Query psy10341
Match_columns 213
No_of_seqs 205 out of 857
Neff 5.1
Searched_HMMs 46136
Date Fri Aug 16 15:30:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10341.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10341hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1342|consensus 100.0 2.1E-55 4.6E-60 402.4 11.6 186 11-199 222-425 (425)
2 PTZ00063 histone deacetylase; 100.0 6.8E-40 1.5E-44 307.2 12.2 152 11-163 220-391 (436)
3 PTZ00346 histone deacetylase; 99.9 2.9E-24 6.3E-29 201.4 11.1 134 11-145 238-398 (429)
4 KOG1342|consensus 99.6 5.8E-16 1.3E-20 143.2 8.6 108 3-139 264-375 (425)
5 COG0123 AcuC Deacetylases, inc 99.3 6.2E-12 1.3E-16 115.6 6.4 101 11-111 209-335 (340)
6 PF00850 Hist_deacetyl: Histon 99.1 3.8E-11 8.3E-16 108.3 3.8 79 11-89 210-310 (311)
7 PTZ00063 histone deacetylase; 98.7 2E-08 4.3E-13 95.4 7.3 124 3-152 262-389 (436)
8 PTZ00346 histone deacetylase; 98.7 3.5E-08 7.6E-13 93.5 7.5 109 3-138 280-395 (429)
9 KOG1344|consensus 95.6 0.018 3.9E-07 51.9 4.8 57 20-76 237-305 (324)
10 COG0123 AcuC Deacetylases, inc 94.9 0.038 8.2E-07 51.3 4.7 53 3-60 251-307 (340)
11 KOG1343|consensus 94.7 0.16 3.5E-06 52.1 8.9 74 23-96 681-762 (797)
12 PF00850 Hist_deacetyl: Histon 84.3 0.9 1.9E-05 41.2 3.0 55 3-60 252-308 (311)
13 COG0420 SbcD DNA repair exonuc 82.4 3.9 8.5E-05 37.7 6.5 65 20-87 30-97 (390)
14 cd00840 MPP_Mre11_N Mre11 nucl 80.9 5.8 0.00013 32.5 6.4 53 18-70 29-84 (223)
15 COG1654 BirA Biotin operon rep 65.4 4.3 9.4E-05 30.3 1.8 50 36-85 20-70 (79)
16 KOG1344|consensus 65.2 6.8 0.00015 35.6 3.2 37 4-40 261-302 (324)
17 COG0132 BioD Dethiobiotin synt 54.0 45 0.00097 29.4 6.4 52 21-76 127-178 (223)
18 cd07388 MPP_Tt1561 Thermus the 46.0 66 0.0014 28.1 6.2 50 20-70 21-70 (224)
19 TIGR00583 mre11 DNA repair pro 43.0 75 0.0016 30.3 6.5 43 18-60 30-72 (405)
20 cd07402 MPP_GpdQ Enterobacter 41.8 88 0.0019 26.0 6.2 51 18-70 26-78 (240)
21 PRK00945 acetyl-CoA decarbonyl 40.8 74 0.0016 27.0 5.5 47 20-70 25-71 (171)
22 PRK10966 exonuclease subunit S 40.7 98 0.0021 29.3 6.9 60 20-82 29-91 (407)
23 cd07396 MPP_Nbla03831 Homo sap 40.5 66 0.0014 28.0 5.4 54 17-70 27-81 (267)
24 COG1880 CdhB CO dehydrogenase/ 40.1 67 0.0014 27.4 5.0 46 20-70 25-71 (170)
25 TIGR00619 sbcd exonuclease Sbc 39.3 1E+02 0.0022 26.9 6.4 59 19-80 28-90 (253)
26 TIGR00315 cdhB CO dehydrogenas 39.0 77 0.0017 26.6 5.3 47 20-71 18-64 (162)
27 PRK05724 acetyl-CoA carboxylas 33.7 40 0.00086 31.4 3.0 47 20-68 141-195 (319)
28 TIGR00513 accA acetyl-CoA carb 33.0 52 0.0011 30.6 3.6 47 20-68 141-195 (316)
29 cd07399 MPP_YvnB Bacillus subt 32.3 1.2E+02 0.0026 25.6 5.6 50 20-70 25-77 (214)
30 PRK14027 quinate/shikimate deh 31.9 60 0.0013 29.2 3.8 72 9-85 63-145 (283)
31 PRK12319 acetyl-CoA carboxylas 31.4 61 0.0013 29.1 3.7 64 20-85 88-165 (256)
32 KOG3035|consensus 30.7 28 0.00061 31.2 1.4 45 32-76 7-51 (245)
33 cd02070 corrinoid_protein_B12- 29.3 1.8E+02 0.0038 24.4 6.1 52 20-75 123-177 (201)
34 PF09936 Methyltrn_RNA_4: SAM- 29.2 18 0.00039 31.3 -0.1 53 18-73 89-143 (185)
35 cd07392 MPP_PAE1087 Pyrobaculu 29.0 86 0.0019 24.7 3.9 43 25-70 18-60 (188)
36 cd07400 MPP_YydB Bacillus subt 29.0 1.8E+02 0.0039 22.2 5.6 48 21-70 26-76 (144)
37 PF13344 Hydrolase_6: Haloacid 28.3 1.1E+02 0.0023 23.0 4.2 25 15-39 15-39 (101)
38 PRK05583 ribosomal protein L7A 28.0 2E+02 0.0043 22.1 5.6 46 18-69 21-66 (104)
39 PF07981 Plasmod_MYXSPDY: Plas 26.8 24 0.00051 19.2 0.2 11 106-116 2-12 (17)
40 PRK11148 cyclic 3',5'-adenosin 26.8 2E+02 0.0044 25.0 6.2 50 19-70 42-93 (275)
41 TIGR00179 murB UDP-N-acetyleno 26.7 71 0.0015 28.7 3.3 25 47-71 21-45 (284)
42 cd07383 MPP_Dcr2 Saccharomyces 26.5 2E+02 0.0044 23.5 5.9 50 21-70 32-84 (199)
43 cd02006 TPP_Gcl Thiamine pyrop 26.4 77 0.0017 26.5 3.3 39 30-74 75-115 (202)
44 PRK14653 UDP-N-acetylenolpyruv 26.1 70 0.0015 29.2 3.2 24 47-71 42-65 (297)
45 PLN03229 acetyl-coenzyme A car 25.9 66 0.0014 33.4 3.2 67 20-87 232-311 (762)
46 PHA02546 47 endonuclease subun 25.8 2E+02 0.0044 26.2 6.2 53 18-70 27-84 (340)
47 PLN02564 6-phosphofructokinase 25.8 1.7E+02 0.0037 28.9 5.9 54 50-103 164-224 (484)
48 PF01467 CTP_transf_2: Cytidyl 25.4 45 0.00098 25.3 1.6 30 10-39 4-35 (157)
49 PLN03230 acetyl-coenzyme A car 25.3 82 0.0018 30.6 3.6 25 124-148 344-368 (431)
50 TIGR00507 aroE shikimate 5-deh 24.8 77 0.0017 27.7 3.2 64 9-72 54-127 (270)
