RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10338
(312 letters)
>gnl|CDD|173846 cd01157, MCAD, Medium chain acyl-CoA dehydrogenase. MCADs are
mitochondrial beta-oxidation enzymes, which catalyze the
alpha,beta dehydrogenation of the corresponding medium
chain acyl-CoA by FAD, which becomes reduced. The
reduced form of MCAD is reoxidized in the oxidative
half-reaction by electron-transferring flavoprotein
(ETF), from which the electrons are transferred to the
mitochondrial respiratory chain coupled with ATP
synthesis. MCAD is a homotetramer.
Length = 378
Score = 167 bits (424), Expect = 4e-49
Identities = 71/83 (85%), Positives = 73/83 (87%)
Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCL 163
E NMGQR SDTRGITFEDVRVPKENVL+GEGAGFKIAM FDKTRPPVAAGAVGLAQR L
Sbjct: 197 ELNMGQRCSDTRGITFEDVRVPKENVLIGEGAGFKIAMGAFDKTRPPVAAGAVGLAQRAL 256
Query: 164 DEATKYALERKAFGVPIAAHQGM 186
DEATKYALERK FG IA HQ +
Sbjct: 257 DEATKYALERKTFGKLIAEHQAV 279
Score = 140 bits (354), Expect = 9e-39
Identities = 61/105 (58%), Positives = 68/105 (64%), Gaps = 27/105 (25%)
Query: 219 GGLELSVFDGCLVAEELAYGCTGIMTALEASGLG-------------------------- 252
GGL L FD CL+ EELAYGCTG+ TA+EA+ LG
Sbjct: 56 GGLGLGTFDTCLITEELAYGCTGVQTAIEANSLGQMPVIISGNDEQKKKYLGRMTEEPLM 115
Query: 253 -AYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANW 296
AYCVTEPGAGSDV G+KTKA KKGDE+I+NGQKMWITNGG ANW
Sbjct: 116 CAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANW 160
Score = 98.4 bits (245), Expect = 2e-23
Identities = 42/71 (59%), Positives = 51/71 (71%)
Query: 50 LNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQ 109
L E Q+EFQ ARKF REEIIPVAAE+D++GEYPW ++K+A ELGL+N HIP +G
Sbjct: 1 LTEQQKEFQETARKFAREEIIPVAAEYDKSGEYPWPLIKRAWELGLMNTHIPEDCGGLGL 60
Query: 110 RASDTRGITFE 120
DT IT E
Sbjct: 61 GTFDTCLITEE 71
Score = 91.1 bits (226), Expect = 1e-20
Identities = 37/44 (84%), Positives = 37/44 (84%)
Query: 1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQ 44
M FDKTRPPVAAGAVGLAQR LDEATKYALERK FG IA HQ
Sbjct: 234 MGAFDKTRPPVAAGAVGLAQRALDEATKYALERKTFGKLIAEHQ 277
>gnl|CDD|173847 cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and
eukaryotic short/branched chain acyl-CoA dehydrogenases.
Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a
mitochondrial beta-oxidation enzyme. It catalyzes the
alpha,beta dehydrogenation of the corresponding
trans-enoyl-CoA by FAD, which becomes reduced. The
reduced form of SCAD is reoxidized in the oxidative
half-reaction by electron-transferring flavoprotein
(ETF), from which the electrons are transferred to the
mitochondrial respiratory chain coupled with ATP
synthesis. This subgroup also contains the eukaryotic
short/branched chain acyl-CoA dehydrogenase(SBCAD), the
bacterial butyryl-CoA dehydorgenase(BCAD) and
2-methylbutyryl-CoA dehydrogenase, which is involved in
isoleucine catabolism. These enzymes are homotetramers.
Length = 373
Score = 113 bits (284), Expect = 9e-29
Identities = 54/105 (51%), Positives = 64/105 (60%), Gaps = 4/105 (3%)
Query: 86 IVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFD 145
IV++ GL G E +G R S T + FEDVRVPKEN+L EG GFKIAM T D
Sbjct: 179 IVERDTP-GLSVG---KKEDKLGIRGSSTTELIFEDVRVPKENILGEEGEGFKIAMQTLD 234
Query: 146 KTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKI 190
R +AA A+G+AQ LD A YA ERK FG PIA QG+ K+
Sbjct: 235 GGRIGIAAQALGIAQAALDAAVDYAKERKQFGKPIADFQGIQFKL 279
Score = 85.8 bits (213), Expect = 6e-19
Identities = 36/106 (33%), Positives = 50/106 (47%), Gaps = 28/106 (26%)
Query: 219 GGLELSVFDGCLVAEELAYGCTGIMTALE--------------------------ASG-- 250
GG L + EELA + + A+G
Sbjct: 54 GGAGLDFLAYAIAIEELAKVDASVAVIVSVHNSLGANPIIKFGTEEQKKKYLPPLATGEK 113
Query: 251 LGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANW 296
+GA+ ++EPGAGSD +KT A K GD+++LNG KMWITNGG A++
Sbjct: 114 IGAFALSEPGAGSDAAALKTTAKKDGDDYVLNGSKMWITNGGEADF 159
Score = 57.7 bits (140), Expect = 2e-09
Identities = 24/44 (54%), Positives = 27/44 (61%)
Query: 1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQ 44
M T D R +AA A+G+AQ LD A YA ERK FG PIA Q
Sbjct: 230 MQTLDGGRIGIAAQALGIAQAALDAAVDYAKERKQFGKPIADFQ 273
Score = 51.1 bits (123), Expect = 2e-07
Identities = 21/50 (42%), Positives = 29/50 (58%)
Query: 52 ETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIP 101
E Q + R F +EI P+AAE D GE+P ++K+ ELGL+ IP
Sbjct: 1 EEHQMIRKTVRDFAEKEIAPLAAEMDEKGEFPREVIKEMAELGLMGIPIP 50
>gnl|CDD|173838 cd00567, ACAD, Acyl-CoA dehydrogenase. Both mitochondrial acyl-CoA
dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases
(AXO) catalyze the alpha,beta dehydrogenation of the
corresponding trans-enoyl-CoA by FAD, which becomes
reduced. The reduced form of ACAD is reoxidized in the
oxidative half-reaction by electron-transferring
flavoprotein (ETF), from which the electrons are
transferred to the mitochondrial respiratory chain
coupled with ATP synthesis. In contrast, AXO catalyzes
a different oxidative half-reaction, in which the
reduced FAD is reoxidized by molecular oxygen. The ACAD
family includes the eukaryotic beta-oxidation enzymes,
short (SCAD), medium (MCAD), long (LCAD) and very-long
(VLCAD) chain acyl-CoA dehydrogenases. These enzymes all
share high sequence similarity, but differ in their
substrate specificities. The ACAD family also includes
amino acid catabolism enzymes such as Isovaleryl-CoA
dehydrogenase (IVD), short/branched chain acyl-CoA
dehydrogenases(SBCAD), Isobutyryl-CoA dehydrogenase
(IBDH), glutaryl-CoA deydrogenase (GCD) and
Crotonobetainyl-CoA dehydrogenase. The mitochondrial
ACAD's are generally homotetramers, except for VLCAD,
which is a homodimer. Related enzymes include the SOS
adaptive reponse proten aidB, Naphthocyclinone
hydroxylase (NcnH), and and Dibenzothiophene (DBT)
desulfurization enzyme C (DszC).
