RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10338
(312 letters)
>d1ivha2 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM domains
{Human (Homo sapiens) [TaxId: 9606]}
Length = 236
Score = 70.6 bits (172), Expect = 7e-15
Identities = 28/67 (41%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 248 ASG--LGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFRY 305
SG +GA ++EP AGSDV +K KA KKG+ +ILNG K WITNG A+
Sbjct: 120 ISGEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPDADVLIVYAKTDL 179
Query: 306 EKPGHYQ 312
+
Sbjct: 180 AAVPASR 186
Score = 49.0 bits (116), Expect = 1e-07
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 50 LNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWG--IVKKAHELGLINGHIPASEQNM 107
L+E Q++ + KF +E + P A E DR+ E+ K+ LG++ P
Sbjct: 8 LSEEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGS 67
Query: 108 GQ 109
G
Sbjct: 68 GL 69
Score = 42.5 bits (99), Expect = 3e-05
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGE 133
+G R S+T + FED ++P N +LG
Sbjct: 206 LDKLGMRGSNTCELIFEDCKIPAAN-ILGH 234
>d3mdea2 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydrogenase, NM
domains {Pig (Sus scrofa) [TaxId: 9823]}
Length = 231
Score = 67.3 bits (163), Expect = 9e-14
Identities = 38/62 (61%), Positives = 43/62 (69%)
Query: 251 LGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFRYEKPGH 310
+ AYCVTEPGAGSDV G+KTKA KKGDE+I+NGQKMWITNGG ANW +
Sbjct: 120 MCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKAP 179
Query: 311 YQ 312
Sbjct: 180 AS 181
Score = 56.1 bits (134), Expect = 6e-10
Identities = 33/45 (73%), Positives = 38/45 (84%)
Query: 49 ELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHEL 93
EL E Q+EFQA ARKF REEIIPVAAE+DRTGEYP ++K+A EL
Sbjct: 5 ELTEQQKEFQATARKFAREEIIPVAAEYDRTGEYPVPLLKRAWEL 49
Score = 50.0 bits (118), Expect = 7e-08
Identities = 26/30 (86%), Positives = 26/30 (86%)
Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGE 133
E NMGQR SDTRGI FEDVRVPKENVL GE
Sbjct: 202 EINMGQRCSDTRGIVFEDVRVPKENVLTGE 231
>d1rx0a2 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 231
Score = 61.9 bits (149), Expect = 8e-12
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 50 LNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGH 99
LNE Q+EFQ +A F E+ P AE D+ +P +++KA +LG +
Sbjct: 10 LNEEQKEFQKVAFDFAAREMAPNMAEWDQKELFPVDVMRKAAQLGFGGVY 59
Score = 54.5 bits (130), Expect = 2e-09
Identities = 21/45 (46%), Positives = 31/45 (68%)
Query: 252 GAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANW 296
+YC+TEPG+GSD + T A K+GD +ILNG K +I+ G ++
Sbjct: 125 ASYCLTEPGSGSDAASLLTSAKKQGDHYILNGSKAFISGAGESDI 169
Score = 44.5 bits (104), Expect = 5e-06
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 99 HIPASEQNMGQRASDTRGITFEDVRVPKENVLLGE 133
E+ +G + TR + FED VP N + E
Sbjct: 197 SFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGSE 231
>d1jqia2 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM domains
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 231
Score = 60.0 bits (144), Expect = 3e-11
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 45 VFYS-ELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPAS 103
V+ S EL ET Q + R F +E++P+AA+ D+ +P VKK ELGL+ +P