51 COG3962 Acetolactate synthase 24.7 77 0.0017 31.7 3.3 25 48-72 216-240 (617)
52 PRK14649 UDP-N-acetylenolpyruv 24.6 80 0.0017 28.6 3.3 24 48-71 30-53 (295)
53 COG2047 Uncharacterized protei 24.6 74 0.0016 28.7 2.9 39 33-75 86-128 (258)
54 cd02013 TPP_Xsc_like Thiamine 24.6 82 0.0018 26.3 3.2 39 30-74 71-111 (196)
55 cd00838 MPP_superfamily metall 24.3 2.4E+02 0.0053 19.8 5.3 47 24-70 20-66 (131)
56 PRK00258 aroE shikimate 5-dehy 24.3 75 0.0016 28.0 3.0 66 9-74 59-135 (278)
57 PRK04531 acetylglutamate kinas 24.3 1.4E+02 0.0031 28.3 5.0 56 20-78 21-82 (398)
58 PRK14652 UDP-N-acetylenolpyruv 24.3 84 0.0018 28.6 3.4 25 47-71 44-68 (302)
59 PRK12436 UDP-N-acetylenolpyruv 23.9 86 0.0019 28.5 3.4 25 47-71 45-69 (305)
60 PRK12548 shikimate 5-dehydroge 23.7 79 0.0017 28.2 3.1 65 9-73 63-137 (289)
61 cd02067 B12-binding B12 bindin 23.6 3.2E+02 0.0069 20.4 6.1 51 20-74 40-92 (119)
62 cd02069 methionine_synthase_B1 23.4 2.2E+02 0.0049 24.4 5.7 52 20-75 129-181 (213)
63 COG2266 GTP:adenosylcobinamide 23.0 4.9E+02 0.011 22.4 8.7 98 18-142 73-171 (177)
64 PRK00046 murB UDP-N-acetylenol 22.9 87 0.0019 29.2 3.2 21 51-71 33-53 (334)
65 cd02002 TPP_BFDC Thiamine pyro 22.6 1.3E+02 0.0027 24.3 3.8 33 30-68 67-99 (178)
66 TIGR03637 cas1_YPEST CRISPR-as 22.6 1E+02 0.0022 28.3 3.6 33 34-74 47-79 (307)
67 PRK01018 50S ribosomal protein 22.6 3.2E+02 0.0069 20.7 5.8 46 18-69 20-65 (99)
68 PRK13906 murB UDP-N-acetylenol 22.3 97 0.0021 28.2 3.4 25 47-71 45-69 (307)
69 TIGR01809 Shik-DH-AROM shikima 22.2 1.2E+02 0.0026 27.0 3.9 67 8-74 58-137 (282)
70 TIGR03609 S_layer_CsaB polysac 22.2 1.7E+02 0.0038 25.5 4.9 11 65-75 67-77 (298)
71 CHL00198 accA acetyl-CoA carbo 22.2 86 0.0019 29.3 3.0 25 124-148 277-301 (322)
72 PRK12549 shikimate 5-dehydroge 21.9 89 0.0019 27.9 3.0 66 9-74 64-139 (284)
73 PRK07714 hypothetical protein; 21.8 3.3E+02 0.0072 20.4 5.8 46 18-69 22-67 (100)
74 TIGR02482 PFKA_ATP 6-phosphofr 21.6 1.4E+02 0.003 27.4 4.2 57 47-103 76-134 (301)
75 KOG0276|consensus 21.6 16 0.00036 37.2 -1.9 92 43-140 174-271 (794)
76 PRK08227 autoinducer 2 aldolas 21.2 2.7E+02 0.0058 25.2 5.9 17 19-35 129-145 (264)
77 TIGR00677 fadh2_euk methylenet 21.1 1.9E+02 0.0041 26.0 4.9 24 52-75 116-139 (281)
78 PRK11891 aspartate carbamoyltr 20.9 2.6E+02 0.0056 27.1 6.1 71 18-94 192-271 (429)
79 TIGR00315 cdhB CO dehydrogenas 20.8 96 0.0021 26.0 2.8 23 52-74 18-40 (162)
80 TIGR01859 fruc_bis_ald_ fructo 20.7 2.1E+02 0.0046 25.8 5.2 74 17-94 153-233 (282)
81 TIGR03569 NeuB_NnaB N-acetylne 20.6 1.6E+02 0.0035 27.3 4.5 71 12-86 71-156 (329)
82 PF00582 Usp: Universal stress 20.5 3.2E+02 0.007 19.3 5.3 47 20-68 92-139 (140)
No 1
>KOG1342|consensus
Probab=100.00 E-value=2.1e-55 Score=402.44 Aligned_cols=186 Identities=48% Similarity=0.848 Sum_probs=164.6
Q ss_pred cccCCcc-ch---------HHHHHHH-HhhccceeE-------ecCCCCCCCcCChhhHHHHHHHHHhhCCCEEEecCCC
Q psy10341 11 QFSLTTK-GH---------GECVKFV-RDLNVPLLV-------LGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGG 72 (213)
Q Consensus 11 ~fNl~~~-g~---------~~~v~~v-k~~~~p~i~-------L~gD~Lg~fnLs~~g~~~cv~~v~s~~~p~llLGGGG 72 (213)
+.|+|++ |. ..++..+ ..|.|..|+ |+||||||||||++||++||+||+||++|+|+|||||
T Consensus 222 avNVPL~dGidD~sy~~if~pIi~~v~e~f~P~AiVLQCGaDSL~gDRlgcFnLsi~Gh~~Cv~fvksfn~pllvlGGGG 301 (425)
T KOG1342|consen 222 AVNVPLKDGIDDESYESIFKPIISKVMERFQPEAIVLQCGADSLAGDRLGCFNLSIKGHAECVKFVKSFNLPLLVLGGGG 301 (425)
T ss_pred EEccchhccCCcHHHHHHHHHHHHHHHHHhCCceEEEEcCCccccCCccceeeecchhHHHHHHHHHHcCCcEEEecCCc
Confidence 5699999 77 4455555 445555443 9999999999999999999999999999999999999
Q ss_pred CCCCccchhhhhhhhhhccccCCCCCCCCcccccCCCCCCCCCCCCCcccccCcHHHHHHHHHHHHhhcccccCCCcccc
Q psy10341 73 YTLRNVARCWTYETSLLVNEEISNDIPDSLYKDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMVAFSPSVQM 152 (213)
Q Consensus 73 Y~~~nvAR~Wt~~t~~~~~~~ip~~iP~~~y~~~y~pdy~L~~~~~~~~~n~N~~~~le~i~~~i~~nl~~~~~aPsvqm 152 (213)
||++||||||||||++++++++|++||+|+||+||+|||+|++. +++++|+|+++||++|+..+++||+++++||||||
T Consensus 302 YT~rNVARcWtYeT~v~~~~~~~~elP~n~y~~yF~PDy~l~~~-~~~~~n~Nt~~~l~~i~~~~~enL~~l~~apSVqm 380 (425)
T KOG1342|consen 302 YTLRNVARCWTYETGVLLDQELPNELPYNDYFEYFGPDYKLHID-PSNMENFNTPHYLESIRNEILENLRMLQHAPSVQM 380 (425)
T ss_pred cchhhhHHHHHHHhhhhcCccccccCCCccchhhhCCCcccccC-ccchhcccCHHHHHHHHHHHHHHHHhccCCCcccc
Confidence 99999999999999999999999999999999999999999999 69999999999999999999999999999999999
