RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10340
(98 letters)
>1snl_A Nucleobindin 1, calnuc; EF-hand, calcium-binding, metal binding
protein; NMR {Homo sapiens} SCOP: a.39.1.7
Length = 103
Score = 75.4 bits (185), Expect = 1e-19
Identities = 30/76 (39%), Positives = 47/76 (61%)
Query: 17 KQLEEVWQEQDHMGNTEFNPKAFFAMHDLDGNHVWDEEEVKMLFLKELDKMYKEGMPQND 76
L+EVW+E D + FNPK FF +HD++ + V DE+E++ LF KEL+K+Y ++D
Sbjct: 3 HMLKEVWEELDGLDPNRFNPKTFFILHDINSDGVLDEQELEALFTKELEKVYDPKNEEDD 62
Query: 77 LMERAEERQTVFTGLF 92
+ E EER + +
Sbjct: 63 MREMEEERLRMREHVM 78
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic,
ER, golgi, transport, disulfide bond, endopla reticulum,
ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A
3lcp_C
Length = 143
Score = 36.1 bits (83), Expect = 5e-04
Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
Query: 16 KKQLEEVWQEQDHMGNTEFNPKAFFAMHDLDGNHVWDEEEVKMLFLKELDKMYKEGMPQN 75
+ LE V + + + + +F MHD DGN++ D E + ++KE +
Sbjct: 50 MEHLEGVINKPEAEMSPQELQLHYFKMHDYDGNNLLDGLE----LSTAITHVHKEEGSEQ 105
Query: 76 DLMERAEERQTV 87
+ +E +
Sbjct: 106 APLMSEDELINI 117
>3k5w_A Carbohydrate kinase; 11206B,helicobacter pylori,PSI-II, NYSGXRC,
, structural genomics, protein structure initiative;
2.60A {Helicobacter pylori}
Length = 475
Score = 29.0 bits (66), Expect = 0.21
Identities = 7/23 (30%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 61 LKELDK--MYKEGMPQNDLMERA 81
+ LDK + + + ++ LME A
Sbjct: 9 VNALDKRAIEELFLSEDILMENA 31
>2o8n_A APOA-I binding protein; rossmann fold, protein binding; 2.00A
{Mus musculus} PDB: 2dg2_A
Length = 265
Score = 28.4 bits (64), Expect = 0.30
Identities = 5/22 (22%), Positives = 10/22 (45%), Gaps = 2/22 (9%)
Query: 62 KELDK--MYKEGMPQNDLMERA 81
+ +D+ + + LME A
Sbjct: 37 QAVDQELFNEYQFSVDQLMELA 58
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.8 bits (61), Expect = 0.45
Identities = 11/63 (17%), Positives = 26/63 (41%), Gaps = 14/63 (22%)
Query: 23 WQEQDHMGNTEFNPKAFFAMHDLDGNHVWDEEEVKMLFLKELDKMYKEGMPQNDLMERAE 82
W+E E + + +LD E+E + K+L++ + Q++ +E+ +
Sbjct: 90 WRE-------EQRKR----LQELDAASKVMEQEWREKAKKDLEEWNQR---QSEQVEKNK 135
Query: 83 ERQ 85
Sbjct: 136 INN 138
>3rss_A Putative uncharacterized protein; unknown function,
ADP/ATP-dependent NAD(P)H-hydrate dehydrat lyase; HET:
NAP; 1.95A {Thermotoga maritima} PDB: 3rrb_A* 2ax3_A*
3rre_A* 3rrj_A* 3rs8_A* 3rs9_A* 3rsf_A* 3rsg_A* 3rrf_A*
3rsq_A* 3rt7_A* 3rt9_A* 3rta_A* 3rtb_A* 3rtc_A* 3rtd_A*
3rte_A* 3rtg_A* 3ru2_A* 3ru3_A*
Length = 502
Score = 27.9 bits (63), Expect = 0.55
Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
Query: 62 KELDK--MYKEGMPQNDLMERA 81
KE+D+ + + G+ LMERA
Sbjct: 14 KEIDELTIKEYGVDSRILMERA 35
>2kld_A Polycystin-2; PC2, PKD2, calcium binding domain, EF hand,
cytosolic, calcium, coiled coil, disease mutation,
glycoprotein, ION transport; NMR {Homo sapiens} PDB:
2kle_A 2kq6_A 2y4q_A
Length = 123
Score = 27.3 bits (60), Expect = 0.60
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 13 PGSKKQLEEVWQEQDHMGNTEFNPKAFFAMHDLDGNHVWDEEEVKMLFLKELDK 66