Length = 327
Score = 109 bits (275), Expect = 9e-28
Identities = 38/82 (46%), Positives = 52/82 (63%)
Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCL 163
MG R S T + F+DVRVP++N+L EG GF++AM + R +AA A+G A+ L
Sbjct: 150 WDKMGMRGSGTGELVFDDVRVPEDNLLGEEGGGFELAMKGLNVGRLLLAAVALGAARAAL 209
Query: 164 DEATKYALERKAFGVPIAAHQG 185
DEA +YA +RK FG P+A Q
Sbjct: 210 DEAVEYAKQRKQFGKPLAEFQA 231
Score = 78.9 bits (195), Expect = 1e-16
Identities = 24/46 (52%), Positives = 37/46 (80%)
Query: 251 LGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANW 296
+ A+ +TEPGAGSD+ G++T A K GD ++LNG+K++I+NGG A+
Sbjct: 70 IAAFALTEPGAGSDLAGIRTTARKDGDGYVLNGRKIFISNGGDADL 115
Score = 61.5 bits (150), Expect = 8e-11
Identities = 20/44 (45%), Positives = 27/44 (61%)
Query: 1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQ 44
M + R +AA A+G A+ LDEA +YA +RK FG P+A Q
Sbjct: 187 MKGLNVGRLLLAAVALGAARAALDEAVEYAKQRKQFGKPLAEFQ 230
Score = 41.9 bits (99), Expect = 2e-04
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 52 ETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELG 94
E Q+E + AR+F EE+ P A E T E PW ++ + L
Sbjct: 1 EEQRELRDSAREFAAEELEPYARERRETPEEPWELLAELGLLL 43
>gnl|CDD|224871 COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism].
Length = 393
Score = 104 bits (260), Expect = 2e-25
Identities = 53/122 (43%), Positives = 67/122 (54%), Gaps = 7/122 (5%)
Query: 69 IIPVAAEHDRTGEYPWGI----VKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRV 124
+ V A D GI V K G+ G I + MG R S T + F+DVRV
Sbjct: 172 WLLVLARTDPAPGKHKGISLFLVPKDLTPGVSVGPI---LKKMGLRGSATGEVFFDDVRV 228
Query: 125 PKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQ 184
P EN+L EG GFKIAM+T + R +AA A+G+A+ L+EA YA ERK FG PIA Q
Sbjct: 229 PAENLLGEEGDGFKIAMETLNVERLGIAAQALGIAEAALEEAVAYARERKQFGRPIADFQ 288
Query: 185 GM 186
+
Sbjct: 289 LV 290
Score = 69.1 bits (169), Expect = 3e-13
Identities = 36/110 (32%), Positives = 52/110 (47%), Gaps = 32/110 (29%)
Query: 219 GGLELSVFDGCLVAEELAYGCTG--------------IMTALEASG-------------- 250
GGL LS + V EELA G + + G
Sbjct: 63 GGLGLSPLEQAAVLEELARADAGGALALGLTHGGLGALAPTILRFGTEEQKRRYLPRLAS 122
Query: 251 ---LGAYCVTEPGAGSDVNGVK-TKAVKKGDEWILNGQKMWITNGGVANW 296
+GA+ +TEPGAGSD+ ++ T AV+ +++LNGQK+WI+N VA+W
Sbjct: 123 GELIGAFALTEPGAGSDLASLRTTAAVRDDGDYVLNGQKIWISNAPVADW 172
Score = 57.9 bits (140), Expect = 2e-09
Identities = 22/46 (47%), Positives = 30/46 (65%)
Query: 1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVF 46
M+T + R +AA A+G+A+ L+EA YA ERK FG PIA Q+
Sbjct: 245 METLNVERLGIAAQALGIAEAALEEAVAYARERKQFGRPIADFQLV 290
Score = 41.7 bits (98), Expect = 3e-04
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 49 ELNETQQEFQALARKFCREEIIPVAAEHDR---TGEYPWGIVKKAHELGLINGHIPASEQ 105
+L+E Q+ +A R+F EE+ P AAE DR +P +++ E GL+ IP
Sbjct: 4 DLSEEQEALRAEVREFAEEELAPEAAEIDRRIEDERFPRELLRALAEAGLLGLTIPEEYG 63
Query: 106 NMG 108
+G
Sbjct: 64 GLG 66
>gnl|CDD|173849 cd01160, LCAD, Long chain acyl-CoA dehydrogenase. LCAD is an
acyl-CoA dehydrogenases (ACAD), which is found in the
mitochondria of eukaryotes and in some prokaryotes. It
catalyzes the alpha, beta dehydrogenation of the
corresponding trans-enoyl-CoA by FAD, which becomes
reduced. The reduced form of LCAD is reoxidized in the
oxidative half-reaction by electron-transferring
flavoprotein (ETF), from which the electrons are
transferred to the mitochondrial respiratory chain
coupled with ATP synthesis. LCAD acts as a homodimer.
Length = 372
Score = 87.6 bits (217), Expect = 2e-19
Identities = 35/84 (41%), Positives = 47/84 (55%)
Query: 107 MGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEA 166
MG +A DT + F+D RVP EN+L E GF M + R +AAGA+ A+ L+E
Sbjct: 196 MGWKAQDTAELFFDDCRVPAENLLGEENKGFYYLMQNLPQERLLIAAGALAAAEFMLEET 255
Query: 167 TKYALERKAFGVPIAAHQGMYLKI 190
Y +RKAFG +A Q + KI
Sbjct: 256 RNYVKQRKAFGKTLAQLQVVRHKI 279
Score = 63.7 bits (155), Expect = 2e-11
Identities = 34/100 (34%), Positives = 49/100 (49%), Gaps = 27/100 (27%)
Query: 219 GGLELSVFDGCLVAEELAY-GCTGIMTALE------------------------ASG--L 251
GG+ + ++ EELA G +G +L +G +
Sbjct: 54 GGIGGDLLSAAVLWEELARAGGSGPGLSLHTDIVSPYITRAGSPEQKERVLPQMVAGKKI 113
Query: 252 GAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNG 291
GA +TEPGAGSD+ G++T A K GD ++LNG K +ITNG
Sbjct: 114 GAIAMTEPGAGSDLQGIRTTARKDGDHYVLNGSKTFITNG 153
Score = 52.9 bits (127), Expect = 8e-08
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQEFQAL 60
M + R +AAGA+ A+ L+E Y +RKAFG +A QV ++ E + A+
Sbjct: 230 MQNLPQERLLIAAGALAAAEFMLEETRNYVKQRKAFGKTLAQLQVVRHKIAELATKV-AV 288
Query: 61 ARKF 64
R F
Sbjct: 289 TRAF 292
Score = 36.7 bits (85), Expect = 0.014
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 57 FQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRG 116
F+ + R+F +E+ P E ++ GE P + +KA E GL+ P + G D
Sbjct: 6 FRDVVRRFFAKEVAPFHHEWEKAGEVPREVWRKAGEQGLLGVGFP---EEYGGIGGDLLS 62
>gnl|CDD|173845 cd01156, IVD, Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA
dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase,
which catalyzes the third step in leucine catabolism,
the conversion of isovaleryl-CoA (3-methylbutyryl-CoA)
into 3-methylcrotonyl-CoA. IVD is a homotetramer and has
the greatest affinity for small branched chain
substrates.
Length = 376
Score = 84.8 bits (210), Expect = 2e-18
Identities = 35/86 (40%), Positives = 47/86 (54%)
Query: 107 MGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEA 166
+G R S+T + FED VP+EN+L GE G + M D R +A G +G+ Q LD A
Sbjct: 199 LGMRGSNTCELVFEDCEVPEENILGGENKGVYVLMSGLDYERLVLAGGPIGIMQAALDVA 258
Query: 167 TKYALERKAFGVPIAAHQGMYLKIQY 192
YA +RK FG PI Q + K+
Sbjct: 259 IPYAHQRKQFGQPIGEFQLVQGKLAD 284
Score = 68.2 bits (167), Expect = 7e-13
Identities = 27/46 (58%), Positives = 34/46 (73%), Gaps = 2/46 (4%)
Query: 248 ASG--LGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNG 291
SG +GA ++EP AGSDV +K +A KKGD ++LNG KMWITNG
Sbjct: 112 ISGEHIGALAMSEPNAGSDVVSMKLRAEKKGDRYVLNGSKMWITNG 157
Score = 50.1 bits (120), Expect = 5e-07
Identities = 26/78 (33%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQEFQAL 60
M D R +A G +G+ Q LD A YA +RK FG PI Q+ +L + A
Sbjct: 233 MSGLDYERLVLAGGPIGIMQAALDVAIPYAHQRKQFGQPIGEFQLVQGKLADMYTRLNA- 291
Query: 61 ARKFCREEIIPVAAEHDR 78
R + VA DR
Sbjct: 292 ----SRSYLYTVAKACDR 305
Score = 43.2 bits (102), Expect = 1e-04
Identities = 17/53 (32%), Positives = 31/53 (58%)
Query: 50 LNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPA 102
L++ + + R+F ++EI P+AA+ DR E+P + +K +LGL+ P
Sbjct: 2 LDDEIEMLRQSVREFAQKEIAPLAAKIDRDNEFPRDLWRKMGKLGLLGITAPE 54
>gnl|CDD|173851 cd01162, IBD, Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA
dehydrogenase (IBD) catalyzes the alpha, beta-
dehydrogenation of short branched chain acyl-CoA
intermediates in valine catabolism. It is predicted to
be a homotetramer.