Q ss_pred cccCCCcccCCCCCccCCCCCCCCCCcccccccCCCCCCCCCCCCCC
Q psy10341 153 QDMIGDVFTRDIGAVLDEMDPDIKNPQLEEDKRVDPANEFYDGDNDQ 199 (213)
Q Consensus 153 ~~~p~~~~~~~~~~~~~~~~~~~r~~~~~~d~~~~~~~ef~~~~~~~ 199 (213)
|.+|+....+. ..+++++++.|.++...|..++..+|||++++++
T Consensus 381 ~~~p~~~~d~~--~~~~~~~~d~~~~~~~~~~~~~~~~e~~d~~~~~ 425 (425)
T KOG1342|consen 381 QMIPNPDFDED--MVEDEKDPDLRSSQESEDKDVQDDNEFYDGENEG 425 (425)
T ss_pred cccCCCccchh--hhhhhhCcccccchhhhhcccccchhhcccccCC
Confidence 99997322221 1145677889999999999999999999998763
No 2
>PTZ00063 histone deacetylase; Provisional
Probab=100.00 E-value=6.8e-40 Score=307.24 Aligned_cols=152 Identities=44% Similarity=0.787 Sum_probs=139.1
Q ss_pred cccCCcc-chH---------HHH-HHHHhhccceeE-------ecCCCCCCCcCChhhHHHHHHHHHhhCCCEEEecCCC
Q psy10341 11 QFSLTTK-GHG---------ECV-KFVRDLNVPLLV-------LGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGG 72 (213)
Q Consensus 11 ~fNl~~~-g~~---------~~v-~~vk~~~~p~i~-------L~gD~Lg~fnLs~~g~~~cv~~v~s~~~p~llLGGGG 72 (213)
++|+|++ |.+ +++ ..++.|.|.+|+ +.|||||+||||++||++|+++++++++|+++|||||
T Consensus 220 ~vNvPL~~G~~D~~Y~~~f~~ii~~~i~~f~Pd~IvvqaG~D~~~~DpLg~l~Lt~~g~~~~~~~~~~~~~pil~l~gGG 299 (436)
T PTZ00063 220 SVNVPLNDGIDDDSFVDLFKPVISKCVEVYRPGAIVLQCGADSLTGDRLGRFNLTIKGHAACVEFVRSLNIPLLVLGGGG 299 (436)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEECCccccCCCCCCCcccCHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 5899998 652 233 335778888765 8999999999999999999999999999999999999
Q ss_pred CCCCccchhhhhhhhhhccc--cCCCCCCCCcccccCCCCCCCCCCCCCcccccCcHHHHHHHHHHHHhhcccccCCCcc
Q psy10341 73 YTLRNVARCWTYETSLLVNE--EISNDIPDSLYKDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMVAFSPSV 150 (213)
Q Consensus 73 Y~~~nvAR~Wt~~t~~~~~~--~ip~~iP~~~y~~~y~pdy~L~~~~~~~~~n~N~~~~le~i~~~i~~nl~~~~~aPsv 150 (213)
|++++|||||+|+|++++|+ +|+++||+|+||++|+|+|+|++. +++|+|+|+++||++|+++|++|||++++||||
T Consensus 300 Y~~~~lar~w~~~t~~~~~~~~~~~~~iP~~~~~~~~~~~~~l~~~-~~~~~n~n~~~~l~~~~~~~~~~l~~~~~ap~v 378 (436)
T PTZ00063 300 YTIRNVARCWAYETGVILNKHDEMSDQISLNDYYDYYAPDFQLHLQ-PSNIPNYNSPEHLEKIKVKILENLRYLEHAPGV 378 (436)
T ss_pred CCchHHHHHHHHHHHHHhCCcccCCccCCCCcchhhcCCCeEeecC-cccccCCCCHHHHHHHHHHHHHHHhcCCCCCee
Confidence 99999999999999999997 799999999999999999999998 789999999999999999999999999999999
Q ss_pred cccccCCCcccCC
Q psy10341 151 QMQDMIGDVFTRD 163 (213)
Q Consensus 151 qm~~~p~~~~~~~ 163 (213)
|||++|++....+
T Consensus 379 ~~~~~~~~~~~~~ 391 (436)
T PTZ00063 379 QFAYVPPDFFDRD 391 (436)
T ss_pred ccccCCccccccc
Confidence 9999999886543
No 3
>PTZ00346 histone deacetylase; Provisional
Probab=99.91 E-value=2.9e-24 Score=201.45 Aligned_cols=134 Identities=32% Similarity=0.606 Sum_probs=108.7
Q ss_pred cccCCcc-chH---------HHH-HHHHhhccceeE-------ecCCCCCCCcCChhhHHHHHHHHHhhCCCEEEecCCC
Q psy10341 11 QFSLTTK-GHG---------ECV-KFVRDLNVPLLV-------LGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGG 72 (213)
Q Consensus 11 ~fNl~~~-g~~---------~~v-~~vk~~~~p~i~-------L~gD~Lg~fnLs~~g~~~cv~~v~s~~~p~llLGGGG 72 (213)
.+|+|++ |.+ +++ ..++.|.|.+|+ +.|||||+||||.+||.+|+++++++++|++++||||
T Consensus 238 ~vNVPL~~G~~D~~Yl~~f~~ii~p~l~~F~PdlIvvsaG~Da~~~DpLg~l~LT~~g~~~~~~~l~~~~~plv~vleGG 317 (429)
T PTZ00346 238 SMNLAVWDGITDFYYLGLFEHALHSIVRRYSPDAIVLQCGADSLAGDRLGLLNLSSFGHGQCVQAVRDLGIPMLALGGGG 317 (429)
T ss_pred EEeeeCCCCcCHHHHHHHHHHHHHHHHHhcCCCEEEEECCccCCCCCCCCCceeCHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 5788888 552 233 335778888765 8999999999999999999999999999999999999
Q ss_pred CCCCccchhhhhhhhhhccccCCCC--CC--CCcccccCCCCCCCCCCCCCcccccC-cHHHHH----HHHHHHHhhccc
Q psy10341 73 YTLRNVARCWTYETSLLVNEEISND--IP--DSLYKDFFQPDYNLHPEFVHKHDNAN-SKQYLE----LITKTVYDNLKM 143 (213)
Q Consensus 73 Y~~~nvAR~Wt~~t~~~~~~~ip~~--iP--~~~y~~~y~pdy~L~~~~~~~~~n~N-~~~~le----~i~~~i~~nl~~ 143 (213)
|++.++|||||++|++++|++||++ || +.+|.++|.|+|+|++. ++++.|.| +..+.+ +|..+|.++|+.
T Consensus 318 Y~~~~lar~w~~~t~~l~g~~i~~~~~lp~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (429)
T PTZ00346 318 YTIRNVAKLWAYETSILTGHPLPPNTVLPVAEMPLSGWLFQDSPLLIV-AQDRSNHVLPGLHCQRAYQMMTEQIDRHVPH 396 (429)
T ss_pred CCccHHHHHHHHHHHHHcCCCCCCCCCCCCCCCchhhhhcCCCccccc-cccccccCCCcchhHHHHHHHHHHHHhhhhc
Confidence 9999999999999999999999976 78 45889999999999998 46666666 344444 444555555555
Q ss_pred cc
Q psy10341 144 VA 145 (213)
Q Consensus 144 ~~ 145 (213)
+.
