BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10341
(213 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A69|A Chain A, Structure Of Hdac3 Bound To Corepressor And Inositol
Tetraphosphate
pdb|4A69|B Chain B, Structure Of Hdac3 Bound To Corepressor And Inositol
Tetraphosphate
Length = 376
Score = 124 bits (311), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 64/149 (42%), Positives = 89/149 (59%), Gaps = 32/149 (21%)
Query: 3 TLSHDRLGQFSLTTKGHGECVKFVRDLNVPXXXXXXXXXXQFSLTTKGHGECVKFVRDXX 62
+L DRLG F+L+ +GHGECV++V+ N+P L G G
Sbjct: 260 SLGCDRLGCFNLSIRGHGECVEYVKSFNIPL------------LVLGGGG---------- 297
Query: 63 XXXXXXXXXXYTLRNVARCWTYETSLLVNEEISNDIPDSLYKDFFQPDYNLHPEFVHKHD 122
YT+RNVARCWTYETSLLV E IS ++P S Y ++F PD+ LHP+ + +
Sbjct: 298 ----------YTVRNVARCWTYETSLLVEEAISEELPYSEYFEYFAPDFTLHPDVSTRIE 347
Query: 123 NANSKQYLELITKTVYDNLKMVAFSPSVQ 151
N NS+QYL+ I +T+++NLKM+ +PSVQ
Sbjct: 348 NQNSRQYLDQIRQTIFENLKMLNHAPSVQ 376
>pdb|3MAX|A Chain A, Crystal Structure Of Human Hdac2 Complexed With An
N-(2-Amin Benzamide
pdb|3MAX|B Chain B, Crystal Structure Of Human Hdac2 Complexed With An
N-(2-Amin Benzamide
pdb|3MAX|C Chain C, Crystal Structure Of Human Hdac2 Complexed With An
N-(2-Amin Benzamide
Length = 367
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 64/101 (63%), Gaps = 1/101 (0%)
Query: 44 FSLTTKGHGECVKFVRDXXXXXXXXXXXXYTLRNVARCWTYETSLLVNEEISNDIPDSLY 103
F+LT KGH +CV+ V+ YT+RNVARCWTYET++ ++ EI N++P + Y
Sbjct: 268 FNLTVKGHAKCVEVVKTFNLPLLMLGGGGYTIRNVARCWTYETAVALDCEIPNELPYNDY 327
Query: 104 KDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMV 144
++F PD+ LH N N+ +Y+E I + +++NL+M+
Sbjct: 328 FEYFGPDFKLHIS-PSNMTNQNTPEYMEKIKQRLFENLRML 367
>pdb|3MZ4|A Chain A, Crystal Structure Of D101l Mn2+ Hdac8 Complexed With M344
pdb|3MZ4|B Chain B, Crystal Structure Of D101l Mn2+ Hdac8 Complexed With M344
pdb|3MZ6|A Chain A, Crystal Structure Of D101l Fe2+ Hdac8 Complexed With M344
pdb|3MZ7|A Chain A, Crystal Structure Of D101l Co2+ Hdac8 Complexed With M344
Length = 389
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 1/103 (0%)
Query: 44 FSLTTKGHGECVKFVRDXXXXXXXXXXXXYTLRNVARCWTYETSLLVNEEISNDIPDSLY 103
F++T G G+C+K++ Y L N ARCWTY T +++ + +S++IPD +
Sbjct: 277 FNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYLTGVILGKTLSSEIPDHEF 336
Query: 104 KDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMVAF 146
+ PDY L + D N ++ I + NLK V
Sbjct: 337 FTAYGPDYVLEITPSCRPDR-NEPHRIQQILNYIKGNLKHVVI 378
>pdb|3MZ3|A Chain A, Crystal Structure Of Co2+ Hdac8 Complexed With M344
pdb|3MZ3|B Chain B, Crystal Structure Of Co2+ Hdac8 Complexed With M344
pdb|3RQD|A Chain A, Ideal Thiolate-Zinc Coordination Geometry In Depsipeptide
Binding To Histone Deacetylase 8
pdb|3RQD|B Chain B, Ideal Thiolate-Zinc Coordination Geometry In Depsipeptide
Binding To Histone Deacetylase 8
Length = 389
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 1/103 (0%)
Query: 44 FSLTTKGHGECVKFVRDXXXXXXXXXXXXYTLRNVARCWTYETSLLVNEEISNDIPDSLY 103
F++T G G+C+K++ Y L N ARCWTY T +++ + +S++IPD +
Sbjct: 277 FNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYLTGVILGKTLSSEIPDHEF 336
Query: 104 KDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMVAF 146
+ PDY L + D N ++ I + NLK V
Sbjct: 337 FTAYGPDYVLEITPSCRPDR-NEPHRIQQILNYIKGNLKHVVI 378
>pdb|3EWF|A Chain A, Crystal Structure Analysis Of Human Hdac8 H143a Variant
Complexed With Substrate.
