secondary metabolic pathways. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=34.29 E-value=19 Score=35.14 Aligned_cols=29 Identities=17% Similarity=0.310 Sum_probs=25.9
Q ss_pred EEEeCCEEEEeeeeeeeeCCCcccEEEEE
Q psy10338 272 AVKKGDEWILNGQKMWITNGGVANWQNRT 300 (312)
Q Consensus 272 A~~~~~g~~l~G~k~~vs~~~~ad~~~v~ 300 (312)
.+++++|.+|+|.|...|++..+|.++|.
T Consensus 178 Vee~~dGIVVrGAK~~aT~a~~a~ei~V~ 206 (519)
T TIGR02310 178 EEERDDGIVVSGAKVVATNSALTHYNFIG 206 (519)
T ss_pred EEEcCCcEEEeCHHHHhcccchhcceeec
Confidence 45578899999999999999999999984
No 99
>PRK11074 putative DNA-binding transcriptional regulator; Provisional
Probab=28.34 E-value=88 Score=27.67 Aligned_cols=61 Identities=15% Similarity=0.077 Sum_probs=51.4
Q ss_pred cCCChhhhhhhhhhHHHHHHHHHHHHHHhhhcCcccccccccCCCCCHHHHHHHHHHHHhhhh
Q psy10338 5 DKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQEFQALARKFCRE 67 (312)
Q Consensus 5 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~m~~~l~~~~~~l~~~~~~f~~~ 67 (312)
++..+..||..++.++.++.+. .++.++++|.|+.....-.+.+|+.-+.|.+.+++++..
T Consensus 15 e~~s~s~AA~~L~isQpavS~~--I~~LE~~lg~~LF~R~~r~~~lT~~G~~l~~~~~~~l~~ 75 (300)
T PRK11074 15 RTGSFSAAAQELHRVPSAVSYT--VRQLEEWLAVPLFERRHRDVELTPAGEWFVKEARSVIKK 75 (300)
T ss_pred HhCCHHHHHHHhCCCHHHHHHH--HHHHHHHhCCeeEEeCCCCceECccHHHHHHHHHHHHHH
Confidence 5667889999999999998876 468899999999998877888999888888888777753
No 100
>PHA02095 hypothetical protein
Probab=26.96 E-value=46 Score=22.86 Aligned_cols=21 Identities=10% Similarity=0.007 Sum_probs=14.9
Q ss_pred CCEEEEeeeeeeeeCCCcccEEEEE
Q psy10338 276 GDEWILNGQKMWITNGGVANWQNRT 300 (312)
Q Consensus 276 ~~g~~l~G~k~~vs~~~~ad~~~v~ 300 (312)
..+|++||.|-|. .-|-+++.
T Consensus 26 q~~yv~ng~wefs----rvdgilci 46 (84)
T PHA02095 26 QNGYVENGSWEFS----RVDGILCI 46 (84)
T ss_pred eeeEEecCcEEEE----eccEEEEe
Confidence 4589999999984 33555554
No 101
>TIGR02424 TF_pcaQ pca operon transcription factor PcaQ. Members of this family are LysR-family transcription factors associated with operons for catabolism of protocatechuate. Members occur only in Proteobacteria.
Probab=26.08 E-value=1.3e+02 Score=26.53 Aligned_cols=60 Identities=15% Similarity=0.074 Sum_probs=50.7
Q ss_pred cCCChhhhhhhhhhHHHHHHHHHHHHHHhhhcCcccccccccCCCCCHHHHHHHHHHHHhhh
Q psy10338 5 DKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQEFQALARKFCR 66 (312)
Q Consensus 5 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~m~~~l~~~~~~l~~~~~~f~~ 66 (312)
++..+..||..+|.+..+++++. .+.++++|.++.....=.+.+|+.-+.|.+.++.++.