Sbjct: 1 VYQSVELPETHQMLRQTCRDFAEKELVPIAAQLDKEHLFPTSQVKKMGELGLLAMDVPEE 60
Query: 104 EQNMGQRASDTRGITFEDVR 123
G E R
Sbjct: 61 LSGAGLDYLAYSIALEEISR 80
Score = 46.9 bits (110), Expect = 9e-07
Identities = 18/53 (33%), Positives = 24/53 (45%)
Query: 82 YPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEG 134
GI + + E +G RAS T + FED R+PKEN+L G
Sbjct: 179 QNKGISAFLVPMPTPGLTLGKKEDKLGIRASSTANLIFEDCRIPKENLLGEPG 231
Score = 41.5 bits (96), Expect = 6e-05
Identities = 21/47 (44%), Positives = 28/47 (59%)
Query: 252 GAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQN 298
G + ++EPG GSD T A ++GD W+LNG K WITN A+
Sbjct: 123 GCFALSEPGNGSDAGAASTTAREEGDSWVLNGTKAWITNSWEASATV 169
>d2d29a2 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus
thermophilus [TaxId: 274]}
Length = 233
Score = 58.9 bits (141), Expect = 7e-11
Identities = 17/48 (35%), Positives = 27/48 (56%)
Query: 46 FYSELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHEL 93
+ E +++ R+F + E+ P AAE DRTG +PW +V+K E
Sbjct: 2 LWFEEGAEERQVLGPFREFLKAEVAPGAAERDRTGAFPWDLVRKLAEF 49
Score = 45.4 bits (106), Expect = 3e-06
Identities = 25/61 (40%), Positives = 30/61 (49%)
Query: 251 LGAYCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQNRTRDFRYEKPGH 310
LGA+ +TEPG+GSD +KTKA K W LNG K +IT G VA
Sbjct: 121 LGAWGLTEPGSGSDAAALKTKAEKVEGGWRLNGTKQFITQGSVAGVYVVMARTDPPPSPE 180
Query: 311 Y 311
Sbjct: 181 R 181
Score = 44.6 bits (104), Expect = 5e-06
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGE 133
E+ +G ASDT + ED+ VP+E LLGE
Sbjct: 204 EEKLGLTASDTAQLILEDLFVPEEA-LLGE 232
>d1ukwa2 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydrogenase,
NM domains {Thermus thermophilus [TaxId: 274]}
Length = 227
Score = 57.0 bits (136), Expect = 4e-10
Identities = 25/51 (49%), Positives = 36/51 (70%)
Query: 49 ELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGH 99
L E Q++ QALAR+F +E I+PVA E+D E PW +++K HE+GL+N
Sbjct: 4 SLTEEQRQLQALARRFAKEVILPVAQEYDEKEEVPWPVIEKLHEVGLLNAI 54
Score = 46.6 bits (109), Expect = 9e-07
Identities = 23/45 (51%), Positives = 34/45 (75%)
Query: 254 YCVTEPGAGSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANWQN 298
+ ++EPG GSD +KT+A+++GD ++LNG KMWI+NGG A W
Sbjct: 122 FALSEPGNGSDAAALKTRAIRQGDHYVLNGTKMWISNGGEAEWVV 166
Score = 43.9 bits (102), Expect = 7e-06
Identities = 18/30 (60%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGE 133
MGQRAS T + FEDV+VP EN LGE
Sbjct: 198 HGKMGQRASGTYELVFEDVKVPVEN-RLGE 226
>d2c12a2 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium oxysporum
[TaxId: 5507]}
Length = 259
Score = 54.4 bits (129), Expect = 3e-09
Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 6/65 (9%)
Query: 49 ELNETQQEFQALARKFCREEIIPVAAEHDRTG------EYPWGIVKKAHELGLINGHIPA 102
+L+ +Q E + A+ F + +AE+ + ++A GLI +P
Sbjct: 4 KLSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPI 63
Query: 103 SEQNM 107
Sbjct: 64 PLGGT 68
Score = 44.0 bits (102), Expect = 9e-06
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 104 EQNMGQRASDTRGITFEDVRVPKENVL 130
+ G + F + VP EN+L
Sbjct: 231 PELAGHITTSGPHTRFTEFHVPHENLL 257
>d1r2ja2 e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygroscopicus
[TaxId: 1912]}
Length = 210
Score = 54.0 bits (128), Expect = 3e-09