T Consensus 397 ~~ 398 (429)
T PTZ00346 397 IQ 398 (429)
T ss_pred cC
Confidence 55
No 4
>KOG1342|consensus
Probab=99.63 E-value=5.8e-16 Score=143.19 Aligned_cols=108 Identities=32% Similarity=0.499 Sum_probs=81.0
Q ss_pred ccCCCCCCcccCCccchHHHHHHHHhhccceeEecCCCCCCCcCChhhHHHHHHHHHhhCCCEEEecCCCCCCCccchhh
Q psy10341 3 TLSHDRLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGYTLRNVARCW 82 (213)
Q Consensus 3 ~l~gd~~g~fNl~~~g~~~~v~~vk~~~~p~i~L~gD~Lg~fnLs~~g~~~cv~~v~s~~~p~llLGGGGY~~~nvAR~W 82 (213)
||+|||+||||||++||++||++||+|++|+|+|||.+ +|++..++||.|.++. +
T Consensus 264 SL~gDRlgcFnLsi~Gh~~Cv~fvksfn~pllvlGGGG-----YT~rNVARcWtYeT~v-----~--------------- 318 (425)
T KOG1342|consen 264 SLAGDRLGCFNLSIKGHAECVKFVKSFNLPLLVLGGGG-----YTLRNVARCWTYETGV-----L--------------- 318 (425)
T ss_pred cccCCccceeeecchhHHHHHHHHHHcCCcEEEecCCc-----cchhhhHHHHHHHhhh-----h---------------
Confidence 89999999999999999999999999999999999987 8899999999999994 3
Q ss_pred hhhhhhhccccCCCCCCCCccc-ccCC--CCCCCCCCCCCcccc-cCcHHHHHHHHHHHHh
Q psy10341 83 TYETSLLVNEEISNDIPDSLYK-DFFQ--PDYNLHPEFVHKHDN-ANSKQYLELITKTVYD 139 (213)
Q Consensus 83 t~~t~~~~~~~ip~~iP~~~y~-~~y~--pdy~L~~~~~~~~~n-~N~~~~le~i~~~i~~ 139 (213)
+...+..+||.+- +.+|| +.|. ++-+-.-+.++...- +-..+.+++++....+
T Consensus 319 ---~~~~~~~elP~n~-y~~yF~PDy~l~~~~~~~~n~Nt~~~l~~i~~~~~enL~~l~~a 375 (425)
T KOG1342|consen 319 ---LDQELPNELPYND-YFEYFGPDYKLHIDPSNMENFNTPHYLESIRNEILENLRMLQHA 375 (425)
T ss_pred ---cCccccccCCCcc-chhhhCCCcccccCccchhcccCHHHHHHHHHHHHHHHHhccCC
Confidence 5589999999987 55554 4774 332222222333222 2234566666554444
No 5
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.27 E-value=6.2e-12 Score=115.59 Aligned_cols=101 Identities=24% Similarity=0.432 Sum_probs=81.0
Q ss_pred cccCCcc-ch---------HH-HHHHHHhhccceeE-------ecCCCCCCCcCChhhHHHHHHHHHhhC----CCEEEe
Q psy10341 11 QFSLTTK-GH---------GE-CVKFVRDLNVPLLV-------LGGGGLGQFSLTTKGHGECVKFVRDLN----VPLLVL 68 (213)
Q Consensus 11 ~fNl~~~-g~---------~~-~v~~vk~~~~p~i~-------L~gD~Lg~fnLs~~g~~~cv~~v~s~~----~p~llL 68 (213)
.+|||++ |. .. +...++.|.|.+|+ +.+||||+||||..++++|.++++++. .|++++
T Consensus 209 ~vNiPLp~g~~d~~y~~a~~~~v~~~~~~f~PdlvivsaG~D~h~~Dpl~~~~Lt~~~~~~~~~~v~~~a~~~~~~~~~v 288 (340)
T COG0123 209 NVNIPLPPGTGDDSYLEALEEIVLPLLEEFKPDLVIVSAGFDAHRGDPLGRLNLTEEGYAKIGRAVRKLAEGYGGPVVAV 288 (340)
T ss_pred eEeeecCCCCCcHHHHHHHHHHHHHHHHhcCCCEEEEecCcccCCCCccceeecCHHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 6899997 44 22 23345778877765 889999999999999999999999874 599999
Q ss_pred cCCCCCCCccchhhhhhhhhhcccc---CCCCCCCC-cccccCCCCC
Q psy10341 69 GGGGYTLRNVARCWTYETSLLVNEE---ISNDIPDS-LYKDFFQPDY 111 (213)
Q Consensus 69 GGGGY~~~nvAR~Wt~~t~~~~~~~---ip~~iP~~-~y~~~y~pdy 111 (213)
+||||+..+++|+|+.++..+.|.. .+..++.. +++..|.+++
T Consensus 289 leGGY~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (340)
T COG0123 289 LEGGYNLDALARSLVAFLAGLAGLVEEELEEPLPEDLELRRAFRADY 335 (340)
T ss_pred ecCCCChHHHHHHHHHHHHHHcCCCccccccccccchhhhhhhccch
Confidence 9999999999999999999999954 44556655 5666666655
No 6
>PF00850 Hist_deacetyl: Histone deacetylase domain; InterPro: IPR023801 Regulation of transcription is, in part, modulated by reversible histone acetylation on several lysine. Histone deacetylases (HDA) catalyse the removal of the acetyl group. Histone deacetylases, acetoin utilization proteins and acetylpolyamine amidohydrolases are all members of this ancient protein superfamily []. HDAs function in multi-subunit complexes, reversing the acetylation of histones by histone acetyltransferases [, ], and are also believed to deacetylate general transcription factors such as TFIIF and sequence-specific transcription factors such as p53 []. Thus, HDAs contribute to the regulation of transcription, in particular transcriptional repression []. At N-terminal tails of histones, removal of the acetyl group from the epsilon-amino group of a lysine side chain will restore its positivecharge, which may stabilise the histone-DNA interaction and prevent activating transcription factors binding to promoter elements []. HDAs play important roles in the cell cycle and differentiation, and their deregulation can contribute to the development of cancer [, ]. This entry represents the structural domain found in histone deacetylases. It consists of a 3-layer(alpha-beta-alpha) sandwich.; PDB: 4A69_A 2VQV_A 2VQO_A 2VQJ_A 2VQQ_B 2VQM_A 2VQW_G 3MAX_C 3MEN_D 1T64_B ....
Probab=99.12 E-value=3.8e-11 Score=108.30 Aligned_cols=79 Identities=25% Similarity=0.476 Sum_probs=62.2
Q ss_pred cccCCcc-ch---------HHHH-HHHHhhccceeE-------ecCCCCCCCcCChhhHHHHHHHHHhhCC----CEEEe
Q psy10341 11 QFSLTTK-GH---------GECV-KFVRDLNVPLLV-------LGGGGLGQFSLTTKGHGECVKFVRDLNV----PLLVL 68 (213)
Q Consensus 11 ~fNl~~~-g~---------~~~v-~~vk~~~~p~i~-------L~gD~Lg~fnLs~~g~~~cv~~v~s~~~----p~llL 68 (213)
.+|++++ |. .+++ ..+++|.|.+|+ +.+||||.|+||.+|+.++.+.|+++.. |++++
T Consensus 210 ~~NipL~~g~~d~~y~~~~~~~l~~~~~~f~P~~ivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~~~~~a~~~~~~~v~v 289 (311)
T PF00850_consen 210 NLNIPLPPGTGDDEYLEAFEEILLPALEEFRPDLIVVSAGFDAHAGDPLGGLNLTPEGYRELTRRLKSLAKRHCIPVVSV 289 (311)
T ss_dssp EEEEEE-TTEBHHHHHHHHHHHHHHHHHHHT-SEEEEEE-STTBTTSTT-SEBB-HHHHHHHHHHHHTTHSHHSGCEEEE
T ss_pred eEecccccccchHHHHHHHhhccccchhcccCcEEEEccCcccchhccccCcCCCHHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 6788888 43 3344 445788888866 8899999999999999999999999755 99999
Q ss_pred cCCCCCCCccchhhhhhhhhh
Q psy10341 69 GGGGYTLRNVARCWTYETSLL 89 (213)
Q Consensus 69 GGGGY~~~nvAR~Wt~~t~~~ 89 (213)
+||||+..++++||+..++.+
T Consensus 290 leGGY~~~~~~~~~~~~~~~L 310 (311)
T PF00850_consen 290 LEGGYNPESLARSWAAVIAAL 310 (311)
T ss_dssp E-S-SSHHHHHHHHHHHHHHH
T ss_pred ECCCCChhHHHHHHHHHHHHh
Confidence 999999999999999998765
No 7
>PTZ00063 histone deacetylase; Provisional
Probab=98.75 E-value=2e-08 Score=95.36 Aligned_cols=124 Identities=31% Similarity=0.506 Sum_probs=81.3
Q ss_pred ccCCCCCCcccCCccchHHHHHHHHhhccceeEecCCCCCCCcCChhhHHHHHHHHHhhCCCEEEecCCCCCCCccchhh
Q psy10341 3 TLSHDRLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGYTLRNVARCW 82 (213)
Q Consensus 3 ~l~gd~~g~fNl~~~g~~~~v~~vk~~~~p~i~L~gD~Lg~fnLs~~g~~~cv~~v~s~~~p~llLGGGGY~~~nvAR~W 82 (213)
+++|||+|+||||++|+++|++++++++.|+++|+|.+ +++.+.++||.++++. ++|
T Consensus 262 ~~~~DpLg~l~Lt~~g~~~~~~~~~~~~~pil~l~gGG-----Y~~~~lar~w~~~t~~-----~~~------------- 318 (436)
T PTZ00063 262 SLTGDRLGRFNLTIKGHAACVEFVRSLNIPLLVLGGGG-----YTIRNVARCWAYETGV-----ILN------------- 318 (436)
T ss_pred ccCCCCCCCcccCHHHHHHHHHHHHhcCCCEEEEeCcc-----CCchHHHHHHHHHHHH-----HhC-------------
Confidence 68999999999999999999999999999999988854 5678899999999985 333
Q ss_pred hhhhhhhccccCCCCCCCCcccccCCCCC--CCCCCCCCcccccCc-HHHHHHHHHHHHh-hcccccCCCcccc
Q psy10341 83 TYETSLLVNEEISNDIPDSLYKDFFQPDY--NLHPEFVHKHDNANS-KQYLELITKTVYD-NLKMVAFSPSVQM 152 (213)
Q Consensus 83 t~~t~~~~~~~ip~~iP~~~y~~~y~pdy--~L~~~~~~~~~n~N~-~~~le~i~~~i~~-nl~~~~~aPsvqm 152 (213)
...-+..+||++-.+..|.+.|.... +...+.++...-+.. .+.+++++..... .+++...+|++..