T Consensus 16 ~~gS~s~AA~~L~isq~avS~~I--~~LE~~lg~~LF~R~~~~~~lT~~G~~l~~~a~~~l~ 75 (300)
T TIGR02424 16 RQGSVKRAAEALHITQPAVSKTL--RELEEILGTPLFERDRRGIRLTRYGELFLRHAGASLA 75 (300)
T ss_pred HhCCHHHHHHHhCCChHHHHHHH--HHHHHHhCCeEEEEcCCCccccHhHHHHHHHHHHHHH
Confidence 56678899999999999988765 5789999999999877778899998888888888775
No 102
>PF15631 Imm-NTF2-2: NTF2 fold immunity protein
Probab=22.95 E-value=1.1e+02 Score=20.94 Aligned_cols=21 Identities=29% Similarity=0.464 Sum_probs=14.6
Q ss_pred EEEEeCCEEEEeeeeeeeeCC
Q psy10338 271 KAVKKGDEWILNGQKMWITNG 291 (312)
Q Consensus 271 ~A~~~~~g~~l~G~k~~vs~~ 291 (312)
.++-.++.|+|+|+..--+.+
T Consensus 25 ~v~~~~~~WiV~Gtl~~~~~G 45 (66)
T PF15631_consen 25 RVTLDGDSWIVEGTLPPGMLG 45 (66)
T ss_pred EEecCCCeEEEEeecCCCccC
Confidence 456677889999997543333
No 103
>PRK03601 transcriptional regulator HdfR; Provisional
Probab=22.87 E-value=1.5e+02 Score=25.91 Aligned_cols=61 Identities=13% Similarity=0.077 Sum_probs=50.9
Q ss_pred cCCChhhhhhhhhhHHHHHHHHHHHHHHhhhcCcccccccccCCCCCHHHHHHHHHHHHhhhh
Q psy10338 5 DKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQEFQALARKFCRE 67 (312)
Q Consensus 5 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~m~~~l~~~~~~l~~~~~~f~~~ 67 (312)
+...+..||..++.++.++... .++.++.+|.|+.....=...+|+.-+.+.+.+++++++
T Consensus 14 ~~gs~s~AA~~L~isqpavS~~--I~~LE~~lG~~LF~R~~r~~~lT~~G~~l~~~a~~~l~~ 74 (275)
T PRK03601 14 RTRHFGRAAESLYLTQSAVSFR--IRQLENQLGVNLFTRHRNNIRLTAAGERLLPYAETLMNT 74 (275)
T ss_pred HcCCHHHHHHHhCCChHHHHHH--HHHHHHHhCCceEEECCCceEECHhHHHHHHHHHHHHHH
Confidence 5677889999999999998875 567899999999988776788999988888888877753
No 104
>PRK10082 cell density-dependent motility repressor; Provisional
Probab=21.71 E-value=2.1e+02 Score=25.22 Aligned_cols=62 Identities=19% Similarity=0.166 Sum_probs=51.1
Q ss_pred ccCCChhhhhhhhhhHHHHHHHHHHHHHHhhhcCcccccccccCCCCCHHHHHHHHHHHHhhhh
Q psy10338 4 FDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQEFQALARKFCRE 67 (312)
Q Consensus 4 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~m~~~l~~~~~~l~~~~~~f~~~ 67 (312)
.++..+..||-.++.+..++.+.. ++..+++|.|+.....=.+.+|+.-+.|.+.++.+++.
