RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10338
(312 letters)
>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron
transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1
e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A*
3mdd_A* 3mde_A*
Length = 396
Score = 154 bits (391), Expect = 4e-44
Identities = 63/82 (76%), Positives = 68/82 (82%)
Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCL 163
E NMGQR SDTRGI FEDV+VPKENVL+G+GAGFK+AM FDK RP VAAGAVGLAQR L
Sbjct: 212 ELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFKVAMGAFDKERPVVAAGAVGLAQRAL 271
Query: 164 DEATKYALERKAFGVPIAAHQG 185
DEATKYALERK FG + HQ
Sbjct: 272 DEATKYALERKTFGKLLVEHQA 293
Score = 122 bits (309), Expect = 2e-32
Identities = 59/105 (56%), Positives = 67/105 (63%), Gaps = 27/105 (25%)
Query: 219 GGLELSVFDGCLVAEELAYGCTGIMTALEASGL--------------------------- 251
GGL L FD CL++EELAYGCTG+ TA+E + L
Sbjct: 71 GGLGLGTFDACLISEELAYGCTGVQTAIEGNSLGQMPIIIAGNDQQKKKYLGRMTEEPLM 130
Query: 252 GAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANW 296
AYCVTEPGAGSDV G+KTKA KKGDE+I+NGQKMWITNGG ANW
Sbjct: 131 CAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANW 175
Score = 83.7 bits (208), Expect = 2e-18
Identities = 36/53 (67%), Positives = 44/53 (83%)
Query: 49 ELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIP 101
E E Q+EFQA ARKF REEIIPVAAE+D+TGEYP ++++A ELGL+N HIP
Sbjct: 15 EFTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWELGLMNTHIP 67
Score = 82.6 bits (205), Expect = 6e-18
Identities = 33/44 (75%), Positives = 34/44 (77%)
Query: 1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQ 44
M FDK RP VAAGAVGLAQR LDEATKYALERK FG + HQ
Sbjct: 249 MGAFDKERPVVAAGAVGLAQRALDEATKYALERKTFGKLLVEHQ 292
>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP:
a.29.3.1 e.6.1.1
Length = 379
Score = 152 bits (386), Expect = 1e-43
Identities = 54/87 (62%), Positives = 63/87 (72%)
Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCL 163
MGQRAS T + FEDV+VP EN L EG GFKIAM T +KTR PVAAG+VG+A+R L
Sbjct: 198 HGKMGQRASGTYELVFEDVKVPVENRLGEEGEGFKIAMQTLNKTRIPVAAGSVGVARRAL 257
Query: 164 DEATKYALERKAFGVPIAAHQGMYLKI 190
DEA KYA ER+AFG PIA Q + K+
Sbjct: 258 DEARKYAKEREAFGEPIANFQAIQFKL 284
Score = 119 bits (300), Expect = 4e-31
Identities = 41/105 (39%), Positives = 55/105 (52%), Gaps = 27/105 (25%)
Query: 219 GGLELSVFDGCLVAEELAYGCTGIMTALEASGL--------------------------- 251
GG+ L + D +V EELAY C GI T AS L
Sbjct: 60 GGMGLKMLDEVIVGEELAYACMGIYTIPMASDLGITPVLLAGTEEQKERFLRPLTEKPAL 119
Query: 252 GAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANW 296
A+ ++EPG GSD +KT+A+++GD ++LNG KMWI+NGG A W
Sbjct: 120 AAFALSEPGNGSDAAALKTRAIRQGDHYVLNGTKMWISNGGEAEW 164
Score = 83.3 bits (207), Expect = 2e-18
Identities = 27/53 (50%), Positives = 38/53 (71%)
Query: 49 ELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIP 101
L E Q++ QALAR+F +E I+PVA E+D E PW +++K HE+GL+N IP
Sbjct: 4 SLTEEQRQLQALARRFAKEVILPVAQEYDEKEEVPWPVIEKLHEVGLLNAIIP 56
Score = 82.2 bits (204), Expect = 7e-18
Identities = 30/44 (68%), Positives = 35/44 (79%)
Query: 1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQ 44
M T +KTR PVAAG+VG+A+R LDEA KYA ER+AFG PIA Q
Sbjct: 235 MQTLNKTRIPVAAGSVGVARRALDEARKYAKEREAFGEPIANFQ 278
>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA
dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A
{Podospora anserina}
Length = 438
Score = 147 bits (372), Expect = 4e-41
Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCL 163
G + + + +VRVP +NVL G G K+A FD + V A VGL +
Sbjct: 230 VATPGHTSVSGPHVRYTNVRVPTKNVLCPAGQGAKVAFGAFDGSAVLVGAMGVGLMRAAF 289
Query: 164 DEATKYALERKAFG-VPIAAHQG 185
D A K+A E G VP+ Q
Sbjct: 290 DAALKFAKEDNRGGAVPLLERQA 312
Score = 113 bits (285), Expect = 1e-28
Identities = 24/120 (20%), Positives = 43/120 (35%), Gaps = 33/120 (27%)
Query: 219 GGLELSVFDGCLVAEELAYGCTGIMTALEASGL--------------------------- 251
GG ++ + ++ EE + A+GL
Sbjct: 69 GGTGGTLIESAILVEECYSVEPSAALTIFATGLGLTPINLAAGPQHAEFLAPFLSGEGSP 128
Query: 252 -GAYCVTEPGAGSDVN-----GVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFRY 305
+ +EPG ++ G +T A +GDEW++NG+KMW TN +++
Sbjct: 129 LASLVFSEPGGVANALEKGAPGFQTTARLEGDEWVINGEKMWATNCAGWDFKGCDLACVV 188
Score = 78.1 bits (193), Expect = 2e-16
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFG-VPIAAHQ 44
FD + V A VGL + D A K+A E G VP+ Q
Sbjct: 267 FGAFDGSAVLVGAMGVGLMRAAFDAALKFAKEDNRGGAVPLLERQ 311
Score = 75.8 bits (187), Expect = 1e-15
Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 7/60 (11%)
Query: 49 ELNETQQEFQALARKFCREEIIPVAAEHDRTG-------EYPWGIVKKAHELGLINGHIP 101
L+ +Q+ AR R ++P + + + A G++ G I
Sbjct: 6 HLSASQKGTYQAARSLARNLLMPARQTYLQHPPNSPLRFQSTQPTYAAAVSAGILKGQIS 65
>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
FDA; 2.10A {Mycobacterium thermoresistibile}
Length = 393
Score = 144 bits (365), Expect = 2e-40
Identities = 36/82 (43%), Positives = 51/82 (62%)
Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCL 163
E+ +G + S T + FE+ R+P + ++ G GFK A+ T D TRP + A AVG+AQ L
Sbjct: 212 ERKLGIKGSPTTELYFENCRIPGDRIIGEPGTGFKTALATLDHTRPTIGAQAVGIAQGAL 271
Query: 164 DEATKYALERKAFGVPIAAHQG 185
D A Y ERK FG P++ +QG
Sbjct: 272 DAAIAYTKERKQFGRPVSDNQG 293
Score = 112 bits (284), Expect = 9e-29
Identities = 32/105 (30%), Positives = 43/105 (40%), Gaps = 27/105 (25%)
Query: 219 GGLELSVFDGCLVAEELAYGCTGIMTALEASGL--------------------------- 251
GG C+V EE+A + L
Sbjct: 74 GGQGADSVATCIVIEEVARVDCSASLIPAVNKLGTMGLILRGSEELKKQVLPAVASGEAM 133
Query: 252 GAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANW 296
+Y ++E AGSD ++T+AV GD+WILNG K WITNGG + W
Sbjct: 134 ASYALSEREAGSDAASMRTRAVADGDDWILNGSKCWITNGGKSTW 178
Score = 77.9 bits (193), Expect = 2e-16
Identities = 14/53 (26%), Positives = 21/53 (39%)
Query: 49 ELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIP 101
+L E + R +EI P AAE D +P + + G H+P
Sbjct: 18 QLPEEHIALREAIRALAEKEIAPYAAEVDEKARFPEEALAALNSSGFSAIHVP 70
Score = 77.2 bits (191), Expect = 4e-16
Identities = 22/44 (50%), Positives = 28/44 (63%)
Query: 1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQ 44
+ T D TRP + A AVG+AQ LD A Y ERK FG P++ +Q
Sbjct: 249 LATLDHTRPTIGAQAVGIAQGALDAAIAYTKERKQFGRPVSDNQ 292
>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA
dehydrogenase, long cell EDGE, FAD, inhibitor,
flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium
oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A*
2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A*
Length = 439
Score = 140 bits (355), Expect = 1e-38
Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 2/84 (2%)
Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFK-IAMDTFDKTRPPVAAGAVGLAQRC 162
+ G + F + VP EN+L G + + F + V A A+G A+
Sbjct: 232 PELAGHITTSGPHTRFTEFHVPHENLLCTPGLKAQGLVETAFAMSAALVGAMAIGTARAA 291
Query: 163 LDEATKYALERKAFGV-PIAAHQG 185
+EA +A G I HQ
Sbjct: 292 FEEALVFAKSDTRGGSKHIIEHQS 315
Score = 109 bits (274), Expect = 3e-27
Identities = 22/114 (19%), Positives = 43/114 (37%), Gaps = 34/114 (29%)
Query: 219 GGLELSVFDGCLVAEELAYGCTGIMTALEASGL--------------------------- 251
GG S+ ++ EEL + A+ L
Sbjct: 67 GGTMESLVHESIILEELFAVEPATSITIVATALGLMPVILCDSPSLQEKFLKPFISGEGE 126
Query: 252 --GAYCVTEPGAGSDVN-----GVKTKAVKKGDEWILNGQKMWITNGGVANWQN 298
+ +EP ++ G++T A K G+EW+++G+K+W +N G +++
Sbjct: 127 PLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKG 180
Score = 77.4 bits (191), Expect = 5e-16
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGV-PIAAHQ 44
F + V A A+G A+ +EA +A G I HQ
Sbjct: 270 ETAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQ 314
Score = 72.0 bits (177), Expect = 2e-14
Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 6/59 (10%)
Query: 49 ELNETQQEFQALARKFCREEIIPVAAEHDRTG------EYPWGIVKKAHELGLINGHIP 101
+L+ +Q E + A+ F + +AE+ + ++A GLI +P
Sbjct: 5 KLSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVP 63
>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA
dehydrogenase, , aldehyde dehydrogenase, oxidoreductase;
HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP:
a.29.3.1 e.6.1.1
Length = 366
Score = 136 bits (344), Expect = 2e-37
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMD-TFDKTRPPVAAGAVGLAQRC 162