Length = 375
Score = 83.3 bits (206), Expect = 5e-18
Identities = 42/89 (47%), Positives = 53/89 (59%)
Query: 102 ASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQR 161
A+E+ MG A TR + FED RVP EN L GEG GF IAM + R +A+ ++G AQ
Sbjct: 191 ANEKKMGWNAQPTRAVIFEDCRVPVENRLGGEGQGFGIAMAGLNGGRLNIASCSLGAAQA 250
Query: 162 CLDEATKYALERKAFGVPIAAHQGMYLKI 190
LD A Y ERK FG P+A Q + K+
Sbjct: 251 ALDLARAYLEERKQFGKPLADFQALQFKL 279
Score = 69.0 bits (169), Expect = 3e-13
Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 27/104 (25%)
Query: 219 GGLELSVFDGCLVAEELAYGCTGI--------MTA--LEASG-----------------L 251
GG LS D ++ E L+ GC M A +++ G L
Sbjct: 56 GGSGLSRLDASIIFEALSTGCVSTAAYISIHNMCAWMIDSFGNDEQRERFLPDLCTMEKL 115
Query: 252 GAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVAN 295
+YC+TEPG+GSD ++T+AV++GD ++LNG K +I+ G ++
Sbjct: 116 ASYCLTEPGSGSDAAALRTRAVREGDHYVLNGSKAFISGAGDSD 159
Score = 45.1 bits (107), Expect = 3e-05
Identities = 19/46 (41%), Positives = 29/46 (63%)
Query: 50 LNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGL 95
LNE Q+ Q +AR F +E+ P AA+ D+ +P +++KA ELG
Sbjct: 1 LNEEQRAIQEVARAFAAKEMAPHAADWDQKKHFPVDVLRKAAELGF 46
Score = 38.6 bits (90), Expect = 0.003
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQEFQAL 60
M + R +A+ ++G AQ LD A Y ERK FG P+A Q +L + E A
Sbjct: 230 MAGLNGGRLNIASCSLGAAQAALDLARAYLEERKQFGKPLADFQALQFKLADMATELVA- 288
Query: 61 ARKFCR 66
+R R
Sbjct: 289 SRLMVR 294
>gnl|CDD|173850 cd01161, VLCAD, Very long chain acyl-CoA dehydrogenase. VLCAD is
an acyl-CoA dehydrogenase (ACAD), which is found in the
mitochondria of eukaryotes and in some bacteria. It
catalyzes the alpha,beta dehydrogenation of the
corresponding trans-enoyl-CoA by FAD, which becomes
reduced. The reduced form of ACAD is reoxidized in the
oxidative half-reaction by electron-transferring
flavoprotein (ETF), from which the electrons are
transferred to the mitochondrial respiratory chain
coupled with ATP synthesis. VLCAD acts as a homodimer.
Length = 409
Score = 79.0 bits (195), Expect = 2e-16
Identities = 38/96 (39%), Positives = 57/96 (59%), Gaps = 4/96 (4%)
Query: 86 IVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFD 145
IV+++ G+ NG E+ MG + S+T + FEDV++P ENVL G GFK+AM+ +
Sbjct: 210 IVERSFG-GVTNG---PPEKKMGIKGSNTAEVYFEDVKIPVENVLGEVGDGFKVAMNILN 265
Query: 146 KTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIA 181
R + A +G +RC+++A YA RK FG I
Sbjct: 266 NGRFGMGAALIGTMKRCIEKAVDYANNRKQFGKKIH 301
Score = 66.3 bits (162), Expect = 3e-12
Identities = 25/52 (48%), Positives = 36/52 (69%), Gaps = 4/52 (7%)
Query: 248 ASG--LGAYCVTEPGAGSDVNGVKTKAVKK--GDEWILNGQKMWITNGGVAN 295
ASG + A+ +TEP +GSD ++T AV G ++LNG K+WITNGG+A+
Sbjct: 134 ASGEWIAAFALTEPSSGSDAASIRTTAVLSEDGKHYVLNGSKIWITNGGIAD 185
Score = 33.2 bits (76), Expect = 0.16
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIA 41
M+ + R + A +G +RC+++A YA RK FG I
Sbjct: 261 MNILNNGRFGMGAALIGTMKRCIEKAVDYANNRKQFGKKIH 301
>gnl|CDD|145755 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, middle domain.
Central domain of Acyl-CoA dehydrogenase has a
beta-barrel fold.
Length = 52
Score = 70.6 bits (174), Expect = 5e-16
Identities = 23/44 (52%), Positives = 33/44 (75%)
Query: 253 AYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANW 296
A+ +TEPGAGSD+ ++T A + GD W+LNG+K WITN +A+
Sbjct: 1 AFALTEPGAGSDLASLETTAERDGDGWVLNGRKWWITNAALADL 44
>gnl|CDD|215284 PLN02519, PLN02519, isovaleryl-CoA dehydrogenase.
Length = 404
Score = 73.8 bits (181), Expect = 1e-14
Identities = 38/92 (41%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Query: 107 MGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEA 166
+G R SDT + FE+ VP+ENVL EG G + M D R +AAG +GL Q CLD
Sbjct: 225 LGMRGSDTCELVFENCFVPEENVLGQEGKGVYVMMSGLDLERLVLAAGPLGLMQACLDVV 284
Query: 167 TKYALERKAFGVPIAAHQ-------GMYLKIQ 191
Y +R+ FG PI Q MY +Q
Sbjct: 285 LPYVRQREQFGRPIGEFQFIQGKLADMYTSLQ 316
Score = 55.7 bits (134), Expect = 1e-08
Identities = 22/45 (48%), Positives = 30/45 (66%)
Query: 251 LGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVAN 295
+GA ++EP +GSDV +K KA + ++LNG KMW TNG VA
Sbjct: 143 VGALAMSEPNSGSDVVSMKCKAERVDGGYVLNGNKMWCTNGPVAQ 187
Score = 41.8 bits (98), Expect = 3e-04
Identities = 21/59 (35%), Positives = 28/59 (47%)
Query: 1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQEFQA 59
M D R +AAG +GL Q CLD Y +R+ FG PI Q +L + Q+
Sbjct: 259 MSGLDLERLVLAAGPLGLMQACLDVVLPYVRQREQFGRPIGEFQFIQGKLADMYTSLQS 317
Score = 34.1 bits (78), Expect = 0.085
Identities = 34/131 (25%), Positives = 52/131 (39%), Gaps = 28/131 (21%)
Query: 30 ALERKAFGVPIAAHQVFYSELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKK 89
A R+ + ++TQ +F+ ++F +E I P AA D T +P V
Sbjct: 6 AKARRRGLARRFSSSSSSLLFDDTQLQFKESVQQFAQENIAPHAAAIDATNSFPKD-VNL 64
Query: 90 AHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFK-IAMDTFDKTR 148
+G N H GIT P+E LG G + IAM+ +
Sbjct: 65 WKLMGDFNLH----------------GIT-----APEEYGGLGLGYLYHCIAMEEISR-- 101
Query: 149 PPVAAGAVGLA 159
A+G+VGL+
Sbjct: 102 ---ASGSVGLS 109
>gnl|CDD|201229 pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-terminal
domain. C-terminal domain of Acyl-CoA dehydrogenase is
an all-alpha, four helical up-and-down bundle.
