BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10341
(213 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6P6W3|HDAC3_RAT Histone deacetylase 3 OS=Rattus norvegicus GN=Hdac3 PE=1 SV=1
Length = 428
Score = 179 bits (455), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 87/165 (52%), Positives = 119/165 (72%), Gaps = 4/165 (2%)
Query: 36 LGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGYTLRNVARCWTYETSLLVNEEIS 95
LG LG F+L+ +GHGECV++V+ N+PLLVLGGGGYT+RNVARCWTYETSLLV E IS
Sbjct: 261 LGCDRLGCFNLSIRGHGECVEYVKSFNIPLLVLGGGGYTVRNVARCWTYETSLLVEEAIS 320
Query: 96 NDIPDSLYKDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMVAFSPSVQMQDM 155
++P S Y ++F PD+ LHP+ + +N NS+QYL+ I +T+++NLKM+ +PSVQ+ D+
Sbjct: 321 EELPYSEYFEYFAPDFTLHPDVSTRIENQNSRQYLDQIRQTIFENLKMLNHAPSVQIHDV 380
Query: 156 IGDVFTRDIGAVLDEMDPDIKNPQLEEDKRVDPANEFYDGDNDQD 200
D+ T D DE D + + P+ E R + NEFYDGD+D D
Sbjct: 381 PADLLTYD---RTDEADAEERGPE-ENYSRPEAPNEFYDGDHDND 421
>sp|O15379|HDAC3_HUMAN Histone deacetylase 3 OS=Homo sapiens GN=HDAC3 PE=1 SV=2
Length = 428
Score = 179 bits (455), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 87/165 (52%), Positives = 119/165 (72%), Gaps = 4/165 (2%)
Query: 36 LGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGYTLRNVARCWTYETSLLVNEEIS 95
LG LG F+L+ +GHGECV++V+ N+PLLVLGGGGYT+RNVARCWTYETSLLV E IS
Sbjct: 261 LGCDRLGCFNLSIRGHGECVEYVKSFNIPLLVLGGGGYTVRNVARCWTYETSLLVEEAIS 320
Query: 96 NDIPDSLYKDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMVAFSPSVQMQDM 155
++P S Y ++F PD+ LHP+ + +N NS+QYL+ I +T+++NLKM+ +PSVQ+ D+
Sbjct: 321 EELPYSEYFEYFAPDFTLHPDVSTRIENQNSRQYLDQIRQTIFENLKMLNHAPSVQIHDV 380
Query: 156 IGDVFTRDIGAVLDEMDPDIKNPQLEEDKRVDPANEFYDGDNDQD 200
D+ T D DE D + + P+ E R + NEFYDGD+D D
Sbjct: 381 PADLLTYD---RTDEADAEERGPE-ENYSRPEAPNEFYDGDHDND 421
>sp|O88895|HDAC3_MOUSE Histone deacetylase 3 OS=Mus musculus GN=Hdac3 PE=1 SV=1
Length = 424
Score = 179 bits (455), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 87/165 (52%), Positives = 119/165 (72%), Gaps = 4/165 (2%)
Query: 36 LGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGYTLRNVARCWTYETSLLVNEEIS 95
LG LG F+L+ +GHGECV++V+ N+PLLVLGGGGYT+RNVARCWTYETSLLV E IS
Sbjct: 261 LGCDRLGCFNLSIRGHGECVEYVKSFNIPLLVLGGGGYTVRNVARCWTYETSLLVEEAIS 320
Query: 96 NDIPDSLYKDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMVAFSPSVQMQDM 155
++P S Y ++F PD+ LHP+ + +N NS+QYL+ I +T+++NLKM+ +PSVQ+ D+
Sbjct: 321 EELPYSEYFEYFAPDFTLHPDVSTRIENQNSRQYLDQIRQTIFENLKMLNHAPSVQIHDV 380
Query: 156 IGDVFTRDIGAVLDEMDPDIKNPQLEEDKRVDPANEFYDGDNDQD 200
D+ T D DE D + + P+ E R + NEFYDGD+D D
Sbjct: 381 PADLLTYD---RTDEADAEERGPE-ENYSRPEAPNEFYDGDHDND 421
>sp|P56520|HDAC3_CHICK Histone deacetylase 3 OS=Gallus gallus GN=HDAC3 PE=2 SV=1
Length = 428
Score = 179 bits (454), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 87/165 (52%), Positives = 121/165 (73%), Gaps = 4/165 (2%)
Query: 36 LGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGYTLRNVARCWTYETSLLVNEEIS 95
LG LG F+L+ +GHGECV++V+ N+PLLVLGGGGYT+RNVARCWTYETSLLV+E IS
Sbjct: 261 LGRDRLGCFNLSIRGHGECVEYVKSFNIPLLVLGGGGYTVRNVARCWTYETSLLVDEAIS 320
Query: 96 NDIPDSLYKDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMVAFSPSVQMQDM 155
++P S Y ++F PD+ LHP+ + +N NS+QYL+ I +T+++NLKM+ +PSVQ+ D+
Sbjct: 321 EELPYSEYFEYFAPDFTLHPDVSTRIENQNSRQYLDQIRQTIFENLKMLNHAPSVQIHDV 380
Query: 156 IGDVFTRDIGAVLDEMDPDIKNPQLEEDKRVDPANEFYDGDNDQD 200
D+ + D DE DP+ + + E R + ANEFYDGD+D D
Sbjct: 381 PSDLLSYD---RTDEPDPEERGSE-ENYSRPEAANEFYDGDHDND 421
>sp|Q803C3|HDAC3_DANRE Histone deacetylase 3 OS=Danio rerio GN=hdac3 PE=2 SV=1
Length = 428
Score = 178 bits (451), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 87/165 (52%), Positives = 121/165 (73%), Gaps = 4/165 (2%)
Query: 36 LGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGYTLRNVARCWTYETSLLVNEEIS 95
LG LG F+L+ +GHGECV+FV+ +PLLVLGGGGYT+RNVARCWT+ETSLLV E IS
Sbjct: 261 LGCDRLGCFNLSIRGHGECVEFVKGFKIPLLVLGGGGYTVRNVARCWTFETSLLVEESIS 320
Query: 96 NDIPDSLYKDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMVAFSPSVQMQDM 155
+++P S Y ++F PD+ LHP+ + +N NS+QYLE I +TV++NLKM+ +PSVQ++D+
Sbjct: 321 DELPYSEYFEYFAPDFTLHPDVSTRIENQNSRQYLEQIRQTVFENLKMLNHAPSVQIRDV 380
Query: 156 IGDVFTRDIGAVLDEMDPDIKNPQLEEDKRVDPANEFYDGDNDQD 200
D+ + + DE DP+ + + E R + ANEFYDGD+D D
Sbjct: 381 PSDLLSYERP---DEADPEERGSE-ENFSRPEAANEFYDGDHDHD 421
>sp|Q5RB76|HDAC3_PONAB Histone deacetylase 3 OS=Pongo abelii GN=HDAC3 PE=2 SV=1
Length = 428
Score = 177 bits (448), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 86/165 (52%), Positives = 119/165 (72%), Gaps = 4/165 (2%)
Query: 36 LGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGYTLRNVARCWTYETSLLVNEEIS 95