+ G RA+ + + VRVP VL G GA + + + R VA G VG+ + C
Sbjct: 181 PKPSGCRAAGHADLHLDQVRVPAGAVLAGSGASLPMLVAASLAYGRKSVAWGCVGILRAC 240
Query: 163 LDEATKYALERKAFGVPIAAHQGMYLKI 190
A +A R+ FG P+ HQ + I
Sbjct: 241 RTAAVAHARTREQFGRPLGDHQLVAGHI 268
Score = 109 bits (274), Expect = 1e-27
Identities = 20/104 (19%), Positives = 39/104 (37%), Gaps = 26/104 (25%)
Query: 219 GGLELSVFDGCLVAEELAYGCTGIMTALEASGL--------------------------G 252
GGL L + + C+ + + + + G+
Sbjct: 48 GGLGLGSRENGEFTAHVGSLCSSLRSVMTSQGMAAWTVQRLGDAGQRATFLKELTSGKLA 107
Query: 253 AYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANW 296
A +E AGSD++ ++T+ GD +++G K+W T A+
Sbjct: 108 AVGFSERQAGSDLSAMRTRVRLDGDTAVVDGHKVWTTAAAYADH 151
Score = 73.7 bits (182), Expect = 5e-15
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQ 44
+ R VA G VG+ + C A +A R+ FG P+ HQ
Sbjct: 219 AASLAYGRKSVAWGCVGILRACRTAAVAHARTREQFGRPLGDHQ 262
Score = 56.0 bits (136), Expect = 4e-09
Identities = 9/40 (22%), Positives = 17/40 (42%)
Query: 62 RKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIP 101
+ + AAE D +GE P ++ + GL+ +
Sbjct: 5 DALLTDLVGDRAAEWDTSGELPRDLLVRLGADGLLCAEVA 44
>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain
acyl-COA dehydrogenase, flavoprotein, oxidoreductase;
HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP:
a.29.3.1 e.6.1.1
Length = 383
Score = 133 bits (336), Expect = 3e-36
Identities = 39/87 (44%), Positives = 53/87 (60%)
Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCL 163
E MG S T + F+DV+VP EN+L EG GFKIAM T D R VAA A+G+A+ L
Sbjct: 203 EDKMGIHTSQTMELVFQDVKVPAENMLGEEGKGFKIAMMTLDGGRIGVAAQALGIAEAAL 262
Query: 164 DEATKYALERKAFGVPIAAHQGMYLKI 190
+A +Y+ +R FG P+ Q + K+
Sbjct: 263 ADAVEYSKQRVQFGKPLCKFQSISFKL 289
Score = 92.2 bits (230), Expect = 2e-21
Identities = 35/110 (31%), Positives = 45/110 (40%), Gaps = 32/110 (29%)
Query: 219 GGLELSVFDG---CLVAEELAYGCTGIMTALE--------------------------AS 249
GG D L EELA G+ L
Sbjct: 60 GGSGDDGGDVLSYILAVEELAKYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVE 119
Query: 250 G--LGAYCVTEPGAGSDVNGVKTKAVKKGD-EWILNGQKMWITNGGVANW 296
G LGA+ +TEP AG+D +G +T A K D + LNG K++ITNGG A+
Sbjct: 120 GTKLGAFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKIFITNGGAADI 169
Score = 71.8 bits (177), Expect = 2e-14
Identities = 14/53 (26%), Positives = 24/53 (45%)
Query: 49 ELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIP 101
L + QQ+F LA F +++ P E D G Y ++ + LG+ +
Sbjct: 4 NLTDIQQDFLKLAHDFGEKKLAPTVTERDHKGIYDKELIDELLSLGITGAYFE 56
Score = 71.8 bits (177), Expect = 2e-14
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQ 44
M T D R VAA A+G+A+ L +A +Y+ +R FG P+ Q
Sbjct: 240 MMTLDGGRIGVAAQALGIAEAALADAVEYSKQRVQFGKPLCKFQ 283
>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid
metabolism, FAD, polymorphism, flavoprotein,
mitochondrion, disease mutation; HET: FAD COS; 1.9A
{Homo sapiens} PDB: 1jqi_A*
Length = 391
Score = 132 bits (335), Expect = 5e-36
Identities = 40/95 (42%), Positives = 53/95 (55%), Gaps = 7/95 (7%)
Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCL 163
E +G R S T + FED R+PK+++L G GFKIAM T D R +A+ A+G+AQ L
Sbjct: 200 EDKLGIRGSSTANLIFEDCRIPKDSILGEPGMGFKIAMQTLDMGRIGIASQALGIAQTAL 259
Query: 164 DEATKYALERKAFGVPIAAHQG-------MYLKIQ 191
D A YA R AFG P+ Q M L ++
Sbjct: 260 DCAVNYAENRMAFGAPLTKLQVIQFKLADMALALE 294
Score = 99.1 bits (248), Expect = 9e-24
Identities = 30/106 (28%), Positives = 41/106 (38%), Gaps = 28/106 (26%)
Query: 219 GGLELSVFDGCLVAEELAYGCTGIMTALE--------------------------ASG-- 250
GG L + EE++ GC + SG
Sbjct: 61 GGAGLDYLAYAIAMEEISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQAWVTPFTSGDK 120
Query: 251 LGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANW 296
+G + ++EPG GSD T A +GD W+LNG K WITN A+
Sbjct: 121 IGCFALSEPGNGSDAGAASTTARAEGDSWVLNGTKAWITNAWEASA 166
Score = 71.4 bits (176), Expect = 3e-14
Identities = 20/44 (45%), Positives = 25/44 (56%)
Query: 1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQ 44
M T D R +A+ A+G+AQ LD A YA R AFG P+ Q
Sbjct: 237 MQTLDMGRIGIASQALGIAQTALDCAVNYAENRMAFGAPLTKLQ 280
Score = 71.0 bits (175), Expect = 5e-14
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 49 ELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIP 101
EL ET Q R F +E+ P+AA+ D+ +P VKK LGL+ +P
Sbjct: 5 ELPETHQMLLQTCRDFAEKELFPIAAQVDKEHLFPAAQVKKMGGLGLLAMDVP 57
>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national
project protein structural and functional analyses; HET:
FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1
PDB: 1ws9_A 2cx9_A*
Length = 387
Score = 131 bits (331), Expect = 2e-35
Identities = 38/87 (43%), Positives = 50/87 (57%)
Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCL 163
E+ +G ASDT + ED+ VP+E +L G GF + D R +AA AVGL Q L
Sbjct: 205 EEKLGLTASDTAQLILEDLFVPEEALLGERGKGFYDVLRVLDGGRIGIAAMAVGLGQAAL 264
Query: 164 DEATKYALERKAFGVPIAAHQGMYLKI 190
D A YA R+AFG PIA +G+ K+
Sbjct: 265 DYALAYAKGREAFGRPIAEFEGVSFKL 291
Score = 99.5 bits (249), Expect = 6e-24
Identities = 35/106 (33%), Positives = 44/106 (41%), Gaps = 28/106 (26%)
Query: 219 GGLELSVFDGCLVAEELAYGCTGIMTALE--------------------------ASG-- 250
GG LS + E +AY + + ASG
Sbjct: 62 GGAGLSTRLFARMVEAIAYYDGALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEA 121
Query: 251 LGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANW 296
LGA+ +TEPG+GSD +KTKA K W LNG K +IT G VA
Sbjct: 122 LGAWGLTEPGSGSDAAALKTKAEKVEGGWRLNGTKQFITQGSVAGV 167
Score = 70.6 bits (174), Expect = 6e-14
Identities = 21/44 (47%), Positives = 25/44 (56%)
Query: 1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQ 44
+ D R +AA AVGL Q LD A YA R+AFG PIA +
Sbjct: 242 LRVLDGGRIGIAAMAVGLGQAALDYALAYAKGREAFGRPIAEFE 285
Score = 70.6 bits (174), Expect = 7e-14
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 49 ELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIP 101
E +++ R+F + E+ P AAE DRTG +PW +V+K E G+ +P
Sbjct: 6 EEGAEERQVLGPFREFLKAEVAPGAAERDRTGAFPWDLVRKLAEFGVFGALVP 58
>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for
infectious disease, S FAD, FADH, tuberculosis,
oxidoredu; HET: FAD; 2.35A {Mycobacterium
thermoresistibile}
Length = 387
Score = 130 bits (330), Expect = 2e-35
Identities = 35/87 (40%), Positives = 46/87 (52%)
Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCL 163
E+ MG A T +++ R+ + + EG G +IA D R +AA A GLAQ L
Sbjct: 207 EEKMGLHAVPTTSAFYDNARIDADRRIGEEGQGLQIAFSALDSGRLGIAAVATGLAQAAL 266
Query: 164 DEATKYALERKAFGVPIAAHQGMYLKI 190
DEA YA ER AFG I HQG+ +
Sbjct: 267 DEAVAYANERTAFGRKIIDHQGLGFLL 293
Score = 99.5 bits (249), Expect = 5e-24
Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 27/105 (25%)
Query: 219 GGLELSVFDGCLVAEELAYGCTGIMTALE-------------------------ASG--L 251
GG V EE+A + A+ SG +
Sbjct: 71 GGGGQPYEVYLQVLEEIAARWASVAVAVSVHSLSSHPLLVFGTEEQKKRWLPGMLSGEQI 130
Query: 252 GAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANW 296
GAY ++EP AGSD ++ A +++NG K WIT+GG A++
Sbjct: 131 GAYSLSEPQAGSDAAALRCAATPTDGGYVINGSKSWITHGGKADF 175
Score = 70.6 bits (174), Expect = 7e-14
Identities = 23/44 (52%), Positives = 24/44 (54%)
Query: 1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQ 44
D R +AA A GLAQ LDEA YA ER AFG I HQ
Sbjct: 244 FSALDSGRLGIAAVATGLAQAALDEAVAYANERTAFGRKIIDHQ 287
Score = 70.2 bits (173), Expect = 8e-14
Identities = 11/53 (20%), Positives = 24/53 (45%)
Query: 49 ELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIP 101
++ E L R+ + + P+ H++ YP G+ ++ GL++ P
Sbjct: 15 LPSQEAAELIELTREIADKVLDPIVDRHEKDETYPEGVFEQLGAAGLLSLPQP 67
>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national
project on protein STR and functional analyses; HET:
FAD; 2.50A {Thermus thermophilus}
Length = 372
Score = 129 bits (328), Expect = 3e-35
Identities = 36/87 (41%), Positives = 49/87 (56%)
Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCL 163
E+ MG A+ T + E+V VP+EN+L EG G A+ D R VAA AVG+A+
Sbjct: 192 EEKMGLHAAHTAEVRLEEVFVPEENLLGEEGRGLAYALAGLDSGRVGVAAQAVGIARGAF 251
Query: 164 DEATKYALERKAFGVPIAAHQGMYLKI 190
+ A YA ER+ FG + HQ + KI
Sbjct: 252 EIAKAYAEEREQFGKKLKEHQAIAFKI 278
Score = 98.7 bits (247), Expect = 8e-24
Identities = 30/106 (28%), Positives = 44/106 (41%), Gaps = 28/106 (26%)