Identities = 11/52 (21%), Positives = 22/52 (42%)
Query: 62 RKFCREEIIPVAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASD 113
+ + AAE D +GE P ++ + GL+ + A +G + +
Sbjct: 3 DALLTDLVGDRAAEWDTSGELPRDLLVRLGADGLLCAEVAAEHGGLGLGSRE 54
Score = 50.5 bits (119), Expect = 4e-08
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGEGA 135
+ G RA+ + + VRVP VL G GA
Sbjct: 179 PKPSGCRAAGHADLHLDQVRVPAGAVLAGSGA 210
>d1buca2 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM domains
{Megasphaera elsdenii [TaxId: 907]}
Length = 232
Score = 53.9 bits (128), Expect = 4e-09
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 49 ELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHEL 93
L + QQ+F LA F +++ P E D G Y ++ + L
Sbjct: 4 NLTDIQQDFLKLAHDFGEKKLAPTVTERDHKGIYDKELIDELLSL 48
Score = 44.7 bits (104), Expect = 4e-06
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Query: 72 VAAEHDRTGEYPWGIVKKAHELGLINGHIPASEQNMGQRASDTRGITFEDVRVPKENVLL 131
+ + GI E G E MG S T + F+DV+VP EN +L
Sbjct: 171 IVFAMTDKSKGNHGITAFILEDGTPGFTYGKKEDKMGIHTSQTMELVFQDVKVPAEN-ML 229
Query: 132 GE 133
GE
Sbjct: 230 GE 231
Score = 37.7 bits (86), Expect = 0.001
Identities = 24/47 (51%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Query: 251 LGAYCVTEPGAGSDVNGVKTKAVKKGD-EWILNGQKMWITNGGVANW 296
LGA+ +TEP AG+D +G +T A K D + LNG K++ITNGG A+
Sbjct: 123 LGAFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKIFITNGGAADI 169
>d2d29a1 a.29.3.1 (A:235-387) Acyl-CoA dehydrogenase {Thermus
thermophilus [TaxId: 274]}
Length = 153
Score = 50.7 bits (120), Expect = 2e-08
Identities = 25/54 (46%), Positives = 30/54 (55%)
Query: 134 GAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMY 187
G GF + D R +AA AVGL Q LD A YA R+AFG PIA +G+
Sbjct: 1 GKGFYDVLRVLDGGRIGIAAMAVGLGQAALDYALAYAKGREAFGRPIAEFEGVS 54
Score = 38.0 bits (87), Expect = 4e-04
Identities = 21/47 (44%), Positives = 25/47 (53%)
Query: 1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFY 47
+ D R +AA AVGL Q LD A YA R+AFG PIA +
Sbjct: 8 LRVLDGGRIGIAAMAVGLGQAALDYALAYAKGREAFGRPIAEFEGVS 54
>d1w07a1 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, domains 3
and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 189
Score = 50.2 bits (119), Expect = 5e-08
Identities = 11/80 (13%), Positives = 27/80 (33%), Gaps = 7/80 (8%)
Query: 138 KIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFG-------VPIAAHQGMYLKI 190
++ T R + A A R + AT+Y+ R+ FG + ++ ++
Sbjct: 3 QLVYGTMVYVRQTIVADASNALSRAVCIATRYSAVRRQFGAHNGGIETQVIDYKTQQNRL 62
Query: 191 QYVSIFEREIQLMLLGVHNC 210
+ + + +
Sbjct: 63 FPLLASAYAFRFVGEWLKWL 82
Score = 43.3 bits (101), Expect = 8e-06
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFG 37
T R + A A R + AT+Y+ R+ FG
Sbjct: 6 YGTMVYVRQTIVADASNALSRAVCIATRYSAVRRQFG 42
>d1r2ja1 a.29.3.1 (A:213-365) Protein FkbI {Streptomyces
hygroscopicus [TaxId: 1912]}
Length = 153
Score = 48.5 bits (114), Expect = 1e-07
Identities = 16/54 (29%), Positives = 24/54 (44%)
Query: 139 IAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQY 192
+ + R VA G VG+ + C A +A R+ FG P+ HQ + I
Sbjct: 5 LVAASLAYGRKSVAWGCVGILRACRTAAVAHARTREQFGRPLGDHQLVAGHIAD 58
Score = 44.6 bits (104), Expect = 2e-06