T Consensus 319 ---~~~~~~~~iP~~~~~~~~~~~~~l~~~~~~~~n~n~~~~l~~~~~~~~~~l~~~~~ap~v~~~~~~~~~~~ 389 (436)
T PTZ00063 319 ---KHDEMSDQISLNDYYDYYAPDFQLHLQPSNIPNYNSPEHLEKIKVKILENLRYLEHAPGVQFAYVPPDFFD 389 (436)
T ss_pred ---CcccCCccCCCCcchhhcCCCeEeecCcccccCCCCHHHHHHHHHHHHHHHhcCCCCCeeccccCCccccc
Confidence 11247788998854444545675332 222222333222222 3455555431111 3445556666644
No 8
>PTZ00346 histone deacetylase; Provisional
Probab=98.70 E-value=3.5e-08 Score=93.47 Aligned_cols=109 Identities=30% Similarity=0.478 Sum_probs=82.2
Q ss_pred ccCCCCCCcccCCccchHHHHHHHHhhccceeEecCCCCCCCcCChhhHHHHHHHHHhhCCCEEEecCCCCCCCccchhh
Q psy10341 3 TLSHDRLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGYTLRNVARCW 82 (213)
Q Consensus 3 ~l~gd~~g~fNl~~~g~~~~v~~vk~~~~p~i~L~gD~Lg~fnLs~~g~~~cv~~v~s~~~p~llLGGGGY~~~nvAR~W 82 (213)
++.|||+|.+|||..|+.+|++++++++.|++++.|.+ +++.+.++||.++++. ++|
T Consensus 280 a~~~DpLg~l~LT~~g~~~~~~~l~~~~~plv~vleGG-----Y~~~~lar~w~~~t~~-----l~g------------- 336 (429)
T PTZ00346 280 SLAGDRLGLLNLSSFGHGQCVQAVRDLGIPMLALGGGG-----YTIRNVAKLWAYETSI-----LTG------------- 336 (429)
T ss_pred CCCCCCCCCceeCHHHHHHHHHHHHhcCCCEEEEeCCc-----CCccHHHHHHHHHHHH-----HcC-------------
Confidence 57899999999999999999999999999998887744 4567899999999985 333
Q ss_pred hhhhhhhccccCC-CCCCCCcccccCCCCCCC--CCCCCCcccccCc----HHHHHHHHHHHH
Q psy10341 83 TYETSLLVNEEIS-NDIPDSLYKDFFQPDYNL--HPEFVHKHDNANS----KQYLELITKTVY 138 (213)
Q Consensus 83 t~~t~~~~~~~ip-~~iP~~~y~~~y~pdy~L--~~~~~~~~~n~N~----~~~le~i~~~i~ 138 (213)
..+--+..|| +.+|+++||..+.+.+.+ ++. +.+....|. +..+++|+..+.
T Consensus 337 ---~~i~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (429)
T PTZ00346 337 ---HPLPPNTVLPVAEMPLSGWLFQDSPLLIVAQDRS-NHVLPGLHCQRAYQMMTEQIDRHVP 395 (429)
T ss_pred ---CCCCCCCCCCCCCCchhhhhcCCCcccccccccc-ccCCCcchhHHHHHHHHHHHHhhhh
Confidence 1233345689 599999999988777777 555 444444444 356777765443
No 9
>KOG1344|consensus
Probab=95.64 E-value=0.018 Score=51.85 Aligned_cols=57 Identities=26% Similarity=0.573 Sum_probs=45.6
Q ss_pred HHHHHH-HHhhccceeE-------ecCCCCCCCcCChhhHHH----HHHHHHhhCCCEEEecCCCCCCC
Q psy10341 20 GECVKF-VRDLNVPLLV-------LGGGGLGQFSLTTKGHGE----CVKFVRDLNVPLLVLGGGGYTLR 76 (213)
Q Consensus 20 ~~~v~~-vk~~~~p~i~-------L~gD~Lg~fnLs~~g~~~----cv~~v~s~~~p~llLGGGGY~~~ 76 (213)
.+|+.. +++|.|.+++ |-|||||.+..|..|.-+ ..++++..++|+++|--|||-.+
T Consensus 237 ~r~l~~sl~ef~Pd~VvYNAGTDiLeGDpLG~L~ISp~Gi~~RDelVFr~~R~~~iPvvMltSGGY~K~ 305 (324)
T KOG1344|consen 237 KRCLMQSLAEFRPDMVVYNAGTDILEGDPLGNLAISPEGIIERDELVFRTFRALGIPVVMLTSGGYLKA 305 (324)
T ss_pred HHHHHHHHHhhCCcEEEEeCCCccccCCCCCCeeecccccchhhHHHHHHHHHcCCcEEEEecCceehh
Confidence 445554 4677777754 999999999999988744 67777888999999999999753
No 10
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.89 E-value=0.038 Score=51.28 Aligned_cols=53 Identities=23% Similarity=0.327 Sum_probs=43.4
Q ss_pred ccCCCCCCcccCCccchHHHHHHHHhhcc----ceeEecCCCCCCCcCChhhHHHHHHHHHh
Q psy10341 3 TLSHDRLGQFSLTTKGHGECVKFVRDLNV----PLLVLGGGGLGQFSLTTKGHGECVKFVRD 60 (213)
Q Consensus 3 ~l~gd~~g~fNl~~~g~~~~v~~vk~~~~----p~i~L~gD~Lg~fnLs~~g~~~cv~~v~s 60 (213)
+..+||+|+||||..++.+|.++++++.. |++++.|.+ ++..+.+++|..+..