LG LG F+L+ +GHGECV++V+ N+PLLVLGGGGYT+RNVARCWTYETSLLV E IS
Sbjct: 261 LGCDRLGCFNLSIRGHGECVEYVKSFNIPLLVLGGGGYTVRNVARCWTYETSLLVEEAIS 320
Query: 96 NDIPDSLYKDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMVAFSPSVQMQDM 155
++P S Y ++F PD+ LHP+ + +N NS+QYL+ I +T+++NLKM+ +PSVQ++D+
Sbjct: 321 EELPYSEYFEYFAPDFTLHPDVSTRIENQNSRQYLDQIRQTIFENLKMLNHAPSVQIRDV 380
Query: 156 IGDVFTRDIGAVLDEMDPDIKNPQLEEDKRVDPANEFYDGDNDQD 200
+ T D DE D + + P+ E R + NEFYDGD+D D
Sbjct: 381 PAGLLTYD---RTDEADAEERGPE-ENYSRPEAPNEFYDGDHDND 421
>sp|Q4SFA0|HDAC3_TETNG Histone deacetylase 3 OS=Tetraodon nigroviridis GN=hdac3 PE=3 SV=1
Length = 428
Score = 177 bits (448), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 87/165 (52%), Positives = 119/165 (72%), Gaps = 4/165 (2%)
Query: 36 LGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGYTLRNVARCWTYETSLLVNEEIS 95
LG LG F+L+ +GHGECV+FV+ +PLLVLGGGGYT+RNVARCWT+ETSLL+ E IS
Sbjct: 261 LGCDRLGCFNLSIRGHGECVEFVKSFKIPLLVLGGGGYTVRNVARCWTFETSLLLEESIS 320
Query: 96 NDIPDSLYKDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMVAFSPSVQMQDM 155
+++P S Y ++F PD+ LHP+ + +N NS+QYLE I +TV++NLKM+ +PSVQ+ D+
Sbjct: 321 DELPYSEYFEYFAPDFTLHPDVSTRIENQNSRQYLEQIRQTVFENLKMLNHAPSVQIHDV 380
Query: 156 IGDVFTRDIGAVLDEMDPDIKNPQLEEDKRVDPANEFYDGDNDQD 200
D+ + DE DPD + + E R + ANEFYDGD+D D
Sbjct: 381 PSDMLNYERN---DEPDPDERGAE-ENYTRPEAANEFYDGDHDND 421
>sp|Q28DV3|HDAC3_XENTR Histone deacetylase 3 OS=Xenopus tropicalis GN=hdac3 PE=2 SV=1
Length = 428
Score = 176 bits (445), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 84/165 (50%), Positives = 121/165 (73%), Gaps = 4/165 (2%)
Query: 36 LGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGYTLRNVARCWTYETSLLVNEEIS 95
LG LG F+L+ +GHGECV++V+ N+PLLVLGGGGYT+RNVARCWTYETSLLV+E IS
Sbjct: 261 LGCDRLGCFNLSIRGHGECVQYVKSFNIPLLVLGGGGYTVRNVARCWTYETSLLVDETIS 320
Query: 96 NDIPDSLYKDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMVAFSPSVQMQDM 155
++P S Y ++F PD+ LHP+ + +N NS+QYL+ I +T+++NLKM+ +PSVQ+ D+
Sbjct: 321 EELPYSEYFEYFAPDFTLHPDVSTRIENQNSRQYLDQIRQTIFENLKMLNHAPSVQIHDV 380
Query: 156 IGDVFTRDIGAVLDEMDPDIKNPQLEEDKRVDPANEFYDGDNDQD 200
D+ + + DE DP+ + + + R + +NEFYDGD+D D
Sbjct: 381 PSDILSYE---RTDEPDPEERGSE-DNYSRPEASNEFYDGDHDND 421
>sp|Q6IRL9|HDAC3_XENLA Histone deacetylase 3 OS=Xenopus laevis GN=hdac3 PE=2 SV=2
Length = 428
Score = 173 bits (438), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 84/165 (50%), Positives = 120/165 (72%), Gaps = 4/165 (2%)
Query: 36 LGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGYTLRNVARCWTYETSLLVNEEIS 95
LG LG F+L+ +GHGECV++V+ N+PLLVLGGGGYT+RNVARCWTYETSLLV+E IS
Sbjct: 261 LGCDRLGCFNLSIRGHGECVQYVKSFNIPLLVLGGGGYTVRNVARCWTYETSLLVDETIS 320
Query: 96 NDIPDSLYKDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMVAFSPSVQMQDM 155
++P S Y ++F PD+ LHP+ + +N NS+QYL+ I +TV+++LKM+ +PSVQ+ D+
Sbjct: 321 EELPYSEYFEYFAPDFTLHPDVSTRIENQNSRQYLDQIRQTVFESLKMLNHAPSVQIHDV 380
Query: 156 IGDVFTRDIGAVLDEMDPDIKNPQLEEDKRVDPANEFYDGDNDQD 200
D+ + DE DP+ + + + R + +NEFYDGD+D D
Sbjct: 381 PSDILNYE---RTDEPDPEERGGE-DNYSRPEASNEFYDGDHDND 421
>sp|Q8H0W2|HDA9_ARATH Histone deacetylase 9 OS=Arabidopsis thaliana GN=HDA9 PE=2 SV=1
Length = 426
Score = 148 bits (373), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 73/161 (45%), Positives = 106/161 (65%), Gaps = 3/161 (1%)
Query: 41 LGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGYTLRNVARCWTYETSLLVNEEISNDIPD 100
LG F+L+ GH ECVKFV+ N+PLLV GGGGYT NVARCWT ET +L++ E+ N+IP+
Sbjct: 268 LGCFNLSIDGHAECVKFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTELPNEIPE 327
Query: 101 SLYKDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMVAFSPSVQMQDMIGDVF 160
+ Y +F PD++L H +N N+K Y+ I + +NL+ + +PSVQMQ++ D +
Sbjct: 328 NDYIKYFAPDFSLKIPGGHI-ENLNTKSYISSIKVQILENLRYIQHAPSVQMQEVPPDFY 386
Query: 161 TRDIGAVLDEMDPDIKNPQLEEDKRVDPANEFYDGDNDQDA 201
D DE +PD++ Q DK++ +E++DGDND DA
Sbjct: 387 IPDFDE--DEQNPDVRADQRSRDKQIQRDDEYFDGDNDNDA 425
>sp|Q55BW2|HDA12_DICDI Histone deacetylase B OS=Dictyostelium discoideum GN=hdaB PE=2 SV=1
Length = 422
Score = 142 bits (358), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 72/155 (46%), Positives = 104/155 (67%), Gaps = 11/155 (7%)
Query: 41 LGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGYTLRNVARCWTYETSLLVNEEISNDIPD 100
LG F+LT KGH ECV+FV+ N+P LVLGGGGYT+RNVARCWTYETS+ V+ E++N++P
Sbjct: 275 LGCFNLTIKGHAECVRFVKSFNIPTLVLGGGGYTVRNVARCWTYETSVCVDTEVNNELPY 334
Query: 101 SLYKDFFQPDYNLHPEFV---HKHDNANSKQYLELITKTVYDNLKMVAFSPSVQMQDMIG 157
+ Y F+ PD+ L P++ K++NAN+K YLE + + +NL+++ ++PSVQ+QD+
Sbjct: 335 NDYIQFYSPDFQLIPDYTGLPFKYENANTKSYLESLRIKILENLRILQWAPSVQIQDVPP 394
Query: 158 DVFTRDIGAVLDEMDPDIKNPQLEEDKRVDPANEF 192
D+ D + D D K DKR N+F
Sbjct: 395 DIMPIDF-----DRDEDSKE---NMDKRKKKHNDF 421