Query: 219 GGLELSVFDGCLVAEELAYGCTGIMTALE--------------------------ASG-- 250
GG+ L L EELA + + A G
Sbjct: 58 GGVGLDSVTWALALEELAAADPSVAVIVSVTSGLPQYMLLRFGSEAQKRRYLVPLARGEW 117
Query: 251 LGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANW 296
+GA+C+TEP AGSD ++ +A + ++LNG K WIT+ G A+
Sbjct: 118 IGAFCLTEPQAGSDAKSLRAEARRVKGGFVLNGVKSWITSAGHAHL 163
Score = 71.0 bits (175), Expect = 4e-14
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 49 ELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIP 101
L + Q+ R+ RE + P+A E+DR EYPW +K ELGL+ P
Sbjct: 2 TLTQEQRLVLDAVRRVAREVLYPLAPEYDRKAEYPWPQLKALAELGLLGMTTP 54
Score = 69.8 bits (172), Expect = 1e-13
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQ 44
+ D R VAA AVG+A+ + A YA ER+ FG + HQ
Sbjct: 229 LAGLDSGRVGVAAQAVGIARGAFEIAKAYAEEREQFGKKLKEHQ 272
>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion,
oxidoreductase, transit peptide, fatty acid metabolism,
FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens}
Length = 404
Score = 130 bits (329), Expect = 4e-35
Identities = 34/87 (39%), Positives = 51/87 (58%)
Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCL 163
E +G RAS T +TFE+V+VP+ N+L G G+K A+ + ++ R +AA +GLAQ C
Sbjct: 222 ENKLGLRASSTCPLTFENVKVPEANILGQIGHGYKYAIGSLNEGRIGIAAQMLGLAQGCF 281
Query: 164 DEATKYALERKAFGVPIAAHQGMYLKI 190
D Y ER FG + QG+ ++
Sbjct: 282 DYTIPYIKERIQFGKRLFDFQGLQHQV 308
Score = 97.2 bits (243), Expect = 5e-23
Identities = 32/105 (30%), Positives = 45/105 (42%), Gaps = 27/105 (25%)
Query: 219 GGLELSVFDGCLVAEELAYGC--TGIMTA-------------------------LEASGL 251
GG S LV EELA + L +
Sbjct: 84 GGTGASFLSTVLVIEELAKVDASVAVFCEIQNTLINTLIRKHGTEEQKATYLPQLTTEKV 143
Query: 252 GAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANW 296
G++C++E GAGSD +KT+A K+GD ++LNG KMWI++ A
Sbjct: 144 GSFCLSEAGAGSDSFALKTRADKEGDYYVLNGSKMWISSAEHAGL 188
Score = 67.6 bits (166), Expect = 7e-13
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQ 44
+ + ++ R +AA +GLAQ C D Y ER FG + Q
Sbjct: 259 IGSLNEGRIGIAAQMLGLAQGCFDYTIPYIKERIQFGKRLFDFQ 302
Score = 67.2 bits (165), Expect = 9e-13
Identities = 8/53 (15%), Positives = 24/53 (45%)
Query: 49 ELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIP 101
+ + ++ +KF +E+I P+ + D + +++ + GL+ +
Sbjct: 28 TFTDEEMMIKSSVKKFAQEQIAPLVSTMDENSKMEKSVIQGLFQQGLMGIEVD 80
>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET:
FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A*
Length = 397
Score = 128 bits (325), Expect = 1e-34
Identities = 38/92 (41%), Positives = 52/92 (56%), Gaps = 7/92 (7%)
Query: 107 MGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEA 166
+G AS T + ++V+VPKEN+L G G +I + + TR AAG VGLAQ CLD A
Sbjct: 205 LGSHASPTGELFLDNVKVPKENILGKPGDGARIVFGSLNHTRLSAAAGGVGLAQACLDAA 264
Query: 167 TKYALERKAFGVPIAAHQG-------MYLKIQ 191
KY ER+ FG PI Q M ++++
Sbjct: 265 IKYCNERRQFGKPIGDFQMNQDMIAQMAVEVE 296
Score = 94.1 bits (235), Expect = 5e-22
Identities = 31/105 (29%), Positives = 44/105 (41%), Gaps = 28/105 (26%)
Query: 220 GLELSVFDGCLVAEELAYGCTGIMTALEA--------------------------SG--L 251
G++ +V EE+A G + + L S L
Sbjct: 64 GMDQGWLAAMIVTEEIARGSSALRVQLNMEVLGCAYTILTYGSEALKKKYVPKLSSAEFL 123
Query: 252 GAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANW 296
G + +TEP AGSDV + + A KGD W+LNG K WI+N A+
Sbjct: 124 GGFGITEPDAGSDVMAMSSTAEDKGDHWLLNGSKTWISNAAQADV 168
Score = 68.7 bits (169), Expect = 3e-13
Identities = 23/44 (52%), Positives = 26/44 (59%)
Query: 1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQ 44
+ + TR AAG VGLAQ CLD A KY ER+ FG PI Q
Sbjct: 239 FGSLNHTRLSAAAGGVGLAQACLDAAIKYCNERRQFGKPIGDFQ 282
Score = 59.9 bits (146), Expect = 3e-10
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 49 ELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPW-GIVKKAHELGLINGHIP 101
L++ Q Q R F ++I+P A + D +P+ V+ ELG IP
Sbjct: 4 NLSKELQMLQKEVRNFVNKKIVPFADQWDNENHFPYEEAVRPMGELGFFGTVIP 57
>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial;
flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC;
1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1
Length = 393
Score = 127 bits (321), Expect = 5e-34
Identities = 27/87 (31%), Positives = 45/87 (51%)
Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCL 163
E+ +G + TR + FED VP N + EG GF IA+ + R +A+ ++G A +
Sbjct: 211 EKKVGWNSQPTRAVIFEDCAVPVANRIGSEGQGFLIAVRGLNGGRINIASCSLGAAHASV 270
Query: 164 DEATKYALERKAFGVPIAAHQGMYLKI 190
+ RK FG P+A++Q + +
Sbjct: 271 ILTRDHLNVRKQFGEPLASNQYLQFTL 297
Score = 101 bits (253), Expect = 2e-24
Identities = 32/105 (30%), Positives = 46/105 (43%), Gaps = 27/105 (25%)
Query: 219 GGLELSVFDGCLVAEELAYGCTGIMTALE-------------------------ASG--L 251
GG LS D ++ E LA GCT + +
Sbjct: 74 GGSGLSRLDTSVIFEALATGCTSTTAYISIHNMCAWMIDSFGNEEQRHKFCPPLCTMEKF 133
Query: 252 GAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANW 296
+YC+TEPG+GSD + T A K+GD +ILNG K +I+ G ++
Sbjct: 134 ASYCLTEPGSGSDAASLLTSAKKQGDHYILNGSKAFISGAGESDI 178
Score = 67.6 bits (166), Expect = 7e-13
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 49 ELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIP 101
LNE Q+EFQ +A F E+ P AE D+ +P +++KA +LG +I
Sbjct: 18 GLNEEQKEFQKVAFDFAAREMAPNMAEWDQKELFPVDVMRKAAQLGFGGVYIQ 70
Score = 66.0 bits (162), Expect = 2e-12
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQ 44
+ + R +A+ ++G A + + RK FG P+A++Q
Sbjct: 248 VRGLNGGRINIASCSLGAAHASVILTRDHLNVRKQFGEPLASNQ 291
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na
project on protein structural and functional analyses;
HET: FAD; 2.30A {Thermus thermophilus}
Length = 577
Score = 128 bits (323), Expect = 2e-33
Identities = 42/105 (40%), Positives = 59/105 (56%), Gaps = 4/105 (3%)
Query: 86 IVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFD 145
+V++ GL G E+ MG +AS TR + EDV+VP ENVL G G KIA + +
Sbjct: 206 LVERDTP-GLSFG---PEEKKMGIKASSTRQVILEDVKVPVENVLGEIGKGHKIAFNVLN 261
Query: 146 KTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKI 190
R + AGAVG A+R L+ + +YA +R FG PI + K+
Sbjct: 262 VGRYKLGAGAVGGAKRALELSAQYATQRVQFGRPIGRFGLIQQKL 306
Score = 95.1 bits (237), Expect = 5e-22
Identities = 38/107 (35%), Positives = 51/107 (47%), Gaps = 31/107 (28%)
Query: 219 GGLELSVFDGCLVAEELAY--------------GCTGIM------------TALEASG-- 250
GGL+L +VAEEL+ G ++ L ASG
Sbjct: 84 GGLDLPKVISTVVAEELSGSGGFSVTYGAHTSIGTLPLVYFGTEEQKRKYLPKL-ASGEW 142
Query: 251 LGAYCVTEPGAGSDVNGVKTKAV--KKGDEWILNGQKMWITNGGVAN 295
+ AYC+TEPG+GSD KT+A + G +ILNG K WI+N G A+
Sbjct: 143 IAAYCLTEPGSGSDALAAKTRATLSEDGKHYILNGVKQWISNAGFAH 189
Score = 65.0 bits (159), Expect = 5e-12
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQ 44
+ + R + AGAVG A+R L+ + +YA +R FG PI
Sbjct: 257 FNVLNVGRYKLGAGAVGGAKRALELSAQYATQRVQFGRPIGRFG 300
Score = 63.9 bits (156), Expect = 1e-11
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 42 AHQVFYSE-LNETQQEFQALARKFCREEIIPVAAEHDRTG-EYPWGIVKKAHELGLINGH 99
+V+ E +E+ +E R F E++P+ + E +++KA ELGL+
Sbjct: 19 PERVYTPEDFDESVKEIARTTRTFVEREVLPLLERMEHGELELNVPLMRKAGELGLLAID 78
Query: 100 IP 101
+P
Sbjct: 79 VP 80
>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA
dehydrogenase, flavoprotein, isovaleric acidemia; HET:
FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1
Length = 394
Score = 124 bits (313), Expect = 7e-33
Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 7/95 (7%)
Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCL 163
+G R S+T + FED ++P N+L E G + M D R +A G +GL Q L
Sbjct: 211 LDKLGMRGSNTCELIFEDCKIPAANILGHENKGVYVLMSGLDLERLVLAGGPLGLMQAVL 270
Query: 164 DEATKYALERKAFGVPIAAHQG-------MYLKIQ 191
D Y R+AFG I Q MY ++
Sbjct: 271 DHTIPYLHVREAFGQKIGHFQLMQGKMADMYTRLM 305
Score = 94.1 bits (235), Expect = 5e-22
Identities = 36/105 (34%), Positives = 48/105 (45%), Gaps = 28/105 (26%)
Query: 219 GGLELSVFDGCLVAEELAYGCTGIMTALEA--------------------------SG-- 250
GG L + LV EE++ + + A SG
Sbjct: 70 GGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEY 129
Query: 251 LGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVAN 295
+GA ++EP AGSDV +K KA KKG+ +ILNG K WITNG A+
Sbjct: 130 IGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPDAD 174
Score = 64.8 bits (159), Expect = 5e-12
Identities = 17/44 (38%), Positives = 20/44 (45%)
