Query psy10340
Match_columns 98
No_of_seqs 103 out of 134
Neff 4.0
Searched_HMMs 46136
Date Fri Aug 16 15:28:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10340.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10340hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3866|consensus 100.0 5.7E-46 1.2E-50 303.3 8.8 96 2-97 212-307 (442)
2 PF13405 EF-hand_6: EF-hand do 97.2 0.00034 7.4E-09 37.9 2.2 26 37-62 3-28 (31)
3 PF13499 EF-hand_7: EF-hand do 97.2 0.00078 1.7E-08 40.6 4.1 26 37-62 3-28 (66)
4 PF00036 EF-hand_1: EF hand; 96.9 0.0007 1.5E-08 37.2 2.1 25 37-61 3-27 (29)
5 PF13202 EF-hand_5: EF hand; P 96.7 0.0012 2.6E-08 35.0 2.0 22 38-59 3-24 (25)
6 KOG4065|consensus 96.7 0.0019 4.2E-08 47.6 3.5 57 38-96 71-127 (144)
7 cd05027 S-100B S-100B: S-100B 95.6 0.03 6.5E-07 37.1 4.6 42 38-79 12-55 (88)
8 KOG0027|consensus 94.8 0.049 1.1E-06 38.2 4.1 32 37-68 88-119 (151)
9 KOG0034|consensus 94.7 0.089 1.9E-06 39.8 5.4 50 39-97 109-158 (187)
10 cd05026 S-100Z S-100Z: S-100Z 94.5 0.091 2E-06 34.7 4.6 29 38-66 14-44 (93)
11 cd05025 S-100A1 S-100A1: S-100 94.5 0.11 2.4E-06 33.7 4.8 30 37-66 12-43 (92)
12 cd00052 EH Eps15 homology doma 93.9 0.083 1.8E-06 31.1 3.1 26 37-62 2-27 (67)
13 PF13833 EF-hand_8: EF-hand do 93.8 0.074 1.6E-06 31.0 2.8 44 15-61 6-52 (54)
14 smart00054 EFh EF-hand, calciu 93.8 0.096 2.1E-06 24.8 2.8 25 37-61 3-27 (29)
15 cd00213 S-100 S-100: S-100 dom 93.7 0.18 3.9E-06 32.1 4.7 27 38-64 12-40 (88)
16 PF08414 NADPH_Ox: Respiratory 93.6 0.0072 1.6E-07 42.6 -2.2 22 12-36 79-100 (100)
17 cd00252 SPARC_EC SPARC_EC; ext 93.0 0.13 2.9E-06 36.0 3.4 24 38-61 84-107 (116)
18 PF14788 EF-hand_10: EF hand; 92.4 0.11 2.4E-06 32.6 2.1 26 36-61 23-48 (51)
19 cd00252 SPARC_EC SPARC_EC; ext 92.3 0.13 2.9E-06 36.1 2.6 22 39-60 53-74 (116)
20 cd05031 S-100A10_like S-100A10 92.0 0.37 7.9E-06 31.4 4.4 27 38-64 12-40 (94)
21 smart00027 EH Eps15 homology d 91.8 0.26 5.7E-06 32.1 3.5 25 38-62 14-38 (96)
22 cd05022 S-100A13 S-100A13: S-1 91.5 0.2 4.3E-06 33.5 2.7 29 37-65 11-40 (89)
23 PF13499 EF-hand_7: EF-hand do 91.4 0.18 3.9E-06 30.1 2.2 23 38-60 44-66 (66)
24 KOG0044|consensus 90.6 0.53 1.1E-05 36.0 4.6 29 40-68 106-134 (193)
25 KOG0039|consensus 89.2 0.44 9.4E-06 41.8 3.6 60 29-97 11-72 (646)
26 KOG0031|consensus 89.1 0.57 1.2E-05 35.8 3.7 28 39-67 37-64 (171)
27 cd00051 EFh EF-hand, calcium b 88.0 0.77 1.7E-05 25.0 2.9 24 38-61 4-27 (63)
28 cd05029 S-100A6 S-100A6: S-100 87.8 1.3 2.7E-05 29.3 4.3 27 38-64 14-42 (88)
29 KOG0027|consensus 84.9 1 2.2E-05 31.5 2.8 25 37-61 11-35 (151)
30 cd05023 S-100A11 S-100A11: S-1 84.6 2.2 4.7E-05 28.3 4.2 32 38-69 13-46 (89)
31 PTZ00184 calmodulin; Provision 82.5 1.2 2.7E-05 29.2 2.3 25 37-61 87-111 (149)
32 PF12763 EF-hand_4: Cytoskelet 81.9 1.2 2.7E-05 30.7 2.2 19 38-56 47-65 (104)
33 PTZ00183 centrin; Provisional 81.0 1.8 3.9E-05 29.0 2.8 24 38-61 21-44 (158)
34 PTZ00184 calmodulin; Provision 80.7 2.1 4.5E-05 28.1 3.0 24 38-61 15-38 (149)
35 COG5126 FRQ1 Ca2+-binding prot 80.3 3.3 7.1E-05 31.0 4.2 39 8-60 8-46 (160)
36 smart00027 EH Eps15 homology d 79.8 3.2 6.9E-05 26.9 3.6 45 15-62 28-72 (96)
37 PTZ00183 centrin; Provisional 79.8 2.2 4.7E-05 28.6 2.9 24 38-61 94-117 (158)
38 KOG4223|consensus 79.7 1.1 2.4E-05 37.2 1.6 24 38-61 245-268 (325)
39 PF10591 SPARC_Ca_bdg: Secrete 78.9 1.1 2.5E-05 31.0 1.3 21 37-57 91-111 (113)
40 KOG2562|consensus 78.6 3.7 8E-05 35.9 4.5 38 37-74 354-391 (493)
41 PF00404 Dockerin_1: Dockerin 75.4 3.4 7.3E-05 21.5 2.2 16 44-59 1-16 (21)
42 COG5126 FRQ1 Ca2+-binding prot 74.0 5.5 0.00012 29.8 3.9 24 38-61 96-119 (160)
43 cd05031 S-100A10_like S-100A10 73.8 7 0.00015 25.3 3.9 49 14-62 27-79 (94)
44 cd05026 S-100Z S-100Z: S-100Z 73.0 5 0.00011 26.4 3.1 49 14-62 29-81 (93)
45 cd05024 S-100A10 S-100A10: A s 70.4 13 0.00028 25.4 4.8 48 14-62 24-76 (91)
46 KOG0028|consensus 69.4 7.7 0.00017 29.8 3.8 45 37-86 109-153 (172)
47 KOG4251|consensus 69.3 2.5 5.3E-05 35.1 1.2 34 28-61 134-167 (362)
48 PF10591 SPARC_Ca_bdg: Secrete 69.0 0.64 1.4E-05 32.2 -2.0 23 39-61 59-81 (113)
49 KOG2643|consensus 68.2 3.1 6.8E-05 36.2 1.6 24 38-61 237-260 (489)
50 PRK12309 transaldolase/EF-hand 67.1 5.7 0.00012 33.2 2.9 20 38-57 338-357 (391)
51 cd05023 S-100A11 S-100A11: S-1 66.3 8.1 0.00017 25.5 3.0 48 14-62 28-80 (89)
52 cd05029 S-100A6 S-100A6: S-100 65.6 15 0.00033 24.1 4.2 53 14-68 29-84 (88)
53 cd05022 S-100A13 S-100A13: S-1 64.3 9.3 0.0002 25.4 3.0 48 14-62 26-75 (89)
54 cd05024 S-100A10 S-100A10: A s 62.8 17 0.00036 24.9 4.1 27 46-72 19-45 (91)
55 PLN02964 phosphatidylserine de 62.0 20 0.00043 32.1 5.5 24 38-61 183-206 (644)
56 PLN02964 phosphatidylserine de 61.8 8.1 0.00018 34.5 3.0 26 37-62 218-243 (644)
57 PF10197 Cir_N: N-terminal dom 61.6 6.5 0.00014 22.8 1.7 14 11-24 2-15 (37)
58 KOG1029|consensus 60.5 7 0.00015 36.7 2.5 29 38-66 233-262 (1118)
59 cd05030 calgranulins Calgranul 59.9 13 0.00027 24.2 3.0 53 14-68 27-84 (88)
60 cd05025 S-100A1 S-100A1: S-100 58.6 14 0.00031 23.6 3.1 49 14-62 28-80 (92)
61 KOG0031|consensus 57.7 17 0.00036 27.9 3.7 25 38-62 105-129 (171)
62 KOG0044|consensus 57.4 9.6 0.00021 29.2 2.4 25 38-62 151-175 (193)
63 KOG4223|consensus 57.2 13 0.00027 31.1 3.2 45 23-67 64-110 (325)
64 KOG0030|consensus 54.6 44 0.00096 25.2 5.5 58 37-94 14-81 (152)
65 KOG2643|consensus 52.6 25 0.00055 30.8 4.4 36 38-73 429-465 (489)
66 PRK12309 transaldolase/EF-hand 52.6 13 0.00028 31.1 2.7 25 37-61 360-384 (391)
67 KOG0041|consensus 51.7 14 0.00029 29.8 2.5 25 38-62 103-127 (244)
68 cd05027 S-100B S-100B: S-100B 49.9 22 0.00047 23.3 2.9 26 37-62 54-79 (88)
69 KOG1707|consensus 48.6 14 0.00031 33.2 2.4 24 38-61 319-342 (625)
70 cd05030 calgranulins Calgranul 47.6 55 0.0012 21.1 4.6 27 39-65 13-41 (88)
71 COG5533 UBP5 Ubiquitin C-termi 47.3 22 0.00047 30.4 3.1 57 33-89 140-201 (415)
72 PF01234 NNMT_PNMT_TEMT: NNMT/ 45.6 22 0.00048 28.1 2.8 41 33-73 15-55 (256)
73 KOG0034|consensus 44.1 23 0.00049 26.9 2.6 25 38-62 151-175 (187)
74 PF15178 TOM_sub5: Mitochondri 42.2 21 0.00045 22.5 1.8 16 81-96 14-29 (51)
75 PF06226 DUF1007: Protein of u 42.2 32 0.0007 25.9 3.2 29 36-64 52-80 (212)
76 PF09912 DUF2141: Uncharacteri 40.8 12 0.00025 25.8 0.5 18 38-55 56-73 (112)
77 smart00426 TEA TEA domain. 39.7 42 0.00092 22.2 3.0 27 46-74 1-27 (68)
78 PF14658 EF-hand_9: EF-hand do 39.0 61 0.0013 21.0 3.7 24 38-61 2-25 (66)
79 KOG1707|consensus 37.9 21 0.00044 32.3 1.7 23 38-60 199-221 (625)
80 KOG0038|consensus 36.8 22 0.00048 27.4 1.6 25 38-62 112-136 (189)
81 PF15080 DUF4547: Domain of un 32.3 57 0.0012 25.4 3.2 49 18-68 99-151 (196)
82 KOG3555|consensus 31.0 34 0.00073 29.5 1.8 24 38-61 254-277 (434)
83 PF05820 DUF845: Baculovirus p 28.8 24 0.00051 25.7 0.5 8 36-43 68-75 (119)
84 TIGR01748 rhaA L-rhamnose isom 28.5 60 0.0013 28.0 3.0 64 23-89 117-202 (414)
85 PF01023 S_100: S-100/ICaBP ty 27.5 52 0.0011 19.3 1.8 21 47-67 21-41 (44)
86 PF00249 Myb_DNA-binding: Myb- 25.2 91 0.002 17.7 2.5 21 49-71 2-22 (48)
87 KOG3478|consensus 25.0 1.5E+02 0.0032 21.6 4.0 30 58-93 79-108 (120)
88 KOG0038|consensus 24.2 67 0.0015 24.8 2.3 20 43-62 158-177 (189)
89 PF15005 IZUMO: Izumo sperm-eg 23.6 2.1E+02 0.0045 21.5 4.8 55 39-96 49-107 (160)
90 PF15304 AKAP2_C: A-kinase anc 23.4 1.2E+02 0.0027 25.2 3.8 27 56-92 211-237 (344)
91 PRK11546 zraP zinc resistance 23.2 1.4E+02 0.0031 22.0 3.8 32 63-94 76-108 (143)
92 COG0501 HtpX Zn-dependent prot 22.9 81 0.0018 23.7 2.5 21 50-70 151-171 (302)
93 smart00271 DnaJ DnaJ molecular 22.9 1.6E+02 0.0035 16.7 6.0 34 38-74 2-35 (60)
94 PRK14290 chaperone protein Dna 22.8 2.9E+02 0.0063 22.4 5.8 37 37-76 3-39 (365)
95 PF00550 PP-binding: Phosphopa 22.5 51 0.0011 19.2 1.1 24 17-40 1-25 (67)
96 COG1448 TyrB Aspartate/tyrosin 21.8 1.1E+02 0.0023 26.4 3.2 35 50-97 297-331 (396)
97 PLN02736 long-chain acyl-CoA s 21.7 65 0.0014 27.1 1.9 25 45-69 624-648 (651)
98 cd09236 V_AnPalA_UmRIM20_like 21.2 76 0.0017 25.6 2.2 23 47-70 243-265 (353)
99 PF01839 FG-GAP: FG-GAP repeat 21.2 41 0.0009 18.7 0.5 10 43-52 8-17 (34)
No 1
>KOG3866|consensus
Probab=100.00 E-value=5.7e-46 Score=303.29 Aligned_cols=96 Identities=39% Similarity=0.670 Sum_probs=94.6
Q ss_pred CccccCCccCCCCChHHHHHHHHhhcCCCCCCCCchhhhhhhcCCCCCCCCHHHHHHHHHHHhhhhhCCCCCcchHHHHH
Q psy10340 2 RFSTLTFQVHHPGSKKQLEEVWQEQDHMGNTEFNPKAFFAMHDLDGNHVWDEEEVKMLFLKELDKMYKEGMPQNDLMERA 81 (98)
Q Consensus 2 ~~~~~h~ki~hPGSk~ql~evWeeed~i~~~~FDp~tFF~lHD~n~DG~~d~~El~ai~~kEl~K~y~~~~~edd~~e~~ 81 (98)
|+|++||||+||||++||++||++.||++++.|||+|||.|||+||||+|++.||+|||+|||+|||+|.|++|||+||+
T Consensus 212 krH~~HpKvnhPGSkdQLkEVWEE~DgLdpn~fdPKTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~Eme 291 (442)
T KOG3866|consen 212 KRHNDHPKVNHPGSKDQLKEVWEESDGLDPNQFDPKTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEME 291 (442)
T ss_pred HhhccCccCCCCCcHHHHHHHHHHhcCCCcccCCcchheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccc
Q psy10340 82 EERQTVFTGLFCSLRA 97 (98)
Q Consensus 82 eE~~rMRehv~~e~~~ 97 (98)
|||.|||||||++||.