>sp|Q9LXN8|HDA17_ARATH Histone deacetylase 17 OS=Arabidopsis thaliana GN=HDA17 PE=2 SV=1
Length = 158
Score = 140 bits (354), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 70/158 (44%), Positives = 102/158 (64%), Gaps = 3/158 (1%)
Query: 44 FSLTTKGHGECVKFVRDLNVPLLVLGGGGYTLRNVARCWTYETSLLVNEEISNDIPDSLY 103
FS+ GH ECVKFV+ N+PLLV GGGGYT NVARCWT ET +L++ E+ N+I ++ Y
Sbjct: 3 FSMLFTGHAECVKFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTELPNEISENDY 62
Query: 104 KDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMVAFSPSVQMQDMIGDVFTRD 163
+F PD++L H +N N+K Y+ I + +NL+ + +PSVQMQ++ D + D
Sbjct: 63 IKYFAPDFSLKIPGGHI-ENLNTKSYISSIKVQILENLRYIQHAPSVQMQEVPPDFYIPD 121
Query: 164 IGAVLDEMDPDIKNPQLEEDKRVDPANEFYDGDNDQDA 201
DE +PD++ Q DK++ +E++DGDND DA
Sbjct: 122 FDE--DEQNPDVRVDQRSRDKQIQRDDEYFDGDNDNDA 157
>sp|O17695|HDA1_CAEEL Histone deacetylase 1 OS=Caenorhabditis elegans GN=hda-1 PE=1 SV=1
Length = 461
Score = 139 bits (351), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 73/167 (43%), Positives = 103/167 (61%), Gaps = 3/167 (1%)
Query: 36 LGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGYTLRNVARCWTYETSLLVNEEIS 95
L G LG F+LT KGHGEC +F R NVPL+++GGGGYT RNVARCWTYETS+ V++E+
Sbjct: 270 LNGDRLGPFNLTLKGHGECARFFRSYNVPLMMVGGGGYTPRNVARCWTYETSIAVDKEVP 329
Query: 96 NDIPDSLYKDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMVAFSPSVQMQDM 155
N++P + Y ++F P+Y LH E + N NS L + V NL+ + F PSVQM+ +
Sbjct: 330 NELPYNDYFEYFGPNYRLHIESSNAA-NENSSDMLAKLQTDVIANLEQLTFVPSVQMRPI 388
Query: 156 IGDVFT--RDIGAVLDEMDPDIKNPQLEEDKRVDPANEFYDGDNDQD 200
D + D + D+ +PD + P D + +FYDG+ + D
Sbjct: 389 PEDALSALNDDSLIADQANPDKRLPPQITDGMIQDDGDFYDGEREGD 435
>sp|Q94517|HDAC1_DROME Histone deacetylase Rpd3 OS=Drosophila melanogaster GN=Rpd3 PE=1
SV=2
Length = 521
Score = 139 bits (351), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 72/163 (44%), Positives = 110/163 (67%), Gaps = 2/163 (1%)
Query: 36 LGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGYTLRNVARCWTYETSLLVNEEIS 95
L G LG F+LT KGHG+CV+FV+ N+P L++GGGGYT+RNV+RCWTYETS+ + EI+
Sbjct: 264 LTGDRLGCFNLTVKGHGKCVEFVKKYNLPFLMVGGGGYTIRNVSRCWTYETSVALAVEIA 323
Query: 96 NDIPDSLYKDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMVAFSPSVQMQDM 155
N++P + Y ++F PD+ LH N N+ +YLE I +++NL+M+ +P VQ+Q +
Sbjct: 324 NELPYNDYFEYFGPDFKLHIS-PSNMTNQNTSEYLEKIKNRLFENLRMLPHAPGVQIQAI 382
Query: 156 IGDVFTRDIGAVLDEMDPDIKNPQLEEDKRVDPANEFYDGDND 198
D D D++D D + PQ ++DKR+ P NE+ D +++
Sbjct: 383 PEDAIN-DESDDEDKVDKDDRLPQSDKDKRIVPENEYSDSEDE 424
>sp|O13298|PHD1_SCHPO Histone deacetylase phd1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=phd1 PE=1 SV=1
Length = 434
Score = 134 bits (336), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 70/153 (45%), Positives = 97/153 (63%), Gaps = 8/153 (5%)
Query: 36 LGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGYTLRNVARCWTYETSLLVNEEIS 95
LG LG F+L+ HGECV+F R N+P+LV+GGGGYTLRNVAR W YETS+ VNE+I
Sbjct: 284 LGYDRLGVFNLSIHAHGECVRFTRSFNIPMLVVGGGGYTLRNVARAWCYETSICVNEQIP 343
Query: 96 NDIP-DSLYKDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMVAFSPSVQMQD 154
+++P ++LY +FF PDY LHP K +N N+ + LE + + L+ + +PSVQMQ
Sbjct: 344 SELPRETLYYEFFAPDYTLHPRLTTKIENKNTPKALEDLRIRALEQLRYLGGAPSVQMQQ 403
Query: 155 MIGDVFTRDIGAVLDEMDPDIKNPQLEEDKRVD 187
+ D+ L+E D + + L DK VD
Sbjct: 404 I-----PPDLTGHLEEEDERLNDEYL--DKAVD 429
>sp|P56517|HDAC1_CHICK Histone deacetylase 1 OS=Gallus gallus GN=HDAC1 PE=2 SV=1
Length = 480
Score = 130 bits (328), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 71/166 (42%), Positives = 105/166 (63%), Gaps = 8/166 (4%)
Query: 36 LGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGYTLRNVARCWTYETSLLVNEEIS 95
L G LG F+LT KGH +CV+FV+ N+P+L+LGGGGYT+RNVARCWTYET++ ++ EI
Sbjct: 266 LSGDRLGCFNLTIKGHAKCVEFVKSFNLPMLMLGGGGYTIRNVARCWTYETAVALDTEIP 325
Query: 96 NDIPDSLYKDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMVAFSPSVQMQDM 155
N++P + Y ++F PD+ LH N N+ +YLE I + +++NL+M+ +P VQMQ +
Sbjct: 326 NELPYNDYFEYFGPDFKLHIS-PSNMTNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQPI 384
Query: 156 IGDVFTRDIGAVLDEMDP---DIKNPQLEEDKRVDPANEFYDGDND 198
D D G +E I+N DKR+ EF D +++
Sbjct: 385 PEDAVQEDSGDEEEEDPEKRISIRN----SDKRISCDEEFSDSEDE 426
>sp|Q5RAG0|HDAC1_PONAB Histone deacetylase 1 OS=Pongo abelii GN=HDAC1 PE=2 SV=1
Length = 482
Score = 130 bits (328), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 60/124 (48%), Positives = 88/124 (70%), Gaps = 1/124 (0%)
Query: 36 LGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGYTLRNVARCWTYETSLLVNEEIS 95
L G LG F+LT KGH +CV+FV+ N+P+L+LGGGGYT+RNVARCWTYET++ ++ EI
Sbjct: 266 LSGDRLGCFNLTIKGHAKCVEFVKSFNLPMLMLGGGGYTIRNVARCWTYETAVALDTEIP 325