Query: 1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQ 44
M D R +A G +GL Q LD Y R+AFG I Q
Sbjct: 248 MSGLDLERLVLAGGPLGLMQAVLDHTIPYLHVREAFGQKIGHFQ 291
Score = 58.3 bits (142), Expect = 9e-10
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 49 ELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWG--IVKKAHELGLINGHIPASEQ 105
L+E Q++ + KF +E + P A E DR+ E+ K+ LG++ I A Q
Sbjct: 12 GLSEEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLG--ITAPVQ 68
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural
genomics of infec diseases, csgid, alpha-structure,
beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus
anthracis}
Length = 597
Score = 126 bits (318), Expect = 9e-33
Identities = 36/105 (34%), Positives = 55/105 (52%), Gaps = 4/105 (3%)
Query: 86 IVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFD 145
IV+K + G+ E+ MG + S TR + ED VPKEN+L G G IA + +
Sbjct: 211 IVEKDYA-GVSTSPE---EKKMGIKCSSTRTLILEDALVPKENLLGEIGKGHIIAFNILN 266
Query: 146 KTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKI 190
R + G VG A+R ++ + +YA +R+ F PIA + K+
Sbjct: 267 IGRYKLGVGTVGSAKRAVEISAQYANQRQQFKQPIARFPLIQEKL 311
Score = 95.9 bits (239), Expect = 3e-22
Identities = 35/107 (32%), Positives = 48/107 (44%), Gaps = 31/107 (28%)
Query: 219 GGLELSVFDGCLVAEELAYGC---------TGI-----------------MTALEASG-- 250
GG+ L L+AE+ + GI + L A+G
Sbjct: 89 GGIGLDKVSSALIAEKFSRAGGFAITHGAHVGIGSLPIVLFGNEEQKKKYLPLL-ATGEK 147
Query: 251 LGAYCVTEPGAGSDVNGVKTKAV--KKGDEWILNGQKMWITNGGVAN 295
L AY +TEPG+GSD G KT A +G ++LNG+K WITN A+
Sbjct: 148 LAAYALTEPGSGSDALGAKTTARLNAEGTHYVLNGEKQWITNSAFAD 194
Score = 64.3 bits (157), Expect = 1e-11
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQ 44
+ + R + G VG A+R ++ + +YA +R+ F PIA
Sbjct: 262 FNILNIGRYKLGVGTVGSAKRAVEISAQYANQRQQFKQPIARFP 305
Score = 60.4 bits (147), Expect = 2e-10
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 40 IAAHQVFYSE-LNETQQEFQALARKFCREEIIPVAAEHDRT-GEYPWGIVKKAHELGLIN 97
I QVF E + + F E++P ++ + ++K+A ELGL+
Sbjct: 22 ITIDQVFTPEDFSSEHKMIAKTTEDFIVNEVLPELEYLEQHEFDRSVRLLKEAGELGLLG 81
Query: 98 GHIP 101
+P
Sbjct: 82 ADVP 85
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid
metabolism, transit peptide, disease mutation, LI
metabolism, coenzyme A dehydrogenase; HET: FAD TH3;
1.45A {Homo sapiens} PDB: 3b96_A*
Length = 607
Score = 124 bits (314), Expect = 4e-32
Identities = 35/105 (33%), Positives = 55/105 (52%), Gaps = 4/105 (3%)
Query: 86 IVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFD 145
+V++ G+ +G E+ MG +AS+T + F+ VRVP ENVL G+GFK+AM +
Sbjct: 235 VVERGFG-GITHGPP---EKKMGIKASNTAEVFFDGVRVPSENVLGEVGSGFKVAMHILN 290
Query: 146 KTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKI 190
R +AA G + + +A +A R FG I + K+
Sbjct: 291 NGRFGMAAALAGTMRGIIAKAVDHATNRTQFGEKIHNFGLIQEKL 335
Score = 94.0 bits (234), Expect = 1e-21
Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 30/107 (28%)
Query: 219 GGLELSVFDGCLVAEELAYGCTGIMTALE--------------------------ASG-- 250
GG+ L + E + G+ L ASG
Sbjct: 103 GGVGLCNTQYARLVEIVGMHDLGVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGET 162
Query: 251 LGAYCVTEPGAGSDVNGVKTKAVKK--GDEWILNGQKMWITNGGVAN 295
+ A+C+TEP +GSD ++T AV G + LNG K+WI+NGG+A+
Sbjct: 163 VAAFCLTEPSSGSDAASIRTSAVPSPCGKYYTLNGSKLWISNGGLAD 209
Score = 62.0 bits (151), Expect = 6e-11
Identities = 11/44 (25%), Positives = 17/44 (38%)
Query: 1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQ 44
M + R +AA G + + +A +A R FG I
Sbjct: 286 MHILNNGRFGMAAALAGTMRGIIAKAVDHATNRTQFGEKIHNFG 329
Score = 51.2 bits (123), Expect = 2e-07
Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 2/58 (3%)
Query: 44 QVFYSELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIP 101
V E + +E +F E P A++D + ELG +P
Sbjct: 44 SVLNEEQTQFLKELVEPVSRFFEEVNDP--AKNDALEMVEETTWQGLKELGAFGLQVP 99
>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics,
seattle structural genomics CEN infectious disease,
oxidoreductase; HET: FAO; 1.70A {Mycobacterium
smegmatis} PDB: 3oib_A*
Length = 403
Score = 118 bits (299), Expect = 6e-31
Identities = 30/79 (37%), Positives = 41/79 (51%)
Query: 107 MGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEA 166
MG R+SDT +++ DVRVP N++ E GF F R +A A AQRCLD
Sbjct: 223 MGWRSSDTAELSYTDVRVPVANLVGSENTGFAQIAAAFVAERVGLATQAYAGAQRCLDLT 282
Query: 167 TKYALERKAFGVPIAAHQG 185
++ R FG P+ + Q
Sbjct: 283 VEWCRNRDTFGRPLISRQA 301
Score = 94.1 bits (235), Expect = 5e-22
Identities = 28/106 (26%), Positives = 43/106 (40%), Gaps = 29/106 (27%)
Query: 219 GGLELSVFDGCLVAEELAYGCTGIMTALE---------------------------ASG- 250
GG D ++ EE+ Y + G
Sbjct: 81 GGSGGDGADPVVICEEMHYAGSPGGVYASLFTCGIAVPHMIASGDQRLIDTYVRPTLRGE 140
Query: 251 -LGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVAN 295
+GA +TEPG GSDV ++T+A GD +++NG K +IT+G A+
Sbjct: 141 KIGALAITEPGGGSDVGHLRTRADLDGDHYVINGAKTYITSGVRAD 186
Score = 63.3 bits (155), Expect = 2e-11
Identities = 20/78 (25%), Positives = 28/78 (35%), Gaps = 5/78 (6%)
Query: 1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQEFQAL 60
F R +A A AQRCLD ++ R FG P+ + Q + L +
Sbjct: 257 AAAFVAERVGLATQAYAGAQRCLDLTVEWCRNRDTFGRPLISRQAVQNTLAGMARRIDV- 315
Query: 61 ARKFCREEIIPVAAEHDR 78
AR + R V
Sbjct: 316 ARVYTRH----VVERQLA 329
Score = 56.4 bits (137), Expect = 4e-09
Identities = 17/53 (32%), Positives = 26/53 (49%)
Query: 49 ELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIP 101
++ + R F E++P A E +R GE P + +KA ELGL+ P
Sbjct: 25 WTTAEREALRKTVRAFAEREVLPHAHEWERAGEIPRELHRKAAELGLLGAGFP 77
>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics,
seattle structural genomics CEN infectious disease,
oxidoreductase; HET: FDA; 2.50A {Mycobacterium
abscessus}
Length = 403
Score = 118 bits (299), Expect = 8e-31
Identities = 33/79 (41%), Positives = 43/79 (54%)
Query: 107 MGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEA 166
MG R SDT ++F DVRVP +N++ E +GF M F R +A A A R LD A
Sbjct: 226 MGWRCSDTAELSFVDVRVPADNLVGAENSGFLQIMQQFQAERLGIAVQAYATAGRALDLA 285
Query: 167 TKYALERKAFGVPIAAHQG 185
+A ER+ FG P+ Q
Sbjct: 286 KSWARERETFGRPLTGRQI 304
Score = 95.3 bits (238), Expect = 2e-22
Identities = 35/106 (33%), Positives = 52/106 (49%), Gaps = 29/106 (27%)
Query: 219 GGLELSVFDGCLVAEELAY--GCTGIMTALE-------------------------ASG- 250
GG + D LV E + G TG+ AL +G
Sbjct: 84 GGSGGNAIDSALVTEAILAAGGSTGVCAALFTHGIALPHIAANGSDALIERYVRPTLAGK 143
Query: 251 -LGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVAN 295
+G+ VTEPGAGSDV ++T+AV++GD +++NG K +IT+G A+
Sbjct: 144 MIGSLGVTEPGAGSDVANLRTRAVREGDTYVVNGAKTFITSGVRAD 189
Score = 62.9 bits (154), Expect = 2e-11
Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 5/78 (6%)
Query: 1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQEFQAL 60
M F R +A A A R LD A +A ER+ FG P+ Q+ +L E ++
Sbjct: 260 MQQFQAERLGIAVQAYATAGRALDLAKSWARERETFGRPLTGRQIIRHKLAEMARQVDV- 318
Query: 61 ARKFCREEIIPVAAEHDR 78
A + R V
Sbjct: 319 ACTYTRA----VMQRWLA 332
Score = 54.5 bits (132), Expect = 1e-08
Identities = 16/52 (30%), Positives = 23/52 (44%)
Query: 50 LNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIP 101
++ +AR F EI P AE + GE P + A E+GL+ P
Sbjct: 29 TTPERRALSQMARSFVEREIAPKLAEWEHVGEIPRDLHLNAAEVGLLGIGFP 80
>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase
family, kijanose, kijani FAD, flavoprotein; HET: TYD;
2.05A {Actinomadura kijaniata}
Length = 439
Score = 117 bits (294), Expect = 5e-30
Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 4/92 (4%)
Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFK--IAMDTFDKTRPPVAAGAVGLAQR 161
+G RAS T I F+D +P ++VL+ + G + + + V VG+AQ
Sbjct: 214 WDGLGMRASGTVDIVFDDCPIPADHVLMRDPVGARNDAVLAGQTVSSVSVLGVYVGVAQA 273
Query: 162 CLDEATKYALERKAFGVPIAAHQ--GMYLKIQ 191
D A R A + ++
Sbjct: 274 AYDTAVAALERRPEPPQAAALTLVAEIDSRLY 305
Score = 85.4 bits (212), Expect = 8e-19
Identities = 16/107 (14%), Positives = 27/107 (25%), Gaps = 29/107 (27%)
Query: 219 GGLEL-SVFDGCLVAEELAYGCTGIMTALEASG--------------------------- 250
GGL + ++D + +A AL
Sbjct: 74 GGLGVDRLYDVAVALLAVARADASTALALHMQLSRGLTLGYEWRHGDERARTLAERILRG 133
Query: 251 -LGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANW 296
+ V G V T W+L+G+K ++ V
Sbjct: 134 MVAGDAVVCSGIKDHHTAVTTLRPDGAGGWLLSGRKTLVSMAPVGTH 180