T Consensus 23 ~e~gS~t~AA~~L~iSQpavS~~I--~~LE~~lG~~Lf~R~~r~~~lT~~G~~l~~~a~~~l~~ 84 (303)
T PRK10082 23 EKCRNFSQAAVSRNVSQPAFSRRI--RALEQAIGVELFNRQVTPLQLSEQGKIFHSQIRHLLQQ 84 (303)
T ss_pred HhcCCHHHHHHHhCCChHHHHHHH--HHHHHHcCCEEEEecCCCCccCHHHHHHHHHHHHHHHH
Confidence 356778889999999999988764 67788999999987766788999988888888887653
No 105
>PRK10094 DNA-binding transcriptional activator AllS; Provisional
Probab=21.30 E-value=1.7e+02 Score=26.11 Aligned_cols=62 Identities=13% Similarity=0.047 Sum_probs=51.2
Q ss_pred ccCCChhhhhhhhhhHHHHHHHHHHHHHHhhhcCcccccccccCCCCCHHHHHHHHHHHHhhhh
Q psy10338 4 FDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQEFQALARKFCRE 67 (312)
Q Consensus 4 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~m~~~l~~~~~~l~~~~~~f~~~ 67 (312)
.++..+..||..++.+.-++.++. .+.++++|.|+.....=.+.+|++-+.+.+.++.++.+
T Consensus 14 ~e~gs~s~AA~~L~iSQpavS~~I--~~LE~~lg~~Lf~R~~r~~~lT~~G~~l~~~a~~il~~ 75 (308)
T PRK10094 14 AETGSFSKAAERLCKTTATISYRI--KLLEENTGVALFFRTTRSVTLTAAGEHLLSQARDWLSW 75 (308)
T ss_pred HHhCCHHHHHHHhcCCHHHHHHHH--HHHHHHhCCEEEeeCCCceeECHhHHHHHHHHHHHHHH
Confidence 356678889999999999988765 67899999999998776788999988888888877653
No 106
>PRK11242 DNA-binding transcriptional regulator CynR; Provisional
Probab=20.61 E-value=1.5e+02 Score=25.95 Aligned_cols=61 Identities=16% Similarity=0.163 Sum_probs=50.7
Q ss_pred ccCCChhhhhhhhhhHHHHHHHHHHHHHHhhhcCcccccccccCCCCCHHHHHHHHHHHHhhh
Q psy10338 4 FDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQEFQALARKFCR 66 (312)
Q Consensus 4 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~m~~~l~~~~~~l~~~~~~f~~ 66 (312)
.++..+..||-.+|.++.++.... .+.++++|.++.....=.+.+|++-+.|.+.+.+++.
T Consensus 13 ~~~gs~s~AA~~L~isqsavS~~i--~~LE~~lg~~Lf~R~~~~~~lT~~G~~l~~~~~~il~ 73 (296)
T PRK11242 13 AEHGNFTRAAEALHVSQPTLSQQI--RQLEESLGVQLFDRSGRTVRLTDAGEVYLRYARRALQ 73 (296)
T ss_pred HHhCCHHHHHHHcCCCchHHHHHH--HHHHHHhCCeeEeEcCCceeechhHHHHHHHHHHHHH
Confidence 356678889999999999988765 6788999999998776677899998888888887775
No 107
>PF05428 CRF-BP: Corticotropin-releasing factor binding protein (CRF-BP); InterPro: IPR008435 This family consists of several eukaryotic corticotropin-releasing factor binding proteins (CRF-BP or CRH-BP). Corticotropin-releasing hormone (CRH) plays multiple roles in vertebrate species. In mammals, it is the major hypothalamic releasing factor for pituitary adrenocorticotropin secretion, and is a neurotransmitter or neuromodulator at other sites in the central nervous system. In non-mammalian vertebrates, CRH not only acts as a neurotransmitter and hypophysiotropin, it also acts as a potent thyrotropin-releasing factor, allowing CRH to regulate both the adrenal and thyroid axes, especially in development. CRH-BP is thought to play an inhibitory role in which it binds CRH and other CRH-like ligands and prevents the activation of CRH receptors. There is however evidence that CRH-BP may also exhibit diverse extra and intracellular roles in a cell specific fashion and at specific times in development [].