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFY 47
+ R VA G VG+ + C A +A R+ FG P+ HQ+
Sbjct: 7 AASLAYGRKSVAWGCVGILRACRTAAVAHARTREQFGRPLGDHQLVA 53
>d1jqia1 a.29.3.1 (A:235-387) Butyryl-CoA dehydrogenase, C-domain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 153
Score = 48.1 bits (113), Expect = 1e-07
Identities = 26/52 (50%), Positives = 32/52 (61%)
Query: 136 GFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMY 187
GFKIAM T D R +A+ A+G+AQ LD A KYA R AFG P+ Q +
Sbjct: 2 GFKIAMQTLDMGRIGIASQALGIAQASLDCAVKYAENRHAFGAPLTKLQNIQ 53
Score = 37.3 bits (85), Expect = 6e-04
Identities = 21/44 (47%), Positives = 26/44 (59%)
Query: 1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQ 44
M T D R +A+ A+G+AQ LD A KYA R AFG P+ Q
Sbjct: 7 MQTLDMGRIGIASQALGIAQASLDCAVKYAENRHAFGAPLTKLQ 50
>d1ivha1 a.29.3.1 (A:242-392) Isovaleryl-CoA dehydrogenase, C-domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 151
Score = 48.1 bits (113), Expect = 1e-07
Identities = 20/55 (36%), Positives = 25/55 (45%)
Query: 136 GFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKI 190
G + M D R +A G +GL Q LD Y R+AFG I Q M K+
Sbjct: 2 GVYVLMSGLDLERLVLAGGPLGLMQAVLDHTIPYLHVREAFGQKIGHFQLMQGKM 56
Score = 37.3 bits (85), Expect = 6e-04
Identities = 17/47 (36%), Positives = 21/47 (44%)
Query: 1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFY 47
M D R +A G +GL Q LD Y R+AFG I Q+
Sbjct: 7 MSGLDLERLVLAGGPLGLMQAVLDHTIPYLHVREAFGQKIGHFQLMQ 53
>d2c12a1 a.29.3.1 (A:261-430) Nitroalkane oxidase {Fusarium
oxysporum [TaxId: 5507]}
Length = 170
Score = 48.4 bits (114), Expect = 2e-07
Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 1/69 (1%)
Query: 136 GFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGV-PIAAHQGMYLKIQYVS 194
+ F + V A A+G A+ +EA +A G I HQ + K+
Sbjct: 5 AQGLVETAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKLIDCK 64
Query: 195 IFEREIQLM 203
I +L+
Sbjct: 65 IRLETSRLL 73
Score = 44.9 bits (105), Expect = 2e-06
Identities = 12/84 (14%), Positives = 24/84 (28%)
Query: 1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQEFQAL 60
F + V A A+G A+ +EA +A G ++ +
Sbjct: 10 ETAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKLIDCKIRLET 69
Query: 61 ARKFCREEIIPVAAEHDRTGEYPW 84
+R + + + E
Sbjct: 70 SRLLVWKAVTTLEDEALEWKVKLE 93
>d1siqa2 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH {Human
(Homo sapiens) [TaxId: 9606]}
Length = 236
Score = 48.9 bits (115), Expect = 2e-07
Identities = 14/36 (38%), Positives = 17/36 (47%)
Query: 99 HIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEG 134
P + RAS T I + V VP+ENVL G
Sbjct: 200 SAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGAS 235
Score = 47.7 bits (112), Expect = 5e-07
Identities = 8/45 (17%), Positives = 19/45 (42%)
Query: 48 SELNETQQEFQALARKFCREEIIPVAAEHDRTGEYPWGIVKKAHE 92
+L + + R +C+E ++P +R + I+ + E
Sbjct: 12 EQLTTDEILIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGE 56
Score = 26.2 bits (56), Expect = 5.5
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 251 LGAYCVTEPGA--GSDVNGVKTKAVKKGDEWILNGQKMWITNGGVANW 296
LG + +TEP + + + LNG K WITN +A+
Sbjct: 128 LGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADL 175
>d1rx0a1 a.29.3.1 (A:241-393) Isobutyryl-CoA dehydrogenase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 153