T Consensus 292 EErlRMREHVMk~vDt 307 (442)
T KOG3866|consen 292 EERLRMREHVMKQVDT 307 (442)
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999999999984
No 2
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.17 E-value=0.00034 Score=37.86 Aligned_cols=26 Identities=35% Similarity=0.537 Sum_probs=22.7
Q ss_pred hhhhhhhcCCCCCCCCHHHHHHHHHH
Q psy10340 37 KAFFAMHDLDGNHVWDEEEVKMLFLK 62 (98)
Q Consensus 37 ~tFF~lHD~n~DG~~d~~El~ai~~k 62 (98)
+.+|.++|.|+||+|+.+|+.+++.+
T Consensus 3 ~~~F~~~D~d~dG~I~~~el~~~l~~ 28 (31)
T PF13405_consen 3 REAFKMFDKDGDGFIDFEELRAILRK 28 (31)
T ss_dssp HHHHHHH-TTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 46899999999999999999999874
No 3
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=97.16 E-value=0.00078 Score=40.61 Aligned_cols=26 Identities=27% Similarity=0.370 Sum_probs=23.8
Q ss_pred hhhhhhhcCCCCCCCCHHHHHHHHHH
Q psy10340 37 KAFFAMHDLDGNHVWDEEEVKMLFLK 62 (98)
Q Consensus 37 ~tFF~lHD~n~DG~~d~~El~ai~~k 62 (98)
+..|.+.|.|+||+++.+||..++..
T Consensus 3 ~~~F~~~D~d~~G~i~~~el~~~~~~ 28 (66)
T PF13499_consen 3 KEAFKKFDKDGDGYISKEELRRALKH 28 (66)
T ss_dssp HHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHcCCccCCCCHHHHHHHHHH
Confidence 46799999999999999999999985
No 4
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=96.93 E-value=0.0007 Score=37.15 Aligned_cols=25 Identities=36% Similarity=0.375 Sum_probs=22.6
Q ss_pred hhhhhhhcCCCCCCCCHHHHHHHHH
Q psy10340 37 KAFFAMHDLDGNHVWDEEEVKMLFL 61 (98)
Q Consensus 37 ~tFF~lHD~n~DG~~d~~El~ai~~ 61 (98)
+..|...|.|+||+++.+|+.+++.
T Consensus 3 ~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 3 KEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 3579999999999999999999876
No 5
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=96.74 E-value=0.0012 Score=35.04 Aligned_cols=22 Identities=32% Similarity=0.347 Sum_probs=20.3
Q ss_pred hhhhhhcCCCCCCCCHHHHHHH
Q psy10340 38 AFFAMHDLDGNHVWDEEEVKML 59 (98)
Q Consensus 38 tFF~lHD~n~DG~~d~~El~ai 59 (98)
.+|...|.|+||.++.+|+.++
T Consensus 3 ~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 3 DAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHcCCCCCcCCHHHHHHH
Confidence 5899999999999999999885
No 6
>KOG4065|consensus
Probab=96.69 E-value=0.0019 Score=47.60 Aligned_cols=57 Identities=19% Similarity=0.269 Sum_probs=43.5
Q ss_pred hhhhhhcCCCCCCCCHHHHHHHHHHHhhhhhCCCCCcchHHHHHHHHHHHHHHHhhhcc
Q psy10340 38 AFFAMHDLDGNHVWDEEEVKMLFLKELDKMYKEGMPQNDLMERAEERQTVFTGLFCSLR 96 (98)
Q Consensus 38 tFF~lHD~n~DG~~d~~El~ai~~kEl~K~y~~~~~edd~~e~~eE~~rMRehv~~e~~ 96 (98)
-+|.|||+|++|.||.-||...++. .++-.+.+- +--+.--+-|+.||-..|++..|
T Consensus 71 HYF~MHDldknn~lDGiEl~kAiTH-~H~~h~~gh-ep~Pl~sE~Ele~~iD~vL~DdD 127 (144)
T KOG4065|consen 71 HYFSMHDLDKNNFLDGIELLKAITH-THDAHDSGH-EPVPLSSEAELERLIDAVLDDDD 127 (144)
T ss_pred hhhhhhccCcCCcchHHHHHHHHHH-HhhhhhcCC-CCCCCCCHHHHHHHHHHHhcccc
Confidence 7899999999999999998877773 555443333 23455667899999999988765
No 7
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=95.57 E-value=0.03 Score=37.10 Aligned_cols=42 Identities=21% Similarity=0.252 Sum_probs=33.6
Q ss_pred hhhhhhc-CCCCC-CCCHHHHHHHHHHHhhhhhCCCCCcchHHH
Q psy10340 38 AFFAMHD-LDGNH-VWDEEEVKMLFLKELDKMYKEGMPQNDLME 79 (98)
Q Consensus 38 tFF~lHD-~n~DG-~~d~~El~ai~~kEl~K~y~~~~~edd~~e 79 (98)
.-|...| .|||| +++..||..++..|+..+-....+++++.+
T Consensus 12 ~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~ 55 (88)
T cd05027 12 DVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDK 55 (88)
T ss_pred HHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHH
Confidence 4688997 89999 599999999999999888766655544433
No 8
>KOG0027|consensus
Probab=94.84 E-value=0.049 Score=38.21 Aligned_cols=32 Identities=25% Similarity=0.334 Sum_probs=26.8
Q ss_pred hhhhhhhcCCCCCCCCHHHHHHHHHHHhhhhh
Q psy10340 37 KAFFAMHDLDGNHVWDEEEVKMLFLKELDKMY 68 (98)
Q Consensus 37 ~tFF~lHD~n~DG~~d~~El~ai~~kEl~K~y 68 (98)
+--|.+.|.|+||+++..||..++..--+|.-
T Consensus 88 ~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~ 119 (151)
T KOG0027|consen 88 KEAFRVFDKDGDGFISASELKKVLTSLGEKLT 119 (151)
T ss_pred HHHHHHHccCCCCcCcHHHHHHHHHHhCCcCC
Confidence 46789999999999999999999997555443
No 9
>KOG0034|consensus
Probab=94.66 E-value=0.089 Score=39.85 Aligned_cols=50 Identities=24% Similarity=0.306 Sum_probs=37.9
Q ss_pred hhhhhcCCCCCCCCHHHHHHHHHHHhhhhhCCCCCcchHHHHHHHHHHHHHHHhhhccc
Q psy10340 39 FFAMHDLDGNHVWDEEEVKMLFLKELDKMYKEGMPQNDLMERAEERQTVFTGLFCSLRA 97 (98)
Q Consensus 39 FF~lHD~n~DG~~d~~El~ai~~kEl~K~y~~~~~edd~~e~~eE~~rMRehv~~e~~~ 97 (98)
-|.+.|+|++|+++.+||..+.. ++...+... ..+-+..|-+.+|.|.|.
T Consensus 109 aF~vYD~~~~G~I~reel~~iv~----~~~~~~~~~-----~~e~~~~i~d~t~~e~D~ 158 (187)
T KOG0034|consen 109 AFRVYDLDGDGFISREELKQILR----MMVGENDDM-----SDEQLEDIVDKTFEEADT 158 (187)
T ss_pred HHHHhcCCCCCcCcHHHHHHHHH----HHHccCCcc-----hHHHHHHHHHHHHHHhCC
Confidence 46799999999999999988866 444433322 567788888888888763
No 10
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=94.51 E-value=0.091 Score=34.74 Aligned_cols=29 Identities=24% Similarity=0.381 Sum_probs=24.2
Q ss_pred hhhhhhc-CCCCC-CCCHHHHHHHHHHHhhh
Q psy10340 38 AFFAMHD-LDGNH-VWDEEEVKMLFLKELDK 66 (98)
Q Consensus 38 tFF~lHD-~n~DG-~~d~~El~ai~~kEl~K 66 (98)
.-|...| .|||| .++..||.+++.+++-.
T Consensus 14 ~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~ 44 (93)
T cd05026 14 RIFHNYSGKEGDRYKLSKGELKELLQRELTD 44 (93)
T ss_pred HHHHHHHccCCCCCEECHHHHHHHHHHHhHH
Confidence 4588887 89999 59999999999887643
No 11
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=94.46 E-value=0.11 Score=33.70 Aligned_cols=30 Identities=27% Similarity=0.440 Sum_probs=24.9
Q ss_pred hhhhhhhc-CCCCCC-CCHHHHHHHHHHHhhh
Q psy10340 37 KAFFAMHD-LDGNHV-WDEEEVKMLFLKELDK 66 (98)
Q Consensus 37 ~tFF~lHD-~n~DG~-~d~~El~ai~~kEl~K 66 (98)
+.-|.+.| .|++|+ |+..||..++..++-.
T Consensus 12 ~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~ 43 (92)
T cd05025 12 INVFHAHSGKEGDKYKLSKKELKDLLQTELSD 43 (92)
T ss_pred HHHHHHHhcccCCCCeECHHHHHHHHHHHHHH
Confidence 35689996 999995 9999999999876643
No 12
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=93.87 E-value=0.083 Score=31.12 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=22.8
Q ss_pred hhhhhhhcCCCCCCCCHHHHHHHHHH
Q psy10340 37 KAFFAMHDLDGNHVWDEEEVKMLFLK 62 (98)
Q Consensus 37 ~tFF~lHD~n~DG~~d~~El~ai~~k 62 (98)
+..|...|.|++|.++.+|+..++.+
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~ 27 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGK 27 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 35788999999999999999999863
No 13
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=93.82 E-value=0.074 Score=30.98 Aligned_cols=44 Identities=11% Similarity=0.253 Sum_probs=32.3
Q ss_pred ChHHHHHHHHhhcCCCCCCCCc---hhhhhhhcCCCCCCCCHHHHHHHHH
Q psy10340 15 SKKQLEEVWQEQDHMGNTEFNP---KAFFAMHDLDGNHVWDEEEVKMLFL 61 (98)
Q Consensus 15 Sk~ql~evWeeed~i~~~~FDp---~tFF~lHD~n~DG~~d~~El~ai~~ 61 (98)
|+++|+..+. .=++. .+++ ...|...|.|+||+++-+|+.+++.
T Consensus 6 ~~~~~~~~l~-~~g~~--~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 6 TREEFRRALS-KLGIK--DLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp EHHHHHHHHH-HTTSS--SSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred CHHHHHHHHH-HhCCC--CCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 5667777764 22333 1334 4899999999999999999988876
No 14
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=93.82 E-value=0.096 Score=24.80 Aligned_cols=25 Identities=40% Similarity=0.446 Sum_probs=22.1
Q ss_pred hhhhhhhcCCCCCCCCHHHHHHHHH
Q psy10340 37 KAFFAMHDLDGNHVWDEEEVKMLFL 61 (98)
Q Consensus 37 ~tFF~lHD~n~DG~~d~~El~ai~~ 61 (98)
+..|...|.|++|.++..|+..++.
