RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy10340
         (98 letters)



>gnl|CDD|218490 pfam05193, Peptidase_M16_C, Peptidase M16 inactive domain.
           Peptidase M16 consists of two structurally related
           domains. One is the active peptidase, whereas the other
           is inactive. The two domains hold the substrate like a
           clamp.
          Length = 182

 Score = 29.4 bits (66), Expect = 0.21
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 5/53 (9%)

Query: 30  GNTEFNPKAFFAMH-DLDGNHVWDEEEVKMLFLKELDKMYKEGMPQNDLMERA 81
               ++    F ++ DLD  ++   +EV  L  +EL K+ +EG+ + +L ERA
Sbjct: 130 FFDSYSDTGLFGIYADLDPENL---DEVIELIFEELKKLAEEGITEEEL-ERA 178


>gnl|CDD|163625 cd07382, MPP_DR1281, Deinococcus radiodurans DR1281 and related
          proteins, metallophosphatase domain.  DR1281 is an
          uncharacterized Deinococcus radiodurans protein with a
          domain that belongs to the metallophosphatase (MPP)
          superfamily.  MPPs are functionally diverse, but all
          share a conserved domain with an active site consisting
          of two metal ions (usually manganese, iron, or zinc)
          coordinated with octahedral geometry by a cage of
          histidine, aspartate, and asparagine residues. The MPP
          superfamily includes: Mre11/SbcD-like exonucleases,
          Dbr1-like RNA lariat debranching enzymes, YfcE-like
          phosphodiesterases, purple acid phosphatases (PAPs),
          YbbF-like UDP-2,3-diacylglucosamine hydrolases, and
          acid sphingomyelinases (ASMases).  The conserved domain
          is a double beta-sheet sandwich with a di-metal active
          site made up of residues located at the C-terminal side
          of the sheets. This domain is thought to allow for
          productive metal coordination.
          Length = 255

 Score = 26.3 bits (59), Expect = 2.3
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 6/32 (18%)

Query: 47 GNHVWDEEEVKMLFLKELDKM-----YKEGMP 73
          GNH WD++E+   F+ E  ++     Y  G P
Sbjct: 65 GNHTWDKKEILD-FIDEEPRLLRPANYPPGTP 95


>gnl|CDD|218956 pfam06248, Zw10, Centromere/kinetochore Zw10.  Zw10 and rough deal
           proteins are both required for correct metaphase
           check-pointing during mitosis. These proteins bind to
           the centromere/kinetochore.
          Length = 593

 Score = 26.6 bits (59), Expect = 2.6
 Identities = 9/37 (24%), Positives = 14/37 (37%)

Query: 3   FSTLTFQVHHPGSKKQLEEVWQEQDHMGNTEFNPKAF 39
               T  +    S+ +L  V Q    +G  E+  K F
Sbjct: 194 TKKTTLHLSKDESQGELSSVLQALAVLGELEYKLKKF 230


>gnl|CDD|235869 PRK06830, PRK06830, diphosphate--fructose-6-phosphate
          1-phosphotransferase; Provisional.
          Length = 443

 Score = 26.0 bits (58), Expect = 3.6
 Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 35 NPKAFFAMHDLDGNHVWDEEEVKMLFLKELDKMYKEGMPQNDL--MERAEERQTVF 88
          +P  +        + V D +  ++LF   L  + +E  P  +    E+A  R+ ++
Sbjct: 22 SPLIYSLAAGDTTHFVSDSD--RVLFDVSLSLIKEEDAPGTEPPSFEKAGPREKIY 75


>gnl|CDD|222496 pfam14014, DUF4230, Protein of unknown function (DUF4230).  This
           family of proteins is functionally uncharacterized. This
           family of proteins is found in bacteria. Proteins in
           this family are typically between 203 and 228 amino
           acids in length.
          Length = 154

 Score = 25.3 bits (56), Expect = 4.7
 Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 8/39 (20%)

Query: 62  KELDKMYKEG-------MPQNDLMERAEER-QTVFTGLF 92
           ++L   YKE          ++ L+ERA E  +     L 
Sbjct: 103 EDLTAAYKEAKKKIEKAALESGLLERARENAEKALEQLL 141


>gnl|CDD|219120 pfam06646, Mycoplasma_p37, High affinity transport system protein
           p37.  This family consists of several high affinity
           transport system protein p37 sequences which are
           specific to Mycoplasma species. The p37 gene is part of
           an operon encoding two additional proteins which are
           highly similar to components of the periplasmic
           binding-protein-dependent transport systems of
           Gram-negative bacteria.It has been suggested that p37 is
           part of a homologous, high-affinity transport system in
           M. hyorhinis, a Gram-positive bacterium.
          Length = 331

 Score = 25.2 bits (55), Expect = 6.0
 Identities = 10/31 (32%), Positives = 17/31 (54%)

Query: 60  FLKELDKMYKEGMPQNDLMERAEERQTVFTG 90
           F K LD+ Y +G   + L + AE+  ++F  
Sbjct: 81  FDKNLDQFYVDGTESDPLRKIAEKINSLFNE 111


>gnl|CDD|182170 PRK09961, PRK09961, exoaminopeptidase; Provisional.
          Length = 344

 Score = 24.7 bits (54), Expect = 9.8
 Identities = 8/18 (44%), Positives = 14/18 (77%)

Query: 53 EEEVKMLFLKELDKMYKE 70
          E+EV+ + L+E D++ KE
Sbjct: 19 EQEVRQILLEEADRLQKE 36


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.321    0.134    0.412 

Gapped
Lambda     K      H
   0.267   0.0812    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,117,488
Number of extensions: 423868
Number of successful extensions: 387
Number of sequences better than 10.0: 1
Number of HSP's gapped: 387
Number of HSP's successfully gapped: 21
Length of query: 98
Length of database: 10,937,602
Length adjustment: 64
Effective length of query: 34
Effective length of database: 8,098,946
Effective search space: 275364164
Effective search space used: 275364164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.0 bits)