pdb|3EWF|B Chain B, Crystal Structure Analysis Of Human Hdac8 H143a Variant
Complexed With Substrate.
pdb|3EWF|C Chain C, Crystal Structure Analysis Of Human Hdac8 H143a Variant
Complexed With Substrate.
pdb|3EWF|D Chain D, Crystal Structure Analysis Of Human Hdac8 H143a Variant
Complexed With Substrate
Length = 388
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 1/103 (0%)
Query: 44 FSLTTKGHGECVKFVRDXXXXXXXXXXXXYTLRNVARCWTYETSLLVNEEISNDIPDSLY 103
F++T G G+C+K++ Y L N ARCWTY T +++ + +S++IPD +
Sbjct: 277 FNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYLTGVILGKTLSSEIPDHEF 336
Query: 104 KDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMVAF 146
+ PDY L + D N ++ I + NLK V
Sbjct: 337 FTAYGPDYVLEITPSCRPDR-NEPHRIQQILNYIKGNLKHVVI 378
>pdb|2V5X|A Chain A, Crystal Structure Of Hdac8-Inhibitor Complex
pdb|2V5X|B Chain B, Crystal Structure Of Hdac8-Inhibitor Complex
Length = 388
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 1/103 (0%)
Query: 44 FSLTTKGHGECVKFVRDXXXXXXXXXXXXYTLRNVARCWTYETSLLVNEEISNDIPDSLY 103
F++T G G+C+K++ Y L N ARCWTY T +++ + +S++IPD +
Sbjct: 277 FNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYLTGVILGKTLSSEIPDHEF 336
Query: 104 KDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMVAF 146
+ PDY L + D N ++ I + NLK V
Sbjct: 337 FTAYGPDYVLEITPSCRPDR-NEPHRIQQILNYIKGNLKHVVI 378
>pdb|3EW8|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101l Variant
Length = 388
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 1/103 (0%)
Query: 44 FSLTTKGHGECVKFVRDXXXXXXXXXXXXYTLRNVARCWTYETSLLVNEEISNDIPDSLY 103
F++T G G+C+K++ Y L N ARCWTY T +++ + +S++IPD +
Sbjct: 277 FNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYLTGVILGKTLSSEIPDHEF 336
Query: 104 KDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMVAF 146
+ PDY L + D N ++ I + NLK V
Sbjct: 337 FTAYGPDYVLEITPSCRPDR-NEPHRIQQILNYIKGNLKHVVI 378
>pdb|3F07|A Chain A, Crystal Structure Analysis Of Human Hdac8 Complexed With
Apha In A New Monoclinic Crystal Form
pdb|3F07|B Chain B, Crystal Structure Analysis Of Human Hdac8 Complexed With
Apha In A New Monoclinic Crystal Form
pdb|3F07|C Chain C, Crystal Structure Analysis Of Human Hdac8 Complexed With
Apha In A New Monoclinic Crystal Form
pdb|3F0R|A Chain A, Crystal Structure Analysis Of Human Hdac8 Complexed With
Trichostatin A In A New Monoclinic Crystal Form
pdb|3F0R|B Chain B, Crystal Structure Analysis Of Human Hdac8 Complexed With
Trichostatin A In A New Monoclinic Crystal Form
pdb|3F0R|C Chain C, Crystal Structure Analysis Of Human Hdac8 Complexed With
Trichostatin A In A New Monoclinic Crystal Form
Length = 388
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 1/103 (0%)
Query: 44 FSLTTKGHGECVKFVRDXXXXXXXXXXXXYTLRNVARCWTYETSLLVNEEISNDIPDSLY 103
F++T G G+C+K++ Y L N ARCWTY T +++ + +S++IPD +
Sbjct: 277 FNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYLTGVILGKTLSSEIPDHEF 336
Query: 104 KDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMVAF 146
+ PDY L + D N ++ I + NLK V
Sbjct: 337 FTAYGPDYVLEITPSCRPDR-NEPHRIQQILNYIKGNLKHVVI 378
>pdb|3F06|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101a Variant.