Probab=20.51 E-value=38 Score=30.32 Aligned_cols=40 Identities=30% Similarity=0.390 Sum_probs=22.0
Q ss_pred ccceeeecCCCCCC----CcCCceeE---EEEeCCEEEEeeeeeeee
Q psy10338 250 GLGAYCVTEPGAGS----DVNGVKTK---AVKKGDEWILNGQKMWIT 289 (312)
Q Consensus 250 ~~~~~a~tEp~~gs----d~~~~~t~---A~~~~~g~~l~G~k~~vs 289 (312)
..+++-++||+-=- +..++.+. -.+.=|||+|||+|--.+
T Consensus 80 ~Ca~y~iaePd~~IeI~~~~vdidC~~G~ll~v~DGW~LnGe~FPs~ 126 (311)
T PF05428_consen 80 VCAAYFIAEPDELIEIEFDHVDIDCEGGDLLKVFDGWELNGEKFPSS 126 (311)
T ss_pred eeEEEEEeCCCeEEEEEEEEeeccCCCCCEEEEEeceEECccCCcCc
Confidence 45677888986311 11112221 123347899999985443
No 108
>PRK11062 nhaR transcriptional activator NhaR; Provisional
Probab=20.42 E-value=2e+02 Score=25.28 Aligned_cols=61 Identities=13% Similarity=-0.061 Sum_probs=51.2
Q ss_pred cCCChhhhhhhhhhHHHHHHHHHHHHHHhhhcCcccccccccCCCCCHHHHHHHHHHHHhhhh
Q psy10338 5 DKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQEFQALARKFCRE 67 (312)
Q Consensus 5 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~m~~~l~~~~~~l~~~~~~f~~~ 67 (312)
++..+..||..+|.+.-++.+.. ...++++|.++.....=.+.+|++-+.+.+.+++++..
T Consensus 17 e~gs~s~AA~~L~isqpavS~~I--~~LE~~lg~~Lf~R~~r~~~lT~~G~~l~~~a~~il~~ 77 (296)
T PRK11062 17 KEGSVVGAAEALFLTPQTITGQI--KALEERLQGKLFKRKGRGLEPTELGELVFRYADKMFTL 77 (296)
T ss_pred hcCCHHHHHHHhCCChHHHHHHH--HHHHHHcCccceeecCCceeECHhHHHHHHHHHHHHHH
Confidence 56778899999999999998765 56788999999987766788999998888888887763
No 109
>TIGR03418 chol_sulf_TF putative choline sulfate-utilization transcription factor. Members of this protein family are transcription factors of the LysR family. Their genes typically are divergently transcribed from choline-sulfatase genes. That enzyme makes choline, a precursor to the osmoprotectant glycine-betaine, available by hydrolysis of choline sulfate.
Probab=20.25 E-value=1.7e+02 Score=25.58 Aligned_cols=61 Identities=18% Similarity=0.110 Sum_probs=51.2
Q ss_pred ccCCChhhhhhhhhhHHHHHHHHHHHHHHhhhcCcccccccccCCCCCHHHHHHHHHHHHhhh
Q psy10338 4 FDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQEFQALARKFCR 66 (312)
Q Consensus 4 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~m~~~l~~~~~~l~~~~~~f~~ 66 (312)
.++..+..||..++.+..++.+.. .+.++++|.++...+.=.+.+|+.-+.|.+.++..+.
T Consensus 13 ~~~gs~s~AA~~L~itqpavS~~I--k~LE~~lg~~LF~R~~r~~~lT~~G~~l~~~a~~il~ 73 (291)
T TIGR03418 13 ARLASFTAAARELGSTQPAVSQQV--KRLEEELGTPLFERGHRGIELTEDGQRLFEAVRAGLD 73 (291)
T ss_pred HHhCCHHHHHHHhCCCHHHHHHHH--HHHHHHhCcHHhhcCCCceeEcHhHHHHHHHHHHHHH
Confidence 356678889999999999988765 5788999999998877778899999988888888765
Done!