T Consensus 251 ~h~~Dpl~~~~Lt~~~~~~~~~~v~~~a~~~~~~~~~vleGG-----Y~~~~l~~~~~~~~~ 307 (340)
T COG0123 251 AHRGDPLGRLNLTEEGYAKIGRAVRKLAEGYGGPVVAVLEGG-----YNLDALARSLVAFLA 307 (340)
T ss_pred cCCCCccceeecCHHHHHHHHHHHHHHHHhcCCCeEEEecCC-----CChHHHHHHHHHHHH
Confidence 46799999999999999999999988876 787766643 556688888888765
No 11
>KOG1343|consensus
Probab=94.66 E-value=0.16 Score=52.11 Aligned_cols=74 Identities=18% Similarity=0.299 Sum_probs=63.2
Q ss_pred HHHHHhhccceeE-------ecCCCCCCCcCChhhHHHHHHHHHhh-CCCEEEecCCCCCCCccchhhhhhhhhhccccC
Q psy10341 23 VKFVRDLNVPLLV-------LGGGGLGQFSLTTKGHGECVKFVRDL-NVPLLVLGGGGYTLRNVARCWTYETSLLVNEEI 94 (213)
Q Consensus 23 v~~vk~~~~p~i~-------L~gD~Lg~fnLs~~g~~~cv~~v~s~-~~p~llLGGGGY~~~nvAR~Wt~~t~~~~~~~i 94 (213)
..+++.|++.++. -.|||||++.+|.++++.--..++.+ ++++++.--|||+...++.+=...+..++|.+.
T Consensus 681 ~Pia~~F~pd~VlvSagfDaa~~dplg~~~vt~~~~~~lt~~l~~lagGRvv~~LEggy~lt~is~s~~~~~~~llg~~~ 760 (797)
T KOG1343|consen 681 MPIAYEFNPDLVLVSAGFDAAEGDPLGGYKVTAECFGYLTQQLMGLAGGRVVLALEGGYDLTAISDSAEACVRALLGDSL 760 (797)
T ss_pred HHHHHHhCCCeEEEeccccccccCccccccccHhHHHHHHHHHHHhcCCcEEEEecCCcchhhhhHHHHHHHHhccCCCC
Confidence 3445888866543 56799999999999999999999886 689999999999999999999999999999887
Q ss_pred CC
Q psy10341 95 SN 96 (213)
Q Consensus 95 p~ 96 (213)
|.
T Consensus 761 p~ 762 (797)
T KOG1343|consen 761 PP 762 (797)
T ss_pred CC
Confidence 76
No 12
>PF00850 Hist_deacetyl: Histone deacetylase domain; InterPro: IPR023801 Regulation of transcription is, in part, modulated by reversible histone acetylation on several lysine. Histone deacetylases (HDA) catalyse the removal of the acetyl group. Histone deacetylases, acetoin utilization proteins and acetylpolyamine amidohydrolases are all members of this ancient protein superfamily []. HDAs function in multi-subunit complexes, reversing the acetylation of histones by histone acetyltransferases [, ], and are also believed to deacetylate general transcription factors such as TFIIF and sequence-specific transcription factors such as p53 []. Thus, HDAs contribute to the regulation of transcription, in particular transcriptional repression []. At N-terminal tails of histones, removal of the acetyl group from the epsilon-amino group of a lysine side chain will restore its positivecharge, which may stabilise the histone-DNA interaction and prevent activating transcription factors binding to promoter elements []. HDAs play important roles in the cell cycle and differentiation, and their deregulation can contribute to the development of cancer [, ]. This entry represents the structural domain found in histone deacetylases. It consists of a 3-layer(alpha-beta-alpha) sandwich.; PDB: 4A69_A 2VQV_A 2VQO_A 2VQJ_A 2VQQ_B 2VQM_A 2VQW_G 3MAX_C 3MEN_D 1T64_B ....
Probab=84.27 E-value=0.9 Score=41.20 Aligned_cols=55 Identities=20% Similarity=0.164 Sum_probs=38.0
Q ss_pred ccCCCCCCcccCCccchHHHHHHHHhhccce--eEecCCCCCCCcCChhhHHHHHHHHHh
Q psy10341 3 TLSHDRLGQFSLTTKGHGECVKFVRDLNVPL--LVLGGGGLGQFSLTTKGHGECVKFVRD 60 (213)
Q Consensus 3 ~l~gd~~g~fNl~~~g~~~~v~~vk~~~~p~--i~L~gD~Lg~fnLs~~g~~~cv~~v~s 60 (213)
++.+|++|.++||.+|+.++.+.++++.... =++.-- =|+ ++....++||..+.+
T Consensus 252 ~~~~Dplg~~~lt~~~~~~~~~~~~~~a~~~~~~~v~vl-eGG--Y~~~~~~~~~~~~~~ 308 (311)
T PF00850_consen 252 AHAGDPLGGLNLTPEGYRELTRRLKSLAKRHCIPVVSVL-EGG--YNPESLARSWAAVIA 308 (311)
T ss_dssp TBTTSTT-SEBB-HHHHHHHHHHHHTTHSHHSGCEEEEE--S---SSHHHHHHHHHHHHH
T ss_pred cchhccccCcCCCHHHHHHHHHHHHHHHHhcCCcEEEEE-CCC--CChhHHHHHHHHHHH
Confidence 5789999999999999999999999998800 000000 022 667889999998865
No 13
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=82.42 E-value=3.9 Score=37.66 Aligned_cols=65 Identities=14% Similarity=0.271 Sum_probs=55.0
Q ss_pred HHHHHHHHhhccceeEecCCCCCCCcCChhhHHHHHHHHHhh---CCCEEEecCCCCCCCccchhhhhhhh
Q psy10341 20 GECVKFVRDLNVPLLVLGGGGLGQFSLTTKGHGECVKFVRDL---NVPLLVLGGGGYTLRNVARCWTYETS 87 (213)
Q Consensus 20 ~~~v~~vk~~~~p~i~L~gD~Lg~fnLs~~g~~~cv~~v~s~---~~p~llLGGGGY~~~nvAR~Wt~~t~ 87 (213)
.++++.+++-++.+|+++||=+=.-+.|.+......++++.+ ++|++++.| |+...+|.+.+...
T Consensus 30 ~~~l~~a~~~~vD~vliAGDlFd~~~Ps~~a~~~~~~~l~~l~~~~Ipv~~I~G---NHD~~~~~~~~~~~ 97 (390)
T COG0420 30 DELLEIAKEEKVDFVLIAGDLFDTNNPSPRALKLFLEALRRLKDAGIPVVVIAG---NHDSPSRLSEASPL 97 (390)
T ss_pred HHHHHHHHHccCCEEEEccccccCCCCCHHHHHHHHHHHHHhccCCCcEEEecC---CCCchhccccccch
Confidence 678888999999999999998888999999999999999886 499999998 78777766544433
No 14
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=80.88 E-value=5.8 Score=32.54 Aligned_cols=53 Identities=15% Similarity=0.348 Sum_probs=41.8
Q ss_pred chHHHHHHHHhhccceeEecCCCCCCCcCChhhHHHHHHHHHhh---CCCEEEecC
Q psy10341 18 GHGECVKFVRDLNVPLLVLGGGGLGQFSLTTKGHGECVKFVRDL---NVPLLVLGG 70 (213)
Q Consensus 18 g~~~~v~~vk~~~~p~i~L~gD~Lg~fnLs~~g~~~cv~~v~s~---~~p~llLGG 70 (213)
...++++.+++.++.+|+++||=+.....+.+-.....+++.++ ++|+.++-|
T Consensus 29 ~~~~~~~~~~~~~~d~i~~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G 84 (223)
T cd00840 29 AFEEIVELAIEEKVDFVLIAGDLFDSNNPSPEALELLIEALRRLKEAGIPVFIIAG 84 (223)
T ss_pred HHHHHHHHHHhcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEecC
Confidence 45778888888899999999998777766666666777777766 789988776
No 15
>COG1654 BirA Biotin operon repressor [Transcription]
Probab=65.40 E-value=4.3 Score=30.30 Aligned_cols=50 Identities=18% Similarity=0.331 Sum_probs=40.8
Q ss_pred ecCCCCC-CCcCChhhHHHHHHHHHhhCCCEEEecCCCCCCCccchhhhhh
Q psy10341 36 LGGGGLG-QFSLTTKGHGECVKFVRDLNVPLLVLGGGGYTLRNVARCWTYE 85 (213)
Q Consensus 36 L~gD~Lg-~fnLs~~g~~~cv~~v~s~~~p~llLGGGGY~~~nvAR~Wt~~ 85 (213)
++|+.|| .+.+|-....++++.++..++++....+=||.+......+...