pdb|3F06|B Chain B, Crystal Structure Analysis Of Human Hdac8 D101a Variant
Length = 388
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 1/103 (0%)
Query: 44 FSLTTKGHGECVKFVRDXXXXXXXXXXXXYTLRNVARCWTYETSLLVNEEISNDIPDSLY 103
F++T G G+C+K++ Y L N ARCWTY T +++ + +S++IPD +
Sbjct: 277 FNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYLTGVILGKTLSSEIPDHEF 336
Query: 104 KDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMVAF 146
+ PDY L + D N ++ I + NLK V
Sbjct: 337 FTAYGPDYVLEITPSCRPDR-NEPHRIQQILNYIKGNLKHVVI 378
>pdb|3EZT|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101e Variant
pdb|3EZT|B Chain B, Crystal Structure Analysis Of Human Hdac8 D101e Variant
Length = 388
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 1/103 (0%)
Query: 44 FSLTTKGHGECVKFVRDXXXXXXXXXXXXYTLRNVARCWTYETSLLVNEEISNDIPDSLY 103
F++T G G+C+K++ Y L N ARCWTY T +++ + +S++IPD +
Sbjct: 277 FNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYLTGVILGKTLSSEIPDHEF 336
Query: 104 KDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMVAF 146
+ PDY L + D N ++ I + NLK V
Sbjct: 337 FTAYGPDYVLEITPSCRPDR-NEPHRIQQILNYIKGNLKHVVI 378
>pdb|3EZP|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101n Variant
pdb|3EZP|B Chain B, Crystal Structure Analysis Of Human Hdac8 D101n Variant
Length = 388
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 1/103 (0%)
Query: 44 FSLTTKGHGECVKFVRDXXXXXXXXXXXXYTLRNVARCWTYETSLLVNEEISNDIPDSLY 103
F++T G G+C+K++ Y L N ARCWTY T +++ + +S++IPD +
Sbjct: 277 FNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYLTGVILGKTLSSEIPDHEF 336
Query: 104 KDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMVAF 146
+ PDY L + D N ++ I + NLK V
Sbjct: 337 FTAYGPDYVLEITPSCRPDR-NEPHRIQQILNYIKGNLKHVVI 378
>pdb|1T64|A Chain A, Crystal Structure Of Human Hdac8 Complexed With
Trichostatin A
pdb|1T64|B Chain B, Crystal Structure Of Human Hdac8 Complexed With
Trichostatin A
pdb|1T67|A Chain A, Crystal Structure Of Human Hdac8 Complexed With Ms-344
pdb|1T69|A Chain A, Crystal Structure Of Human Hdac8 Complexed With Saha
pdb|1VKG|A Chain A, Crystal Structure Of Human Hdac8 Complexed With Cra-19156
pdb|1VKG|B Chain B, Crystal Structure Of Human Hdac8 Complexed With Cra-19156
pdb|1W22|A Chain A, Crystal Structure Of Inhibited Human Hdac8
pdb|1W22|B Chain B, Crystal Structure Of Inhibited Human Hdac8
Length = 377
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 1/101 (0%)
Query: 44 FSLTTKGHGECVKFVRDXXXXXXXXXXXXYTLRNVARCWTYETSLLVNEEISNDIPDSLY 103
F++T G G+C+K++ Y L N ARCWTY T +++ + +S++IPD +
Sbjct: 277 FNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYLTGVILGKTLSSEIPDHEF 336