Query: 96 NDIPDSLYKDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMVAFSPSVQMQDM 155
N++P + Y ++F PD+ LH N N+ +YLE I + +++NL+M+ +P VQMQ +
Sbjct: 326 NELPYNDYFEYFGPDFKLHIS-PSNMTNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQAI 384
Query: 156 IGDV 159
D
Sbjct: 385 PEDA 388
>sp|Q13547|HDAC1_HUMAN Histone deacetylase 1 OS=Homo sapiens GN=HDAC1 PE=1 SV=1
Length = 482
Score = 130 bits (328), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 60/124 (48%), Positives = 88/124 (70%), Gaps = 1/124 (0%)
Query: 36 LGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGYTLRNVARCWTYETSLLVNEEIS 95
L G LG F+LT KGH +CV+FV+ N+P+L+LGGGGYT+RNVARCWTYET++ ++ EI
Sbjct: 266 LSGDRLGCFNLTIKGHAKCVEFVKSFNLPMLMLGGGGYTIRNVARCWTYETAVALDTEIP 325
Query: 96 NDIPDSLYKDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMVAFSPSVQMQDM 155
N++P + Y ++F PD+ LH N N+ +YLE I + +++NL+M+ +P VQMQ +
Sbjct: 326 NELPYNDYFEYFGPDFKLHIS-PSNMTNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQAI 384
Query: 156 IGDV 159
D
Sbjct: 385 PEDA 388
>sp|Q4QQW4|HDAC1_RAT Histone deacetylase 1 OS=Rattus norvegicus GN=Hdac1 PE=2 SV=1
Length = 482
Score = 130 bits (328), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 60/124 (48%), Positives = 88/124 (70%), Gaps = 1/124 (0%)
Query: 36 LGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGYTLRNVARCWTYETSLLVNEEIS 95
L G LG F+LT KGH +CV+FV+ N+P+L+LGGGGYT+RNVARCWTYET++ ++ EI
Sbjct: 266 LSGDRLGCFNLTIKGHAKCVEFVKSFNLPMLMLGGGGYTIRNVARCWTYETAVALDTEIP 325
Query: 96 NDIPDSLYKDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMVAFSPSVQMQDM 155
N++P + Y ++F PD+ LH N N+ +YLE I + +++NL+M+ +P VQMQ +
Sbjct: 326 NELPYNDYFEYFGPDFKLHIS-PSNMTNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQAI 384
Query: 156 IGDV 159
D
Sbjct: 385 PEDA 388
>sp|O09106|HDAC1_MOUSE Histone deacetylase 1 OS=Mus musculus GN=Hdac1 PE=1 SV=1
Length = 482
Score = 130 bits (327), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 60/124 (48%), Positives = 88/124 (70%), Gaps = 1/124 (0%)
Query: 36 LGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGYTLRNVARCWTYETSLLVNEEIS 95
L G LG F+LT KGH +CV+FV+ N+P+L+LGGGGYT+RNVARCWTYET++ ++ EI
Sbjct: 266 LSGDRLGCFNLTIKGHAKCVEFVKSFNLPMLMLGGGGYTIRNVARCWTYETAVALDTEIP 325
Query: 96 NDIPDSLYKDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMVAFSPSVQMQDM 155
N++P + Y ++F PD+ LH N N+ +YLE I + +++NL+M+ +P VQMQ +
Sbjct: 326 NELPYNDYFEYFGPDFKLHIS-PSNMTNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQAI 384
Query: 156 IGDV 159
D
Sbjct: 385 PEDA 388
>sp|Q32PJ8|HDAC1_BOVIN Histone deacetylase 1 OS=Bos taurus GN=HDAC1 PE=2 SV=1
Length = 482
Score = 130 bits (327), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 60/124 (48%), Positives = 88/124 (70%), Gaps = 1/124 (0%)
Query: 36 LGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGYTLRNVARCWTYETSLLVNEEIS 95
L G LG F+LT KGH +CV+FV+ N+P+L+LGGGGYT+RNVARCWTYET++ ++ EI
Sbjct: 266 LSGDRLGCFNLTIKGHAKCVEFVKSFNLPMLMLGGGGYTIRNVARCWTYETAVALDTEIP 325
Query: 96 NDIPDSLYKDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMVAFSPSVQMQDM 155
N++P + Y ++F PD+ LH N N+ +YLE I + +++NL+M+ +P VQMQ +
Sbjct: 326 NELPYNDYFEYFGPDFKLHIS-PSNMTNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQAI 384
Query: 156 IGDV 159
D
Sbjct: 385 PEDA 388
>sp|O42227|HDA1B_XENLA Probable histone deacetylase 1-B OS=Xenopus laevis GN=hdac1-b PE=1
SV=1
Length = 480
Score = 130 bits (326), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 58/120 (48%), Positives = 87/120 (72%), Gaps = 1/120 (0%)
Query: 36 LGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGYTLRNVARCWTYETSLLVNEEIS 95
L G LG F+LT KGH +CV+F++ N+P+L+LGGGGYT+RNVARCWTYET++ ++ EI
Sbjct: 266 LSGDRLGCFNLTIKGHAKCVEFIKTFNLPMLMLGGGGYTIRNVARCWTYETAVALDSEIP 325
Query: 96 NDIPDSLYKDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMVAFSPSVQMQDM 155
N++P + Y ++F PD+ LH N N+ +YLE I + +++NL+M+ +P VQMQ +
Sbjct: 326 NELPYNDYFEYFGPDFKLHIS-PSNMTNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQAI 384
>sp|O59702|CLR6_SCHPO Histone deacetylase clr6 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=clr6 PE=1 SV=1
Length = 405
Score = 124 bits (310), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 58/123 (47%), Positives = 84/123 (68%), Gaps = 1/123 (0%)
Query: 36 LGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGYTLRNVARCWTYETSLLVNEEIS 95
L G LG F+L+ KGH CV FV+ N+P++ +GGGGYT+RNVAR WTYET LL EE+
Sbjct: 263 LAGDRLGCFNLSMKGHSMCVDFVKSFNLPMICVGGGGYTVRNVARVWTYETGLLAGEELD 322
Query: 96 NDIPDSLYKDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMVAFSPSVQMQDM 155
++P + Y ++ PDY L+ + +N N++QYL+ IT + +NL+ ++F+PSVQM
Sbjct: 323 ENLPYNDYLQYYGPDYKLNV-LSNNMENHNTRQYLDSITSEIIENLRNLSFAPSVQMHKT 381