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 4578999999999999999998875
No 15
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=93.72 E-value=0.18 Score=32.09 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=23.1
Q ss_pred hhhhhhcC--CCCCCCCHHHHHHHHHHHh
Q psy10340 38 AFFAMHDL--DGNHVWDEEEVKMLFLKEL 64 (98)
Q Consensus 38 tFF~lHD~--n~DG~~d~~El~ai~~kEl 64 (98)
.-|.+.|. |++|.++.+||..++..++
T Consensus 12 ~~F~~~D~~~~~~G~Is~~el~~~l~~~~ 40 (88)
T cd00213 12 DVFHKYSGKEGDKDTLSKKELKELLETEL 40 (88)
T ss_pred HHHHHHhhccCCCCcCcHHHHHHHHHHHh
Confidence 45899999 8999999999999986533
No 16
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=93.62 E-value=0.0072 Score=42.58 Aligned_cols=22 Identities=23% Similarity=0.669 Sum_probs=16.0
Q ss_pred CCCChHHHHHHHHhhcCCCCCCCCc
Q psy10340 12 HPGSKKQLEEVWQEQDHMGNTEFNP 36 (98)
Q Consensus 12 hPGSk~ql~evWeeed~i~~~~FDp 36 (98)
..+||+||+++|+ +|+|++||+
T Consensus 79 ~~I~k~eL~efW~---qisD~sFDs 100 (100)
T PF08414_consen 79 DSITKDELKEFWE---QISDQSFDS 100 (100)
T ss_dssp SEE-HHHHHHHHH---HHH---HHH
T ss_pred CCcCHHHHHHHHH---HhhccCCCC
Confidence 5679999999999 999999985
No 17
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=92.95 E-value=0.13 Score=36.04 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=14.3
Q ss_pred hhhhhhcCCCCCCCCHHHHHHHHH
Q psy10340 38 AFFAMHDLDGNHVWDEEEVKMLFL 61 (98)
Q Consensus 38 tFF~lHD~n~DG~~d~~El~ai~~ 61 (98)
.||..+|.|+||+||-+|....|.
T Consensus 84 ~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 84 PFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHCCCCCCCCCHHHHHHHHh
Confidence 466666666666666666555554
No 18
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=92.44 E-value=0.11 Score=32.56 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=23.0
Q ss_pred chhhhhhhcCCCCCCCCHHHHHHHHH
Q psy10340 36 PKAFFAMHDLDGNHVWDEEEVKMLFL 61 (98)
Q Consensus 36 p~tFF~lHD~n~DG~~d~~El~ai~~ 61 (98)
+...|..+|.+++|+|+.+||+..|.
T Consensus 23 A~~LFq~~D~s~~g~Le~~Ef~~Fy~ 48 (51)
T PF14788_consen 23 ARQLFQECDKSQSGRLEGEEFEEFYK 48 (51)
T ss_dssp HHHHHHHH-SSSSSEBEHHHHHHHHH
T ss_pred HHHHHHHhcccCCCCccHHHHHHHHH
Confidence 66899999999999999999999875
No 19
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=92.25 E-value=0.13 Score=36.06 Aligned_cols=22 Identities=14% Similarity=0.090 Sum_probs=19.3
Q ss_pred hhhhhcCCCCCCCCHHHHHHHH
Q psy10340 39 FFAMHDLDGNHVWDEEEVKMLF 60 (98)
Q Consensus 39 FF~lHD~n~DG~~d~~El~ai~ 60 (98)
-|...|.|+||+|+.+||..+.
T Consensus 53 ~F~~lD~d~DG~Ls~~EL~~~~ 74 (116)
T cd00252 53 MFNQLDGNYDGKLSHHELAPIR 74 (116)
T ss_pred HHHHHCCCCCCcCCHHHHHHHH
Confidence 3677799999999999999875
No 20
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=92.03 E-value=0.37 Score=31.43 Aligned_cols=27 Identities=33% Similarity=0.368 Sum_probs=22.1
Q ss_pred hhhhhhcC-CC-CCCCCHHHHHHHHHHHh
Q psy10340 38 AFFAMHDL-DG-NHVWDEEEVKMLFLKEL 64 (98)
Q Consensus 38 tFF~lHD~-n~-DG~~d~~El~ai~~kEl 64 (98)
.-|.+.|. |+ +|+++..||..++..++
T Consensus 12 ~~F~~~D~~dg~dG~Is~~El~~~l~~~~ 40 (94)
T cd05031 12 LTFHRYAGKDGDKNTLSRKELKKLMEKEL 40 (94)
T ss_pred HHHHHHhccCCCCCeECHHHHHHHHHHHh
Confidence 46888886 97 69999999999987533
No 21
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=91.75 E-value=0.26 Score=32.13 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=20.3
Q ss_pred hhhhhhcCCCCCCCCHHHHHHHHHH
Q psy10340 38 AFFAMHDLDGNHVWDEEEVKMLFLK 62 (98)
Q Consensus 38 tFF~lHD~n~DG~~d~~El~ai~~k 62 (98)
..|...|.|++|.++..||..++.+
T Consensus 14 ~~F~~~D~d~~G~Is~~el~~~l~~ 38 (96)
T smart00027 14 QIFRSLDKNQDGTVTGAQAKPILLK 38 (96)
T ss_pred HHHHHhCCCCCCeEeHHHHHHHHHH
Confidence 5688888888888888888888753
No 22
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=91.52 E-value=0.2 Score=33.53 Aligned_cols=29 Identities=17% Similarity=0.271 Sum_probs=26.0
Q ss_pred hhhhhhhcC-CCCCCCCHHHHHHHHHHHhh
Q psy10340 37 KAFFAMHDL-DGNHVWDEEEVKMLFLKELD 65 (98)
Q Consensus 37 ~tFF~lHD~-n~DG~~d~~El~ai~~kEl~ 65 (98)
+.-|...|. +++|+++..||+.++.+||-
T Consensus 11 ~~~F~~fd~~~~~g~i~~~ELk~ll~~elg 40 (89)
T cd05022 11 VSNFHKASVKGGKESLTASEFQELLTQQLP 40 (89)
T ss_pred HHHHHHHhCCCCCCeECHHHHHHHHHHHhh
Confidence 356889999 99999999999999998874
No 23
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=91.39 E-value=0.18 Score=30.12 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=20.6
Q ss_pred hhhhhhcCCCCCCCCHHHHHHHH
Q psy10340 38 AFFAMHDLDGNHVWDEEEVKMLF 60 (98)
Q Consensus 38 tFF~lHD~n~DG~~d~~El~ai~ 60 (98)
..|...|.|+||.++-+|+.++|
T Consensus 44 ~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 44 QIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHhCCCCcCCCcHHHHhccC
Confidence 45999999999999999998875
No 24
>KOG0044|consensus
Probab=90.65 E-value=0.53 Score=36.04 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=23.4
Q ss_pred hhhhcCCCCCCCCHHHHHHHHHHHhhhhh
Q psy10340 40 FAMHDLDGNHVWDEEEVKMLFLKELDKMY 68 (98)
Q Consensus 40 F~lHD~n~DG~~d~~El~ai~~kEl~K~y 68 (98)
|.|.|+|+||+++.+|+..|+..=+..+.
T Consensus 106 F~lyD~dgdG~It~~Eml~iv~~i~~m~~ 134 (193)
T KOG0044|consen 106 FRLYDLDGDGYITKEEMLKIVQAIYQMTG 134 (193)
T ss_pred heeecCCCCceEcHHHHHHHHHHHHHHcc
Confidence 99999999999999998888774334444
No 25
>KOG0039|consensus
Probab=89.20 E-value=0.44 Score=41.80 Aligned_cols=60 Identities=22% Similarity=0.349 Sum_probs=44.4
Q ss_pred CCCCCCCch--hhhhhhcCCCCCCCCHHHHHHHHHHHhhhhhCCCCCcchHHHHHHHHHHHHHHHhhhccc
Q psy10340 29 MGNTEFNPK--AFFAMHDLDGNHVWDEEEVKMLFLKELDKMYKEGMPQNDLMERAEERQTVFTGLFCSLRA 97 (98)
Q Consensus 29 i~~~~FDp~--tFF~lHD~n~DG~~d~~El~ai~~kEl~K~y~~~~~edd~~e~~eE~~rMRehv~~e~~~ 97 (98)
+.+.+|||+ |||+|.|. ++|.++++|+..+...-+. .+. ....++.....+.++|.++|+
T Consensus 11 ~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~----~~~----~~~~~~~~~~~~~~~~~~~~~ 72 (646)
T KOG0039|consen 11 ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSIS----ANW----LSLIKKQTEEYAALIMEELDP 72 (646)
T ss_pred ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHH----hhh----hhhhhhhhhHHHHHhhhhccc
Confidence 888999999 99999999 9999999999888874222 111 223445556677777777764
No 26
>KOG0031|consensus
Probab=89.05 E-value=0.57 Score=35.83 Aligned_cols=28 Identities=21% Similarity=0.437 Sum_probs=24.6
Q ss_pred hhhhhcCCCCCCCCHHHHHHHHHHHhhhh
Q psy10340 39 FFAMHDLDGNHVWDEEEVKMLFLKELDKM 67 (98)
Q Consensus 39 FF~lHD~n~DG~~d~~El~ai~~kEl~K~ 67 (98)
-|.|.|.|+||+++.++|+..|. -|-|+
T Consensus 37 AF~~mDqnrDG~IdkeDL~d~~a-SlGk~ 64 (171)
T KOG0031|consen 37 AFNLMDQNRDGFIDKEDLRDMLA-SLGKI 64 (171)
T ss_pred HHHHHhccCCCcccHHHHHHHHH-HcCCC
Confidence 58999999999999999999998 36555
No 27
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=87.97 E-value=0.77 Score=25.00 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=21.4
Q ss_pred hhhhhhcCCCCCCCCHHHHHHHHH
Q psy10340 38 AFFAMHDLDGNHVWDEEEVKMLFL 61 (98)
Q Consensus 38 tFF~lHD~n~DG~~d~~El~ai~~ 61 (98)
..|...|.|++|.++..|+..++.
T Consensus 4 ~~f~~~d~~~~g~l~~~e~~~~l~ 27 (63)
T cd00051 4 EAFRLFDKDGDGTISADELKAALK 27 (63)
T ss_pred HHHHHhCCCCCCcCcHHHHHHHHH
Confidence 468899999999999999988876
No 28
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=87.82 E-value=1.3 Score=29.27 Aligned_cols=27 Identities=33% Similarity=0.450 Sum_probs=22.4
Q ss_pred hhhhhhcC-CC-CCCCCHHHHHHHHHHHh
Q psy10340 38 AFFAMHDL-DG-NHVWDEEEVKMLFLKEL 64 (98)
Q Consensus 38 tFF~lHD~-n~-DG~~d~~El~ai~~kEl 64 (98)
.-|...|. || +|+++.+||..++.+++
T Consensus 14 ~~F~~y~~~~~~~g~Is~~EL~~~l~~~~ 42 (88)
T cd05029 14 AIFHKYSGREGDKNTLSKKELKELIQKEL 42 (88)
T ss_pred HHHHHHHccCCCCCEECHHHHHHHHHHHH
Confidence 45777887 78 99999999999998653
No 29
>KOG0027|consensus
Probab=84.89 E-value=1 Score=31.50 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=20.9
Q ss_pred hhhhhhhcCCCCCCCCHHHHHHHHH
Q psy10340 37 KAFFAMHDLDGNHVWDEEEVKMLFL 61 (98)
Q Consensus 37 ~tFF~lHD~n~DG~~d~~El~ai~~ 61 (98)
+..|.+.|.|++|+++..||.+++.
T Consensus 11 ~~~F~~fD~d~~G~i~~~el~~~lr 35 (151)
T KOG0027|consen 11 KEAFQLFDKDGDGKISVEELGAVLR 35 (151)
T ss_pred HHHHHHHCCCCCCcccHHHHHHHHH
Confidence 4578888999999999999888875
No 30
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=84.62 E-value=2.2 Score=28.26 Aligned_cols=32 Identities=25% Similarity=0.304 Sum_probs=25.6
Q ss_pred hhhhh-hcCCCCC-CCCHHHHHHHHHHHhhhhhC
Q psy10340 38 AFFAM-HDLDGNH-VWDEEEVKMLFLKELDKMYK 69 (98)
Q Consensus 38 tFF~l-HD~n~DG-~~d~~El~ai~~kEl~K~y~ 69 (98)
..|.- -|.+|+| +|+.+|++.++.+|+-.+-.