Length = 150
Score = 67.7 bits (166), Expect = 6e-14
Identities = 27/53 (50%), Positives = 37/53 (69%)
Query: 134 GAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGM 186
G GF +AM+T + R +AA A+GLA+R LDEA +YA +RKAFG P+ Q +
Sbjct: 1 GRGFAVAMETLNHERLLIAAAALGLARRALDEAIEYARQRKAFGRPLIDFQLI 53
Score = 58.4 bits (142), Expect = 1e-10
Identities = 23/45 (51%), Positives = 32/45 (71%)
Query: 1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQV 45
M+T + R +AA A+GLA+R LDEA +YA +RKAFG P+ Q+
Sbjct: 8 METLNHERLLIAAAALGLARRALDEAIEYARQRKAFGRPLIDFQL 52
>gnl|CDD|217220 pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, N-terminal
domain. The N-terminal domain of Acyl-CoA dehydrogenase
is an all-alpha domain.
Length = 113
Score = 66.0 bits (162), Expect = 1e-13
Identities = 21/51 (41%), Positives = 29/51 (56%)
Query: 51 NETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIP 101
E Q+ + R+F EE+ P AAE D GE+P + +K ELGL+ IP
Sbjct: 1 TEEQEALRDTVREFAEEEVAPHAAEWDEEGEFPRELWRKLGELGLLGLTIP 51
Score = 37.1 bits (87), Expect = 0.002
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 219 GGLELSVFDGCLVAEELAYGCTGIMTALEA-SGLGAYCVTEPGAGSD 264
GG L + LVAEELA + AL S L A + G++
Sbjct: 55 GGAGLDYLEYALVAEELARADASVGLALSVHSSLVAPPILR--FGTE 99
>gnl|CDD|173840 cd01151, GCD, Glutaryl-CoA dehydrogenase. Glutaryl-CoA
dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase,
which catalyzes the oxidative decarboxylation of
glutaryl-CoA to crotonyl-CoA and carbon dioxide in the
catabolism of lysine, hydroxylysine, and tryptophan. It
uses electron transfer flavoprotein (ETF) as an electron
acceptor. GCD is a homotetramer. GCD deficiency leads to
a severe neurological disorder in humans.
Length = 386
Score = 68.2 bits (167), Expect = 6e-13
Identities = 46/141 (32%), Positives = 69/141 (48%), Gaps = 8/141 (5%)
Query: 68 EIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKE 127
++ V A +D TG+ I+++ + GL P + RAS T I ++V VP+E
Sbjct: 171 DVFVVWARNDETGKIRGFILERGMK-GL---SAPKIQGKFSLRASITGEIVMDNVFVPEE 226
Query: 128 NVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMY 187
N LL G + + R +A GA+G A+ C A +Y L+RK FG P+AA Q +
Sbjct: 227 N-LLPGAEGLRGPFKCLNNARYGIAWGALGAAEDCYHTARQYVLDRKQFGRPLAAFQLVQ 285
Query: 188 LKIQYVSIFEREIQLMLLGVH 208
K+ + EI L LL
Sbjct: 286 KKLADMLT---EIALGLLACL 303
Score = 63.9 bits (156), Expect = 2e-11
Identities = 24/50 (48%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Query: 248 ASG--LGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVAN 295
ASG +G + +TEP GSD G++T+A K G + LNG K WITN +A+
Sbjct: 122 ASGELIGCFGLTEPNHGSDPGGMETRARKDGGGYKLNGSKTWITNSPIAD 171
Score = 46.6 bits (111), Expect = 8e-06
Identities = 20/54 (37%), Positives = 29/54 (53%)
Query: 6 KTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQEFQA 59
R +A GA+G A+ C A +Y L+RK FG P+AA Q+ +L + E
Sbjct: 244 NARYGIAWGALGAAEDCYHTARQYVLDRKQFGRPLAAFQLVQKKLADMLTEIAL 297
Score = 37.7 bits (88), Expect = 0.006
Identities = 17/55 (30%), Positives = 29/55 (52%)
Query: 46 FYSELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHI 100
L E ++ + AR+FC+EE+ P E R ++ I+++ ELGL+ I
Sbjct: 9 LDDLLTEEERAIRDTAREFCQEELAPRVLEAYREEKFDRKIIEEMGELGLLGATI 63
>gnl|CDD|185640 PTZ00461, PTZ00461, isovaleryl-CoA dehydrogenase; Provisional.
Length = 410
Score = 67.3 bits (164), Expect = 1e-12
Identities = 36/73 (49%), Positives = 44/73 (60%)
Query: 108 GQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEAT 167
G RAS + FEDV VP EN+L EG G M + R +AA AVG+A+R ++ T
Sbjct: 231 GMRASHMCQLFFEDVVVPAENLLGEEGKGMVGMMRNLELERVTLAAMAVGIAERSVELMT 290
Query: 168 KYALERKAFGVPI 180
YA ERKAFG PI
Sbjct: 291 SYASERKAFGKPI 303
Score = 58.4 bits (141), Expect = 1e-09
Identities = 25/51 (49%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Query: 246 LEASGLGAYCVTEPGAGSDVNGVKTKAVKKGDE-WILNGQKMWITNGGVAN 295
L +GA ++EPGAG+DV G++T A K + ++LNG K+WITNG VA+
Sbjct: 147 LTGEHVGAMGMSEPGAGTDVLGMRTTAKKDSNGNYVLNGSKIWITNGTVAD 197
Score = 42.6 bits (100), Expect = 1e-04
Identities = 20/40 (50%), Positives = 26/40 (65%)
Query: 1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPI 40
M + R +AA AVG+A+R ++ T YA ERKAFG PI
Sbjct: 264 MRNLELERVTLAAMAVGIAERSVELMTSYASERKAFGKPI 303
>gnl|CDD|173841 cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar
to fadE6, fadE17, and fadE26. Putative acyl-CoA
dehydrogenases (ACAD). Mitochondrial acyl-CoA
dehydrogenases (ACAD) catalyze the alpha, beta
dehydrogenation of the corresponding trans-enoyl-CoA by
FAD, which becomes reduced. The reduced form of ACAD is
reoxidized in the oxidative half-reaction by
electron-transferring flavoprotein (ETF), from which the
electrons are transferred to the mitochondrial
respiratory chain coupled with ATP synthesis. The ACD
family includes the eukaryotic beta-oxidation, as well
as amino acid catabolism enzymes. These enzymes share
high sequence similarity, but differ in their substrate
specificities. The mitochondrial ACD's are generally
homotetramers and have an active site glutamate at a
conserved position.
Length = 380
Score = 66.2 bits (162), Expect = 3e-12
Identities = 21/39 (53%), Positives = 32/39 (82%)
Query: 258 EPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANW 296
EPGAGSD+ G++T+AV+ GD+W++NGQK+W + A+W
Sbjct: 125 EPGAGSDLAGLRTRAVRDGDDWVVNGQKIWTSGAHYADW 163
Score = 36.9 bits (86), Expect = 0.010
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Query: 119 FEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAV---GLAQRCLDEATKYALER 173
+DVRVP N + G+K+AM T + R + A L L T+
Sbjct: 211 LDDVRVPDANRVGEVNDGWKVAMTTLNFERVSIGGSAATFFELLLARLLLLTRDGRPL 268
>gnl|CDD|132251 TIGR03207, cyc_hxne_CoA_dh, cyclohexanecarboxyl-CoA dehydrogenase.
Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the
anaerobic degradation of benzoyl-CoA derived from
varioius aromatic compounds, in Rhodopseudomonas
palustris but not Thauera aromatica. The aliphatic
compound cyclohexanecarboxylate, can be converted to the
same intermediate in two steps. The first step is its
ligation to coenzyme A. The second is the action of this
enzyme, cyclohexanecarboxyl-CoA dehydrogenase.