G K +E+ Q+ G+T+ +A F +D DG+ E E + + +L+K
Sbjct: 59 GGGKLNFDELRQDLKGKGHTDAEIEAIFTKYDQDGDQELTEHEHQQM-RDDLEK 111
>3eb8_A Cysteine protease-like VIRA; beta sheet, alpha helix, hydrolase,
secreted, THIO protease, virulence; 2.40A {Shigella
flexneri}
Length = 358
Score = 27.0 bits (59), Expect = 0.99
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 53 EEEVKMLFLKELDKMYKEGMPQNDLMERAEERQTVFTGLF 92
++E++ML +++K+ PQ DL + E + +FT LF
Sbjct: 186 KKELQMLSYNQVNKIINSNFPQQDLCFQTE--KLLFTSLF 223
>3a8r_A Putative uncharacterized protein; EF-hand, membrane,
oxidoreductase, transmembrane, calcium BI protein; 2.40A
{Oryza sativa japonica group}
Length = 179
Score = 26.6 bits (58), Expect = 1.4
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 15 SKKQLEEVWQEQDHMGNTEFNPKAFFAMHDLDGNHVWDEEEVK 57
+K +L++ + EQ + + FF M D + + EEVK
Sbjct: 80 TKDELKDFY-EQLTDQGFDNRLRTFFDMVDKNADGRLTAEEVK 121
>1jzt_A Hypothetical 27.5 kDa protein in SPX19-GCR2 inter region; yeast
hypothetical protein, structural genomics, selenomethi
PSI; 1.94A {Saccharomyces cerevisiae} SCOP: c.104.1.1
Length = 246
Score = 26.5 bits (59), Expect = 1.4
Identities = 9/23 (39%), Positives = 11/23 (47%), Gaps = 3/23 (13%)
Query: 62 KELDK--MYKE-GMPQNDLMERA 81
E+DK M + G LME A
Sbjct: 13 AEIDKELMGPQIGFTLQQLMELA 35
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.4 bits (57), Expect = 1.7
Identities = 7/57 (12%), Positives = 15/57 (26%), Gaps = 17/57 (29%)
Query: 18 QLEEVWQEQ-DHMGNTEFNP-------KAFFAMHD-------LDGNHVWDEEEVKML 59
Q++ W + DH N + + L +V + +
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL--NVQNAKAWNAF 262
>1t71_A Phosphatase, conserved HYPO; crystal, X-RAY crystallography,
structural GENO berkeley structural genomics center,
BSGC, PSI; 2.10A {Mycoplasma pneumoniae M129} SCOP:
d.159.1.9
Length = 281
Score = 25.9 bits (57), Expect = 2.2
Identities = 4/17 (23%), Positives = 9/17 (52%)
Query: 47 GNHVWDEEEVKMLFLKE 63
GNH W ++ + + +
Sbjct: 70 GNHTWFQKLDLAVVINK 86
>1dkq_A Phytase; histidine acid phosphatase fold, hydrolase; HET: IHP;
2.05A {Escherichia coli} SCOP: c.60.1.2 PDB: 1dkp_A*
1dkm_A 1dkn_A 1dko_A 1dkl_A
Length = 410
Score = 26.1 bits (56), Expect = 2.3
Identities = 10/87 (11%), Positives = 22/87 (25%)
Query: 3 FSTLTFQVHHPGSKKQLEEVWQEQDHMGNTEFNPKAFFAMHDLDGNHVWDEEEVKMLFLK 62
VH + ++ N A+ G + D + +
Sbjct: 105 APDCAITVHTQTDTSSPDPLFNPLKTGVCQLDNANVTDAILSRAGGSIADFTGHRQTAFR 164
Query: 63 ELDKMYKEGMPQNDLMERAEERQTVFT 89
EL+++ L ++ T
Sbjct: 165 ELERVLNFPQSNLCLKREKQDESCSLT 191
>1t70_A Phosphatase; crystal, X-RAY crystallography, structural GENO
berkeley structural genomics center, BSGC, PSI, protein
STR initiative; 2.30A {Deinococcus radiodurans} SCOP:
d.159.1.9
Length = 255
Score = 25.8 bits (57), Expect = 2.6
Identities = 4/17 (23%), Positives = 10/17 (58%)
Query: 47 GNHVWDEEEVKMLFLKE 63
GNH W +++ + ++
Sbjct: 64 GNHAWHHKDIYPMLSED 80
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma
lanceolatum} SCOP: a.39.1.5
Length = 185
Score = 25.3 bits (55), Expect = 4.0
Identities = 9/61 (14%), Positives = 19/61 (31%), Gaps = 6/61 (9%)