T Consensus 13 ~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~ 46 (89)
T cd05023 13 AVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTK 46 (89)
T ss_pred HHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhc
Confidence 45665 6899987 99999999999999765443
No 31
>PTZ00184 calmodulin; Provisional
Probab=82.49 E-value=1.2 Score=29.24 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=22.1
Q ss_pred hhhhhhhcCCCCCCCCHHHHHHHHH
Q psy10340 37 KAFFAMHDLDGNHVWDEEEVKMLFL 61 (98)
Q Consensus 37 ~tFF~lHD~n~DG~~d~~El~ai~~ 61 (98)
+..|...|.|++|+++..|+..++.
T Consensus 87 ~~~F~~~D~~~~g~i~~~e~~~~l~ 111 (149)
T PTZ00184 87 KEAFKVFDRDGNGFISAAELRHVMT 111 (149)
T ss_pred HHHHHhhCCCCCCeEeHHHHHHHHH
Confidence 4688999999999999999988775
No 32
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=81.86 E-value=1.2 Score=30.65 Aligned_cols=19 Identities=26% Similarity=0.443 Sum_probs=15.4
Q ss_pred hhhhhhcCCCCCCCCHHHH
Q psy10340 38 AFFAMHDLDGNHVWDEEEV 56 (98)
Q Consensus 38 tFF~lHD~n~DG~~d~~El 56 (98)
..+.|.|.|.||+||.+|+
T Consensus 47 ~IW~LaD~~~dG~L~~~EF 65 (104)
T PF12763_consen 47 QIWNLADIDNDGKLDFEEF 65 (104)
T ss_dssp HHHHHH-SSSSSEEEHHHH
T ss_pred HHHhhhcCCCCCcCCHHHH
Confidence 4556999999999999994
No 33
>PTZ00183 centrin; Provisional
Probab=81.02 E-value=1.8 Score=29.02 Aligned_cols=24 Identities=29% Similarity=0.463 Sum_probs=19.4
Q ss_pred hhhhhhcCCCCCCCCHHHHHHHHH
Q psy10340 38 AFFAMHDLDGNHVWDEEEVKMLFL 61 (98)
Q Consensus 38 tFF~lHD~n~DG~~d~~El~ai~~ 61 (98)
..|.++|.|++|.++..|+..++.
T Consensus 21 ~~F~~~D~~~~G~i~~~e~~~~l~ 44 (158)
T PTZ00183 21 EAFDLFDTDGSGTIDPKELKVAMR 44 (158)
T ss_pred HHHHHhCCCCCCcccHHHHHHHHH
Confidence 457888889999999999877665
No 34
>PTZ00184 calmodulin; Provisional
Probab=80.68 E-value=2.1 Score=28.12 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=19.8
Q ss_pred hhhhhhcCCCCCCCCHHHHHHHHH
Q psy10340 38 AFFAMHDLDGNHVWDEEEVKMLFL 61 (98)
Q Consensus 38 tFF~lHD~n~DG~~d~~El~ai~~ 61 (98)
.+|...|.|++|.++..|+..++.
T Consensus 15 ~~F~~~D~~~~G~i~~~e~~~~l~ 38 (149)
T PTZ00184 15 EAFSLFDKDGDGTITTKELGTVMR 38 (149)
T ss_pred HHHHHHcCCCCCcCCHHHHHHHHH
Confidence 678888999999999999887653
No 35
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=80.25 E-value=3.3 Score=30.98 Aligned_cols=39 Identities=18% Similarity=0.324 Sum_probs=29.7
Q ss_pred CccCCCCChHHHHHHHHhhcCCCCCCCCchhhhhhhcCCCCCCCCHHHHHHHH
Q psy10340 8 FQVHHPGSKKQLEEVWQEQDHMGNTEFNPKAFFAMHDLDGNHVWDEEEVKMLF 60 (98)
Q Consensus 8 ~ki~hPGSk~ql~evWeeed~i~~~~FDp~tFF~lHD~n~DG~~d~~El~ai~ 60 (98)
.+..++-++.|+++.- -=|.|-|.|+||.++..||..++
T Consensus 8 ~~~~~~~t~~qi~~lk--------------eaF~l~D~d~~G~I~~~el~~il 46 (160)
T COG5126 8 LLTFTQLTEEQIQELK--------------EAFQLFDRDSDGLIDRNELGKIL 46 (160)
T ss_pred hhhcccCCHHHHHHHH--------------HHHHHhCcCCCCCCcHHHHHHHH
Confidence 3455566666665443 35889999999999999999997
No 36
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=79.85 E-value=3.2 Score=26.95 Aligned_cols=45 Identities=13% Similarity=0.223 Sum_probs=34.2
Q ss_pred ChHHHHHHHHhhcCCCCCCCCchhhhhhhcCCCCCCCCHHHHHHHHHH
Q psy10340 15 SKKQLEEVWQEQDHMGNTEFNPKAFFAMHDLDGNHVWDEEEVKMLFLK 62 (98)
Q Consensus 15 Sk~ql~evWeeed~i~~~~FDp~tFF~lHD~n~DG~~d~~El~ai~~k 62 (98)
|..+++.++.. .+++.+ ....+|.+.|.|++|.++-+|+.+++..
T Consensus 28 s~~el~~~l~~-~~~~~~--ev~~i~~~~d~~~~g~I~~~eF~~~~~~ 72 (96)
T smart00027 28 TGAQAKPILLK-SGLPQT--LLAKIWNLADIDNDGELDKDEFALAMHL 72 (96)
T ss_pred eHHHHHHHHHH-cCCCHH--HHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence 67788888875 234321 2348999999999999999999988874
No 37
>PTZ00183 centrin; Provisional
Probab=79.79 E-value=2.2 Score=28.60 Aligned_cols=24 Identities=17% Similarity=0.097 Sum_probs=21.5
Q ss_pred hhhhhhcCCCCCCCCHHHHHHHHH
Q psy10340 38 AFFAMHDLDGNHVWDEEEVKMLFL 61 (98)
Q Consensus 38 tFF~lHD~n~DG~~d~~El~ai~~ 61 (98)
.-|.+.|.|++|+++..|+.+++.
T Consensus 94 ~~F~~~D~~~~G~i~~~e~~~~l~ 117 (158)
T PTZ00183 94 KAFRLFDDDKTGKISLKNLKRVAK 117 (158)
T ss_pred HHHHHhCCCCCCcCcHHHHHHHHH
Confidence 568999999999999999998876
No 38
>KOG4223|consensus
Probab=79.70 E-value=1.1 Score=37.20 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=21.4
Q ss_pred hhhhhhcCCCCCCCCHHHHHHHHH
Q psy10340 38 AFFAMHDLDGNHVWDEEEVKMLFL 61 (98)
Q Consensus 38 tFF~lHD~n~DG~~d~~El~ai~~ 61 (98)
.||.-+|+|+||+|+.+||+.-+.
T Consensus 245 ~F~~~~DknkDG~L~~dEl~~WI~ 268 (325)
T KOG4223|consen 245 QFFEFRDKNKDGKLDGDELLDWIL 268 (325)
T ss_pred HHHHHhhcCCCCccCHHHHhcccC
Confidence 899999999999999999985544
No 39
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=78.91 E-value=1.1 Score=30.96 Aligned_cols=21 Identities=19% Similarity=0.275 Sum_probs=16.5
Q ss_pred hhhhhhhcCCCCCCCCHHHHH
Q psy10340 37 KAFFAMHDLDGNHVWDEEEVK 57 (98)
Q Consensus 37 ~tFF~lHD~n~DG~~d~~El~ 57 (98)
+.||.-+|.|+||.|+-.|--
T Consensus 91 ~~F~~~CD~n~d~~Is~~EW~ 111 (113)
T PF10591_consen 91 RPFFRSCDVNKDGKISLDEWC 111 (113)
T ss_dssp HHHHHHH-TT-SSSEEHHHHH
T ss_pred HHHHHHcCCCCCCCCCHHHHc
Confidence 489999999999999998853
No 40
>KOG2562|consensus
Probab=78.56 E-value=3.7 Score=35.90 Aligned_cols=38 Identities=24% Similarity=0.456 Sum_probs=32.2
Q ss_pred hhhhhhhcCCCCCCCCHHHHHHHHHHHhhhhhCCCCCc
Q psy10340 37 KAFFAMHDLDGNHVWDEEEVKMLFLKELDKMYKEGMPQ 74 (98)
Q Consensus 37 ~tFF~lHD~n~DG~~d~~El~ai~~kEl~K~y~~~~~e 74 (98)
.-.|..-|++|||+|+..||.-+|..-++++-.-+.+.
T Consensus 354 eYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~ 391 (493)
T KOG2562|consen 354 EYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEA 391 (493)
T ss_pred hhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCc
Confidence 36899999999999999999999998788877655543
No 41
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=75.43 E-value=3.4 Score=21.50 Aligned_cols=16 Identities=19% Similarity=0.464 Sum_probs=12.3
Q ss_pred cCCCCCCCCHHHHHHH
Q psy10340 44 DLDGNHVWDEEEVKML 59 (98)
Q Consensus 44 D~n~DG~~d~~El~ai 59 (98)
|.|+||.++.-++.-+
T Consensus 1 DvN~DG~vna~D~~~l 16 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALL 16 (21)
T ss_dssp -TTSSSSSSHHHHHHH
T ss_pred CCCCCCcCCHHHHHHH
Confidence 7899999999886543
No 42
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=74.03 E-value=5.5 Score=29.80 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=21.5
Q ss_pred hhhhhhcCCCCCCCCHHHHHHHHH
Q psy10340 38 AFFAMHDLDGNHVWDEEEVKMLFL 61 (98)
Q Consensus 38 tFF~lHD~n~DG~~d~~El~ai~~ 61 (98)
--|.+.|.|+||+++..|+..+..
T Consensus 96 ~aF~~fD~d~dG~Is~~eL~~vl~ 119 (160)
T COG5126 96 EAFKLFDKDHDGYISIGELRRVLK 119 (160)
T ss_pred HHHHHhCCCCCceecHHHHHHHHH
Confidence 458899999999999999988876
No 43
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=73.80 E-value=7 Score=25.31 Aligned_cols=49 Identities=14% Similarity=0.090 Sum_probs=33.3
Q ss_pred CChHHHHHHHHhhc----CCCCCCCCchhhhhhhcCCCCCCCCHHHHHHHHHH
Q psy10340 14 GSKKQLEEVWQEQD----HMGNTEFNPKAFFAMHDLDGNHVWDEEEVKMLFLK 62 (98)
Q Consensus 14 GSk~ql~evWeeed----~i~~~~FDp~tFF~lHD~n~DG~~d~~El~ai~~k 62 (98)
.|.++|+.++...- +.....=.-...|...|.|++|.++-+|+.+++..