Length = 372
Score = 65.7 bits (160), Expect = 4e-12
Identities = 34/79 (43%), Positives = 48/79 (60%)
Query: 108 GQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEAT 167
GQRA I FE+VRVP +++L EG GF M FD +R + + +A+ LDE
Sbjct: 198 GQRAIGRGSIFFENVRVPADHMLGNEGQGFVQVMQGFDFSRALIGLQVLAVARAALDETW 257
Query: 168 KYALERKAFGVPIAAHQGM 186
+Y ER+AFG P++A QG+
Sbjct: 258 RYVAERQAFGKPLSAFQGV 276
Score = 45.7 bits (108), Expect = 2e-05
Identities = 37/131 (28%), Positives = 57/131 (43%), Gaps = 14/131 (10%)
Query: 1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQEFQAL 60
M FD +R + + +A+ LDE +Y ER+AFG P++A Q L + + + +A
Sbjct: 231 MQGFDFSRALIGLQVLAVARAALDETWRYVAERQAFGKPLSAFQGVSHPLADAETQVEA- 289
Query: 61 ARKFC------REEIIPVAAEHDRTGEYPWGIVKKA----HELGLINGHIPASEQNMGQR 110
AR C ++ +P +E W K A H+ L +GH +M QR
Sbjct: 290 ARLLCLQTLWLKDHGLPHTSE---AAMCKWWAPKLAYDVIHQCLLTHGHGGYDRGDMEQR 346
Query: 111 ASDTRGITFED 121
D G D
Sbjct: 347 LRDVLGFQIGD 357
Score = 39.1 bits (91), Expect = 0.002
Identities = 15/37 (40%), Positives = 25/37 (67%)
Query: 253 AYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWIT 289
A +TEP GSD ++ +A + GD+++LNG+K I+
Sbjct: 117 AIALTEPRGGSDAARLRLRAERDGDDYVLNGEKTSIS 153
Score = 35.7 bits (82), Expect = 0.025
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 50 LNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQ 109
LNE Q AR+F RE I P E D+T +++ E+G I +P +G
Sbjct: 1 LNEDLQALADTARRFARERIAPGFKERDKTRVLDRELMRDMGEMGFIGPELPEEHGGLGM 60
Query: 110 RASDTRGITFEDV 122
G+ E +
Sbjct: 61 -GCLAAGVIHEQI 72
>gnl|CDD|215473 PLN02876, PLN02876, acyl-CoA dehydrogenase.
Length = 822
Score = 62.9 bits (153), Expect = 6e-11
Identities = 31/67 (46%), Positives = 40/67 (59%)
Query: 117 ITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAF 176
I+FE+VRVP +N+LLGEG GF+IA R +G A+R + + AL RKAF
Sbjct: 649 ISFENVRVPAKNILLGEGRGFEIAQGRLGPGRLHHCMRLIGAAERGMQLMVQRALSRKAF 708
Query: 177 GVPIAAH 183
G IA H
Sbjct: 709 GKLIAQH 715
Score = 34.4 bits (79), Expect = 0.085
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 16 VGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQEFQ 58
+G A+R + + AL RKAFG IA H F S+L + + E +
Sbjct: 688 IGAAERGMQLMVQRALSRKAFGKLIAQHGSFLSDLAKCRVELE 730
Score = 34.0 bits (78), Expect = 0.097
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 246 LEASGLGAYCVTEPG-AGSDVNGVKTKAVKKGDEWILNGQKMWITNG 291
LE + +TEP A SD ++ ++GD +++NG K W T+G
Sbjct: 546 LEGKIRSGFAMTEPQVASSDATNIECSIRRQGDSYVINGTKWW-TSG 591
>gnl|CDD|173844 cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases similar to fadE2.
FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA
dehydrogenases (ACAD) catalyze the alpha,beta
dehydrogenation of the corresponding trans-enoyl-CoA by
FAD, which becomes reduced. The reduced form of ACAD is
reoxidized in the oxidative half-reaction by
electron-transferring flavoprotein (ETF), from which the
electrons are transferred to the mitochondrial
respiratory chain coupled with ATP synthesis. The ACAD
family includes the eukaryotic beta-oxidation, as well
as amino acid catabolism enzymes. These enzymes share
high sequence similarity, but differ in their substrate
specificities. ACAD's are generally homotetramers and
have an active site glutamate at a conserved position.
Length = 394
Score = 62.0 bits (151), Expect = 8e-11
Identities = 28/67 (41%), Positives = 40/67 (59%)
Query: 117 ITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAF 176
ITF++VRVP N++LGEG GF+IA R +G A+R L+ + A+ R+AF
Sbjct: 225 ITFDNVRVPASNLILGEGRGFEIAQGRLGPGRIHHCMRLIGAAERALELMCQRAVSREAF 284
Query: 177 GVPIAAH 183
G +A H
Sbjct: 285 GKKLAQH 291
Score = 48.9 bits (117), Expect = 1e-06
Identities = 30/112 (26%), Positives = 46/112 (41%), Gaps = 30/112 (26%)
Query: 211 NVFLVSVSGGLELSVFDGCLVAEEL--------AYGC----TGIMTALEASG-------- 250
N+FL VSG L+ + +AEE + C TG M L G
Sbjct: 57 NLFLPEVSGLSGLTNLEYAYLAEETGRSFFAPEVFNCQAPDTGNMEVLHRYGSEEQKKQW 116
Query: 251 ---------LGAYCVTEPG-AGSDVNGVKTKAVKKGDEWILNGQKMWITNGG 292
A+ +TEP A SD ++ + GD++++NG+K W + G
Sbjct: 117 LEPLLDGKIRSAFAMTEPDVASSDATNIECSIERDGDDYVINGRKWWSSGAG 168
Score = 34.7 bits (80), Expect = 0.056
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 15 AVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQE 56
+G A+R L+ + A+ R+AFG +A H V + +++ E
Sbjct: 263 LIGAAERALELMCQRAVSREAFGKKLAQHGVVAHWIAKSRIE 304
>gnl|CDD|173842 cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogenases similar to
fadE5. Putative acyl-CoA dehydrogenase (ACAD).
Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze
the alpha,beta dehydrogenation of the corresponding
trans-enoyl-CoA by FAD, which becomes reduced. The
reduced form of ACAD is reoxidized in the oxidative
half-reaction by electron-transferring flavoprotein
(ETF), from which the electrons are transferred to the
mitochondrial respiratory chain coupled with ATP
synthesis. The ACD family includes the eukaryotic
beta-oxidation, as well as amino acid catabolism
enzymes. These enzymes share high sequence similarity,
but differ in their substrate specificities. The
mitochondrial ACD's are generally homotetramers and have
an active site glutamate at a conserved position.
Length = 407
Score = 59.3 bits (144), Expect = 6e-10
Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 18/84 (21%)
Query: 226 FDGCLVAEELAYGCTGIMTALEASG-----------------LGAYCVTEPGAGSDVNGV 268
F A G G L A G G C+TEP AGSD+ +
Sbjct: 76 FSRGDAPLMYASGTQGAAATLLAHGTEAQREKWIPRLAEGEWTGTMCLTEPDAGSDLGAL 135
Query: 269 KTKAVKKGD-EWILNGQKMWITNG 291
+TKAV + D W +NG K +I+ G
Sbjct: 136 RTKAVYQADGSWRINGVKRFISAG 159
Score = 46.6 bits (111), Expect = 8e-06
Identities = 25/80 (31%), Positives = 33/80 (41%), Gaps = 5/80 (6%)
Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGE-GAGFKIAMDTFDKTRPPVAAGAVGLAQRC 162
E+ MG S T + F++ + L+GE G G + R V GLA+
Sbjct: 208 EEKMGLHGSPTCELVFDNAKGE----LIGEEGMGLAQMFAMMNGARLGVGTQGTGLAEAA 263
Query: 163 LDEATKYALERKAFGVPIAA 182
A YA ERK G I A
Sbjct: 264 YLNALAYAKERKQGGDLIKA 283
Score = 33.9 bits (78), Expect = 0.095
Identities = 13/32 (40%), Positives = 14/32 (43%)
Query: 11 VAAGAVGLAQRCLDEATKYALERKAFGVPIAA 42
V GLA+ A YA ERK G I A
Sbjct: 252 VGTQGTGLAEAAYLNALAYAKERKQGGDLIKA 283
>gnl|CDD|132248 TIGR03204, pimC_large, pimeloyl-CoA dehydrogenase, large subunit.