Query: 104 KDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMV 144
+ PDY L + D N ++ I + NLK V
Sbjct: 337 FTAYGPDYVLEITPSCRPDR-NEPHRIQQILNYIKGNLKHV 376
>pdb|3SFF|A Chain A, Crystal Structure Of Human Hdac8 Inhibitor Complex, An
Amino Acid Derived Inhibitor
pdb|3SFH|A Chain A, Crystal Structure Of Human Hdac8 Inhibitor Complex, An
Amino Acid Derived Inhibitor
Length = 378
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 1/101 (0%)
Query: 44 FSLTTKGHGECVKFVRDXXXXXXXXXXXXYTLRNVARCWTYETSLLVNEEISNDIPDSLY 103
F++T G G+C+K++ Y L N ARCWTY T +++ + +S++IPD +
Sbjct: 278 FNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYLTGVILGKTLSSEIPDHEF 337
Query: 104 KDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMV 144
+ PDY L + D N ++ I + NLK V
Sbjct: 338 FTAYGPDYVLEITPSCRPDR-NEPHRIQQILNYIKGNLKHV 377
>pdb|2V5W|A Chain A, Crystal Structure Of Hdac8-Substrate Complex
pdb|2V5W|B Chain B, Crystal Structure Of Hdac8-Substrate Complex
Length = 388
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 1/103 (0%)
Query: 44 FSLTTKGHGECVKFVRDXXXXXXXXXXXXYTLRNVARCWTYETSLLVNEEISNDIPDSLY 103
F++T G G+C+K++ + L N ARCWTY T +++ + +S++IPD +
Sbjct: 277 FNMTPVGIGKCLKYILQWQLATLILGGGGFNLANTARCWTYLTGVILGKTLSSEIPDHEF 336
Query: 104 KDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMVAF 146
+ PDY L + D N ++ I + NLK V
Sbjct: 337 FTAYGPDYVLEITPSCRPDR-NEPHRIQQILNYIKGNLKHVVI 378
>pdb|3HA1|A Chain A, Alanine Racemase From Bacillus Anthracis (Ames)
pdb|3HA1|B Chain B, Alanine Racemase From Bacillus Anthracis (Ames)
Length = 397
Score = 30.4 bits (67), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Query: 86 TSLLVNEEISNDIPDSLYKDFFQ-----PDYNLHPEFVHKHDNANSKQYLELITKTVYDN 140
T +E+ D Y F + ++ + P+FVH ++A + ++ + V
Sbjct: 167 THFATADEVETSYFDKQYNTFLEQLSWLKEFGVDPKFVHTANSAATLRFQGITFNAVRIG 226
Query: 141 LKMVAFSPSVQMQDMI 156
+ M SPSV+++ +
Sbjct: 227 IAMYGLSPSVEIRPFL 242
>pdb|2VD8|A Chain A, The Crystal Structure Of Alanine Racemase From Bacillus
Anthracis (ba0252)
pdb|2VD8|B Chain B, The Crystal Structure Of Alanine Racemase From Bacillus
Anthracis (ba0252)
Length = 391
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 86 TSLLVNEEISNDIPDSLYKDFFQ-----PDYNLHPEFVHKHDNANSKQYLELITKTVYDN 140
T +E+ D Y F + ++ + P FVH ++A + ++ + V
Sbjct: 169 THFATADEVETSYFDXQYNTFLEQLSWLXEFGVDPXFVHTANSAATLRFQGITFNAVRIG 228
Query: 141 LKMVAFSPSVQMQDMI 156
+ M SPSV+++ +
Sbjct: 229 IAMYGLSPSVEIRPFL 244
>pdb|2VD9|A Chain A, The Crystal Structure Of Alanine Racemase From Bacillus
Anthracis (Ba0252) With Bound L-Ala-P
pdb|2VD9|B Chain B, The Crystal Structure Of Alanine Racemase From Bacillus
