RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10340
         (98 letters)



>d1snla_ a.39.1.7 (A:) Nucleobindin 1 (CALNUC) {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 99

 Score = 53.1 bits (127), Expect = 2e-11
 Identities = 30/74 (40%), Positives = 47/74 (63%)

Query: 19 LEEVWQEQDHMGNTEFNPKAFFAMHDLDGNHVWDEEEVKMLFLKELDKMYKEGMPQNDLM 78
          L+EVW+E D +    FNPK FF +HD++ + V DE+E++ LF KEL+K+Y     ++D+ 
Sbjct: 1  LKEVWEELDGLDPNRFNPKTFFILHDINSDGVLDEQELEALFTKELEKVYDPKNEEDDMR 60

Query: 79 ERAEERQTVFTGLF 92
          E  EER  +   + 
Sbjct: 61 EMEEERLRMREHVM 74


>d2ax3a2 c.104.1.1 (A:1-211) Hypothetical protein TM0922,
          N-terminal domain {Thermotoga maritima [TaxId: 2336]}
          Length = 211

 Score = 26.0 bits (56), Expect = 0.84
 Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 2/22 (9%)

Query: 62 KELDK--MYKEGMPQNDLMERA 81
          KE+D+  + + G+    LMERA
Sbjct: 2  KEIDELTIKEYGVDSRILMERA 23


>d1jzta_ c.104.1.1 (A:) Hypothetical protein YNL200c (YNU0_YEAST)
          {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
          4932]}
          Length = 243

 Score = 25.9 bits (56), Expect = 0.88
 Identities = 9/23 (39%), Positives = 11/23 (47%), Gaps = 3/23 (13%)

Query: 62 KELDK--MYKE-GMPQNDLMERA 81
           E+DK  M  + G     LME A
Sbjct: 10 AEIDKELMGPQIGFTLQQLMELA 32


>gi|152988212|ref|YP_001348091.1|(1-96:96) muconolactone
          delta-isomerase [Pseudomonas aeruginosa PA7] 
          gi|150963370|gb|ABR85395.1| muconolactone
          delta-isomerase [Pseudomonas aeruginosa PA7]  E=1e-44
          s/c=1.89 id=85% cov=101%
          Length = 96

 Score = 24.7 bits (54), Expect = 1.5
 Identities = 7/28 (25%), Positives = 11/28 (39%), Gaps = 1/28 (3%)

Query: 58 MLFLKELDKMYKEGMPQNDLME-RAEER 84
          MLF  ++       M        +A+ER
Sbjct: 1  MLFHVKMTVKLPADMDPQRAERLKADER 28


>d1rroa_ a.39.1.4 (A:) Oncomodulin {Rat (Rattus norvegicus)
          [TaxId: 10116]}
          Length = 108

 Score = 24.1 bits (52), Expect = 2.2
 Identities = 8/42 (19%), Positives = 14/42 (33%)

Query: 37 KAFFAMHDLDGNHVWDEEEVKMLFLKELDKMYKEGMPQNDLM 78
          K  F   D D +   D +E+K    K      +    +   +
Sbjct: 44 KDIFRFIDNDQSGYLDGDELKYFLQKFQSDARELTESETKSL 85


>d1udza_ b.51.1.1 (A:) Isoleucyl-tRNA synthetase (IleRS) {Thermus
           thermophilus [TaxId: 274]}
          Length = 179

 Score = 23.0 bits (48), Expect = 7.7
 Identities = 5/50 (10%), Positives = 15/50 (30%)

Query: 21  EVWQEQDHMGNTEFNPKAFFAMHDLDGNHVWDEEEVKMLFLKELDKMYKE 70
           E  +          + +    +    G +  +     +  L+    ++KE
Sbjct: 128 ETARVYGLPLLKTVDEEGKLLVEPFKGLYFREANRAILRDLRGRGFLFKE 177


>d1jc2a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId:
          9031]}
          Length = 75

 Score = 22.2 bits (47), Expect = 8.7
 Identities = 9/47 (19%), Positives = 20/47 (42%)

Query: 26 QDHMGNTEFNPKAFFAMHDLDGNHVWDEEEVKMLFLKELDKMYKEGM 72
          +D  G +E      F + D + +   D EE+  +     + + +E +
Sbjct: 1  EDAKGKSEEELANCFRIFDKNADGFIDIEELGEILRATGEHVIEEDI 47


>d1pvaa_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId:
          8010]}
          Length = 109

 Score = 22.6 bits (48), Expect = 9.1
 Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 4/49 (8%)

Query: 28 HMGNTEFNPKAFFAMHDLDGNHVWDEEEVKMLFLKELDKMYKEGMPQND 76
              +  + K  F   D D +   +EEE+K +    L     +G    D
Sbjct: 35 LKAMSANDVKKVFKAIDADASGFIEEEELKFV----LKSFAADGRDLTD 79


>d2guma1 e.76.1.1 (A:111-725) Glycoprotein B {Human herpesvirus 1
           [TaxId: 10298]}
          Length = 615

 Score = 23.2 bits (50), Expect = 9.2
 Identities = 9/59 (15%), Positives = 20/59 (33%), Gaps = 11/59 (18%)

Query: 23  WQEQDHMGNTEFNPKAFFAMHDLDGNHVWDEEEVKMLFL-----------KELDKMYKE 70
           WQE D M  +E+     F+   +      +  E  +  +             +D+++  
Sbjct: 259 WQEVDEMLRSEYGGSFRFSSDAISTTFTTNLTEYPLSRVDLGDCIGKDARDAMDRIFAR 317


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.134    0.412 

Gapped
Lambda     K      H
   0.267   0.0576    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 392,024
Number of extensions: 16526
Number of successful extensions: 93
Number of sequences better than 10.0: 1
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 32
Length of query: 98
Length of database: 2,407,596
Length adjustment: 60
Effective length of query: 38
Effective length of database: 1,583,796
Effective search space: 60184248
Effective search space used: 60184248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.2 bits)