Members of this protein family are the PimC proteins of
species such as Rhodopseudomonas palustris and
Bradyrhizobium japonicum. The pimFABCDE operon encodes
proteins for the metabolism of straight chain
dicarboxylates of seven to fourteen carbons. Especially
relevant is pimeloyl-CoA, basis of the gene symbol, as
it is a catabolite of benzoyl-CoA degradation, which
occurs in Rhodopseudomonas palustris.
Length = 395
Score = 57.3 bits (138), Expect = 3e-09
Identities = 24/40 (60%), Positives = 31/40 (77%)
Query: 257 TEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANW 296
+EPG+GSD+ +KTKA KKGD+WI+NGQK W T A+W
Sbjct: 128 SEPGSGSDLASLKTKAEKKGDKWIINGQKTWTTLAQHADW 167
Score = 30.0 bits (67), Expect = 1.7
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
Query: 111 ASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYA 170
+ + F+DV VP EN++ E G+ A R +A VG+++ + A
Sbjct: 207 GVEVNEVFFDDVEVPYENLVGEENKGWDYAKFLLGNERTGIA--RVGVSKERIRRIKDLA 264
Query: 171 LERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLLGV 207
+ ++ G P+ K+ V I + ++L L V
Sbjct: 265 AKVESGGKPVIEDAKFREKLAAVEIELKALELTQLRV 301
>gnl|CDD|183454 PRK12341, PRK12341, putative acyl-CoA dehydrogenase; Provisional.
Length = 381
Score = 55.9 bits (135), Expect = 8e-09
Identities = 26/89 (29%), Positives = 47/89 (52%)
Query: 107 MGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEA 166
+G T + ++V V + +++ EG GF M F+ R AA ++G A+ ++A
Sbjct: 201 IGWHMLSTCEVYLDNVEVEESDLVGEEGMGFLNVMYNFEMERLINAARSLGFAECAFEDA 260
Query: 167 TKYALERKAFGVPIAAHQGMYLKIQYVSI 195
+YA +R FG PI +Q + K+ ++I
Sbjct: 261 ARYANQRIQFGKPIGHNQLIQEKLTLMAI 289
Score = 50.5 bits (121), Expect = 4e-07
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 242 IMTALEASGLGAYC--VTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVA 294
+ +G AY +TEPGAGSD N T +K + LNGQK +IT
Sbjct: 108 TAESTLETGDPAYALALTEPGAGSDNNSATTTYTRKNGKVYLNGQKTFITGAKEY 162
Score = 37.0 bits (86), Expect = 0.010
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQ 44
M F+ R AA ++G A+ ++A +YA +R FG PI +Q
Sbjct: 235 MYNFEMERLINAARSLGFAECAFEDAARYANQRIQFGKPIGHNQ 278
>gnl|CDD|178141 PLN02526, PLN02526, acyl-coenzyme A oxidase.
Length = 412
Score = 50.6 bits (121), Expect = 4e-07
Identities = 20/47 (42%), Positives = 26/47 (55%)
Query: 249 SGLGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVAN 295
+ + +TEP GSD + + T A K WILNGQK WI N A+
Sbjct: 141 DTVACWALTEPDYGSDASSLNTTATKVEGGWILNGQKRWIGNSTFAD 187
Score = 42.9 bits (101), Expect = 1e-04
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCL 163
E +G R I +DV VP E+ L G + F+ +R VA +G++
Sbjct: 219 ENKIGLRMVQNGDIVLKDVFVPDEDRLPGVNS-FQDTNKVLAVSRVMVAWQPIGISMGVY 277
Query: 164 DEATKYALERKAFGVPIAAHQ 184
D +Y ERK FG P+AA Q
Sbjct: 278 DMCHRYLKERKQFGAPLAAFQ 298
Score = 34.8 bits (80), Expect = 0.043
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 7 TRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQEFQALA 61
+R VA +G++ D +Y ERK FG P+AA Q+ +L QA+
Sbjct: 261 SRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQEKLVRMLGNIQAMF 315
Score = 29.8 bits (67), Expect = 1.9
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 50 LNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHI 100
L +Q + R+ +E+ P+ E+ E+P+ I+ K LG+ G I
Sbjct: 29 LTPEEQALRKRVRECMEKEVAPIMTEYWEKAEFPFHIIPKLGSLGIAGGTI 79
>gnl|CDD|179566 PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated.
Length = 380
Score = 48.7 bits (116), Expect = 2e-06
Identities = 30/99 (30%), Positives = 48/99 (48%)
Query: 107 MGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEA 166
+G R ITF+DV + ++++ EG GF + FD R VA G A ++A
Sbjct: 200 LGLRMDSCCEITFDDVELDEKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDA 259
Query: 167 TKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLL 205
+YA +R FG I Q + K +++I ++ ML
Sbjct: 260 ARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLY 298
Score = 39.0 bits (91), Expect = 0.002
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 254 YCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNG 291
+TEPGAGSDV +KT ++ + LNG K +IT+
Sbjct: 122 SAITEPGAGSDVGSLKTTYTRRNGKVYLNGSKCFITSS 159
Score = 33.3 bits (76), Expect = 0.15
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 4 FDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQV 45
FD R VA G A ++A +YA +R FG I Q+
Sbjct: 237 FDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQL 278
>gnl|CDD|173843 cd01154, AidB, Proteins involved in DNA damage response, similar to
the AidB gene product. AidB is one of several genes
involved in the SOS adaptive response to DNA alkylation
damage, whose expression is activated by the Ada
protein. Its function has not been entirely elucidated;
however, it is similar in sequence and function to
acyl-CoA dehydrogenases. It has been proposed that aidB
directly destroys DNA alkylating agents such as
nitrosoguanidines (nitrosated amides) or their reaction
intermediates.
Length = 418
Score = 47.4 bits (113), Expect = 5e-06
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 130 LLG-EGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGM 186
L+G EG G ++ + +R A A+G+ +R L EA YA R+AFG P+ H M
Sbjct: 255 LIGDEGKGIYYILEMLNISRLDNAVAALGIMRRALSEAYHYARHRRAFGKPLIDHPLM 312
Score = 39.7 bits (93), Expect = 0.001
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 14/85 (16%)
Query: 7 TRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQEFQA------- 59
+R A A+G+ +R L EA YA R+AFG P+ H + +L E + + +A
Sbjct: 273 SRLDNAVAALGIMRRALSEAYHYARHRRAFGKPLIDHPLMRRDLAEMEVDVEAATALTFR 332
Query: 60 LARKFCREEIIPVAAEHDRTGEYPW 84
AR F R A D+ E
Sbjct: 333 AARAFDR-------AAADKPVEAHM 350
Score = 31.2 bits (71), Expect = 0.80
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 250 GLGAYCVTEPGAGSDVNGVKTKAVK-KGDEWILNGQKMWITNG 291
LG +TE GSD+ +T A + G + LNG K W +
Sbjct: 147 LLGGTWMTEKQGGSDLGANETTAERSGGGVYRLNGHK-WFASA 188
>gnl|CDD|185635 PTZ00456, PTZ00456, acyl-CoA dehydrogenase; Provisional.
Length = 622
Score = 39.5 bits (92), Expect = 0.002
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 248 ASG--LGAYCVTEPGAGSDVNGVKTKAVKKGD-EWILNGQKMWITNG 291
SG G C+TEP G+D+ VKTKA D + + G K++I+ G
Sbjct: 177 VSGEWSGTMCLTEPQCGTDLGQVKTKAEPSADGSYKITGTKIFISAG 223
>gnl|CDD|173852 cd01163, DszC, Dibenzothiophene (DBT) desulfurization enzyme C.
DszC is a flavin reductase dependent enzyme, which
catalyzes the first two steps of DBT desulfurization in
mesophilic bacteria. DszC converts DBT to DBT-sulfoxide,
which is then converted to DBT-sulfone. Bacteria with
this enzyme are candidates for the removal of organic
sulfur compounds from fossil fuels, which pollute the
environment. An equivalent enzyme tdsC, is found in
thermophilic bacteria. This alignment also contains a
closely related uncharacterized subgroup.