Query: 156 IGD 158
GD
Sbjct: 382 PGD 384
>sp|Q55FN5|HDA11_DICDI Type-1 histone deacetylase 1 OS=Dictyostelium discoideum GN=hdaA
PE=2 SV=1
Length = 495
Score = 123 bits (308), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 65/163 (39%), Positives = 105/163 (64%), Gaps = 3/163 (1%)
Query: 36 LGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGYTLRNVARCWTYETSLLVNEEIS 95
L G LG F+LT +GH +C++F++ NVPL+VLGGGGYT++NVARCWTYETS+LV+ E+
Sbjct: 261 LTGDRLGCFNLTLRGHAQCIEFLKSFNVPLVVLGGGGYTIKNVARCWTYETSILVDSELK 320
Query: 96 NDIPDSLYKDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMVAFSPSVQMQDM 155
+++P + Y +++ P+Y LH + +N N+K YLE + + +NL+ + +P+ D+
Sbjct: 321 DELPYNDYLEYYGPEYRLHIT-PNNMENQNTKDYLEKLKIQLLENLRNLNHAPAAAHHDI 379
Query: 156 IGDVFTRDIGAVLDEMDPDIKNPQLEEDKRVDPANEFYDGDND 198
D F + D+ DPD++ + + DK+V E D D +
Sbjct: 380 PPDSF--NYSDDEDDEDPDVRISEADRDKKVHHQGELSDSDEE 420
>sp|Q9FML2|HDA6_ARATH Histone deacetylase 6 OS=Arabidopsis thaliana GN=HDA6 PE=1 SV=1
Length = 471
Score = 121 bits (304), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/165 (40%), Positives = 97/165 (58%), Gaps = 10/165 (6%)
Query: 36 LGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGYTLRNVARCWTYETSLLVNEEIS 95
L G LG F+L+ KGH +C++F+R NVPL+VLGGGGYT+RNVARCW YET++ V E
Sbjct: 278 LSGDRLGCFNLSVKGHADCLRFLRSYNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPD 337
Query: 96 NDIPDSLYKDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMVAFSPSVQMQDM 155
N +P + Y ++F PDY LH + +N N+ + +E I T+ + L + +PSVQ Q
Sbjct: 338 NKLPYNEYFEYFGPDYTLHVD-PSPMENLNTPKDMERIRNTLLEQLSGLIHAPSVQFQ-- 394
Query: 156 IGDVFTRDIGAVLDEMDPDIKNPQLEEDKRVDPANEFYDGDNDQD 200
T + VLDE + D+ + R+ Y+ D+D D
Sbjct: 395 ----HTPPVNRVLDEPEDDM---ETRPKPRIWSGTATYESDSDDD 432
>sp|P53096|HOS2_YEAST Probable histone deacetylase HOS2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=HOS2 PE=1 SV=1
Length = 452
Score = 121 bits (303), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 66/158 (41%), Positives = 99/158 (62%), Gaps = 5/158 (3%)
Query: 36 LGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGYTLRNVARCWTYETSLLVNEEIS 95
LG LG F+L K HGECVKFV+ +P+LV+GGGGYT RNV+R WTYET +L + +
Sbjct: 285 LGHDRLGCFNLNIKAHGECVKFVKSFGLPMLVVGGGGYTPRNVSRLWTYETGILNDVLLP 344
Query: 96 NDIPDSL-YKDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMVAFSPSVQMQD 154
DIP+ + ++D F PDY+L+P ++N NSK+ LE I +N++ + +PSV+M
Sbjct: 345 EDIPEDIPFRDSFGPDYSLYPMLDDLYENKNSKKLLEDIRIRCLENIRYLQGAPSVRMDA 404
Query: 155 MIGDVFTRDIGAVLDEMDPDIKNPQLEEDKRVDPANEF 192
+ T+DI A+ +E D I+ ++ E+ D +N
Sbjct: 405 EC--IPTQDISALTEEEDKIIQ--EMNEETEADSSNRL 438
>sp|P56518|HDAC1_STRPU Histone deacetylase 1 OS=Strongylocentrotus purpuratus GN=HDAC1
PE=2 SV=1
Length = 576
Score = 121 bits (303), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 69/163 (42%), Positives = 106/163 (65%), Gaps = 1/163 (0%)
Query: 36 LGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGYTLRNVARCWTYETSLLVNEEIS 95
L G LG F+LT KGH +CV+F++ N+PLL++GGGGYT+RNVARCWTYETS + EI+
Sbjct: 265 LSGDRLGCFNLTLKGHAKCVEFMKQYNLPLLLMGGGGYTIRNVARCWTYETSTALGVEIA 324
Query: 96 NDIPDSLYKDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMVAFSPSVQMQDM 155
N++P + Y ++F PD+ LH N N+ +YL+ I +Y+N++M+ +P VQMQ +
Sbjct: 325 NELPYNDYFEYFGPDFKLHIS-PSNMTNQNTGEYLDKIKTRLYENMRMIPHAPGVQMQPI 383
Query: 156 IGDVFTRDIGAVLDEMDPDIKNPQLEEDKRVDPANEFYDGDND 198
D D A + +PD + + +DKR+ +EF D +++
Sbjct: 384 PEDAIPDDSDAEDEAENPDKRISIMAQDKRIQRDDEFSDSEDE 426
>sp|Q9FH09|HDA7_ARATH Histone deacetylase 7 OS=Arabidopsis thaliana GN=HDA7 PE=2 SV=1
Length = 409
Score = 119 bits (299), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 81/119 (68%), Gaps = 1/119 (0%)
Query: 36 LGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGYTLRNVARCWTYETSLLVNEEIS 95
L G G F+L+ KGHG+C+++VR NVPL++LGGGGYTL NVARCW YET++ V E++
Sbjct: 269 LAGDPFGTFNLSIKGHGDCLQYVRSFNVPLMILGGGGYTLPNVARCWCYETAIAVGEQLD 328
Query: 96 NDIPDSLYKDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMVAFSPSVQMQD 154
ND+P + Y +F+PDY LH ++ N N++ + + +T+ L +V +PSV QD
Sbjct: 329 NDLPGNDYMKYFRPDYKLHILPTNRQ-NLNTRLDIITMRETLLAQLSLVMHAPSVPFQD 386
>sp|Q09440|HDA2_CAEEL Putative histone deacetylase 2 OS=Caenorhabditis elegans GN=hda-2
PE=3 SV=1
Length = 507
Score = 117 bits (293), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 64/152 (42%), Positives = 93/152 (61%), Gaps = 16/152 (10%)
Query: 41 LGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGYTLRNVARCWTYETSLLVNEEISNDIP- 99
LGQF+L+ H VK+V+ L PL+VLGGGGYTLRNVARCW ET +++ + ++IP
Sbjct: 292 LGQFALSFNAHARAVKYVKSLGKPLMVLGGGGYTLRNVARCWALETGVILGLRMDDEIPG 351
Query: 100 DSLYKDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMVAFSPSVQMQDMIGDV 159
SLY +F P L P V K ++ANS YL I K L+M+ +PSVQMQ++