T Consensus 20 ~SGe~La~~LgiSRtaVwK~Iq~Lr~~G~~I~s~~~kGY~L~~~~~ll~~~ 70 (79)
T COG1654 20 VSGEKLAEELGISRTAVWKHIQQLREEGVDIESVRGKGYLLPQLPDLLPQE 70 (79)
T ss_pred ccHHHHHHHHCccHHHHHHHHHHHHHhCCceEecCCCceeccCccccCcHH
Confidence 4555555 3678888999999999999999999999999988777766544
No 16
>KOG1344|consensus
Probab=65.25 E-value=6.8 Score=35.64 Aligned_cols=37 Identities=27% Similarity=0.518 Sum_probs=29.1
Q ss_pred cCCCCCCcccCCccchH----HHHHHHHhhccceeE-ecCCC
Q psy10341 4 LSHDRLGQFSLTTKGHG----ECVKFVRDLNVPLLV-LGGGG 40 (213)
Q Consensus 4 l~gd~~g~fNl~~~g~~----~~v~~vk~~~~p~i~-L~gD~ 40 (213)
|-|||+|...||..|.. ..-..+|..++|+++ ++|..
T Consensus 261 LeGDpLG~L~ISp~Gi~~RDelVFr~~R~~~iPvvMltSGGY 302 (324)
T KOG1344|consen 261 LEGDPLGNLAISPEGIIERDELVFRTFRALGIPVVMLTSGGY 302 (324)
T ss_pred ccCCCCCCeeecccccchhhHHHHHHHHHcCCcEEEEecCce
Confidence 78999999999999983 355667888999855 66643
No 17
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=53.99 E-value=45 Score=29.42 Aligned_cols=52 Identities=21% Similarity=0.298 Sum_probs=41.1
Q ss_pred HHHHHHHhhccceeEecCCCCCCCcCChhhHHHHHHHHHhhCCCEEEecCCCCCCC
Q psy10341 21 ECVKFVRDLNVPLLVLGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGYTLR 76 (213)
Q Consensus 21 ~~v~~vk~~~~p~i~L~gD~Lg~fnLs~~g~~~cv~~v~s~~~p~llLGGGGY~~~ 76 (213)
....+++.++.|+|++.+.+||+.|=+. --++.+++-++|++-+=..||+..
T Consensus 127 ~~~D~~~~~~lpvILV~~~~LGtINHtl----Lt~eal~~~gl~l~G~I~n~~~~~ 178 (223)
T COG0132 127 TFADLAVQLQLPVILVVGIKLGTINHTL----LTVEALRARGLPLAGWVANGINPE 178 (223)
T ss_pred cHHHHHHHcCCCEEEEecCCccHHHHHH----HHHHHHHHCCCCEEEEEEccCCCc
Confidence 3567789999999999999999988442 357788888999887766666653
No 18
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=46.01 E-value=66 Score=28.07 Aligned_cols=50 Identities=12% Similarity=0.177 Sum_probs=33.4
Q ss_pred HHHHHHHHhhccceeEecCCCCCCCcCChhhHHHHHHHHHhhCCCEEEecC
Q psy10341 20 GECVKFVRDLNVPLLVLGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGG 70 (213)
Q Consensus 20 ~~~v~~vk~~~~p~i~L~gD~Lg~fnLs~~g~~~cv~~v~s~~~p~llLGG 70 (213)
..+++.+++-.+.+++++||= ..+....+.+.++++.+.++++|++++=|
T Consensus 21 e~l~~~~~~~~~D~vv~~GDl-~~~g~~~~~~~~~l~~l~~l~~pv~~V~G 70 (224)
T cd07388 21 EKLVGLAPETGADAIVLIGNL-LPKAAKSEDYAAFFRILGEAHLPTFYVPG 70 (224)
T ss_pred HHHHHHHhhcCCCEEEECCCC-CCCCCCHHHHHHHHHHHHhcCCceEEEcC
Confidence 345555555677889999994 22332345566677777777889888866
No 19
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=43.02 E-value=75 Score=30.29 Aligned_cols=43 Identities=16% Similarity=0.288 Sum_probs=36.4
Q ss_pred chHHHHHHHHhhccceeEecCCCCCCCcCChhhHHHHHHHHHh
Q psy10341 18 GHGECVKFVRDLNVPLLVLGGGGLGQFSLTTKGHGECVKFVRD 60 (213)
Q Consensus 18 g~~~~v~~vk~~~~p~i~L~gD~Lg~fnLs~~g~~~cv~~v~s 60 (213)
...++++.+++-++.+|+++||=+-.-+-|.+...+|++.++.
T Consensus 30 ~f~eil~~a~~~~vD~VLiaGDLFd~~~Ps~~~~~~~~~~lr~ 72 (405)
T TIGR00583 30 TFEEVLQIAKEQDVDMILLGGDLFHENKPSRKSLYQVLRSLRL 72 (405)
T ss_pred HHHHHHHHHHHcCCCEEEECCccCCCCCCCHHHHHHHHHHHHH
Confidence 3478888899999999999999877777788888888888875
No 20
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=41.78 E-value=88 Score=26.04 Aligned_cols=51 Identities=14% Similarity=0.241 Sum_probs=36.3
Q ss_pred chHHHHHHHHhh--ccceeEecCCCCCCCcCChhhHHHHHHHHHhhCCCEEEecC
Q psy10341 18 GHGECVKFVRDL--NVPLLVLGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGG 70 (213)
Q Consensus 18 g~~~~v~~vk~~--~~p~i~L~gD~Lg~fnLs~~g~~~cv~~v~s~~~p~llLGG 70 (213)
....+++.+++. ++.+++++||=.... +...+....+.+..+++|++++-|
T Consensus 26 ~l~~~~~~i~~~~~~~d~vi~~GDl~~~~--~~~~~~~~~~~l~~~~~p~~~v~G 78 (240)
T cd07402 26 SLEAVLAHINALHPRPDLVLVTGDLTDDG--SPESYERLRELLAALPIPVYLLPG 78 (240)
T ss_pred HHHHHHHHHHhcCCCCCEEEECccCCCCC--CHHHHHHHHHHHhhcCCCEEEeCC
Confidence 346677777777 777899999954332 244566677777777999888877
No 21
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=40.76 E-value=74 Score=26.96 Aligned_cols=47 Identities=23% Similarity=0.391 Sum_probs=36.0
Q ss_pred HHHHHHHHhhccceeEecCCCCCCCcCChhhHHHHHHHHHhhCCCEEEecC
Q psy10341 20 GECVKFVRDLNVPLLVLGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGG 70 (213)
Q Consensus 20 ~~~v~~vk~~~~p~i~L~gD~Lg~fnLs~~g~~~cv~~v~s~~~p~llLGG 70 (213)
..+.+.+++.+.|+|++|+.- .. ..++..++.+++..+++|++..+.