T Consensus 27 Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~ 79 (94)
T cd05031 27 LSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAG 79 (94)
T ss_pred ECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 47788888876311 11111112347888889999999999999887763
No 44
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=72.97 E-value=5 Score=26.36 Aligned_cols=49 Identities=20% Similarity=0.212 Sum_probs=33.5
Q ss_pred CChHHHHHHHHhh--cCCCCCC--CCchhhhhhhcCCCCCCCCHHHHHHHHHH
Q psy10340 14 GSKKQLEEVWQEQ--DHMGNTE--FNPKAFFAMHDLDGNHVWDEEEVKMLFLK 62 (98)
Q Consensus 14 GSk~ql~evWeee--d~i~~~~--FDp~tFF~lHD~n~DG~~d~~El~ai~~k 62 (98)
.|+++|+.+=..+ .-++.+. -.-...+.-.|.|+||.++.+|+.+++.+
T Consensus 29 Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~ 81 (93)
T cd05026 29 LSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAA 81 (93)
T ss_pred ECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence 4889998884321 1122111 12337788889999999999999888864
No 45
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=70.43 E-value=13 Score=25.41 Aligned_cols=48 Identities=10% Similarity=0.054 Sum_probs=32.8
Q ss_pred CChHHHHHHHHhhc-C-CCCCCCCch---hhhhhhcCCCCCCCCHHHHHHHHHH
Q psy10340 14 GSKKQLEEVWQEQD-H-MGNTEFNPK---AFFAMHDLDGNHVWDEEEVKMLFLK 62 (98)
Q Consensus 14 GSk~ql~evWeeed-~-i~~~~FDp~---tFF~lHD~n~DG~~d~~El~ai~~k 62 (98)
-||.+|++.=..+- . +.. .=||. ..|..-|.|+||.++-+|.-.++.+
T Consensus 24 Lsk~Elk~Ll~~Elp~~l~~-~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~ 76 (91)
T cd05024 24 LNRDDLQKLMEKEFSEFLKN-QNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAG 76 (91)
T ss_pred CCHHHHHHHHHHHhHHHHcC-CCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 46777776643221 1 222 22666 6788889999999999998888763
No 46
>KOG0028|consensus
Probab=69.37 E-value=7.7 Score=29.79 Aligned_cols=45 Identities=31% Similarity=0.407 Sum_probs=34.6
Q ss_pred hhhhhhhcCCCCCCCCHHHHHHHHHHHhhhhhCCCCCcchHHHHHHHHHH
Q psy10340 37 KAFFAMHDLDGNHVWDEEEVKMLFLKELDKMYKEGMPQNDLMERAEERQT 86 (98)
Q Consensus 37 ~tFF~lHD~n~DG~~d~~El~ai~~kEl~K~y~~~~~edd~~e~~eE~~r 86 (98)
+.-|.+-|.+.+|.|+..+|..+- +||- ++-++.+.++|-+|.-|
T Consensus 109 ~~afrl~D~D~~Gkis~~~lkrva-keLg----enltD~El~eMIeEAd~ 153 (172)
T KOG0028|consen 109 KKAFRLFDDDKTGKISQRNLKRVA-KELG----ENLTDEELMEMIEEADR 153 (172)
T ss_pred HHHHHcccccCCCCcCHHHHHHHH-HHhC----ccccHHHHHHHHHHhcc
Confidence 367889999999999999988764 3564 77777788888777543
No 47
>KOG4251|consensus
Probab=69.32 E-value=2.5 Score=35.09 Aligned_cols=34 Identities=29% Similarity=0.353 Sum_probs=25.2
Q ss_pred CCCCCCCCchhhhhhhcCCCCCCCCHHHHHHHHH
Q psy10340 28 HMGNTEFNPKAFFAMHDLDGNHVWDEEEVKMLFL 61 (98)
Q Consensus 28 ~i~~~~FDp~tFF~lHD~n~DG~~d~~El~ai~~ 61 (98)
|+....=+++|||...|.||||.++=+|.+--|.
T Consensus 134 HfqeameeSkthFraVDpdgDGhvsWdEykvkFl 167 (362)
T KOG4251|consen 134 HFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFL 167 (362)
T ss_pred HHHHHHhhhhhheeeeCCCCCCceehhhhhhHHH
Confidence 3333344688999999999999877777665555
No 48
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=68.97 E-value=0.64 Score=32.22 Aligned_cols=23 Identities=30% Similarity=0.270 Sum_probs=16.4
Q ss_pred hhhhhcCCCCCCCCHHHHHHHHH
Q psy10340 39 FFAMHDLDGNHVWDEEEVKMLFL 61 (98)
Q Consensus 39 FF~lHD~n~DG~~d~~El~ai~~ 61 (98)
-|.--|.|+||+|+..||..|..
T Consensus 59 ~F~~LD~n~d~~L~~~El~~l~~ 81 (113)
T PF10591_consen 59 KFCQLDRNKDGVLDRSELKPLRR 81 (113)
T ss_dssp HHHHH--T-SSEE-TTTTGGGGS
T ss_pred hHhhhcCCCCCccCHHHHHHHHH
Confidence 48888999999999999988765
No 49
>KOG2643|consensus
Probab=68.21 E-value=3.1 Score=36.25 Aligned_cols=24 Identities=42% Similarity=0.526 Sum_probs=20.6
Q ss_pred hhhhhhcCCCCCCCCHHHHHHHHH
Q psy10340 38 AFFAMHDLDGNHVWDEEEVKMLFL 61 (98)
Q Consensus 38 tFF~lHD~n~DG~~d~~El~ai~~ 61 (98)
.=|+|.|+||||-+|.+|++.+.+
T Consensus 237 IAFKMFD~dgnG~IdkeEF~~v~~ 260 (489)
T KOG2643|consen 237 IAFKMFDLDGNGEIDKEEFETVQQ 260 (489)
T ss_pred eeeeeeecCCCCcccHHHHHHHHH
Confidence 447899999999999999887763
No 50
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=67.07 E-value=5.7 Score=33.24 Aligned_cols=20 Identities=35% Similarity=0.501 Sum_probs=18.6
Q ss_pred hhhhhhcCCCCCCCCHHHHH
Q psy10340 38 AFFAMHDLDGNHVWDEEEVK 57 (98)
Q Consensus 38 tFF~lHD~n~DG~~d~~El~ 57 (98)
..|.+.|.|+||.++.+|+.
T Consensus 338 ~aF~~~D~dgdG~Is~~E~~ 357 (391)
T PRK12309 338 EIFRLYDLDGDGFITREEWL 357 (391)
T ss_pred HHHHHhCCCCCCcCcHHHHH
Confidence 78999999999999999985
No 51
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=66.29 E-value=8.1 Score=25.51 Aligned_cols=48 Identities=19% Similarity=0.144 Sum_probs=33.0
Q ss_pred CChHHHHHHHHhhc--CCCCCCCCc---hhhhhhhcCCCCCCCCHHHHHHHHHH
Q psy10340 14 GSKKQLEEVWQEQD--HMGNTEFNP---KAFFAMHDLDGNHVWDEEEVKMLFLK 62 (98)
Q Consensus 14 GSk~ql~evWeeed--~i~~~~FDp---~tFF~lHD~n~DG~~d~~El~ai~~k 62 (98)
.|+++|+.+=..+- .+.. .=++ ...|.-.|.|+||.++-+|+-.++.+
T Consensus 28 Ls~~Elk~ll~~e~~~~~~~-~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~ 80 (89)
T cd05023 28 LSKTEFLSFMNTELASFTKN-QKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGG 80 (89)
T ss_pred ECHHHHHHHHHHhhhHhhcC-CCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 58888888865331 1111 1122 36788889999999999999887763
No 52
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=65.64 E-value=15 Score=24.08 Aligned_cols=53 Identities=21% Similarity=0.263 Sum_probs=35.3
Q ss_pred CChHHHHHHHHhhcCCCCCCCCc---hhhhhhhcCCCCCCCCHHHHHHHHHHHhhhhh
Q psy10340 14 GSKKQLEEVWQEQDHMGNTEFNP---KAFFAMHDLDGNHVWDEEEVKMLFLKELDKMY 68 (98)
Q Consensus 14 GSk~ql~evWeeed~i~~~~FDp---~tFF~lHD~n~DG~~d~~El~ai~~kEl~K~y 68 (98)
.|+++|+.+...+-.+. ...++ ...|.--|.|+||.++-+|+..++.+ |-+.|
T Consensus 29 Is~~EL~~~l~~~~~lg-~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~-l~~~~ 84 (88)
T cd05029 29 LSKKELKELIQKELTIG-SKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGA-LALIY 84 (88)
T ss_pred ECHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH-HHHHH
Confidence 47888998885321111 12222 36677779999999999999888773 54444
No 53
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=64.34 E-value=9.3 Score=25.42 Aligned_cols=48 Identities=13% Similarity=0.075 Sum_probs=33.5
Q ss_pred CChHHHHHHHHhh--cCCCCCCCCchhhhhhhcCCCCCCCCHHHHHHHHHH
Q psy10340 14 GSKKQLEEVWQEQ--DHMGNTEFNPKAFFAMHDLDGNHVWDEEEVKMLFLK 62 (98)
Q Consensus 14 GSk~ql~evWeee--d~i~~~~FDp~tFF~lHD~n~DG~~d~~El~ai~~k 62 (98)
.|+++|+.+=..+ .-+++. =+-.-.|.-.|.|+||.++-+|...++.+
T Consensus 26 i~~~ELk~ll~~elg~~ls~~-~~v~~mi~~~D~d~DG~I~F~EF~~l~~~ 75 (89)
T cd05022 26 LTASEFQELLTQQLPHLLKDV-EGLEEKMKNLDVNQDSKLSFEEFWELIGE 75 (89)
T ss_pred ECHHHHHHHHHHHhhhhccCH-HHHHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 3677787775532 124421 12346778889999999999999888875
No 54
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=62.78 E-value=17 Score=24.90 Aligned_cols=27 Identities=15% Similarity=0.313 Sum_probs=22.4
Q ss_pred CCCCCCCHHHHHHHHHHHhhhhhCCCC
Q psy10340 46 DGNHVWDEEEVKMLFLKELDKMYKEGM 72 (98)
Q Consensus 46 n~DG~~d~~El~ai~~kEl~K~y~~~~ 72 (98)
-..|.|+..|++.++.+||-.+-....
T Consensus 19 G~~~tLsk~Elk~Ll~~Elp~~l~~~~ 45 (91)
T cd05024 19 GEKNYLNRDDLQKLMEKEFSEFLKNQN 45 (91)
T ss_pred CCCCcCCHHHHHHHHHHHhHHHHcCCC
Confidence 345699999999999999998776644
No 55
>PLN02964 phosphatidylserine decarboxylase
Probab=61.97 E-value=20 Score=32.13 Aligned_cols=24 Identities=21% Similarity=0.182 Sum_probs=21.1
Q ss_pred hhhhhhcCCCCCCCCHHHHHHHHH
Q psy10340 38 AFFAMHDLDGNHVWDEEEVKMLFL 61 (98)
Q Consensus 38 tFF~lHD~n~DG~~d~~El~ai~~ 61 (98)
..|...|.|+||.++-+|+.+++.
T Consensus 183 ~mf~~~D~DgdG~IdfdEFl~lL~ 206 (644)
T PLN02964 183 RILAIVDYDEDGQLSFSEFSDLIK 206 (644)
T ss_pred HHHHHhCCCCCCeEcHHHHHHHHH
Confidence 567888999999999999988886
No 56
>PLN02964 phosphatidylserine decarboxylase
Probab=61.79 E-value=8.1 Score=34.55 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=24.0
Q ss_pred hhhhhhhcCCCCCCCCHHHHHHHHHH
Q psy10340 37 KAFFAMHDLDGNHVWDEEEVKMLFLK 62 (98)
Q Consensus 37 ~tFF~lHD~n~DG~~d~~El~ai~~k 62 (98)
+.+|...|.|+||+++.+||.+++..
T Consensus 218 ~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 218 EELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 47899999999999999999999886
No 57
>PF10197 Cir_N: N-terminal domain of CBF1 interacting co-repressor CIR; InterPro: IPR019339 This entry represents a 45 residue conserved region at the N-terminal end of a family of proteins referred to as CIRs (CBF1-interacting co-repressors). CBF1 (centromere-binding factor 1) acts as a transcription factor that causes repression by binding specifically to GTGGGAA motifs in responsive promoters, and it requires CIR as a co-repressor. CIR binds to histone deacetylase and to SAP30 and serves as a linker between CBF1 and the histone deacetylase complex []. It may also modulate splice site selection during alternative splicing of pre-mRNAs.
Probab=61.63 E-value=6.5 Score=22.77 Aligned_cols=14 Identities=57% Similarity=1.182 Sum_probs=13.0
Q ss_pred CCCCChHHHHHHHH
Q psy10340 11 HHPGSKKQLEEVWQ 24 (98)
Q Consensus 11 ~hPGSk~ql~evWe 24 (98)
.|||+..-.+.||.