Score = 63.5 bits (155), Expect = 2e-11
Identities = 14/83 (16%), Positives = 22/83 (26%), Gaps = 3/83 (3%)
Query: 1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQV--FYSELNETQQEFQ 58
+ + V VG+AQ D A R A V S L +
Sbjct: 253 LAGQTVSSVSVLGVYVGVAQAAYDTAVAALERRPEPPQAAALTLVAEIDSRLYALRATAG 312
Query: 59 ALARKFCREEIIPVAAEHDRTGE 81
+ ++ + D G
Sbjct: 313 SALTA-ADALSADLSGDMDERGR 334
Score = 55.4 bits (134), Expect = 9e-09
Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Query: 46 FYSELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIP 101
Y+ + + I AAEHDR G +P + GL+ +P
Sbjct: 16 LYAPVTPAGRVLLDRLAAHL-PRIRSTAAEHDRDGTFPTDTFDALRKDGLMGATVP 70
>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas
oxidoreductase; 3.15A {Micromonospora carbonacea}
Length = 395
Score = 115 bits (290), Expect = 1e-29
Identities = 18/94 (19%), Positives = 32/94 (34%), Gaps = 8/94 (8%)
Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLG--EGAGFKIAMDTFDKTRPPVAAGAVGLAQR 161
+G RAS T + F+ V + +L GA + + + G+AQ
Sbjct: 203 WDGLGMRASGTLEVVFDRCPVRADELLERGPVGARRDAVLAGQTVSSITMLGIYAGIAQA 262
Query: 162 CLDEATKYALERKAFGVPIAAHQG----MYLKIQ 191
D A + R P A + + ++
Sbjct: 263 ARDIAVGFCAGRGGE--PRAGARALVAGLDTRLY 294
Score = 69.2 bits (170), Expect = 2e-13
Identities = 21/107 (19%), Positives = 33/107 (30%), Gaps = 29/107 (27%)
Query: 219 GGLEL-SVFDGCLVAEELAYGCTG---IMTALEASGLGAYCVTEPG-------------- 260
GGL L ++D LA + GL + G
Sbjct: 63 GGLGLTRLYDVATALMRLAEADASTALAWHVQLSRGLTLTYEWQHGTPPVRAMAERLLRA 122
Query: 261 ----------AGSDVNGVKTKAVKKG-DEWILNGQKMWITNGGVANW 296
A D GV T+ G W+L+G+K+ ++ +A
Sbjct: 123 MAEGEAAVCGALKDAPGVVTELHSDGAGGWLLSGRKVLVSMAPIATH 169
Score = 61.9 bits (151), Expect = 6e-11
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 46 FYSELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIP 101
+ L + L I AA+ DRTG +P ++ +LGL+ +P
Sbjct: 5 LRAPLTPAGRTVVDLLAGVI-PRISAEAADRDRTGTFPVEAFEQFAKLGLMGATVP 59
Score = 58.0 bits (141), Expect = 9e-10
Identities = 8/44 (18%), Positives = 14/44 (31%), Gaps = 2/44 (4%)
Query: 1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQ 44
+ + + G+AQ D A + R P A +
Sbjct: 242 LAGQTVSSITMLGIYAGIAQAARDIAVGFCAGRGGE--PRAGAR 283
>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening,
optimization, protein crystallization, structural
genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei
1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A
Length = 396
Score = 114 bits (287), Expect = 4e-29
Identities = 39/109 (35%), Positives = 57/109 (52%), Gaps = 4/109 (3%)
Query: 100 IPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLA 159
PA +G RAS T I ++ VP+EN +L G + + R +A GA+G A
Sbjct: 208 APAIHGKVGLRASITGEIVLDEAFVPEEN-ILPHVKGLRGPFTCLNSARYGIAWGALGAA 266
Query: 160 QRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLLGVH 208
+ C A +Y L+RK FG P+AA+Q + K+ + + EI L L GV
Sbjct: 267 ESCWHIARQYVLDRKQFGRPLAANQLIQKKL---ADMQTEITLGLQGVL 312
Score = 89.2 bits (222), Expect = 3e-20
Identities = 33/132 (25%), Positives = 50/132 (37%), Gaps = 38/132 (28%)
Query: 196 FEREI-----QLMLLGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGI-------- 242
+ I ++ LLG + GG L L+A E+ +G
Sbjct: 51 TDAAIFREMGEIGLLGPT-----IPEQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQS 105
Query: 243 ---MTALE---------------ASG--LGAYCVTEPGAGSDVNGVKTKAVKKGDEWILN 282
M + A+G +G + +TEP GSD + T+A K + L+
Sbjct: 106 SLVMVPIFEFGSDAQKEKYLPKLATGEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLS 165
Query: 283 GQKMWITNGGVA 294
G KMWITN +A
Sbjct: 166 GSKMWITNSPIA 177
Score = 62.6 bits (153), Expect = 3e-11
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQ 44
+ R +A GA+G A+ C A +Y L+RK FG P+AA+Q
Sbjct: 248 FTCLNSARYGIAWGALGAAESCWHIARQYVLDRKQFGRPLAANQ 291
Score = 59.5 bits (145), Expect = 3e-10
Identities = 11/54 (20%), Positives = 24/54 (44%)
Query: 48 SELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIP 101
+L + ++ + A + + ++ P E R I ++ E+GL+ IP
Sbjct: 17 QQLADDERMVRDAAHAYAQGKLAPRVTEAFRHETTDAAIFREMGEIGLLGPTIP 70
>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA
structural genomics, PSI, protein structure initiative;
HET: FAD; 1.80A {Geobacillus kaustophilus}
Length = 385
Score = 113 bits (286), Expect = 4e-29
Identities = 26/79 (32%), Positives = 38/79 (48%)
Query: 107 MGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEA 166
+G A DT + F+D +VP N+L EG GF M+ + R VA A A+
Sbjct: 208 VGLHAQDTAELFFQDAKVPAYNLLGEEGKGFYYLMEKLQQERLVVAIAAQTAAEVMFSLT 267
Query: 167 TKYALERKAFGVPIAAHQG 185
+Y +R AFG ++ Q
Sbjct: 268 KQYVKQRTAFGKRVSEFQT 286
Score = 91.4 bits (228), Expect = 4e-21
Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 27/104 (25%)
Query: 219 GGLELSVFDGCLVAEELAY-GCTGIMTALE------------------------ASG--L 251
GGL ++ EEL G + + L +G +
Sbjct: 65 GGLNADFAYSVVINEELEKVGSSLVGIGLHNDIVTPYIASYGTEEQKQKWLPKCVTGELI 124
Query: 252 GAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVAN 295
A +TEPGAGSD+ + T AVK GD +I+NGQK +ITNG A+
Sbjct: 125 TAIAMTEPGAGSDLANISTTAVKDGDYYIVNGQKTFITNGIHAD 168
Score = 58.3 bits (142), Expect = 7e-10
Identities = 12/45 (26%), Positives = 19/45 (42%)
Query: 1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQV 45
M+ + R VA A A+ +Y +R AFG ++ Q
Sbjct: 242 MEKLQQERLVVAIAAQTAAEVMFSLTKQYVKQRTAFGKRVSEFQT 286
Score = 53.3 bits (129), Expect = 3e-08
Identities = 14/52 (26%), Positives = 21/52 (40%)
Query: 50 LNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIP 101
L E F+A RKF +E P + ++ G P K E G + +
Sbjct: 10 LREEHHMFRAAFRKFLEKEAYPHYNDWEKRGIIPRSFWAKMGENGFLCPWVD 61
>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase,
mycobacerium smegmatis, S genomics; HET: FDA; 1.45A
{Mycobacterium smegmatis}
Length = 399
Score = 111 bits (281), Expect = 2e-28
Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 4/109 (3%)
Query: 100 IPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLA 159
+ + RAS T + ++VR+P L G + ++ R + GA+G A
Sbjct: 210 ANEIHRKLSLRASVTSELVLDNVRLPASA-QLPLAEGLSAPLSCLNEARFGIVFGALGAA 268
Query: 160 QRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLLGVH 208
+ L+ Y R+ F P++ +Q K+ + E+ +L
Sbjct: 269 RDSLETTIAYTQSREVFDKPLSNYQLTQEKL---ANMTVELGKGMLLAI 314
Score = 88.0 bits (219), Expect = 7e-20
Identities = 36/132 (27%), Positives = 55/132 (41%), Gaps = 39/132 (29%)
Query: 196 FEREI-----QLMLLGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTALE--- 247
E+ L +LG+H + G + L EL G +G + +
Sbjct: 58 LPSELAKEFGNLGVLGMH------LQGYGCAGTNAVSYGLACMELEAGDSGFRSFVSVQG 111
Query: 248 -----------------------ASG--LGAYCVTEPGAGSDVNGVKTKAVKKGDEWILN 282
A+G +G + +TEP GS+ G++T+A + G +WILN
Sbjct: 112 SLSMFSIYRYGSEEQKNEWLPRLAAGDAIGCFGLTEPDFGSNPAGMRTRARRDGSDWILN 171
Query: 283 GQKMWITNGGVA 294
G KMWITNG +A
Sbjct: 172 GTKMWITNGNLA 183
Score = 61.8 bits (151), Expect = 5e-11
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQ 44
+ ++ R + GA+G A+ L+ Y R+ F P++ +Q
Sbjct: 250 LSCLNEARFGIVFGALGAARDSLETTIAYTQSREVFDKPLSNYQ 293
Score = 58.4 bits (142), Expect = 7e-10
Identities = 10/54 (18%), Positives = 23/54 (42%)
Query: 48 SELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIP 101
L++ +++ A R+F + P + P + K+ LG++ H+
Sbjct: 24 RLLDQDERDIAATVRQFVDTRLKPNVEGWFESATLPSELAKEFGNLGVLGMHLQ 77
>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD,
STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus
thermophilus}
Length = 385
Score = 110 bits (278), Expect = 5e-28
Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 4/109 (3%)
Query: 100 IPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLA 159
++ M RAS T + E+VRVP+ L + G K + + R +A GA+G
Sbjct: 198 AREVKRKMSLRASVTSELVLEEVRVPESL-RLPKALGLKAPLSCLTQARFGIAWGAMGAL 256
Query: 160 QRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLLGVH 208
+ +EA +A R FG P+A Q + K+ + LL
Sbjct: 257 EAVYEEAVAFAKSRSTFGEPLAKKQLVQAKL---AEMLAWHTEGLLLAW 302
Score = 84.1 bits (209), Expect = 1e-18
Identities = 40/133 (30%), Positives = 56/133 (42%), Gaps = 39/133 (29%)
Query: 196 FEREI-----QLMLLGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGI-------- 242
F + +L LG L GG +S L+ EL +G+
Sbjct: 43 FPTHLIPRFAELGFLGPT-----LPPEYGGAGVSSAAYGLICYELERVDSGLRSFVSVQS 97
Query: 243 ---MTALEASG-----------------LGAYCVTEPGAGSDVNG-VKTKAVKKGDEWIL 281