Score = 47.3 bits (111), Expect = 2e-07
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 134 GAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMY 187
G GF IA+ + R +A+ ++G A + + RK FG P+A++Q +
Sbjct: 1 GQGFLIAVRGLNGGRINIASCSLGAAHASVILTRDHLNVRKQFGEPLASNQYLQ 54
Score = 36.1 bits (82), Expect = 0.002
Identities = 14/84 (16%), Positives = 27/84 (32%)
Query: 1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQEFQAL 60
+ + R +A+ ++G A + + RK FG P+A++Q L + A
Sbjct: 8 VRGLNGGRINIASCSLGAAHASVILTRDHLNVRKQFGEPLASNQYLQFTLADMATRLVAA 67
Query: 61 ARKFCREEIIPVAAEHDRTGEYPW 84
+ D
Sbjct: 68 RLMVRNAAVALQEERKDAVALCSM 91
>d1buca1 a.29.3.1 (A:233-383) Butyryl-CoA dehydrogenase, C-domain
{Megasphaera elsdenii [TaxId: 907]}
Length = 151
Score = 47.2 bits (111), Expect = 3e-07
Identities = 25/77 (32%), Positives = 40/77 (51%)
Query: 134 GAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYV 193
G GFKIAM T D R VAA A+G+A+ L +A +Y+ +R FG P+ Q + K+ +
Sbjct: 1 GKGFKIAMMTLDGGRIGVAAQALGIAEAALADAVEYSKQRVQFGKPLCKFQSISFKLADM 60
Query: 194 SIFEREIQLMLLGVHNC 210
+ + ++
Sbjct: 61 KMQIEAARNLVYKAACK 77
Score = 36.4 bits (83), Expect = 0.001
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNE 52
M T D R VAA A+G+A+ L +A +Y+ +R FG P+ Q +L +
Sbjct: 8 MMTLDGGRIGVAAQALGIAEAALADAVEYSKQRVQFGKPLCKFQSISFKLAD 59
>d1ukwa1 a.29.3.1 (A:259-410) Medium chain acyl-CoA dehydrogenase,
C-domain {Thermus thermophilus [TaxId: 274]}
Length = 152
Score = 46.4 bits (109), Expect = 4e-07
Identities = 36/53 (67%), Positives = 42/53 (79%)
Query: 134 GAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGM 186
G GFKIAM T +KTR PVAAG+VG+A+R LDEA KYA ER+AFG PIA Q +
Sbjct: 1 GEGFKIAMQTLNKTRIPVAAGSVGVARRALDEARKYAKEREAFGEPIANFQAI 53
Score = 34.1 bits (77), Expect = 0.008
Identities = 30/45 (66%), Positives = 35/45 (77%)
Query: 1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQV 45
M T +KTR PVAAG+VG+A+R LDEA KYA ER+AFG PIA Q
Sbjct: 8 MQTLNKTRIPVAAGSVGVARRALDEARKYAKEREAFGEPIANFQA 52
>d3mdea1 a.29.3.1 (A:242-395) Medium chain acyl-CoA dehydrogenase,
C-domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 154
Score = 46.2 bits (108), Expect = 6e-07
Identities = 45/58 (77%), Positives = 48/58 (82%)
Query: 134 GAGFKIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQ 191
GAGFKIAM TFDKTRPPVAAGAVGLAQR LDEATKYALERK FG +A HQG+ +
Sbjct: 1 GAGFKIAMGTFDKTRPPVAAGAVGLAQRALDEATKYALERKTFGKLLAEHQGISFLLA 58
Score = 34.6 bits (78), Expect = 0.006
Identities = 39/66 (59%), Positives = 44/66 (66%)
Query: 1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQEFQAL 60
M TFDKTRPPVAAGAVGLAQR LDEATKYALERK FG +A HQ L + + +
Sbjct: 8 MGTFDKTRPPVAAGAVGLAQRALDEATKYALERKTFGKLLAEHQGISFLLADMAMKVELA 67
Query: 61 ARKFCR 66
+ R
Sbjct: 68 RLSYQR 73
>d2ddha3 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, domains
1 and 2 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 267
Score = 46.3 bits (109), Expect = 1e-06
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 104 EQNMGQRASDTRGITFEDVRVPKENVLLGEG 134
G D + ++ R+P+EN+L+
Sbjct: 227 GPKFGYEEMDNGYLKMDNYRIPRENMLMKYA 257
>d1u8va2 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase AbfD, NM