T Consensus 2 wHP~~~~Nq~kVw~ 15 (37)
T PF10197_consen 2 WHPGNKKNQEKVWK 15 (37)
T ss_pred CCCCcchHHHHHHH
Confidence 59999999999998
No 58
>KOG1029|consensus
Probab=60.47 E-value=7 Score=36.71 Aligned_cols=29 Identities=24% Similarity=0.509 Sum_probs=23.7
Q ss_pred hhhhhhcCCCCCCCCHHH-HHHHHHHHhhh
Q psy10340 38 AFFAMHDLDGNHVWDEEE-VKMLFLKELDK 66 (98)
Q Consensus 38 tFF~lHD~n~DG~~d~~E-l~ai~~kEl~K 66 (98)
+-..|.|.|+||.|+.+| |.|+|.-|.-|
T Consensus 233 ~IW~LsDvd~DGkL~~dEfilam~liema~ 262 (1118)
T KOG1029|consen 233 HIWTLSDVDGDGKLSADEFILAMHLIEMAK 262 (1118)
T ss_pred hheeeeccCCCCcccHHHHHHHHHHHHHHh
Confidence 455689999999999999 88998866443
No 59
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=59.85 E-value=13 Score=24.18 Aligned_cols=53 Identities=17% Similarity=0.159 Sum_probs=34.2
Q ss_pred CChHHHHHHHHhhc--CCCCCCCC---chhhhhhhcCCCCCCCCHHHHHHHHHHHhhhhh
Q psy10340 14 GSKKQLEEVWQEQD--HMGNTEFN---PKAFFAMHDLDGNHVWDEEEVKMLFLKELDKMY 68 (98)
Q Consensus 14 GSk~ql~evWeeed--~i~~~~FD---p~tFF~lHD~n~DG~~d~~El~ai~~kEl~K~y 68 (98)
.|++.|+.+=...- .++ ...+ -...|...|.|+||.++-+|+..++. .+-+.|
T Consensus 27 Is~~El~~ll~~~~g~~~t-~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~-~~~~~~ 84 (88)
T cd05030 27 LYKKEFKQLVEKELPNFLK-KEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVI-KVGVAA 84 (88)
T ss_pred CCHHHHHHHHHHHhhHhhc-cCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHH-HHHHHh
Confidence 56777777754211 111 1111 23688888999999999999998877 344444
No 60
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=58.63 E-value=14 Score=23.64 Aligned_cols=49 Identities=22% Similarity=0.209 Sum_probs=33.7
Q ss_pred CChHHHHHHHHh-h-cCC--CCCCCCchhhhhhhcCCCCCCCCHHHHHHHHHH
Q psy10340 14 GSKKQLEEVWQE-Q-DHM--GNTEFNPKAFFAMHDLDGNHVWDEEEVKMLFLK 62 (98)
Q Consensus 14 GSk~ql~evWee-e-d~i--~~~~FDp~tFF~lHD~n~DG~~d~~El~ai~~k 62 (98)
.|+.+|+.+... . .-+ .+..=.....|...|.|++|.++-+|+..++.+
T Consensus 28 Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~ 80 (92)
T cd05025 28 LSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAA 80 (92)
T ss_pred ECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 567888888642 1 101 111223448899999999999999999888763
No 61
>KOG0031|consensus
Probab=57.65 E-value=17 Score=27.95 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=22.4
Q ss_pred hhhhhhcCCCCCCCCHHHHHHHHHH
Q psy10340 38 AFFAMHDLDGNHVWDEEEVKMLFLK 62 (98)
Q Consensus 38 tFF~lHD~n~DG~~d~~El~ai~~k 62 (98)
.-|.+.|.+++|.++++.|+++++.
T Consensus 105 ~AF~~FD~~~~G~I~~d~lre~Ltt 129 (171)
T KOG0031|consen 105 NAFKTFDDEGSGKIDEDYLRELLTT 129 (171)
T ss_pred HHHHhcCccCCCccCHHHHHHHHHH
Confidence 5688999999999999999999874
No 62
>KOG0044|consensus
Probab=57.39 E-value=9.6 Score=29.17 Aligned_cols=25 Identities=16% Similarity=0.013 Sum_probs=22.4
Q ss_pred hhhhhhcCCCCCCCCHHHHHHHHHH
Q psy10340 38 AFFAMHDLDGNHVWDEEEVKMLFLK 62 (98)
Q Consensus 38 tFF~lHD~n~DG~~d~~El~ai~~k 62 (98)
.+|...|.|.||.+|-+|+.....+
T Consensus 151 ~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 151 KIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred HHHHHcCCCCCCcccHHHHHHHhhh
Confidence 8999999999999999998877664
No 63
>KOG4223|consensus
Probab=57.15 E-value=13 Score=31.08 Aligned_cols=45 Identities=20% Similarity=0.182 Sum_probs=32.2
Q ss_pred HHhhcCCCCCC--CCchhhhhhhcCCCCCCCCHHHHHHHHHHHhhhh
Q psy10340 23 WQEQDHMGNTE--FNPKAFFAMHDLDGNHVWDEEEVKMLFLKELDKM 67 (98)
Q Consensus 23 Weeed~i~~~~--FDp~tFF~lHD~n~DG~~d~~El~ai~~kEl~K~ 67 (98)
=.+.+.+.+.+ ..-..+|.+.|.|+||+++..||.+-+.....|.
T Consensus 64 ~~~fd~l~~ee~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~ 110 (325)
T KOG4223|consen 64 ADEFDQLTPEESQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKY 110 (325)
T ss_pred hhhhhhhCcchhHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHH
Confidence 33556666544 1112899999999999999999998887554443
No 64
>KOG0030|consensus
Probab=54.65 E-value=44 Score=25.24 Aligned_cols=58 Identities=17% Similarity=0.102 Sum_probs=37.4
Q ss_pred hhhhhhhcCCCCCCCCHHHHH---HHH-----HHHhhhhhCCCCCc--chHHHHHHHHHHHHHHHhhh
Q psy10340 37 KAFFAMHDLDGNHVWDEEEVK---MLF-----LKELDKMYKEGMPQ--NDLMERAEERQTVFTGLFCS 94 (98)
Q Consensus 37 ~tFF~lHD~n~DG~~d~~El~---ai~-----~kEl~K~y~~~~~e--dd~~e~~eE~~rMRehv~~e 94 (98)
+--|.|+|.++||.++...+- +.. ..||.|+-..-..+ .-.+--=|+...|.++|-++
T Consensus 14 ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vakn 81 (152)
T KOG0030|consen 14 KEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKN 81 (152)
T ss_pred HHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhc
Confidence 367999999999999987743 333 23566655433322 11333447778888888766
No 65
>KOG2643|consensus
Probab=52.64 E-value=25 Score=30.83 Aligned_cols=36 Identities=8% Similarity=0.202 Sum_probs=28.8
Q ss_pred hhhhhhcCCCCCCCCHHHHHHHHHHHhhh-hhCCCCC
Q psy10340 38 AFFAMHDLDGNHVWDEEEVKMLFLKELDK-MYKEGMP 73 (98)
Q Consensus 38 tFF~lHD~n~DG~~d~~El~ai~~kEl~K-~y~~~~~ 73 (98)
+.|.+.|.|+||.|+..|..++.-.=+.. +-.|.+.
T Consensus 429 vvF~IFD~N~Dg~LS~~EFl~Vmk~Rmhrgl~~p~~~ 465 (489)
T KOG2643|consen 429 VVFTIFDENNDGTLSHKEFLAVMKRRMHRGLELPKDT 465 (489)
T ss_pred eEEEEEccCCCCcccHHHHHHHHHHHhhccccCCccc
Confidence 66888899999999999999998876666 5555443
No 66
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=52.61 E-value=13 Score=31.10 Aligned_cols=25 Identities=24% Similarity=0.234 Sum_probs=22.3
Q ss_pred hhhhhhhcCCCCCCCCHHHHHHHHH
Q psy10340 37 KAFFAMHDLDGNHVWDEEEVKMLFL 61 (98)
Q Consensus 37 ~tFF~lHD~n~DG~~d~~El~ai~~ 61 (98)
...|...|.|+||.++.+|+..++.
T Consensus 360 ~~~F~~~D~d~DG~Is~eEf~~~~~ 384 (391)
T PRK12309 360 DAVFDALDLNHDGKITPEEMRAGLG 384 (391)
T ss_pred HHHHHHhCCCCCCCCcHHHHHHHHH
Confidence 4678999999999999999998875
No 67
>KOG0041|consensus
Probab=51.72 E-value=14 Score=29.75 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=22.5
Q ss_pred hhhhhhcCCCCCCCCHHHHHHHHHH
Q psy10340 38 AFFAMHDLDGNHVWDEEEVKMLFLK 62 (98)
Q Consensus 38 tFF~lHD~n~DG~~d~~El~ai~~k 62 (98)
+-|+..|.+.||++|-.||+.+..|
T Consensus 103 ~~Fk~yDe~rDgfIdl~ELK~mmEK 127 (244)
T KOG0041|consen 103 SMFKQYDEDRDGFIDLMELKRMMEK 127 (244)
T ss_pred HHHHHhcccccccccHHHHHHHHHH
Confidence 6789999999999999999988764
No 68
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=49.91 E-value=22 Score=23.34 Aligned_cols=26 Identities=19% Similarity=0.190 Sum_probs=22.3
Q ss_pred hhhhhhhcCCCCCCCCHHHHHHHHHH
Q psy10340 37 KAFFAMHDLDGNHVWDEEEVKMLFLK 62 (98)
Q Consensus 37 ~tFF~lHD~n~DG~~d~~El~ai~~k 62 (98)
..++.-.|.|+||.++-+|+..++..
T Consensus 54 ~~~i~~~D~n~dG~v~f~eF~~li~~ 79 (88)
T cd05027 54 DKVMETLDSDGDGECDFQEFMAFVAM 79 (88)
T ss_pred HHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 47888889999999999999888763
No 69
>KOG1707|consensus
Probab=48.56 E-value=14 Score=33.24 Aligned_cols=24 Identities=33% Similarity=0.434 Sum_probs=22.1
Q ss_pred hhhhhhcCCCCCCCCHHHHHHHHH
Q psy10340 38 AFFAMHDLDGNHVWDEEEVKMLFL 61 (98)
Q Consensus 38 tFF~lHD~n~DG~~d~~El~ai~~ 61 (98)
.-|..+|.|+||-|+.+|+.++|.
T Consensus 319 ~~f~~~D~d~Dg~L~p~El~~LF~ 342 (625)
T KOG1707|consen 319 DVFEKFDRDNDGALSPEELKDLFS 342 (625)
T ss_pred HHHHhccCCCCCCcCHHHHHHHhh
Confidence 457899999999999999999997
No 70
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=47.58 E-value=55 Score=21.09 Aligned_cols=27 Identities=26% Similarity=0.241 Sum_probs=19.3
Q ss_pred hhhhhcCC--CCCCCCHHHHHHHHHHHhh
Q psy10340 39 FFAMHDLD--GNHVWDEEEVKMLFLKELD 65 (98)
Q Consensus 39 FF~lHD~n--~DG~~d~~El~ai~~kEl~ 65 (98)
-|.-++.+ .+|+++.+||..++.+++-
T Consensus 13 ~f~~y~~~~~~~~~Is~~El~~ll~~~~g 41 (88)
T cd05030 13 VFHQYSVRKGHPDTLYKKEFKQLVEKELP 41 (88)
T ss_pred HHHHHhccCCCcccCCHHHHHHHHHHHhh
Confidence 34444433 4799999999999986543
No 71
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=47.33 E-value=22 Score=30.42 Aligned_cols=57 Identities=19% Similarity=0.345 Sum_probs=48.1
Q ss_pred CCCchhhhhhh-----cCCCCCCCCHHHHHHHHHHHhhhhhCCCCCcchHHHHHHHHHHHHH
Q psy10340 33 EFNPKAFFAMH-----DLDGNHVWDEEEVKMLFLKELDKMYKEGMPQNDLMERAEERQTVFT 89 (98)
Q Consensus 33 ~FDp~tFF~lH-----D~n~DG~~d~~El~ai~~kEl~K~y~~~~~edd~~e~~eE~~rMRe 89 (98)
+-.|+-|-... ++++||.-|.+|+...|..=|+.--+.+.+-.-..+..+|-++|||
T Consensus 140 sis~~nF~~i~~~~n~~fs~dmQqD~qEFl~fflD~LHedln~N~Srs~i~~l~de~e~~Re 201 (415)
T COG5533 140 SISPRNFIDILSGRNKLFSGDMQQDSQEFLIFFLDLLHEDLNGNKSRSPILELKDEFEEVRE 201 (415)
T ss_pred ccchHHHHHHHccccccccccchhhHHHHHHHHHHHHHhhhcCCcccccccccchHHHHHHh
Confidence 34466688866 6899999999999999988788777788887778899999999999
No 72
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=45.58 E-value=22 Score=28.14 Aligned_cols=41 Identities=27% Similarity=0.425 Sum_probs=34.3
Q ss_pred CCCchhhhhhhcCCCCCCCCHHHHHHHHHHHhhhhhCCCCC
Q psy10340 33 EFNPKAFFAMHDLDGNHVWDEEEVKMLFLKELDKMYKEGMP 73 (98)
Q Consensus 33 ~FDp~tFF~lHD~n~DG~~d~~El~ai~~kEl~K~y~~~~~ 73 (98)
.|||+.|+.......+|...++++...+.+.+.+.+.++.-
T Consensus 15 ~FdP~~Yl~~yY~~~~~~~~~~~~~~~~L~~l~~~f~~g~~ 55 (256)
T PF01234_consen 15 EFDPRAYLDTYYSFPSGDDAEDEILLFFLKNLHETFSSGGV 55 (256)
T ss_dssp HB-HHHHHHHHHSTSSS-CHHHHHHHHHHHHHHHHHHTSSS
T ss_pred cCCHHHHHHHhcCCCccCcccchhHHHHHHHHHHHhCccCc
Confidence 79999999999999999888899999999999998886653
No 73
>KOG0034|consensus
Probab=44.07 E-value=23 Score=26.86 Aligned_cols=25 Identities=28% Similarity=0.210 Sum_probs=21.6
Q ss_pred hhhhhhcCCCCCCCCHHHHHHHHHH
Q psy10340 38 AFFAMHDLDGNHVWDEEEVKMLFLK 62 (98)
Q Consensus 38 tFF~lHD~n~DG~~d~~El~ai~~k 62 (98)
.-|.-.|.++||.++-+|...++.+
T Consensus 151 ~t~~e~D~d~DG~IsfeEf~~~v~~ 175 (187)
T KOG0034|consen 151 KTFEEADTDGDGKISFEEFCKVVEK 175 (187)
T ss_pred HHHHHhCCCCCCcCcHHHHHHHHHc
Confidence 4567789999999999999988875
No 74
>PF15178 TOM_sub5: Mitochondrial import receptor subunit TOM5 homolog
Probab=42.19 E-value=21 Score=22.49 Aligned_cols=16 Identities=19% Similarity=0.333 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHhhhcc
Q psy10340 81 AEERQTVFTGLFCSLR 96 (98)
Q Consensus 81 ~eE~~rMRehv~~e~~ 96 (98)
+|+..+||+-|.+.++
T Consensus 14 eE~k~kmR~dvissvr 29 (51)
T PF15178_consen 14 EEMKRKMREDVISSVR 29 (51)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5678899999998876
No 75
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=42.19 E-value=32 Score=25.92 Aligned_cols=29 Identities=24% Similarity=0.242 Sum_probs=21.4
Q ss_pred chhhhhhhcCCCCCCCCHHHHHHHHHHHh
Q psy10340 36 PKAFFAMHDLDGNHVWDEEEVKMLFLKEL 64 (98)
Q Consensus 36 p~tFF~lHD~n~DG~~d~~El~ai~~kEl 64 (98)
+.....=.|.|+||.++.+|+.+|...-+
T Consensus 52 S~~ll~~~D~~~dg~~~~~el~~l~~~~~ 80 (212)
T PF06226_consen 52 SAYLLEGLDKDGDGKLDPEELAALAKEIF 80 (212)
T ss_pred HHHHHHhhhhcccCCCCHHHHHHHHHHHH
Confidence 33444445899999999999998876433
No 76
>PF09912 DUF2141: Uncharacterized protein conserved in bacteria (DUF2141); InterPro: IPR018673 This family of conserved hypothetical proteins has no known function.