Anthracis (Ba0252) With Bound L-Ala-P
Length = 391
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 86 TSLLVNEEISNDIPDSLYKDFFQ-----PDYNLHPEFVHKHDNANSKQYLELITKTVYDN 140
T +E+ D Y F + ++ + P FVH ++A + ++ + V
Sbjct: 169 THFATADEVETSYFDXQYNTFLEQLSWLXEFGVDPXFVHTANSAATLRFQGITFNAVRIG 228
Query: 141 LKMVAFSPSVQMQDMI 156
+ M SPSV+++ +
Sbjct: 229 IAMYGLSPSVEIRPFL 244
>pdb|1WWI|A Chain A, Crystal Structure Of Ttk003001566 From Thermus
Thermophilus Hb8
pdb|1WWS|A Chain A, Crystal Structure Of Ttk003001566 From Thermus
Thermophilus Hb8
pdb|1WWS|B Chain B, Crystal Structure Of Ttk003001566 From Thermus
Thermophilus Hb8
pdb|1WWS|C Chain C, Crystal Structure Of Ttk003001566 From Thermus
Thermophilus Hb8
pdb|1WWS|D Chain D, Crystal Structure Of Ttk003001566 From Thermus
Thermophilus Hb8
pdb|1WWS|E Chain E, Crystal Structure Of Ttk003001566 From Thermus
Thermophilus Hb8
pdb|1WWS|F Chain F, Crystal Structure Of Ttk003001566 From Thermus
Thermophilus Hb8
pdb|1WWS|G Chain G, Crystal Structure Of Ttk003001566 From Thermus
Thermophilus Hb8
pdb|1WWS|H Chain H, Crystal Structure Of Ttk003001566 From Thermus
Thermophilus Hb8
Length = 148
Score = 26.9 bits (58), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 167 VLDEMDPDIKNPQLEEDKRVD 187
VL E+DP +KNPQ E +R +
Sbjct: 121 VLKELDPALKNPQTEHHERAE 141
>pdb|2INU|A Chain A, Crystal Structure Of Insulin Fructotransferase In The
Absence Of Substrate
pdb|2INU|B Chain B, Crystal Structure Of Insulin Fructotransferase In The
Absence Of Substrate
pdb|2INU|C Chain C, Crystal Structure Of Insulin Fructotransferase In The
Absence Of Substrate
pdb|2INV|A Chain A, Crystal Structure Of Insulin Fructotransferase In The
Presence Of Di- Fructose
pdb|2INV|B Chain B, Crystal Structure Of Insulin Fructotransferase In The
Presence Of Di- Fructose
pdb|2INV|C Chain C, Crystal Structure Of Insulin Fructotransferase In The
Presence Of Di- Fructose
Length = 410
Score = 26.9 bits (58), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 163 DIGAVLDEMDPDIKNPQLEEDKRVDPANEFYDGDND 198
DIGAV++++ DIK Q D R A GD D
Sbjct: 33 DIGAVINDIIADIKQRQTSPDARPGAAIIIPPGDYD 68
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,224,185
Number of Sequences: 62578
Number of extensions: 239463
Number of successful extensions: 490
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 456
Number of HSP's gapped (non-prelim): 36
length of query: 213
length of database: 14,973,337
effective HSP length: 95
effective length of query: 118
effective length of database: 9,028,427
effective search space: 1065354386
effective search space used: 1065354386
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)