Length = 377
Score = 36.1 bits (84), Expect = 0.017
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 12/85 (14%)
Query: 105 QNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPV-----AAGAVGLA 159
GQR + + +TF++VRV + VL A + + T + AA G+A
Sbjct: 179 DGFGQRLTASGTVTFDNVRVEPDEVLPRPNAPDRGTLLT------AIYQLVLAAVLAGIA 232
Query: 160 QRCLDEATKYALER-KAFGVPIAAH 183
+ LD+A Y R + + A
Sbjct: 233 RAALDDAVAYVRSRTRPWIHSGAES 257
>gnl|CDD|215178 PLN02312, PLN02312, acyl-CoA oxidase.
Length = 680
Score = 35.5 bits (82), Expect = 0.038
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 9/56 (16%)
Query: 252 GAYCVTEPGAGSDVNGVKTKAV--KKGDEWILN-----GQKMWITNGGVANWQNRT 300
G + +TE G GS+V G++T K +E+++N QK WI GG AN T
Sbjct: 187 GCFAMTELGHGSNVRGIETVTTYDPKTEEFVINTPCESAQKYWI--GGAANHATHT 240
Score = 31.3 bits (71), Expect = 0.66
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 16/78 (20%)
Query: 117 ITFEDVRVPKENVL-----LGEGAGFKIAMDTFDKT-----------RPPVAAGAVGLAQ 160
I F+++R+P+EN+L + + A+ D+ R +A A+ ++
Sbjct: 292 IWFDNLRIPRENLLNSVADVSPDGKYVSAIKDPDQRFGAFLAPLTSGRVTIAVSAIYSSK 351
Query: 161 RCLDEATKYALERKAFGV 178
L A +Y+L R+AF V
Sbjct: 352 VGLAIAIRYSLSRRAFSV 369
>gnl|CDD|132247 TIGR03203, pimD_small, pimeloyl-CoA dehydrogenase, small subunit.
Members of this protein family are the PimD proteins of
species such as Rhodopseudomonas palustris,
Bradyrhizobium japonicum. The pimFABCDE operon encodes
proteins for the metabolism of straight chain
dicarboxylates of seven to fourteen carbons. Especially
relevant is pimeloyl-CoA, basis of the gene symbol, as
it is a catabolite of benzoyl-CoA degradation, which
occurs in Rhodopseudomonas palustris.
Length = 378
Score = 34.6 bits (79), Expect = 0.050
Identities = 25/77 (32%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
Query: 108 GQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEAT 167
G A+D ITF V V + + + D R + A AVGL L
Sbjct: 203 GLHAAD---ITFTGVVVGADAAIGDPENALPLIERVVDDARAALCAEAVGLMDESLKTTV 259
Query: 168 KYALERKAFGVPIAAHQ 184
+Y RK FGVPI + Q
Sbjct: 260 EYIKTRKQFGVPIGSFQ 276
Score = 33.8 bits (77), Expect = 0.094
Identities = 18/42 (42%), Positives = 21/42 (50%)
Query: 5 DKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVF 46
D R + A AVGL L +Y RK FGVPI + QV
Sbjct: 237 DDARAALCAEAVGLMDESLKTTVEYIKTRKQFGVPIGSFQVL 278
Score = 33.1 bits (75), Expect = 0.18
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 246 LEASGLGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANW---QNRTRD 302
++ S A+ E + D+ V T A K GD W+++G+K + NG A+ RT+
Sbjct: 114 IDGSKTFAFAQLEKNSRYDLGDVSTTAKKTGDGWVIDGEKFVVLNGETADTLIVTARTKG 173
Query: 303 FRYEKPG 309
R ++ G
Sbjct: 174 ARRDRTG 180
>gnl|CDD|173839 cd01150, AXO, Peroxisomal acyl-CoA oxidase. Peroxisomal acyl-CoA
oxidases (AXO) catalyze the first set in the peroxisomal
fatty acid beta-oxidation, the alpha,beta
dehydrogenation of the corresponding trans-enoyl-CoA by
FAD, which becomes reduced. In a second oxidative
half-reaction, the reduced FAD is reoxidized by
molecular oxygen. AXO is generally a homodimer, but it
has been reported to form a different type of oligomer
in yeast. There are several subtypes of AXO's, based on
substrate specificity. Palmitoyl-CoA oxidase acts on
straight-chain fatty acids and prostanoids; whereas, the
closely related Trihydroxycoprostanoly-CoA oxidase has
the greatest activity for 2-methyl branched side chains
of bile precursors. Pristanoyl-CoA oxidase, acts on
2-methyl branched fatty acids. AXO has an additional
domain, C-terminal to the region with similarity to
acyl-CoA dehydrogenases, which is included in this
alignment.
Length = 610
Score = 32.7 bits (75), Expect = 0.29
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
Query: 252 GAYCVTEPGAGSDVNGVKTKAV--KKGDEWILN-----GQKMWITNGGV 293
G + TE G GS++ G++T A E+++N K W N G
Sbjct: 136 GCFAQTELGHGSNLQGLETTATYDPLTQEFVINTPDFTATKWWPGNLGK 184
>gnl|CDD|219705 pfam08028, Acyl-CoA_dh_2, Acyl-CoA dehydrogenase, C-terminal
domain.
Length = 134
Score = 30.7 bits (70), Expect = 0.38
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 11 VAAGAVGLAQRCLDEATKYALERK--AFGVPIAAHQVFYSELNE 52
AA A+G A+ L + A ER G P+A + L E
Sbjct: 3 FAAPALGAARGALAAFIERARERVRAYGGAPLAEDPATQTRLAE 46
Score = 30.3 bits (69), Expect = 0.58
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 151 VAAGAVGLAQRCLDEATKYALERK--AFGVPIAAHQG 185
AA A+G A+ L + A ER G P+A
Sbjct: 3 FAAPALGAARGALAAFIERARERVRAYGGAPLAEDPA 39
>gnl|CDD|185639 PTZ00460, PTZ00460, acyl-CoA dehydrogenase; Provisional.
Length = 646
Score = 32.1 bits (73), Expect = 0.42
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 27/84 (32%)
Query: 252 GAYCVTEPGAGSDVNGVKTKAV--KKGDEWILN-----GQKMW----------------- 287
G Y TE G GSDV ++T A K+ +E++++ K W
Sbjct: 129 GCYAQTELGHGSDVQNLETTATYDKQTNEFVIHTPSVEAVKFWPGELGFLCNFALVYAKL 188
Query: 288 ITNG---GVANWQNRTRDFRYEKP 308
I NG GV + R RD KP
Sbjct: 189 IVNGKNKGVHPFMVRIRDKETHKP 212
>gnl|CDD|235469 PRK05443, PRK05443, polyphosphate kinase; Provisional.
Length = 691
Score = 30.9 bits (71), Expect = 0.92
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 9/53 (16%)
Query: 20 QRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQEFQALARKFCREEIIPV 72
R +E AL ++ G+ + Y EL+E Q+E+ R++ REEI PV
Sbjct: 104 YRLYNEELLPALAKE--GI----RILRYDELSEAQREW---LREYFREEIFPV 147
>gnl|CDD|236667 PRK10249, PRK10249, phenylalanine transporter; Provisional.
Length = 458
Score = 30.7 bits (69), Expect = 1.1
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 206 GVHNCNVFLVSVSGGLELSVFDGCLVAEELA-------YGCTGIMTALEASGLGAYCVTE 258
G+HN ++ L+++ G + +F G A ++A YG GI+ L LG V E
Sbjct: 22 GLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGPAVLLGYGVAGIIAFLIMRQLGEMVVEE 81
Query: 259 PGAGS 263
P +GS
Sbjct: 82 PVSGS 86
>gnl|CDD|150393 pfam09712, PHA_synth_III_E, Poly(R)-hydroxyalkanoic acid synthase
subunit (PHA_synth_III_E). This entry represents the
PhaE subunit of the heterodimeric class (class III) of
polymerase for poly(R)-hydroxyalkanoic acids (PHAs),
carbon and energy storage polymers of many bacteria. The
most common PHA is polyhydroxybutyrate but about 150
different constituent hydroxyalkanoic acids (HAs) have
been identified in various species.