Probab=40.81 E-value=12 Score=25.81 Aligned_cols=18 Identities=33% Similarity=0.392 Sum_probs=14.3
Q ss_pred hhhhhhcCCCCCCCCHHH
Q psy10340 38 AFFAMHDLDGNHVWDEEE 55 (98)
Q Consensus 38 tFF~lHD~n~DG~~d~~E 55 (98)
.+..+||.|+||.||...
T Consensus 56 Ai~v~hD~N~NgklD~n~ 73 (112)
T PF09912_consen 56 AIAVFHDENGNGKLDTNF 73 (112)
T ss_pred EEEEEEeCCCCCcCCcCC
Confidence 455689999999998653
No 77
>smart00426 TEA TEA domain.
Probab=39.71 E-value=42 Score=22.16 Aligned_cols=27 Identities=22% Similarity=0.431 Sum_probs=21.4
Q ss_pred CCCCCCCHHHHHHHHHHHhhhhhCCCCCc
Q psy10340 46 DGNHVWDEEEVKMLFLKELDKMYKEGMPQ 74 (98)
Q Consensus 46 n~DG~~d~~El~ai~~kEl~K~y~~~~~e 74 (98)
+|+++|. .+|+..|. |.-.+|.+.+.-
T Consensus 1 dg~~vWp-~~lE~Af~-~aL~~~~~~g~~ 27 (68)
T smart00426 1 DAEGVWS-PDIEQAFQ-EALAIYPPCGRR 27 (68)
T ss_pred CCCCcCc-HHHHHHHH-HHHHHcCccCcc
Confidence 5889999 89999999 566677776654
No 78
>PF14658 EF-hand_9: EF-hand domain
Probab=38.96 E-value=61 Score=21.03 Aligned_cols=24 Identities=8% Similarity=0.018 Sum_probs=20.9
Q ss_pred hhhhhhcCCCCCCCCHHHHHHHHH
Q psy10340 38 AFFAMHDLDGNHVWDEEEVKMLFL 61 (98)
Q Consensus 38 tFF~lHD~n~DG~~d~~El~ai~~ 61 (98)
+-|.++|.+..|.+.-..|.+++.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lr 25 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLR 25 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHH
Confidence 569999999999999999887764
No 79
>KOG1707|consensus
Probab=37.92 E-value=21 Score=32.26 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=20.3
Q ss_pred hhhhhhcCCCCCCCCHHHHHHHH
Q psy10340 38 AFFAMHDLDGNHVWDEEEVKMLF 60 (98)
Q Consensus 38 tFF~lHD~n~DG~~d~~El~ai~ 60 (98)
.-|.++|.|.||.++..|+...=
T Consensus 199 RIFki~D~d~D~~Lsd~Eln~fQ 221 (625)
T KOG1707|consen 199 RIFKISDSDNDGALSDAELNDFQ 221 (625)
T ss_pred HHHhhhccccccccchhhhhHHH
Confidence 67999999999999999987653
No 80
>KOG0038|consensus
Probab=36.80 E-value=22 Score=27.43 Aligned_cols=25 Identities=16% Similarity=0.379 Sum_probs=21.1
Q ss_pred hhhhhhcCCCCCCCCHHHHHHHHHH
Q psy10340 38 AFFAMHDLDGNHVWDEEEVKMLFLK 62 (98)
Q Consensus 38 tFF~lHD~n~DG~~d~~El~ai~~k 62 (98)
.-|++.|.|+|+++-.++|+..+++
T Consensus 112 YAFkIYDfd~D~~i~~~DL~~~l~~ 136 (189)
T KOG0038|consen 112 YAFKIYDFDGDEFIGHDDLEKTLTS 136 (189)
T ss_pred heeEEeecCCCCcccHHHHHHHHHH
Confidence 4477899999999999999887763
No 81
>PF15080 DUF4547: Domain of unknown function (DUF4547)
Probab=32.31 E-value=57 Score=25.41 Aligned_cols=49 Identities=18% Similarity=0.500 Sum_probs=33.1
Q ss_pred HHHHHHH---hhcCCCCCCCCch-hhhhhhcCCCCCCCCHHHHHHHHHHHhhhhh
Q psy10340 18 QLEEVWQ---EQDHMGNTEFNPK-AFFAMHDLDGNHVWDEEEVKMLFLKELDKMY 68 (98)
Q Consensus 18 ql~evWe---eed~i~~~~FDp~-tFF~lHD~n~DG~~d~~El~ai~~kEl~K~y 68 (98)
+++-||+ ++-|+...+-.+- |||.-|...+.-+ ..++...|.+.+.-+.
T Consensus 99 ~Ir~vwesvLee~GLqE~dv~aLCtFfiahgnkaehy--~a~~R~~yi~dv~~mI 151 (196)
T PF15080_consen 99 RIRVVWESVLEECGLQEGDVTALCTFFIAHGNKAEHY--AAKVRQMYIRDVTFMI 151 (196)
T ss_pred HHHHHHHHHHHHcCCCcccHHHHHHHHHHhcchHhHh--HHHHHHHHHhhHHHHH
Confidence 6688899 8889986555443 9999998877654 2345555555544433
No 82
>KOG3555|consensus
Probab=30.96 E-value=34 Score=29.53 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=21.2
Q ss_pred hhhhhhcCCCCCCCCHHHHHHHHH
Q psy10340 38 AFFAMHDLDGNHVWDEEEVKMLFL 61 (98)
Q Consensus 38 tFF~lHD~n~DG~~d~~El~ai~~ 61 (98)
=-|.--|.|.||.|+..||.+|+.
T Consensus 254 WMFnklD~N~Dl~Ld~sEl~~I~l 277 (434)
T KOG3555|consen 254 WMFNKLDTNYDLLLDQSELRAIEL 277 (434)
T ss_pred hhhhccccccccccCHHHhhhhhc
Confidence 357777999999999999999986
No 83
>PF05820 DUF845: Baculovirus protein of unknown function (DUF845); InterPro: IPR008563 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf81; it is a family of uncharacterised viral proteins.
Probab=28.77 E-value=24 Score=25.73 Aligned_cols=8 Identities=38% Similarity=0.978 Sum_probs=6.2
Q ss_pred chhhhhhh
Q psy10340 36 PKAFFAMH 43 (98)
Q Consensus 36 p~tFF~lH 43 (98)
|+||=..|
T Consensus 68 P~TFQ~v~ 75 (119)
T PF05820_consen 68 PRTFQTVH 75 (119)
T ss_pred Ccchhccc
Confidence 77887777
No 84
>TIGR01748 rhaA L-rhamnose isomerase. This enzyme interconverts L-rhamnose and L-rhamnulose. In some species, including E. coli, this is the first step in rhamnose catabolism. Sequential steps are catalyzed by rhamnulose kinase (rhaB), then rhamnulose-1-phosphate aldolase (rhaD) to yield glycerone phosphate and (S)-lactaldehyde. Characterization of this family is based on members in E. coli and Salmonella.
