BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10340
(98 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9JI85|NUCB2_RAT Nucleobindin-2 OS=Rattus norvegicus GN=Nucb2 PE=2 SV=1
Length = 420
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 49/67 (73%), Gaps = 3/67 (4%)
Query: 9 QVHHPGSKKQLEEVWQEQDHMGNTEFNPKAFFAMHDLDGNHVWDEEEVKMLFLKELDKMY 68
+V+HPGSK QL+EVW+E D + +F+PK FF +HD++ + DE+E++ LF KELDK+Y
Sbjct: 219 KVNHPGSKDQLKEVWEETDGLDPNDFDPKTFFKLHDVNNDGFLDEQELEALFTKELDKVY 278
Query: 69 KEGMPQN 75
PQN
Sbjct: 279 N---PQN 282
>sp|Q0P569|NUCB1_BOVIN Nucleobindin-1 OS=Bos taurus GN=NUCB1 PE=2 SV=1
Length = 474
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 52/76 (68%)
Query: 9 QVHHPGSKKQLEEVWQEQDHMGNTEFNPKAFFAMHDLDGNHVWDEEEVKMLFLKELDKMY 68
+V+ PGS+ QL+EVW+E D + FNPK FF +HD++ + V DE+E++ LF KEL+K+Y
Sbjct: 215 KVNVPGSQAQLKEVWEELDGLDPNRFNPKTFFILHDINSDGVLDEQELEALFTKELEKVY 274
Query: 69 KEGMPQNDLMERAEER 84
+D+ E EER
Sbjct: 275 DPKNEDDDMREMEEER 290
>sp|P81117|NUCB2_MOUSE Nucleobindin-2 OS=Mus musculus GN=Nucb2 PE=1 SV=2
Length = 420
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 49/67 (73%), Gaps = 3/67 (4%)
Query: 9 QVHHPGSKKQLEEVWQEQDHMGNTEFNPKAFFAMHDLDGNHVWDEEEVKMLFLKELDKMY 68
+V+HPGSK QL+EVW+E D + +F+PK FF +HD++ + DE+E++ LF +EL+K+Y
Sbjct: 219 KVNHPGSKDQLKEVWEETDGLDPNDFDPKTFFKLHDVNNDGFLDEQELEALFTRELEKVY 278
Query: 69 KEGMPQN 75
PQN
Sbjct: 279 N---PQN 282
>sp|P80303|NUCB2_HUMAN Nucleobindin-2 OS=Homo sapiens GN=NUCB2 PE=1 SV=2
Length = 420
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 46/60 (76%)
Query: 9 QVHHPGSKKQLEEVWQEQDHMGNTEFNPKAFFAMHDLDGNHVWDEEEVKMLFLKELDKMY 68
+V+HPGSK QL+EVW+E D + +F+PK FF +HD++ + DE+E++ LF KEL+K+Y
Sbjct: 219 KVNHPGSKDQLKEVWEETDGLDPNDFDPKTFFKLHDVNSDGFLDEQELEALFTKELEKVY 278
>sp|Q63083|NUCB1_RAT Nucleobindin-1 OS=Rattus norvegicus GN=Nucb1 PE=1 SV=1
Length = 459
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 45/60 (75%)
Query: 9 QVHHPGSKKQLEEVWQEQDHMGNTEFNPKAFFAMHDLDGNHVWDEEEVKMLFLKELDKMY 68
+V+ PGS+ QL+EVW+E D + FNPK FF +HD++ + V DE+E++ LF KEL+K+Y
Sbjct: 217 KVNVPGSQAQLKEVWEELDGLDPNRFNPKTFFILHDINSDGVLDEQELEALFTKELEKVY 276
>sp|Q02819|NUCB1_MOUSE Nucleobindin-1 OS=Mus musculus GN=Nucb1 PE=1 SV=2
Length = 459
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 45/60 (75%)
Query: 9 QVHHPGSKKQLEEVWQEQDHMGNTEFNPKAFFAMHDLDGNHVWDEEEVKMLFLKELDKMY 68
+V+ PGS+ QL+EVW+E D + FNPK FF +HD++ + V DE+E++ LF KEL+K+Y
Sbjct: 217 KVNVPGSQAQLKEVWEELDGLDPNRFNPKTFFILHDINSDGVLDEQELEALFTKELEKVY 276
>sp|Q5R4U1|NUCB1_PONAB Nucleobindin-1 OS=Pongo abelii GN=NUCB1 PE=2 SV=1
Length = 463
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 45/60 (75%)
Query: 9 QVHHPGSKKQLEEVWQEQDHMGNTEFNPKAFFAMHDLDGNHVWDEEEVKMLFLKELDKMY 68
+V+ PGS+ QL+EVW+E D + FNPK FF +HD++ + V DE+E++ LF KEL+K+Y
Sbjct: 218 KVNVPGSQAQLKEVWEELDGLDPNRFNPKTFFILHDINSDGVLDEQELEALFTKELEKVY 277
>sp|Q02818|NUCB1_HUMAN Nucleobindin-1 OS=Homo sapiens GN=NUCB1 PE=1 SV=4
Length = 461
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 45/60 (75%)
Query: 9 QVHHPGSKKQLEEVWQEQDHMGNTEFNPKAFFAMHDLDGNHVWDEEEVKMLFLKELDKMY 68
+V+ PGS+ QL+EVW+E D + FNPK FF +HD++ + V DE+E++ LF KEL+K+Y