Query: 16 KKQLEEVWQEQDHMGNTEFNPKAFFAMHDLDGNHVWDEEEVKMLF------LKELDKMYK 69
+K + D + F D+ G+ + D EE + ++ +Y
Sbjct: 87 EKTIATCKSVADLPAWCQNRIPFLFKGMDVSGDGIVDLEEFQNYCKNFQLQCADVPAVYN 146
Query: 70 E 70
Sbjct: 147 V 147
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.4 bits (55), Expect = 4.5
Identities = 6/26 (23%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 60 FLKELDKMYKEGMPQ-NDLMERAEER 84
+ +EL +Y+ DL++ + E
Sbjct: 169 YFEELRDLYQTYHVLVGDLIKFSAET 194
Score = 25.0 bits (54), Expect = 6.3
Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 9/73 (12%)
Query: 7 TFQVHHPGSKKQLEEVWQEQDHMGNTEFNPKAF--FAMHDLDGNHVWDEEEVKMLFLKEL 64
F P + E + + E K F + ++ + V ++V L L E
Sbjct: 36 QFNKILP---EPTEGFAADDEPTTPAELVGK-FLGYVSSLVEPSKVGQFDQVLNLCLTEF 91
Query: 65 DKMYKEGMPQNDL 77
+ Y + ND+
Sbjct: 92 ENCY---LEGNDI 101
>1ztc_A Hypothetical protein TM0894; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI, hydrolase; HET: MSE; 2.10A {Thermotoga maritima}
SCOP: d.157.1.11
Length = 221
Score = 25.1 bits (55), Expect = 4.5
Identities = 9/72 (12%), Positives = 27/72 (37%), Gaps = 9/72 (12%)
Query: 27 DHMGNTEFNPKAFFAMHDLDGNHVWDEEEVKMLFLKELDKMYKEGMPQNDLMERAEERQT 86
DH+ N+ A F +H++ + F + ++Y + + + + ++
Sbjct: 85 DHIFNSVLFENATFYVHEVYKTKNYLS------FGTIVGRIYSKVISSWKNVVLLKGEES 138
Query: 87 VFTGLFCSLRAI 98
+F ++
Sbjct: 139 LFDE---KVKVF 147
>2z06_A Putative uncharacterized protein TTHA0625; metal binding protein,
structural genomics, NPPSFA; 2.20A {Thermus
thermophilus} SCOP: d.159.1.10 PDB: 2cv9_A
Length = 252
Score = 24.7 bits (54), Expect = 5.9
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 47 GNHVWDEEEV 56
GNH WD +EV
Sbjct: 64 GNHAWDHKEV 73
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug
development, protein degradation, hydrolase-hydrolase
inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB:
3unh_N
Length = 199
Score = 24.5 bits (54), Expect = 6.8
Identities = 5/16 (31%), Positives = 7/16 (43%)
Query: 64 LDKMYKEGMPQNDLME 79
+D YK GM +
Sbjct: 138 VDAAYKPGMTPEECRR 153
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural
genomics, structural genomics consortium, SGC,
hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Length = 230
Score = 24.1 bits (53), Expect = 9.8
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 4/39 (10%)
Query: 54 EEVKMLFLKELDKMYKEGMPQND----LMERAEERQTVF 88
+++ L E DK+ +EG Q +Q +
Sbjct: 165 GSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLA 203
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.134 0.412
Gapped
Lambda K H
0.267 0.0790 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,586,694
Number of extensions: 82478
Number of successful extensions: 274
Number of sequences better than 10.0: 1
Number of HSP's gapped: 273
Number of HSP's successfully gapped: 51
Length of query: 98
Length of database: 6,701,793
Length adjustment: 64
Effective length of query: 34
Effective length of database: 4,914,849
Effective search space: 167104866
Effective search space used: 167104866
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.3 bits)