M + A G +G + +TEP GSD G +KT+A ++GD W+L
Sbjct: 98 SLVMYPIYAYGSEEQKREFLPKLARGEMVGCFGLTEPDGGSDPYGNMKTRARREGDTWVL 157
Query: 282 NGQKMWITNGGVA 294
NG KMWITNG +A
Sbjct: 158 NGTKMWITNGNLA 170
Score = 62.2 bits (152), Expect = 4e-11
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQ 44
+ + R +A GA+G + +EA +A R FG P+A Q
Sbjct: 238 LSCLTQARFGIAWGAMGALEAVYEEAVAFAKSRSTFGEPLAKKQ 281
Score = 58.7 bits (143), Expect = 6e-10
Identities = 14/54 (25%), Positives = 26/54 (48%)
Query: 48 SELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIP 101
L ++E Q AR+F +E +P + G +P ++ + ELG + +P
Sbjct: 9 DLLTPEEKEVQKAARRFLEKEALPHIRDWWEEGVFPTHLIPRFAELGFLGPTLP 62
>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; HET: FDA; 1.70A
{Mycobacterium smegmatis}
Length = 403
Score = 110 bits (277), Expect = 9e-28
Identities = 27/109 (24%), Positives = 41/109 (37%), Gaps = 4/109 (3%)
Query: 100 IPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLA 159
+ M RAS T + + VR+P L + ++ R + GA+G A
Sbjct: 215 ANTIKSKMSLRASVTSELVLDGVRLPDSA-RLPGATSLGAPLRCLNEARFGIVFGALGAA 273
Query: 160 QRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLLGVH 208
+ CL+ A YA R+ F PI Q K+ + E L
Sbjct: 274 RDCLETALAYACSREQFDRPIGGFQLTQQKL---ADMTLEYGKGFLLAL 319
Score = 86.1 bits (214), Expect = 3e-19
Identities = 36/104 (34%), Positives = 48/104 (46%), Gaps = 28/104 (26%)
Query: 219 GGLELSVFDGCLVAEELAYGCTGIMTALE--------------------------ASG-- 250
G +S L EL G +GI + + ASG
Sbjct: 85 GCAGMSAVAYGLACLELEAGDSGIRSLVSVQGSLAMYAIHAFGSDEQKDQWLPDMASGHR 144
Query: 251 LGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVA 294
+G + +TEP GSD G++T+A + GD+WIL G KMWITNG VA
Sbjct: 145 IGCFGLTEPDHGSDPAGMRTRATRSGDDWILTGTKMWITNGSVA 188
Score = 61.5 bits (150), Expect = 7e-11
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQ 44
+ ++ R + GA+G A+ CL+ A YA R+ F PI Q
Sbjct: 255 LRCLNEARFGIVFGALGAARDCLETALAYACSREQFDRPIGGFQ 298
Score = 54.5 bits (132), Expect = 1e-08
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 48 SELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPW-GIVKKAHELGLINGHIP 101
+ L+ ++E + R + I P A GE P + + ELGL+ H+
Sbjct: 28 AVLSAEEREIRDTVRSVVQRRIKPHIASWYEDGELPARELAVELGELGLLGMHLK 82
>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin,
peroxisome, glyoxysome, fatty acid metabo lipid
metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A
{Arabidopsis thaliana} PDB: 2ix6_A*
Length = 436
Score = 109 bits (275), Expect = 2e-27
Identities = 28/109 (25%), Positives = 42/109 (38%), Gaps = 4/109 (3%)
Query: 100 IPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLA 159
+G R I ++V VP E+ L F+ +R VA +G++
Sbjct: 241 ATKIPNKIGLRMVQNGDILLQNVFVPDED-RLPGVNSFQDTSKVLAVSRVMVAWQPIGIS 299
Query: 160 QRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLLGVH 208
D +Y ERK FG P+AA Q K+ + +Q M L
Sbjct: 300 MGIYDMCHRYLKERKQFGAPLAAFQLNQQKLVQMLG---NVQAMFLMGW 345
Score = 87.7 bits (218), Expect = 1e-19
Identities = 29/132 (21%), Positives = 42/132 (31%), Gaps = 39/132 (29%)
Query: 196 FEREI-----QLMLLGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGIMTALE--- 247
F I + + G + G LS+ + E+A T +
Sbjct: 87 FPFHITPKLGAMGVAGGS------IKGYGCPGLSITANAIATAEIARVDASCSTFILVHS 140
Query: 248 -----------------------ASG--LGAYCVTEPGAGSDVNGVKTKAVKKGDEWILN 282
A + + +TEP GSD +G+ T A K W +N
Sbjct: 141 SLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNGSDASGLGTTATKVEGGWKIN 200
Query: 283 GQKMWITNGGVA 294
GQK WI N A
Sbjct: 201 GQKRWIGNSTFA 212
Score = 61.9 bits (151), Expect = 5e-11
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQ 44
+R VA +G++ D +Y ERK FG P+AA Q
Sbjct: 281 SKVLAVSRVMVAWQPIGISMGIYDMCHRYLKERKQFGAPLAAFQ 324
Score = 58.8 bits (143), Expect = 6e-10
Identities = 14/56 (25%), Positives = 25/56 (44%)
Query: 46 FYSELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIP 101
F L +Q + R+ +E+ P+ E+ E+P+ I K +G+ G I
Sbjct: 51 FNDLLTPEEQAIRKKVRECMEKEVAPIMTEYWEKAEFPFHITPKLGAMGVAGGSIK 106
>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase,
decarboxylation, flavin protein, oxidoreductase; HET:
FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB:
2r0n_A* 1sir_A* 2r0m_A*
Length = 392
Score = 105 bits (265), Expect = 3e-26
Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 4/109 (3%)
Query: 100 IPASEQNMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLA 159
P + RAS T I + V VP+EN +L + + R +A G +G +
Sbjct: 201 APRIQGKFSLRASATGMIIMDGVEVPEEN-VLPGASSLGGPFGCLNNARYGIAWGVLGAS 259
Query: 160 QRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFEREIQLMLLGVH 208
+ CL A +YAL+R FGVP+A +Q + K+ + EI L L
Sbjct: 260 EFCLHTARQYALDRMQFGVPLARNQLIQKKLADMLT---EITLGLHACL 305
Score = 80.3 bits (199), Expect = 4e-17
Identities = 36/134 (26%), Positives = 52/134 (38%), Gaps = 41/134 (30%)
Query: 196 FEREI-----QLMLLGVHNCNVFLVSVSGGLELSVFDGCLVAEELAYGCTGI-------- 242
F REI +L +LG + G +S L+A EL +G
Sbjct: 46 FHREIISEMGELGVLGPT------IKGYGCAGVSSVAYGLLARELERVDSGYRSAMSVQS 99
Query: 243 ---MTALEASG-----------------LGAYCVTEPGAGSDVNGVKTKAVKKGDE--WI 280
M + A G LG + +TEP +GSD + ++T+A +
Sbjct: 100 SLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSYT 159
Query: 281 LNGQKMWITNGGVA 294
LNG K WITN +A
Sbjct: 160 LNGTKTWITNSPMA 173
Score = 61.1 bits (149), Expect = 1e-10
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQ 44
+ R +A G +G ++ CL A +YAL+R FGVP+A +Q
Sbjct: 241 FGCLNNARYGIAWGVLGASEFCLHTARQYALDRMQFGVPLARNQ 284
Score = 55.7 bits (135), Expect = 5e-09
Identities = 11/54 (20%), Positives = 24/54 (44%)
Query: 48 SELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIP 101
+L + + R +C+E ++P +R + I+ + ELG++ I
Sbjct: 12 EQLTTDEILIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGVLGPTIK 65
>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein,
oxidoreducta; HET: FAD; 2.80A {Homo sapiens}
Length = 428
Score = 80.0 bits (198), Expect = 5e-17
Identities = 29/86 (33%), Positives = 39/86 (45%), Gaps = 24/86 (27%)
Query: 117 ITFEDVRVPKENVLLGEGAGFKIA------------MDTFDKTRPPVAAGAVGLAQRCLD 164
I F VRVP N++LGEG GF+I+ M R VGLA+R L
Sbjct: 249 IHFNQVRVPATNLILGEGRGFEISQGRLGPGRIHHCM------R------TVGLAERALQ 296
Query: 165 EATKYALERKAFGVPIAAHQGMYLKI 190
+ A +R AF + AH+ + I
Sbjct: 297 IMCERATQRIAFKKKLYAHEVVAHWI 322
Score = 58.4 bits (142), Expect = 8e-10
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 253 AYCVTEPG-AGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVAN 295
+C+TEP A SD ++ + D +++NG+K W + G
Sbjct: 151 CFCMTEPDVASSDATNIECSIQRDEDSYVINGKKWWSSGAGNPK 194
Score = 46.1 bits (110), Expect = 9e-06
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 15 AVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQEFQALAR 62
VGLA+R L + A +R AF + AH+V + E++ + R
Sbjct: 287 TVGLAERALQIMCERATQRIAFKKKLYAHEVVAHWIAESRIAIEK-IR 333
Score = 31.5 bits (72), Expect = 0.35
Identities = 12/66 (18%), Positives = 19/66 (28%), Gaps = 13/66 (19%)
Query: 49 ELNETQQEFQALARKFCREEIIPV------AAEHDRTGEYPWGIV-------KKAHELGL 95
QE + F ++ I+P + WG + A GL
Sbjct: 22 VQTRKGQEVLIKVKHFMKQHILPAEKEVTEFYVQNENSVDKWGKPLVIDKLKEMAKVEGL 81
Query: 96 INGHIP 101
N +P
Sbjct: 82 WNLFLP 87
>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle,
oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus}
SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A*
Length = 661
Score = 74.9 bits (184), Expect = 4e-15
Identities = 17/102 (16%), Positives = 31/102 (30%), Gaps = 18/102 (17%)
Query: 107 MGQRASDTRGITFEDVRVPKENVLLGEG-----------AGFKIAMDTFDKTRPPVAAGA 155
G D + ++ R+P+EN+L+ K+ T R + A
Sbjct: 230 FGYEEMDNGYLKMDNYRIPRENMLMKYAQVKPDGTYVKPLSNKLTYGTMVFVRSFLVGNA 289
Query: 156 VGLAQRCLDEATKYALERKAFG-------VPIAAHQGMYLKI 190
+ A +Y+ R+ I Q K+
Sbjct: 290 AQSLSKACTIAIRYSAVRRQSEIKQSEPEPQILDFQTQQYKL 331
Score = 59.9 bits (145), Expect = 3e-10
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 7/49 (14%)
Query: 251 LGAYCVTEPGAGSDVNGVKTKAV--KKGDEWILNG-----QKMWITNGG 292
G Y TE G G+ + G++T A K E+ILN K W G
Sbjct: 133 TGTYAQTEMGHGTHLRGLETTATYDPKTQEFILNSPTVTSIKWWPGGLG 181
Score = 41.8 bits (98), Expect = 2e-04
Identities = 8/51 (15%), Positives = 13/51 (25%), Gaps = 7/51 (13%)
Query: 1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFG-------VPIAAHQ 44