Sbjct: 218 KVNVPGSQAQLKEVWEELDGLDPNRFNPKTFFILHDINSDGVLDEQELEALFTKELEKVY 277
>sp|A0MSX9|IL7RA_HORSE Interleukin-7 receptor subunit alpha OS=Equus caballus GN=IL7R PE=2
SV=1
Length = 458
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 13 PGSKKQLEEVWQEQDHMGNTEFNPKAFF--AMHDLDGNHVWDEEE--VKMLFLKELDKMY 68
P KK LE++ ++ N FNP++F +H +DG DE E ++ F +LD
Sbjct: 276 PDHKKTLEQLCKKPKKNLNVSFNPESFLDCQIHKVDGIQARDEAEAFLQDTFPPQLDDSE 335
Query: 69 KE 70
K+
Sbjct: 336 KQ 337
>sp|Q02038|NEUL_PIG Neurolysin, mitochondrial OS=Sus scrofa GN=NLN PE=1 SV=1
Length = 704
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 7/52 (13%)
Query: 48 NHVWDEEEVKMLFLKELDKMYKEGMP-QNDLMERAEERQTVFTGLFCSLRAI 98
N VWD + L+ L K YK+G P +DL+E+ + V TGL +LR I
Sbjct: 534 NWVWDTDS-----LRRLSKHYKDGSPITDDLLEKLVASRLVNTGLL-TLRQI 579
>sp|Q5R9V6|NEUL_PONAB Neurolysin, mitochondrial OS=Pongo abelii GN=NLN PE=2 SV=1
Length = 704
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 7/52 (13%)
Query: 48 NHVWDEEEVKMLFLKELDKMYKEGMP-QNDLMERAEERQTVFTGLFCSLRAI 98
N VWD + L+ L K YK+G P +DL+E+ + + TGL +LR I
Sbjct: 534 NWVWDVDS-----LRRLSKHYKDGSPISDDLLEKLVASRLINTGLL-TLRQI 579
>sp|O01939|MST_DROME Protein misato OS=Drosophila melanogaster GN=mst PE=2 SV=1
Length = 574
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 47 GNHVWDEEEVKMLFLKELDKMYKEGMPQNDLMER 80
G H W+++E + E +++ +E +P ND++ R
Sbjct: 20 GTHFWNQQEANFRYGDESEQVAEEQLPNNDILYR 53
>sp|P42676|NEUL_RAT Neurolysin, mitochondrial OS=Rattus norvegicus GN=Nln PE=1 SV=1
Length = 704
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 7/52 (13%)
Query: 48 NHVWDEEEVKMLFLKELDKMYKEGMPQND-LMERAEERQTVFTGLFCSLRAI 98
N VWD + L++L K YK+G P D L+E+ + V TGL +LR I
Sbjct: 534 NWVWDVDS-----LRKLSKHYKDGHPITDELLEKLVASRLVNTGLL-TLRQI 579
>sp|Q2UCU3|BGALA_ASPOR Probable beta-galactosidase A OS=Aspergillus oryzae (strain ATCC
42149 / RIB 40) GN=lacA PE=3 SV=1
Length = 1005
Score = 28.9 bits (63), Expect = 9.1, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 6/40 (15%)
Query: 41 AMHDLDGNHVWDEE------EVKMLFLKELDKMYKEGMPQ 74
A H +D N +W E E+K+ LK+LD Y + +P+
Sbjct: 646 ASHTVDKNGIWSSEVKYAAPEIKLPGLKDLDWKYLDTLPE 685
>sp|B8N6V7|BGALA_ASPFN Probable beta-galactosidase A OS=Aspergillus flavus (strain ATCC
200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167)
GN=lacA PE=3 SV=1
Length = 1005
Score = 28.9 bits (63), Expect = 9.1, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 6/40 (15%)
Query: 41 AMHDLDGNHVWDEE------EVKMLFLKELDKMYKEGMPQ 74
A H +D N +W E E+K+ LK+LD Y + +P+
Sbjct: 646 ASHTVDKNGIWSSEVKYAAPEIKLPGLKDLDWKYLDTLPE 685
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.134 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,455,195
Number of Sequences: 539616
Number of extensions: 1525935
Number of successful extensions: 3724
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 3711
Number of HSP's gapped (non-prelim): 30
length of query: 98
length of database: 191,569,459
effective HSP length: 67
effective length of query: 31
effective length of database: 155,415,187
effective search space: 4817870797
effective search space used: 4817870797
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)