Length = 293
Score = 29.4 bits (66), Expect = 2.5
Identities = 13/63 (20%), Positives = 19/63 (30%), Gaps = 1/63 (1%)
Query: 2 DTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQEFQALA 61
F P G + + L A G HQ Y L Q E+Q
Sbjct: 120 RMFSSLSPMPGDGLRNMPHQQFRSQLDPFLSMPALG-YTREHQAQYQALIRAQMEYQQAL 178
Query: 62 RKF 64
+++
Sbjct: 179 QEY 181
>gnl|CDD|215342 PLN02636, PLN02636, acyl-coenzyme A oxidase.
Length = 686
Score = 29.4 bits (66), Expect = 2.6
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 16/89 (17%)
Query: 107 MGQRASDTRGITFEDVRVPKENVL-----LGEGAGFKIAMDTFDKT-----------RPP 150
+G D + F VR+P++N+L + + ++ T +K R
Sbjct: 277 VGLNGVDNGALRFRSVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELVGGRVG 336
Query: 151 VAAGAVGLAQRCLDEATKYALERKAFGVP 179
+A G+VG+ + A +Y+L R+ FG P
Sbjct: 337 LAYGSVGVLKASNTIAIRYSLLRQQFGPP 365
Score = 29.1 bits (65), Expect = 3.6
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Query: 252 GAYCVTEPGAGSDVNGVKTKAV--KKGDEWILN-----GQKMWITNGGV 293
G + +TE GS+V G++T A DE+++N K WI N V
Sbjct: 175 GCFAMTELHHGSNVQGLQTTATFDPLTDEFVINTPNDGAIKWWIGNAAV 223
>gnl|CDD|225354 COG2759, MIS1, Formyltetrahydrofolate synthetase [Nucleotide
transport and metabolism].
Length = 554
Score = 29.2 bits (66), Expect = 3.4
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 235 LAYGCTGIMTALEASGLGAYCVTEPGAGSDVNGVK 269
+A+GC I+ A L Y VTE G G+D+ K
Sbjct: 273 IAHGCNSIIATKTALKLADYVVTEAGFGADLGAEK 307
>gnl|CDD|237403 PRK13505, PRK13505, formate--tetrahydrofolate ligase; Provisional.
Length = 557
Score = 29.0 bits (66), Expect = 3.8
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 236 AYGCTGIMTALEASGLGAYCVTEPGAGSDVNGVK 269
A+GC ++ A L Y VTE G G+D+ K
Sbjct: 277 AHGCNSVLATKTALKLADYVVTEAGFGADLGAEK 310
>gnl|CDD|182670 PRK10715, flk, flagella biosynthesis regulator; Provisional.
Length = 335
Score = 28.9 bits (65), Expect = 4.0
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 8/33 (24%)
Query: 84 WGIVKKAHELGLING------HIPASEQNMGQR 110
W ++ H+LGL H PA+EQN+ QR
Sbjct: 54 WAGLR--HDLGLKGDAPLLSRHFPAAEQNLQQR 84
>gnl|CDD|178062 PLN02443, PLN02443, acyl-coenzyme A oxidase.
Length = 664
Score = 28.6 bits (64), Expect = 5.0
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 251 LGAYCVTEPGAGSDVNGVKTKAV--KKGDEWILN 282
+G Y TE G GS+V G++T A K DE++++
Sbjct: 132 IGCYAQTELGHGSNVQGLETTATFDPKTDEFVIH 165
>gnl|CDD|188537 TIGR04022, sulfur_SfnB, sulfur acquisition oxidoreductase, SfnB
family. Members of this protein family belong to the
greater family of acyl-CoA dehydrogenases. This family
includes the sulfate starvation induced protein SfnB of
Pseudomonas putida strain DS1, which is both encoded
nearby to and phylogenetically closely correlated with
the dimethyl sulphone monooxygenase SfnG. This family
shows considerable sequence similarity to the
Rhodococcus dibenzothiophene desulfurization enzyme
DszC, although that enzyme falls outside of the scope of
this family [Central intermediary metabolism, Sulfur
metabolism].
Length = 391
Score = 28.4 bits (64), Expect = 5.0
Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 25/79 (31%)
Query: 107 MGQR--ASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAV-------- 156
GQR AS T + +DVRVP E+V+ FD+ P AAG V
Sbjct: 192 FGQRTTASGT--VLLDDVRVPAEHVV--------PIQRAFDR---PTAAGPVAQIIHAAI 238
Query: 157 --GLAQRCLDEATKYALER 173
G+A+ L + + ER
Sbjct: 239 DAGIARAALADTLAFVRER 257
Score = 28.0 bits (63), Expect = 6.4
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 264 DVNGVKTKAVKKGDEWILNGQKMWITNGGVANW 296
+V +T+ + GD + LNG+K + T A+W
Sbjct: 127 NVLDFQTRLRRDGDGYRLNGRKFYSTGALFAHW 159
>gnl|CDD|183199 PRK11561, PRK11561, isovaleryl CoA dehydrogenase; Provisional.
Length = 538
Score = 28.6 bits (64), Expect = 5.1
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 130 LLG-EGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPI 180
LLG EG G ++ + TR A G+ GL +R A +A +R+ FG P+
Sbjct: 280 LLGEEGEGIRLILKMGGMTRFDCALGSHGLMRRAFSVAIYHAHQRQVFGKPL 331
>gnl|CDD|238266 cd00477, FTHFS, Formyltetrahydrofolate synthetase (FTHFS) catalyzes
the ATP-dependent activation of formate ion via its
addition to the N10 position of tetrahydrofolate. FTHFS
is a highly expressed key enzyme in both the
Wood-Ljungdahl pathway of autotrophic CO2 fixation
(acetogenesis) and the glycine synthase/reductase
pathways of purinolysis. The key physiological role of
this enzyme in acetogens is to catalyze the formylation
of tetrahydrofolate, an initial step in the reduction of
carbon dioxide and other one-carbon precursors to
acetate. In purinolytic organisms, the enzymatic
reaction is reversed, liberating formate from
10-formyltetrahydrofolate with concurrent production of
ATP.
Length = 524
Score = 28.3 bits (64), Expect = 6.2
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 236 AYGCTGIMTALEASGLGAYCVTEPGAGSDVNGVK 269
A+GC I+ A L Y VTE G G+D+ K
Sbjct: 260 AHGCNSIIADKIALKLADYVVTEAGFGADLGAEK 293
>gnl|CDD|173848 cd01159, NcnH, Naphthocyclinone hydroxylase. Naphthocyclinone is
an aromatic polyketide and an antibiotic, which is
active against Gram-positive bacteria. Polyketides are
secondary metabolites, which have important biological
functions such as antitumor, immunosupressive or
antibiotic activities. NcnH is a hydroxylase involved in
the biosynthesis of naphthocyclinone and possibly other
polyketides.
Length = 370
Score = 27.7 bits (62), Expect = 9.5
Identities = 19/85 (22%), Positives = 31/85 (36%), Gaps = 25/85 (29%)
Query: 106 NMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRP---------PV----- 151
+G R + + + +DV VP+ L A D P P+
Sbjct: 171 VVGLRGTGSNTVVVDDVFVPEHRTL--------TAGDMMAGDGPGGSTPVYRMPLRQVFP 222
Query: 152 ---AAGAVGLAQRCLDEATKYALER 173
AA ++G A+ L E + A +R
Sbjct: 223 LSFAAVSLGAAEGALAEFLELAGKR 247
>gnl|CDD|216402 pfam01268, FTHFS, Formate--tetrahydrofolate ligase.
Length = 557
Score = 27.8 bits (63), Expect = 9.7
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 236 AYGCTGIMTALEASGLGAYCVTEPGAGSD 264
A+GC I+ A L Y VTE G G+D
Sbjct: 276 AHGCNSIIATKIALKLADYVVTEAGFGAD 304
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.136 0.411
Gapped
Lambda K H
0.267 0.0617 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,181,766
Number of extensions: 1564601
Number of successful extensions: 1456
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1437
Number of HSP's successfully gapped: 120
Length of query: 312
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 215
Effective length of database: 6,635,264
Effective search space: 1426581760
Effective search space used: 1426581760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.7 bits)