T R + A + A +Y+ R+ I Q
Sbjct: 275 YGTMVFVRSFLVGNAAQSLSKACTIAIRYSAVRRQSEIKQSEPEPQILDFQ 325
>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD
cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP:
a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A*
Length = 659
Score = 69.2 bits (169), Expect = 3e-13
Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 19/102 (18%)
Query: 108 GQRASDTRGITFEDVRVPKENVLLGEG------------AGFKIAMDTFDKTRPPVAAGA 155
+ D + F+ VR+P++ +L+ ++ T R + A A
Sbjct: 233 AYNSMDNGFLMFDHVRIPRDQMLMRLSKVTREGEYVPSDVPKQLVYGTMVYVRQTIVADA 292
Query: 156 VGLAQRCLDEATKYALERKAFG-------VPIAAHQGMYLKI 190
R + AT+Y+ R+ FG + ++ ++
Sbjct: 293 SNALSRAVCIATRYSAVRRQFGAHNGGIETQVIDYKTQQNRL 334
Score = 58.0 bits (140), Expect = 1e-09
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 251 LGAYCVTEPGAGSDVNGVKTKAV--KKGDEWILNGQKMWITNGGVAN 295
+G Y TE G GS+V G++T A K DE++++ +
Sbjct: 132 IGCYAQTELGHGSNVQGLETTATLDPKTDEFVIHTPTQTASKWWPGG 178
Score = 43.0 bits (101), Expect = 8e-05
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 7/51 (13%)
Query: 1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFG-------VPIAAHQ 44
T R + A A R + AT+Y+ R+ FG + ++
Sbjct: 278 YGTMVYVRQTIVADASNALSRAVCIATRYSAVRRQFGAHNGGIETQVIDYK 328
>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme
hydroxylase, oxidoreductase; 2.3A {Acinetobacter
baumannii} PDB: 2jbs_A* 2jbt_A*
Length = 422
Score = 57.1 bits (138), Expect = 2e-09
Identities = 16/99 (16%), Positives = 39/99 (39%), Gaps = 15/99 (15%)
Query: 107 MGQRASDTRGITFEDVRVPKENVL------LGEGAGFKIAMDTFDKTRPP-------VAA 153
++S ++ + +V +P+ + G+ AGF + D+ P +A
Sbjct: 213 QAIKSSGSKMLKLVNVFIPEYRISKAKDMMEGKSAGFGLYPDSKIFYTPYRPYFASGFSA 272
Query: 154 GAVGLAQRCLDEATKYALERK--AFGVPIAAHQGMYLKI 190
++G+A+R ++ + R G + ++I
Sbjct: 273 VSLGIAERMIEAFKEKQRNRVRAYTGANVGLATPALMRI 311
Score = 53.6 bits (129), Expect = 2e-08
Identities = 19/92 (20%), Positives = 27/92 (29%), Gaps = 14/92 (15%)
Query: 219 GGLELSVFDGCLVAEELAYGCTGIMTALEASGLGAYCV--------------TEPGAGSD 264
GGLE+S+ D LA C G A ++ + S
Sbjct: 87 GGLEMSLPDFANCIVTLAGACAGTAWAFSLLCTHSHQIAMFSKQLQDEIWLKDPDATASS 146
Query: 265 VNGVKTKAVKKGDEWILNGQKMWITNGGVANW 296
K + ILNG W + A +
Sbjct: 147 SIAPFGKVEEVEGGIILNGDYGWSSGCDHAEY 178
Score = 35.9 bits (83), Expect = 0.015
Identities = 12/73 (16%), Positives = 26/73 (35%), Gaps = 7/73 (9%)
Query: 11 VAAGAVGLAQRCLDEATKYALERK--AFGVPIAAHQVFYSELNETQQEFQALARKFCREE 68
+A ++G+A+R ++ + R G + + E+ + A AR +
Sbjct: 270 FSAVSLGIAERMIEAFKEKQRNRVRAYTGANVGLATPALMRIAESTHQVAA-ARALLEK- 327
Query: 69 IIPVAAEHDRTGE 81
+H G
Sbjct: 328 ---TWEDHRIHGL 337
Score = 33.2 bits (76), Expect = 0.10
Identities = 12/80 (15%), Positives = 24/80 (30%), Gaps = 1/80 (1%)
Query: 23 LDEATKYALERKAFGVPIAAHQVFYSELNETQQEFQALARKFCREEIIPVAAEHDRTGEY 82
L+ + +A PI + + ++ +I A ++
Sbjct: 6 LNLDSDVIHACEAIFQPIRLVYTHAQTPDVSGVSMLEKIQQI-LPQIAKNAESAEQLRRV 64
Query: 83 PWGIVKKAHELGLINGHIPA 102
P +K E+GL P
Sbjct: 65 PDENIKLLKEIGLHRAFQPK 84
>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein,
oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB:
3u33_A*
Length = 541
Score = 54.4 bits (131), Expect = 2e-08
Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 6/100 (6%)
Query: 86 IVKKAHELGLING-HIPASEQNMGQRASDTRGITFEDVRVPKENVLLGE-GAGFKIAMDT 143
V + G N + + +G R++ + + F+D LLG G G ++ +
Sbjct: 239 FVPRFLPDGQRNAIRLERLKDKLGNRSNASCEVEFQDA----IGWLLGLEGEGIRLILKM 294
Query: 144 FDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAH 183
TR A G+ + +R A +A +R FG P+
Sbjct: 295 GGMTRFDCALGSHAMMRRAFSLAIYHAHQRHVFGNPLIQQ 334
Score = 47.4 bits (113), Expect = 3e-06
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 251 LGAYCVTEPGAGSDVNGVKTKAVKKGD-EWILNGQKMWITNG 291
L +TE GSDV T+A + D + L G K + +
Sbjct: 179 LIGMGMTEKQGGSDVMSNTTRAERLEDGSYRLVGHKWFFSVP 220
Score = 42.8 bits (101), Expect = 9e-05
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 7 TRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAH 43
TR A G+ + +R A +A +R FG P+
Sbjct: 298 TRFDCALGSHAMMRRAFSLAIYHAHQRHVFGNPLIQQ 334
>3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix
bundle, oxidoreductase; 2.50A {Burkholderia cepacia}
Length = 515
Score = 53.0 bits (126), Expect = 5e-08
Identities = 11/86 (12%), Positives = 22/86 (25%), Gaps = 7/86 (8%)
Query: 107 MGQRASDTRGITFEDVRVPKENVLL--GEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLD 164
Q F++V +P E V FD + V A+ +
Sbjct: 246 ASQGDELDSTTVFDNVFIPWEQVFHIGNPEHAKLYPQRIFDWVHYHILIRQVLRAELIVG 305
Query: 165 EATKYALERKAFGVPIAAHQGMYLKI 190
A + + + ++
Sbjct: 306 LAILI-----TEHIGTSKLPTVSARV 326
Score = 49.9 bits (118), Expect = 5e-07
Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 6/65 (9%)
Query: 253 AYCVTEPGAG-----SDVNGVKTKAVKK-GDEWILNGQKMWITNGGVANWQNRTRDFRYE 306
+P + + V+K D I+NG K T ++ + +R
Sbjct: 150 PLNFVDPQTDRSSDAAQARSPNLRIVEKTDDGIIVNGVKAVGTGIAFGDYMHIGCLYRPG 209
Query: 307 KPGHY 311
PG
Sbjct: 210 IPGEQ 214
>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural
genomics protein structure initiative, midwest center
for structural genomics, MCSG; HET: 1PS; 1.65A
{Rhodococcus SP} PDB: 3aff_A 3afe_A
Length = 394
Score = 52.4 bits (126), Expect = 6e-08
Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 12/81 (14%)
Query: 106 NMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPP------------VAA 153
+G R + + + EDV VP VL + A T P ++A
Sbjct: 184 VVGLRGTGSNTVVVEDVFVPTHRVLSFKAMSNLTAPGLERNTAPVYKMPWGTIHPTTISA 243
Query: 154 GAVGLAQRCLDEATKYALERK 174
VG+A D ++ +R
Sbjct: 244 PIVGMAYGAYDAHVEHQGKRV 264
Score = 41.2 bits (97), Expect = 2e-04
Identities = 11/92 (11%), Positives = 21/92 (22%), Gaps = 14/92 (15%)
Query: 219 GGLELSVFDGCLVAEELAYGCTGI-----MTALEASGLGA---------YCVTEPGAGSD 264
GG + ++A C + + L + S
Sbjct: 59 GGYQADPVLFYSAVRKIASACGSTGWVSSIIGVHNWHLALFSQQAQEDVWGNDTDVRISS 118
Query: 265 VNGVKTKAVKKGDEWILNGQKMWITNGGVANW 296
+ +NG W + A+W
Sbjct: 119 SYAPMGAGQVVDGGYTVNGAWAWSSGCDHASW 150
Score = 28.5 bits (64), Expect = 2.9
Identities = 8/52 (15%), Positives = 12/52 (23%), Gaps = 1/52 (1%)
Query: 51 NETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPA 102
+ E + A E + P +K E G P
Sbjct: 6 DHDSHEVMQRLDAL-LPTLRERAQETEDLRRIPDDSMKALQETGFFRLLQPE 56
Score = 28.1 bits (63), Expect = 3.6
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 11 VAAGAVGLAQRCLDEATKYALERK 34
++A VG+A D ++ +R
Sbjct: 241 ISAPIVGMAYGAYDAHVEHQGKRV 264
>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics,
PSI-2, protein structure initiative, midwest CENT
structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus
SP}
Length = 414
Score = 47.4 bits (113), Expect = 3e-06
Identities = 12/89 (13%), Positives = 24/89 (26%), Gaps = 12/89 (13%)
Query: 106 NMGQRASDTRGITFEDVRVPKENVLLGEGAGFKIAMDTFDKTRPP------------VAA 153
+G R + ++ + + VP L A + P + A
Sbjct: 201 VIGLRGTGSKDLIVDGAFVPGYRTLNAAKVMDGRAQKEAGRPEPLFNMPYSCMFPLGITA 260
Query: 154 GAVGLAQRCLDEATKYALERKAFGVPIAA 182
+G+ + L +R A
Sbjct: 261 AVIGITEGALACHIAVQKDRVAITGQKIK 289
Score = 40.1 bits (94), Expect = 6e-04
Identities = 12/92 (13%), Positives = 23/92 (25%), Gaps = 14/92 (15%)
Query: 219 GGLELSVFDGCLVAEELAYGCTGI--------MTALEASGLGAYCVTEP-GAGSDVNGV- 268
GG E+ + +A + E + E G +D
Sbjct: 72 GGYEVHPREFAETVMGVAALDGASGWVTGIVGVHPWELAFADPQVQEEIWGEDNDTWMAS 131
Query: 269 ----KTKAVKKGDEWILNGQKMWITNGGVANW 296
A ++L G+ + + W
Sbjct: 132 PYAPMGVATPVDGGYVLKGRWSFSSGTDHCQW 163
Score = 29.3 bits (66), Expect = 1.5
Identities = 5/32 (15%), Positives = 10/32 (31%)
Query: 11 VAAGAVGLAQRCLDEATKYALERKAFGVPIAA 42
+ A +G+ + L +R A
Sbjct: 258 ITAAVIGITEGALACHIAVQKDRVAITGQKIK 289
>1u8v_A Gamma-aminobutyrate metabolism dehydratase/isomerase; ALFA-helixes,
beta-strands, lyase; HET: FAD; 1.60A {Clostridium
aminobutyricum} SCOP: a.29.3.1 e.6.1.1
Length = 490
Score = 44.4 bits (104), Expect = 3e-05
Identities = 8/52 (15%), Positives = 18/52 (34%), Gaps = 8/52 (15%)
Query: 253 AYCVTEPGAGSDVN-------GVKTKAVKK-GDEWILNGQKMWITNGGVANW 296
+T+P + + + V+K D ++ G K T ++
Sbjct: 146 DGAMTDPKGDRGLAPSAQKDPDLFLRIVEKREDGIVVRGAKAHQTGSINSHE 197
Score = 42.5 bits (99), Expect = 1e-04
Identities = 10/80 (12%), Positives = 21/80 (26%), Gaps = 7/80 (8%)
Query: 114 TRGITFEDVRVPKENVLL--GEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYAL 171