Probab=28.46 E-value=60 Score=28.01 Aligned_cols=64 Identities=20% Similarity=0.426 Sum_probs=42.5
Q ss_pred HHhhcCCCCCCCCchhhhhhhcCCCCC-CCC----------------HHHHHHHHHHH-----hhhhhCCCCCcchHHHH
Q psy10340 23 WQEQDHMGNTEFNPKAFFAMHDLDGNH-VWD----------------EEEVKMLFLKE-----LDKMYKEGMPQNDLMER 80 (98)
Q Consensus 23 Weeed~i~~~~FDp~tFF~lHD~n~DG-~~d----------------~~El~ai~~kE-----l~K~y~~~~~edd~~e~ 80 (98)
|+++.+|.=+ |||.+| -|+.=.+| .|+ +-+|-+-|.++ |..++-|++..+-...+
T Consensus 117 ~Ak~~glglD-fNpn~F--sh~~~k~G~SLshpD~~iR~fwI~H~~~c~~I~~~fg~~lGs~~l~niWipDG~kd~~~d~ 193 (414)
T TIGR01748 117 WAKANGLGLD-FNPTCF--SHPLSADGFTLSHPDDSIRQFWIDHCKASRRISEYFGKELGTPSVMNIWIPDGMKDIPVDR 193 (414)
T ss_pred HHHHcCCCcC-cCcccC--CCccccCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCchhheeecCCCCCCCCccc
Confidence 8899999877 999888 55555577 444 33465556666 55788888877665444
Q ss_pred HHHHHHHHH
Q psy10340 81 AEERQTVFT 89 (98)
Q Consensus 81 ~eE~~rMRe 89 (98)
---+.|+.+
T Consensus 194 ~~~r~Rl~e 202 (414)
T TIGR01748 194 LTPRKRLLE 202 (414)
T ss_pred ccHHHHHHH
Confidence 433555554
No 85
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=27.53 E-value=52 Score=19.32 Aligned_cols=21 Identities=29% Similarity=0.411 Sum_probs=17.5
Q ss_pred CCCCCCHHHHHHHHHHHhhhh
Q psy10340 47 GNHVWDEEEVKMLFLKELDKM 67 (98)
Q Consensus 47 ~DG~~d~~El~ai~~kEl~K~ 67 (98)
....|+..|+++++.+|+-.+
T Consensus 21 d~~~Lsk~Elk~Ll~~Elp~f 41 (44)
T PF01023_consen 21 DKDTLSKKELKELLEKELPNF 41 (44)
T ss_dssp STTSEEHHHHHHHHHHHSTTT
T ss_pred CCCeEcHHHHHHHHHHHHHHH
Confidence 457899999999999998544
No 86
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=25.18 E-value=91 Score=17.70 Aligned_cols=21 Identities=33% Similarity=0.439 Sum_probs=14.3
Q ss_pred CCCCHHHHHHHHHHHhhhhhCCC
Q psy10340 49 HVWDEEEVKMLFLKELDKMYKEG 71 (98)
Q Consensus 49 G~~d~~El~ai~~kEl~K~y~~~ 71 (98)
|.||.+|-+.+.. +-+.|+.+
T Consensus 2 ~~Wt~eE~~~l~~--~v~~~g~~ 22 (48)
T PF00249_consen 2 GPWTEEEDEKLLE--AVKKYGKD 22 (48)
T ss_dssp -SS-HHHHHHHHH--HHHHSTTT
T ss_pred CCCCHHHHHHHHH--HHHHhCCc
Confidence 6799999877766 67777664
No 87
>KOG3478|consensus
Probab=25.03 E-value=1.5e+02 Score=21.65 Aligned_cols=30 Identities=17% Similarity=0.240 Sum_probs=23.6
Q ss_pred HHHHHHhhhhhCCCCCcchHHHHHHHHHHHHHHHhh
Q psy10340 58 MLFLKELDKMYKEGMPQNDLMERAEERQTVFTGLFC 93 (98)
Q Consensus 58 ai~~kEl~K~y~~~~~edd~~e~~eE~~rMRehv~~ 93 (98)
..|.+|+..+- +..+.+++|+..||+.|++
T Consensus 79 efI~~Eikr~e------~~i~d~q~e~~k~R~~v~k 108 (120)
T KOG3478|consen 79 EFISKEIKRLE------NQIRDSQEEFEKQREAVIK 108 (120)
T ss_pred HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Confidence 34667776654 6778899999999999986
No 88
>KOG0038|consensus
Probab=24.23 E-value=67 Score=24.85 Aligned_cols=20 Identities=30% Similarity=0.456 Sum_probs=17.8
Q ss_pred hcCCCCCCCCHHHHHHHHHH
Q psy10340 43 HDLDGNHVWDEEEVKMLFLK 62 (98)
Q Consensus 43 HD~n~DG~~d~~El~ai~~k 62 (98)
-|.+|||.|+-.|++.++.+
T Consensus 158 AD~DgDgkl~~~eFe~~i~r 177 (189)
T KOG0038|consen 158 ADLDGDGKLSFAEFEHVILR 177 (189)
T ss_pred hcCCCCCcccHHHHHHHHHh
Confidence 48999999999999998875
No 89
>PF15005 IZUMO: Izumo sperm-egg fusion
Probab=23.63 E-value=2.1e+02 Score=21.46 Aligned_cols=55 Identities=20% Similarity=0.154 Sum_probs=37.8
Q ss_pred hhhhhcCCC-CCCCCHHH---HHHHHHHHhhhhhCCCCCcchHHHHHHHHHHHHHHHhhhcc
Q psy10340 39 FFAMHDLDG-NHVWDEEE---VKMLFLKELDKMYKEGMPQNDLMERAEERQTVFTGLFCSLR 96 (98)
Q Consensus 39 FF~lHD~n~-DG~~d~~E---l~ai~~kEl~K~y~~~~~edd~~e~~eE~~rMRehv~~e~~ 96 (98)
||..+..|+ =|+++++- +...|.+++.++++.+-.+.- -.. |+..||+.+.+++-
T Consensus 49 ~~~~~~~~a~~g~vd~~~L~~va~~~~~~lkrl~~s~~kg~~--ll~-EL~~~r~~~~~~lk 107 (160)
T PF15005_consen 49 FFLPYAEDAFMGVVDEDTLDKVAWSFKNQLKRLTDSDLKGEP--LLK-ELVWMRQNQKKELK 107 (160)
T ss_pred cccccchhhhhhhccHHHHHHHHHHHHHHHHHHhcCCcccch--HHH-HHHHHHHHHHHHHH
Confidence 455554443 36777766 455688999999977765533 333 99999999987763
No 90
>PF15304 AKAP2_C: A-kinase anchor protein 2 C-terminus
Probab=23.37 E-value=1.2e+02 Score=25.22 Aligned_cols=27 Identities=19% Similarity=0.192 Sum_probs=21.1
Q ss_pred HHHHHHHHhhhhhCCCCCcchHHHHHHHHHHHHHHHh
Q psy10340 56 VKMLFLKELDKMYKEGMPQNDLMERAEERQTVFTGLF 92 (98)
Q Consensus 56 l~ai~~kEl~K~y~~~~~edd~~e~~eE~~rMRehv~ 92 (98)
...++.+||. ++.++++|+.++|.-++
T Consensus 211 t~s~iE~EIr----------~~~eRE~EL~~QR~~~~ 237 (344)
T PF15304_consen 211 TSSMIEEEIR----------AAQEREEELKRQRRSAL 237 (344)
T ss_pred cHHHHHHHHH----------HHHHHHHHHHHHHHHhh
Confidence 4667777776 67899999999996543
No 91
>PRK11546 zraP zinc resistance protein; Provisional
Probab=23.18 E-value=1.4e+02 Score=22.02 Aligned_cols=32 Identities=16% Similarity=0.168 Sum_probs=26.7
Q ss_pred HhhhhhCCCCCcch-HHHHHHHHHHHHHHHhhh
Q psy10340 63 ELDKMYKEGMPQND-LMERAEERQTVFTGLFCS 94 (98)
Q Consensus 63 El~K~y~~~~~edd-~~e~~eE~~rMRehv~~e 94 (98)
||.-++..++|+.. +.....|+..+|..+..+
T Consensus 76 ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~ 108 (143)
T PRK11546 76 EYNALLTANPPDSSKINAVAKEMENLRQSLDEL 108 (143)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 68888888888887 888999999999877643
No 92
>COG0501 HtpX Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones]
Probab=22.90 E-value=81 Score=23.67 Aligned_cols=21 Identities=14% Similarity=0.441 Sum_probs=19.0
Q ss_pred CCCHHHHHHHHHHHhhhhhCC
Q psy10340 50 VWDEEEVKMLFLKELDKMYKE 70 (98)
Q Consensus 50 ~~d~~El~ai~~kEl~K~y~~ 70 (98)
.++++||++++..|+-|+..-
T Consensus 151 ~l~~dEl~aVlaHElgHi~~r 171 (302)
T COG0501 151 LLNDDELEAVLAHELGHIKNR 171 (302)
T ss_pred hCCHHHHHHHHHHHHHHHhcc
Confidence 689999999999999999854
No 93
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=22.85 E-value=1.6e+02 Score=16.75 Aligned_cols=34 Identities=15% Similarity=0.284 Sum_probs=25.6
Q ss_pred hhhhhhcCCCCCCCCHHHHHHHHHHHhhhhhCCCCCc
Q psy10340 38 AFFAMHDLDGNHVWDEEEVKMLFLKELDKMYKEGMPQ 74 (98)
Q Consensus 38 tFF~lHD~n~DG~~d~~El~ai~~kEl~K~y~~~~~e 74 (98)
++|.+-++..+ .+.++|++-|.+ |-+.|-|+...
T Consensus 2 ~~y~vLgl~~~--~~~~~ik~ay~~-l~~~~HPD~~~ 35 (60)
T smart00271 2 DYYEILGVPRD--ASLDEIKKAYRK-LALKYHPDKNP 35 (60)
T ss_pred CHHHHcCCCCC--CCHHHHHHHHHH-HHHHHCcCCCC
Confidence 46777777665 899999999985 77777676654
No 94
>PRK14290 chaperone protein DnaJ; Provisional
Probab=22.77 E-value=2.9e+02 Score=22.42 Aligned_cols=37 Identities=19% Similarity=0.339 Sum_probs=25.8
Q ss_pred hhhhhhhcCCCCCCCCHHHHHHHHHHHhhhhhCCCCCcch
Q psy10340 37 KAFFAMHDLDGNHVWDEEEVKMLFLKELDKMYKEGMPQND 76 (98)
Q Consensus 37 ~tFF~lHD~n~DG~~d~~El~ai~~kEl~K~y~~~~~edd 76 (98)
+.||.+-+++.+ .+.+||++-|.+=.-|+. |+...++
T Consensus 3 ~d~y~vLgv~~~--a~~~eik~ayr~la~~~H-PD~~~~~ 39 (365)
T PRK14290 3 KDYYKILGVDRN--ASQEDIKKAFRELAKKWH-PDLHPGN 39 (365)
T ss_pred CChhhhcCCCCC--CCHHHHHHHHHHHHHHHC-cCCCCCc
Confidence 467888888775 899999999997444444 5443333
No 95
>PF00550 PP-binding: Phosphopantetheine attachment site; InterPro: IPR006163 Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups []. The amino-terminal region of the ACP proteins is well defined and consists of alpha four helices arranged in a right-handed bundle held together by interhelical hydrophobic interactions. The Asp-Ser-Leu (DSL)motif is conserved in all of the ACP sequences, and the 4'-PP prosthetic group is covalently linked via a phosphodiester bond to the serine residue. The DSL sequence is present at the amino terminus of helix II, a domain of the protein referred to as the recognition helix and which is responsible for the interaction of ACPs with the enzymes of type II fatty acid synthesis [].; GO: 0048037 cofactor binding; PDB: 3EJB_E 3EJE_G 1L0I_A 2FHS_C 3EJD_E 2FAE_B 2FAD_B 2FAC_B 2K94_A 1ACP_A ....
Probab=22.53 E-value=51 Score=19.18 Aligned_cols=24 Identities=33% Similarity=0.542 Sum_probs=18.8
Q ss_pred HHHHHHHHhhcCCCCCCCCch-hhh
Q psy10340 17 KQLEEVWQEQDHMGNTEFNPK-AFF 40 (98)
Q Consensus 17 ~ql~evWeeed~i~~~~FDp~-tFF 40 (98)
+++++.|.+.=+++...++|. .||
T Consensus 1 e~l~~~~~~~l~~~~~~i~~~~~~~ 25 (67)
T PF00550_consen 1 EQLREIIAEVLGVDPEEIDPDTDFF 25 (67)
T ss_dssp HHHHHHHHHHHTSSGGCTSTTSBTT
T ss_pred CHHHHHHHHHHCcCHhhCCCCCCHH
Confidence 478888997777887889888 455
No 96
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=21.77 E-value=1.1e+02 Score=26.37 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=27.2
Q ss_pred CCCHHHHHHHHHHHhhhhhCCCCCcchHHHHHHHHHHHHHHHhhhccc
Q psy10340 50 VWDEEEVKMLFLKELDKMYKEGMPQNDLMERAEERQTVFTGLFCSLRA 97 (98)
Q Consensus 50 ~~d~~El~ai~~kEl~K~y~~~~~edd~~e~~eE~~rMRehv~~e~~~ 97 (98)
+|+..||+|...+||+ +|.+=+..||.-+.+.|.+
T Consensus 297 IL~~p~Lra~W~~El~-------------~Mr~Ri~~mR~~lv~~L~~ 331 (396)
T COG1448 297 ILNNPELRAEWEQELE-------------EMRQRILEMRQALVDALKA 331 (396)
T ss_pred HhCCHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHh
Confidence 5777899999997765 5666778888888877764
No 97
>PLN02736 long-chain acyl-CoA synthetase
Probab=21.71 E-value=65 Score=27.11 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=23.5
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhhhC
Q psy10340 45 LDGNHVWDEEEVKMLFLKELDKMYK 69 (98)
Q Consensus 45 ~n~DG~~d~~El~ai~~kEl~K~y~ 69 (98)
++..|.+....|++.|.++|+++|+
T Consensus 624 lT~~~Ki~R~~i~~~~~~~i~~~y~ 648 (651)
T PLN02736 624 LTPTFKVKRPQAKAYFAKAISDMYA 648 (651)
T ss_pred CChhhhhhHHHHHHHHHHHHHHHHh
Confidence 5899999999999999999999995
No 98
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=21.21 E-value=76 Score=25.65 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=18.5
Q ss_pred CCCCCCHHHHHHHHHHHhhhhhCC
Q psy10340 47 GNHVWDEEEVKMLFLKELDKMYKE 70 (98)
Q Consensus 47 ~DG~~d~~El~ai~~kEl~K~y~~ 70 (98)
+++.+....++.||.+||.| |+|
T Consensus 243 ~~~~i~~~~fe~lf~~eL~k-f~~ 265 (353)
T cd09236 243 PATEVAPAHFEDLFDKRLAK-YDK 265 (353)
T ss_pred ccccccHHHHHHHHHHHHHH-hhH
Confidence 44557777889999999988 866
No 99
>PF01839 FG-GAP: FG-GAP repeat; InterPro: IPR013517 This region contains the extracellular repeat that is found in up to seven copies in alpha integrins. This repeat has been predicted to fold into a beta propeller structure []. The repeat is called the FG-GAP repeat after two conserved motifs in the repeat []. The FG-GAP repeats are found in the N terminus of integrin alpha chains, a region that has been shown to be important for ligand binding []. A putative Ca2+ binding motif is found in some of the repeats. ; PDB: 1L5G_A 3IJE_A 1M1X_A 1JV2_A 1U8C_A 3V4P_C 3V4V_C 3VI3_A 3VI4_C 2VDN_A ....
Probab=21.18 E-value=41 Score=18.70 Aligned_cols=10 Identities=30% Similarity=0.445 Sum_probs=7.2
Q ss_pred hcCCCCCCCC
Q psy10340 43 HDLDGNHVWD 52 (98)
Q Consensus 43 HD~n~DG~~d 52 (98)
-|.|+||+-|
T Consensus 8 gD~ngDG~~D 17 (34)
T PF01839_consen 8 GDFNGDGYDD 17 (34)
T ss_dssp ESTSSSSS-E
T ss_pred EEcCCCCCcc
Confidence 4899999743
Done!