domains {Clostridium aminobutyricum [TaxId: 33953]}
Length = 275
Score = 44.2 bits (104), Expect = 7e-06
Identities = 8/53 (15%), Positives = 18/53 (33%), Gaps = 8/53 (15%)
Query: 252 GAYCVTEPGAGSDV-------NGVKTKAVKK-GDEWILNGQKMWITNGGVANW 296
+T+P + + + V+K D ++ G K T ++
Sbjct: 145 VDGAMTDPKGDRGLAPSAQKDPDLFLRIVEKREDGIVVRGAKAHQTGSINSHE 197
Score = 38.1 bits (88), Expect = 8e-04
Identities = 6/47 (12%), Positives = 15/47 (31%), Gaps = 15/47 (31%)
Query: 100 IPASEQNMGQRASDTRG---------------ITFEDVRVPKENVLL 131
+ Q+ R + + F++V +P + + L
Sbjct: 228 MIYGRQSCDTRKMEEGADIDLGNKQFGGQEALVVFDNVFIPNDRIFL 274
>d1w07a3 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domains 1 and
2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 271
Score = 41.3 bits (96), Expect = 6e-05
Identities = 9/41 (21%), Positives = 18/41 (43%)
Query: 94 GLINGHIPASEQNMGQRASDTRGITFEDVRVPKENVLLGEG 134
+ G I N + D + F+ VR+P++ +L+
Sbjct: 218 NITVGDIGTKMGNGAYNSMDNGFLMFDHVRIPRDQMLMRLS 258
>d2ddha1 a.29.3.2 (A:278-460) Peroxisomal acyl-CoA oxidase-II,
domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 183
Score = 39.4 bits (91), Expect = 2e-04
Identities = 8/51 (15%), Positives = 14/51 (27%), Gaps = 7/51 (13%)
Query: 147 TRPPVAAGAVGLAQRCLDEATKYALERKAFG-------VPIAAHQGMYLKI 190
R + A + A +Y+ R+ I Q K+
Sbjct: 4 VRSFLVGNAAQSLSKACTIAIRYSAVRRQSEIKQSEPEPQILDFQTQQYKL 54
Score = 39.0 bits (90), Expect = 2e-04
Identities = 5/33 (15%), Positives = 11/33 (33%)
Query: 7 TRPPVAAGAVGLAQRCLDEATKYALERKAFGVP 39
R + A + A +Y+ R+ +
Sbjct: 4 VRSFLVGNAAQSLSKACTIAIRYSAVRRQSEIK 36
>d1siqa1 a.29.3.1 (A:239-392) Glutaryl-CoA dehydrogenase GCDH {Human
(Homo sapiens) [TaxId: 9606]}
Length = 154
Score = 38.4 bits (88), Expect = 3e-04
Identities = 18/66 (27%), Positives = 30/66 (45%)
Query: 138 KIAMDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQGMYLKIQYVSIFE 197
+ R +A G +G ++ CL A +YAL+R FGVP+A +Q + K+ +
Sbjct: 2 GGPFGCLNNARYGIAWGVLGASEFCLHTARQYALDRMQFGVPLARNQLIQKKLADMLTEI 61
Query: 198 REIQLM 203
Sbjct: 62 TLGLHA 67
Score = 37.7 bits (86), Expect = 6e-04
Identities = 19/66 (28%), Positives = 32/66 (48%)
Query: 1 MDTFDKTRPPVAAGAVGLAQRCLDEATKYALERKAFGVPIAAHQVFYSELNETQQEFQAL 60
+ R +A G +G ++ CL A +YAL+R FGVP+A +Q+ +L + E
Sbjct: 5 FGCLNNARYGIAWGVLGASEFCLHTARQYALDRMQFGVPLARNQLIQKKLADMLTEITLG 64
Query: 61 ARKFCR 66
+
Sbjct: 65 LHACLQ 70
>d1xdpa2 d.322.1.2 (A:107-314) Polyphosphate kinase, PPK
{Escherichia coli [TaxId: 562]}
Length = 208
Score = 28.0 bits (62), Expect = 1.3
Identities = 4/26 (15%), Positives = 11/26 (42%), Gaps = 3/26 (11%)
Query: 47 YSELNETQQEFQALARKFCREEIIPV 72
+L+ QQ + R + ++ +
Sbjct: 6 ERQLSVNQQNW---LRHYFKQYLRQH 28
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.411
Gapped
Lambda K H
0.267 0.0441 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,171,613
Number of extensions: 52951
Number of successful extensions: 171
Number of sequences better than 10.0: 1
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 57
Length of query: 312
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 227
Effective length of database: 1,240,546
Effective search space: 281603942
Effective search space used: 281603942
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.9 bits)