+ F++V +P + + L + R VG+ + A
Sbjct: 257 EALVVFDNVFIPNDRIFLCQEYDFAGMMVERFAGYHRQSYGGCKVGVGDVVI-----GAA 311
Query: 172 ERKAFGVPIAAHQGMYLKIQ 191
A + K+
Sbjct: 312 ALAADYNGAQKASHVKDKLI 331
>2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken spring-8
center, oxygnase component, 4- hydroxyphenylacetate
3-monooxygenase; 1.60A {Thermus thermophilus} PDB:
2yyl_A* 2yym_A* 2yyi_A* 2yyg_A* 2yyj_A*
Length = 481
Score = 44.0 bits (103), Expect = 4e-05
Identities = 6/52 (11%), Positives = 12/52 (23%), Gaps = 8/52 (15%)
Query: 253 AYCVTEPGAG--------SDVNGVKTKAVKKGDEWILNGQKMWITNGGVANW 296
+ +T P D + ++ G +M T
Sbjct: 141 THALTNPQVNRARPPSGQPDPYIPVGVVKQTEKGIVVRGARMTATFPLADEV 192
Score = 43.2 bits (101), Expect = 8e-05
Identities = 16/88 (18%), Positives = 25/88 (28%), Gaps = 9/88 (10%)
Query: 107 MGQRASDTRGITFEDVRVPKENVLL----GEGAGFKIAMDTFDKTRPPVAAGAVGLAQRC 162
+ + F+DV VP E V + A + V A +
Sbjct: 240 SSRVEEMDCLVIFDDVLVPWERVFILGNVELCNNAYGATGALNHMAHQVVALKTAKTEAF 299
Query: 163 LDEATKYALERKAFGVPIAAHQGMYLKI 190
L A A G+ + + KI
Sbjct: 300 LGVAALM-----AEGIGADVYGHVQEKI 322
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.3 bits (91), Expect = 0.002
Identities = 44/256 (17%), Positives = 71/256 (27%), Gaps = 97/256 (37%)
Query: 1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGV-------PIAAHQVF------- 46
MD + A Q + A + + F + P+ F
Sbjct: 1633 MDLYKT--SKAA-------QDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKR 1683
Query: 47 ----YSELN-ETQQEFQALARKFCR---EEIIPVAAEHD-----RTGEY--P-------- 83
YS + ET + + K + E + T ++ P
Sbjct: 1684 IRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSAT-QFTQPALTLMEKA 1742
Query: 84 -WGIVKKAHELGLIN------GHIPASEQNMGQ---RASDTRGITFED-VRV-------P 125
+ +K GLI GH S +G+ AS ++ E V V
Sbjct: 1743 AFEDLKSK---GLIPADATFAGH---S---LGEYAALASLADVMSIESLVEVVFYRGMTM 1793
Query: 126 KENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQG 185
+ V E M +A +A EA +Y +ER + G
Sbjct: 1794 QVAVPRDELGRSNYGM---------IAINPGRVAASFSQEALQYVVER------VGKRTG 1838
Query: 186 MYLKI--------QYV 193
++I QYV
Sbjct: 1839 WLVEIVNYNVENQQYV 1854
Score = 37.7 bits (87), Expect = 0.005
Identities = 49/295 (16%), Positives = 93/295 (31%), Gaps = 79/295 (26%)
Query: 11 VAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQEFQALARKFCREEII 70
V A A+ + + RKA V +F+ + + + + I+
Sbjct: 278 VTAVAIAETD---SWESFFVSVRKAITV------LFFIGV-RCYEAYPNTSL---PPSIL 324
Query: 71 PVAAEHDRTGEYP----WGIVKKAHE--LGLINGHIPASEQNMGQRASDTRGITFEDVRV 124
+ E++ P + ++ + + N H+PA +Q V +
Sbjct: 325 EDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQ----------------VEI 368
Query: 125 -----PKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERK-AFGV 178
K V+ +G ++ + T A + GL Q ++ ERK F
Sbjct: 369 SLVNGAKNLVV----SGPPQSLYGLNLTLRKAKAPS-GLDQS----RIPFS-ERKLKFSN 418
Query: 179 ---PIAA--HQGMYLK------IQYVSIFEREIQLMLLGVHNCNVFLVSVSGGLELSVFD 227
P+A+ H L + + + + V+ G +L V
Sbjct: 419 RFLPVASPFH-SHLLVPASDLINKDLVKNNVSFNAKDIQIP---VY--DTFDGSDLRVLS 472
Query: 228 GCLVAEELAYGCTGIMTAL----EASGLGAYCVTE--PGAGSDVNGVKTKAVKKG 276
G + E + I+ + A + + PG S + GV T K G
Sbjct: 473 GSIS-ERI---VDCIIRLPVKWETTTQFKATHILDFGPGGASGL-GVLTHRNKDG 522
Score = 33.1 bits (75), Expect = 0.14
Identities = 50/348 (14%), Positives = 98/348 (28%), Gaps = 115/348 (33%)
Query: 8 RPPVAAGAVGLAQRCLDEATK-YALERKAFGVPIAAHQ----VFYSELNETQQEFQALAR 62
RP L + + + A+ FG Q ++ EL + Q + L
Sbjct: 135 RPFDKKSNSALFRAVGEGNAQLVAI----FG-----GQGNTDDYFEELRDLYQTYHVLVG 185
Query: 63 KFCR---EEIIP-VAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGIT 118
+ E + + D + G+ + L + P++
Sbjct: 186 DLIKFSAETLSELIRTTLDAEKVFTQGL----NILEWLEN--PSN--------------- 224
Query: 119 FEDVRVPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGV 178
P ++ LL P++ +G+ Q Y + K G
Sbjct: 225 -----TPDKDYLL----------------SIPISCPLIGVIQLA-----HYVVTAKLLGF 258
Query: 179 PIAAHQGMYLKIQYVSIFEREIQLMLL--GVHNCNVFLVSVSGGLELSVFDGCLVAEELA 236
+ ++ + + + + + F VSV + + F G E A
Sbjct: 259 T---PGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYE--A 313
Query: 237 YGCTGIMTALEASGLGAYCVTEPGAGS-----DVNGVKTKAVKK----------GDEWI- 280
Y T+L S L + E G ++ + + V+ + +
Sbjct: 314 YPN----TSLPPSIL-EDSL-ENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVE 367
Query: 281 ---LNGQKMWITNG------GVANW-----------QNRTRDFRYEKP 308
+NG K + +G G+ Q+R F K
Sbjct: 368 ISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIP-FSERKL 414
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella
thermoacetica} PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A*
3rbo_A* 3sin_A* 1eg7_A
Length = 557
Score = 29.1 bits (66), Expect = 2.0
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 236 AYGCTGIMTALEASGLGAYCVTEPGAGSD 264
A+GC I+ A L Y VTE G G+D
Sbjct: 279 AHGCNSIIATKTALKLADYVVTEAGFGAD 307
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative
formyltetrahydrofolate synthetase, structural genomics;
HET: MSE; 1.85A {Thermotoga maritima}
Length = 543
Score = 28.7 bits (65), Expect = 2.5
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 236 AYGCTGIMTALEASGLGAYCVTEPGAGSD 264
A+G I+ A L Y VTE G G+D
Sbjct: 265 AHGTNSIIATKMAMKLSEYTVTEAGFGAD 293
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA
complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus}
PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A*
3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3t3f_A* 4df4_A*
4df8_A* 4dfj_A* 3rrh_A* 4dfm_A* 4dfp_A* 1ktq_A* 5ktq_A*
...
Length = 540
Score = 28.7 bits (65), Expect = 2.8
Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 8/65 (12%)
Query: 18 LAQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQEFQALARKFCREEI--IPVAAE 75
+A+R E T+ A ER A + + L ++ L + E V A
Sbjct: 98 VARRYGGEWTEEAGERAA--LSERLFANLWGRLEGEER----LLWLYREVERPLSAVLAH 151
Query: 76 HDRTG 80
+ TG
Sbjct: 152 MEATG 156
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex,
oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium
parvum}
Length = 361
Score = 27.6 bits (62), Expect = 6.3
Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
Query: 115 RGITFEDVR-VPKENVLLGEGAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALER 173
+G+TFED+ VP + +L + + + P+ + A+ E
Sbjct: 11 KGLTFEDILLVPNYSEVLPREVSLETKLTKNVSLKIPLISSAMDTVT----EHLMAVGMA 66
Query: 174 KAFGVPI 180
+ G+ I
Sbjct: 67 RLGGIGI 73
>1wlx_A Alpha-actinin 4; three-helix bundle, protein binding; NMR {Homo
sapiens}
Length = 129
Score = 26.5 bits (58), Expect = 6.7
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 40 IAAHQVFYSELNETQQEFQALA 61
I+AH F S L + +E +A+
Sbjct: 51 ISAHDQFKSTLPDADREREAIL 72
>3rpp_A Glutathione S-transferase kappa 1; glutathione transferase, kappa
GST, TRX domain, GSH binding, detoxification, APO form;
1.80A {Homo sapiens} PDB: 3rpn_A 1yzx_A*
Length = 234
Score = 26.7 bits (59), Expect = 9.1
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 23 LDEATKYALERKAFGVP 39
L E T+ A AFG+P
Sbjct: 168 LKETTEAACRYGAFGLP 184
Score = 26.7 bits (59), Expect = 9.1
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 163 LDEATKYALERKAFGVP 179
L E T+ A AFG+P
Sbjct: 168 LKETTEAACRYGAFGLP 184
>1r4w_A Glutathione S-transferase, mitochondrial; glutathione transferase,
kappa GST, RGSTK1-1; HET: GSH; 2.50A {Rattus norvegicus}
SCOP: c.47.1.13
Length = 226
Score = 26.7 bits (59), Expect = 9.2
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 23 LDEATKYALERKAFGVP 39
L E T A + AFG+P
Sbjct: 168 LRETTGAACKYGAFGLP 184
Score = 26.7 bits (59), Expect = 9.2
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 163 LDEATKYALERKAFGVP 179
L E T A + AFG+P
Sbjct: 168 LRETTGAACKYGAFGLP 184
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.411
Gapped
Lambda K H
0.267 0.0777 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,956,046
Number of extensions: 304873
Number of successful extensions: 947
Number of sequences better than 10.0: 1
Number of HSP's gapped: 884
Number of HSP's successfully gapped: 174
Length of query: 312
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 219
Effective length of database: 4,105,140
Effective search space: 899025660
Effective search space used: 899025660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.6 bits)