Sbjct: 352 TSLYSHYFTPRL-LRPNLVPKMNDANSAAYLASIEKETLACLRMIRGAPSVQMQNI---- 406
Query: 160 FTRDIGAVLDEMDPDIKNPQLEEDKRVDPANE 191
+G LDE++ Q+EE++R+ +++
Sbjct: 407 ----VGIRLDEIE------QIEENERLQKSSK 428
>sp|P56519|HDAC2_CHICK Histone deacetylase 2 OS=Gallus gallus GN=HDAC2 PE=2 SV=1
Length = 488
Score = 115 bits (289), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 104/163 (63%), Gaps = 2/163 (1%)
Query: 36 LGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGYTLRNVARCWTYETSLLVNEEIS 95
L G LG F+LT KGH +CV+ V+ N+PLL+LGGGGYT+RNVARCWTYET++ ++ EI
Sbjct: 267 LSGDRLGCFNLTVKGHAKCVEVVKTFNLPLLMLGGGGYTIRNVARCWTYETAVALDCEIP 326
Query: 96 NDIPDSLYKDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMVAFSPSVQMQDM 155
N++P + Y ++F PD+ LH N N+ +Y+E I + +++NL+M+ +P VQMQ +
Sbjct: 327 NELPYNDYFEYFGPDFKLHIS-PSNMTNQNTPEYMEKIKQRLFENLRMLPHAPGVQMQAI 385
Query: 156 IGDVFTRDIGAVLDEMDPDIKNPQLEEDKRVDPANEFYDGDND 198
D D G D DPD + DKR+ EF D +++
Sbjct: 386 PEDAVHEDSGDE-DGEDPDKRISIRASDKRIACDEEFSDSEDE 427
>sp|Q92769|HDAC2_HUMAN Histone deacetylase 2 OS=Homo sapiens GN=HDAC2 PE=1 SV=2
Length = 488
Score = 115 bits (288), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 104/163 (63%), Gaps = 2/163 (1%)
Query: 36 LGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGYTLRNVARCWTYETSLLVNEEIS 95
L G LG F+LT KGH +CV+ V+ N+PLL+LGGGGYT+RNVARCWTYET++ ++ EI
Sbjct: 267 LSGDRLGCFNLTVKGHAKCVEVVKTFNLPLLMLGGGGYTIRNVARCWTYETAVALDCEIP 326
Query: 96 NDIPDSLYKDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMVAFSPSVQMQDM 155
N++P + Y ++F PD+ LH N N+ +Y+E I + +++NL+M+ +P VQMQ +
Sbjct: 327 NELPYNDYFEYFGPDFKLHIS-PSNMTNQNTPEYMEKIKQRLFENLRMLPHAPGVQMQAI 385
Query: 156 IGDVFTRDIGAVLDEMDPDIKNPQLEEDKRVDPANEFYDGDND 198
D D G D DPD + DKR+ EF D +++
Sbjct: 386 PEDAVHEDSGDE-DGEDPDKRISIRASDKRIACDEEFSDSEDE 427
>sp|P70288|HDAC2_MOUSE Histone deacetylase 2 OS=Mus musculus GN=Hdac2 PE=1 SV=1
Length = 488
Score = 114 bits (284), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 70/163 (42%), Positives = 103/163 (63%), Gaps = 2/163 (1%)
Query: 36 LGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGYTLRNVARCWTYETSLLVNEEIS 95
L G LG F+LT KGH +CV+ + N+PLL+LGGGGYT+RNVARCWTYET++ ++ EI
Sbjct: 267 LSGDRLGCFNLTVKGHAKCVEVAKTFNLPLLMLGGGGYTIRNVARCWTYETAVALDCEIP 326
Query: 96 NDIPDSLYKDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMVAFSPSVQMQDM 155
N++P + Y ++F PD+ LH N N+ +Y+E I + +++NL+M+ +P VQMQ +
Sbjct: 327 NELPYNDYFEYFGPDFKLHIS-PSNMTNQNTPEYMEKIKQRLFENLRMLPHAPGVQMQAI 385
Query: 156 IGDVFTRDIGAVLDEMDPDIKNPQLEEDKRVDPANEFYDGDND 198
D D G D DPD + DKR+ EF D +++
Sbjct: 386 PEDAVHEDSGDE-DGEDPDKRISIRASDKRIACDEEFSDSEDE 427
>sp|Q9M1N8|HDA10_ARATH Putative histone deacetylase 10 OS=Arabidopsis thaliana GN=HDA10
PE=3 SV=1
Length = 142
Score = 110 bits (274), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 90/158 (56%), Gaps = 19/158 (12%)
Query: 44 FSLTTKGHGECVKFVRDLNVPLLVLGGGGYTLRNVARCWTYETSLLVNEEISNDIPDSLY 103
FS+ GH EC GGYT NVARCWT ET +L++ E+ N+IP++ Y
Sbjct: 3 FSMLFTGHAEC----------------GGYTKENVARCWTVETGILLDTELPNEIPENDY 46
Query: 104 KDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMVAFSPSVQMQDMIGDVFTRD 163
+F PD++L H +N N+K Y+ I + +NL+ + +PSVQMQ++ D + D
Sbjct: 47 IKYFAPDFSLKIPGGHI-ENLNTKSYISSIKVQILENLRYIQHAPSVQMQEVPPDFYIPD 105
Query: 164 IGAVLDEMDPDIKNPQLEEDKRVDPANEFYDGDNDQDA 201
DE +PD++ Q DK++ +E++DGDND DA
Sbjct: 106 FDE--DEQNPDVRVDQRSRDKQIQRDDEYFDGDNDNDA 141
>sp|Q91695|HDA1A_XENLA Probable histone deacetylase 1-A OS=Xenopus laevis GN=hdac1-a PE=1
SV=1
Length = 480
Score = 109 bits (273), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/123 (48%), Positives = 88/123 (71%), Gaps = 1/123 (0%)
Query: 36 LGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGYTLRNVARCWTYETSLLVNEEIS 95
L G LG F+LT KGH +CV+F++ N+PLL+LGGGGYT+RNVARCWTYET++ ++ EI
Sbjct: 266 LSGDRLGCFNLTIKGHAKCVEFIKTFNLPLLMLGGGGYTIRNVARCWTYETAVALDSEIP 325
Query: 96 NDIPDSLYKDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMVAFSPSVQMQDM 155
N++P + Y ++F PD+ LH N N+ +YLE I + +++NL+M+ +P VQMQ +
Sbjct: 326 NELPYNDYFEYFGPDFKLHIS-PSNMTNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQAV 384
Query: 156 IGD 158
D
Sbjct: 385 AED 387
>sp|O22446|HDA19_ARATH Histone deacetylase 19 OS=Arabidopsis thaliana GN=HDA19 PE=1 SV=2
Length = 501
Score = 108 bits (269), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 88/149 (59%), Gaps = 17/149 (11%)
Query: 36 LGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGYTLRNVARCWTYETSLLVNEEIS 95
L G LG F+L+ KGH ECVKF+R NVPLL+LGGGGYT+RNVARCW YET + + E+
Sbjct: 274 LSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVE 333
Query: 96 NDIPDSLYKDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMVAFSPSVQMQDM 155
+ +P+ Y ++F PDY LH +N NS+Q LE I + NL + +PSV Q
Sbjct: 334 DKMPEHEYYEYFGPDYTLHVA-PSNMENKNSRQMLEEIRNDLLHNLSKLQHAPSVPFQ-- 390
Query: 156 IGDVFTRDIGAVLDEMDPDIKNPQLEEDK 184
E PD + P+++ED+
Sbjct: 391 --------------ERPPDTETPEVDEDQ 405
>sp|P32561|RPD3_YEAST Histone deacetylase RPD3 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPD3 PE=1 SV=1
Length = 433
Score = 108 bits (269), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 93/162 (57%), Gaps = 8/162 (4%)
Query: 36 LGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGYTLRNVARCWTYETSLLVNEEIS 95
L G LG F+L+ +GH CV +V+ +P++V+GGGGYT+RNVAR W +ET LL N +
Sbjct: 276 LSGDRLGCFNLSMEGHANCVNYVKSFGIPMMVVGGGGYTMRNVARTWCFETGLLNNVVLD 335
Query: 96 NDIPDSLYKDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMVAFSPSVQMQDM 155
D+P + Y +++ PDY L + N N+ +YL+ + ++ NL+ ++PSVQ+
Sbjct: 336 KDLPYNEYYEYYGPDYKLSVRPSNMF-NVNTPEYLDKVMTNIFANLENTKYAPSVQLNHT 394
Query: 156 IGDVFTRDIGAVLDEMDPDIKN----PQLEEDKRVDPANEFY 193
D D+G V +E + K+ Q D V+ NEFY
Sbjct: 395 PRD--AEDLGDV-EEDSAEAKDTKGGSQYARDLHVEHDNEFY 433
>sp|P56521|HDA19_MAIZE Probable histone deacetylase 19 OS=Zea mays PE=2 SV=1
Length = 513
Score = 94.4 bits (233), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/126 (44%), Positives = 80/126 (63%), Gaps = 9/126 (7%)
Query: 36 LGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGYTLRNVARCWTYETSLLVNEEIS 95
L G LG F+L+ KGH ECV+++R NVPLL+LGGGGYT+RNVARCW YET + + +E
Sbjct: 279 LSGDRLGCFNLSIKGHAECVRYMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGQEPE 338
Query: 96 NDIPDSLYKDFFQPDYNLH--PEFVHKHDNANSKQYLELITKTVYDNLKMVAFSPSVQMQ 153
+ +P + Y ++F PDY LH P + +N N++Q L+ I L + +PSV Q
Sbjct: 339 DKMPVNEYYEYFGPDYTLHVAPSNM---ENKNTRQQLDDIRS----KLSKLRHAPSVHFQ 391
Query: 154 DMIGDV 159
+ + D
Sbjct: 392 ERVPDT 397
>sp|Q6GPA7|HDAC8_XENLA Histone deacetylase 8 OS=Xenopus laevis GN=hdac8 PE=2 SV=1
Length = 325
Score = 84.0 bits (206), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 66/109 (60%), Gaps = 1/109 (0%)
Query: 36 LGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGYTLRNVARCWTYETSLLVNEEIS 95
+ G + F++T +G G+C+K+V +P L+LGGGGY L N ARCWTY T+L+V +S
Sbjct: 217 IAGDPMCSFNMTPEGIGKCLKYVLQWQLPTLILGGGGYHLPNTARCWTYLTALIVGRTLS 276
Query: 96 NDIPDSLYKDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMV 144
++IPD + + PDY L + D N Q ++ I +++ NLK V
Sbjct: 277 SEIPDHEFFTEYGPDYVLEITPSCRPDR-NDTQKVQEILQSIKGNLKRV 324
>sp|B1H369|HDAC8_XENTR Histone deacetylase 8 OS=Xenopus tropicalis GN=hdac8 PE=2 SV=1
Length = 369
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 66/109 (60%), Gaps = 1/109 (0%)
Query: 36 LGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGYTLRNVARCWTYETSLLVNEEIS 95
+ G + F++T +G G+C+K+V +P L+LGGGGY L N ARCWTY T+L+V +S
Sbjct: 261 IAGDPMCSFNMTPQGIGKCLKYVLQWQLPTLILGGGGYHLPNTARCWTYLTALIVGRTLS 320
Query: 96 NDIPDSLYKDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMV 144
++IPD + + PDY L + D N Q ++ I +++ +LK V
Sbjct: 321 SEIPDHEFFTEYGPDYVLEVTPSCRPDR-NDSQKVQEILQSIKGHLKQV 368
>sp|Q8VH37|HDAC8_MOUSE Histone deacetylase 8 OS=Mus musculus GN=Hdac8 PE=1 SV=2
Length = 377
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 61/109 (55%), Gaps = 1/109 (0%)
Query: 36 LGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGYTLRNVARCWTYETSLLVNEEIS 95
+ G + F++T G G+C+K+V + L+LGGGGY L N ARCWTY T +++ + +S
Sbjct: 269 IAGDPMCSFNMTPVGIGKCLKYVLQWQLATLILGGGGYNLANTARCWTYLTGVILGKTLS 328
Query: 96 NDIPDSLYKDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMV 144
++IPD + + PDY L + D N ++ I + NLK V
Sbjct: 329 SEIPDHEFFTAYGPDYVLEITPSCRPDR-NEPHRIQQILNYIKGNLKHV 376
>sp|B1WC68|HDAC8_RAT Histone deacetylase 8 OS=Rattus norvegicus GN=Hdac8 PE=2 SV=1
Length = 377
Score = 75.5 bits (184), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 61/109 (55%), Gaps = 1/109 (0%)
Query: 36 LGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGYTLRNVARCWTYETSLLVNEEIS 95
+ G + F++T G G+C+K+V + L+LGGGGY L N ARCWTY T +++ + +S
Sbjct: 269 IAGDPMCSFNMTPVGIGKCLKYVLQWQLATLILGGGGYNLANTARCWTYLTGVILGKTLS 328
Query: 96 NDIPDSLYKDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMV 144
++IPD + + PDY L + D N ++ I + NLK V
Sbjct: 329 SEIPDHEFFTAYGPDYVLEITPSCRPDR-NEPHRIQQILNYIKGNLKHV 376
>sp|Q9BY41|HDAC8_HUMAN Histone deacetylase 8 OS=Homo sapiens GN=HDAC8 PE=1 SV=2
Length = 377
Score = 75.1 bits (183), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 61/109 (55%), Gaps = 1/109 (0%)
Query: 36 LGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGYTLRNVARCWTYETSLLVNEEIS 95
+ G + F++T G G+C+K++ + L+LGGGGY L N ARCWTY T +++ + +S
Sbjct: 269 IAGDPMCSFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYLTGVILGKTLS 328
Query: 96 NDIPDSLYKDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMV 144
++IPD + + PDY L + D N ++ I + NLK V
Sbjct: 329 SEIPDHEFFTAYGPDYVLEITPSCRPDR-NEPHRIQQILNYIKGNLKHV 376
>sp|Q0VCB2|HDAC8_BOVIN Histone deacetylase 8 OS=Bos taurus GN=HDAC8 PE=2 SV=1
Length = 377
Score = 74.7 bits (182), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 61/109 (55%), Gaps = 1/109 (0%)
Query: 36 LGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGYTLRNVARCWTYETSLLVNEEIS 95
+ G + F++T G G+C+K++ + L+LGGGGY L N ARCWTY T +++ + +S
Sbjct: 269 IAGDPMCSFNMTPVGIGKCLKYILQWELATLILGGGGYNLANTARCWTYLTGVILGKTLS 328
Query: 96 NDIPDSLYKDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMV 144
++IPD + + PDY L + D N ++ I + NLK V
Sbjct: 329 SEIPDHEFFTAYGPDYVLEITPSCRPDR-NEPHRVQQILNYIKGNLKHV 376
>sp|Q7SXM0|HDAC8_DANRE Histone deacetylase 8 OS=Danio rerio GN=hdac8 PE=2 SV=1
Length = 378
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 63/109 (57%), Gaps = 1/109 (0%)
Query: 36 LGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGYTLRNVARCWTYETSLLVNEEIS 95
+ G + F++T G +C+ ++ +P L+LGGGGY L N ARCWTY T ++ + +S
Sbjct: 270 MAGDPMCSFNMTPVGVAKCLTYILGWELPTLLLGGGGYNLANTARCWTYLTGTVLGQTLS 329
Query: 96 NDIPDSLYKDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMV 144
++IPD + + PDY+L + D N Q+LE + T+ NLK V
Sbjct: 330 SEIPDHEFFTEYGPDYSLEISPSCRPDR-NESQHLERVISTIKGNLKNV 377
>sp|Q12493|NKP1_YEAST Central kinetochore subunit NKP1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NKP1 PE=1 SV=2
Length = 238
Score = 34.7 bits (78), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 32/56 (57%)
Query: 113 LHPEFVHKHDNANSKQYLELITKTVYDNLKMVAFSPSVQMQDMIGDVFTRDIGAVL 168
L + + K +A S+ +L++K +YDN + S S Q+ +++GD+ +G+ L
Sbjct: 42 LKAQVIEKRKDAMSRGKQDLLSKEIYDNESELRASQSQQIMELVGDIPKYSLGSEL 97
>sp|Q54JE4|ODO1_DICDI 2-oxoglutarate dehydrogenase, mitochondrial OS=Dictyostelium
discoideum GN=ogdh PE=3 SV=1
Length = 1013
Score = 33.5 bits (75), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 38/88 (43%), Gaps = 9/88 (10%)
Query: 59 RDLNVPLLVLGGGGYTLRNVARCWTYETSLLVNEEISNDIPDSLYKDFFQPDYNLHPEFV 118
RD PL V+ Y LR YE S +E SND LY + F PD PE +
Sbjct: 838 RDFRKPL-VIATPKYLLR-------YEKSFSTAKEFSNDSFTRLYPEAF-PDQINKPEKI 888
Query: 119 HKHDNANSKQYLELITKTVYDNLKMVAF 146
++ + Y LI +N+K VA
Sbjct: 889 NRIVFCTGQVYYNLIASRESNNIKDVAI 916
>sp|Q9T0N8|CKX1_MAIZE Cytokinin dehydrogenase 1 OS=Zea mays GN=CKX1 PE=1 SV=2
Length = 534
Score = 32.3 bits (72), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 43/104 (41%), Gaps = 25/104 (24%)
Query: 18 GHGECVKFVRDLNVPLLVLGGGGLGQFSLTTK---------GHGECVKFV---------- 58
GHGE V + LN L GGLGQF + T+ V+FV
Sbjct: 206 GHGEMVTCSKQLNADLFDAVLGGLGQFGVITRARIAVEPAPARARWVRFVYTDFAAFSAD 265
Query: 59 -RDLNVPLLVLGGGGYTLRNVARCWTYETSLLVNEEISNDIPDS 101
L P GGGG + ++ E S+ VN+ ++ D+ ++
Sbjct: 266 QERLTAPR--PGGGGASFGPMSYV---EGSVFVNQSLATDLANT 304
>sp|G5E8K5|ANK3_MOUSE Ankyrin-3 OS=Mus musculus GN=Ank3 PE=1 SV=1
Length = 1961
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 18 GHGECVKFVRDLNVPLLVLGGGGLGQFSLTTKG-HGECVKFVRDLNVPL 65
GH + V+ + D + P+L GL + T+G H CV+ + NVP+
Sbjct: 295 GHEQVVEMLLDRSAPILSKTKNGLSPLHMATQGDHLNCVQLLLQHNVPV 343
>sp|Q9VWR8|DPY19_DROME Protein dpy-19 homolog OS=Drosophila melanogaster GN=CG6659 PE=1
SV=1
Length = 872
Score = 32.0 bits (71), Expect = 3.3, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 8/66 (12%)
Query: 92 EEISNDIPD-----SLYKDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMVAF 146
+E +N++ D +++ D QP Y +P+F H+ + N +L++ Y +KM F
Sbjct: 798 DECTNEVRDDCDLLAIWDDK-QPAYQKYPQFCHELLHKNVPSFLKVFANDHYGIIKM--F 854
Query: 147 SPSVQM 152
S SVQ+
Sbjct: 855 SQSVQI 860
>sp|Q12955|ANK3_HUMAN Ankyrin-3 OS=Homo sapiens GN=ANK3 PE=1 SV=3
Length = 4377
Score = 30.4 bits (67), Expect = 8.0, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Query: 18 GHGECVKFVRDLNVPLLVLGGGGLGQFSLTTKG-HGECVKFVRDLNVPLLVLGGGGYTLR 76
GH + V+ + D P+L GL + T+G H CV+ + NVP+ + T
Sbjct: 312 GHEQVVEMLLDRAAPILSKTKNGLSPLHMATQGDHLNCVQLLLQHNVPVDDVTNDYLTAL 371
Query: 77 NV-ARCWTYETSLLVNEEISNDIPDSLYKDFFQP 109
+V A C Y+ + ++ ++ +N P++ + F P
Sbjct: 372 HVAAHCGHYKVAKVLLDKKAN--PNAKALNGFTP 403
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.139 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,221,906
Number of Sequences: 539616
Number of extensions: 4005242
Number of successful extensions: 10434
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 10275
Number of HSP's gapped (non-prelim): 114
length of query: 213
length of database: 191,569,459
effective HSP length: 113
effective length of query: 100
effective length of database: 130,592,851
effective search space: 13059285100
effective search space used: 13059285100
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)