T Consensus 25 ~~aa~lI~~AKrPlIivG~ga---~~-~~ea~e~l~elaEkl~iPVvtT~~ 71 (171)
T PRK00945 25 KIAAMMIKKAKRPLLVVGSLL---LD-DEELLDRAVKIAKKANIPVAATGG 71 (171)
T ss_pred HHHHHHHHhCCCcEEEECcCc---cc-cchHHHHHHHHHHHHCCCEEEccc
Confidence 557778889999999988853 11 145667788888889999998875
No 22
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=40.70 E-value=98 Score=29.30 Aligned_cols=60 Identities=18% Similarity=0.165 Sum_probs=39.7
Q ss_pred HHHHHHHHhhccceeEecCCCCCCCcCChhh---HHHHHHHHHhhCCCEEEecCCCCCCCccchhh
Q psy10341 20 GECVKFVRDLNVPLLVLGGGGLGQFSLTTKG---HGECVKFVRDLNVPLLVLGGGGYTLRNVARCW 82 (213)
Q Consensus 20 ~~~v~~vk~~~~p~i~L~gD~Lg~fnLs~~g---~~~cv~~v~s~~~p~llLGGGGY~~~nvAR~W 82 (213)
..+++.+++.++.+|+++||=+-..+-+... ..+.+..++..++|++++.| |+...+|.+
T Consensus 29 ~~l~~~i~~~~~D~viIaGDifD~~~p~~~a~~~~~~~l~~L~~~~~~v~~I~G---NHD~~~~l~ 91 (407)
T PRK10966 29 DWLLEQVQEHQVDAIIVAGDIFDTGSPPSYARELYNRFVVNLQQTGCQLVVLAG---NHDSVATLN 91 (407)
T ss_pred HHHHHHHHhcCCCEEEECCccccCCCCcHHHHHHHHHHHHHHHhcCCcEEEEcC---CCCChhhhh
Confidence 4577778888999999999965444433222 12334445556789998887 666666654
No 23
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=40.50 E-value=66 Score=27.99 Aligned_cols=54 Identities=13% Similarity=0.091 Sum_probs=37.8
Q ss_pred cchHHHHHHHHhhccceeEecCCCCCCCcC-ChhhHHHHHHHHHhhCCCEEEecC
Q psy10341 17 KGHGECVKFVRDLNVPLLVLGGGGLGQFSL-TTKGHGECVKFVRDLNVPLLVLGG 70 (213)
Q Consensus 17 ~g~~~~v~~vk~~~~p~i~L~gD~Lg~fnL-s~~g~~~cv~~v~s~~~p~llLGG 70 (213)
+-...+++.+.+..+.+++++||=...... +.+-+..+.+.+..+++|++++-|
T Consensus 27 ~~l~~~i~~i~~~~~d~vv~~GDlv~~~~~~~~~~~~~~~~~l~~l~~p~~~v~G 81 (267)
T cd07396 27 EKLEEAVEEWNRESLDFVVQLGDIIDGDNARAEEALDAVLAILDRLKGPVHHVLG 81 (267)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCeecCCCchHHHHHHHHHHHHHhcCCCEEEecC
Confidence 344667778877778899999995322211 225567777888888999998876
No 24
>COG1880 CdhB CO dehydrogenase/acetyl-CoA synthase epsilon subunit [Energy production and conversion]
Probab=40.10 E-value=67 Score=27.44 Aligned_cols=46 Identities=24% Similarity=0.437 Sum_probs=35.8
Q ss_pred HHHHHH-HHhhccceeEecCCCCCCCcCChhhHHHHHHHHHhhCCCEEEecC
Q psy10341 20 GECVKF-VRDLNVPLLVLGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGG 70 (213)
Q Consensus 20 ~~~v~~-vk~~~~p~i~L~gD~Lg~fnLs~~g~~~cv~~v~s~~~p~llLGG 70 (213)
.+++.- +|+.+-|++++|..- +.-+=....++++..|++|++..|+
T Consensus 25 p~v~ammIkkAkrPLlivGp~~-----~dee~~E~~vKi~ekfnipivaTa~ 71 (170)
T COG1880 25 PEVVAMMIKKAKRPLLIVGPLA-----LDEELLELAVKIIEKFNIPIVATAS 71 (170)
T ss_pred cHHHHHHHHhcCCceEEecccc-----cCHHHHHHHHHHHHhcCCceEecch
Confidence 445544 589999999999864 3355567889999999999999875
No 25
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=39.29 E-value=1e+02 Score=26.91 Aligned_cols=59 Identities=15% Similarity=0.369 Sum_probs=40.5
Q ss_pred hHHHHHHHHhhccceeEecCCCCCCCcCChhhH---HHHHHHHHhhC-CCEEEecCCCCCCCccch
Q psy10341 19 HGECVKFVRDLNVPLLVLGGGGLGQFSLTTKGH---GECVKFVRDLN-VPLLVLGGGGYTLRNVAR 80 (213)
Q Consensus 19 ~~~~v~~vk~~~~p~i~L~gD~Lg~fnLs~~g~---~~cv~~v~s~~-~p~llLGGGGY~~~nvAR 80 (213)
..++++.+++.++.+|+++||=+-..+-+.... .++++.+.+.+ +|++++-| |+....|
T Consensus 28 l~~l~~~~~~~~~D~lli~GDi~d~~~p~~~~~~~~~~~l~~l~~~~~i~v~~i~G---NHD~~~~ 90 (253)
T TIGR00619 28 LDDLLEFAKAEQIDALLVAGDVFDTANPPAEAQELFNAFFRNLSDANPIPIVVISG---NHDSAQR 90 (253)
T ss_pred HHHHHHHHHHcCCCEEEECCccCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEcc---CCCChhh
Confidence 356778888888999999999766665444332 34444555555 89998877 7666555
No 26
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=39.01 E-value=77 Score=26.56 Aligned_cols=47 Identities=19% Similarity=0.412 Sum_probs=36.4
Q ss_pred HHHHHHHHhhccceeEecCCCCCCCcCChhhHHHHHHHHHhhCCCEEEecCC
Q psy10341 20 GECVKFVRDLNVPLLVLGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGG 71 (213)
Q Consensus 20 ~~~v~~vk~~~~p~i~L~gD~Lg~fnLs~~g~~~cv~~v~s~~~p~llLGGG 71 (213)
.++.+.+++.+.|+|++|+.- .+......+.+++..+++|++..+.|
T Consensus 18 ~~aa~lLk~AKRPvIivG~ga-----~~~~a~e~l~~laEklgiPVvtT~~~ 64 (162)
T TIGR00315 18 KLVAMMIKRAKRPLLIVGPEN-----LEDEEKELIVKFIEKFDLPVVATADT 64 (162)
T ss_pred HHHHHHHHcCCCcEEEECCCc-----CcccHHHHHHHHHHHHCCCEEEcCcc
Confidence 567778889999999998853 23456677777888899999998864
No 27
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=33.69 E-value=40 Score=31.40 Aligned_cols=47 Identities=13% Similarity=0.257 Sum_probs=27.2
Q ss_pred HHHHHHHHhhccceeEecCCCCCCCcCCh----hhH----HHHHHHHHhhCCCEEEe
Q psy10341 20 GECVKFVRDLNVPLLVLGGGGLGQFSLTT----KGH----GECVKFVRDLNVPLLVL 68 (213)
Q Consensus 20 ~~~v~~vk~~~~p~i~L~gD~Lg~fnLs~----~g~----~~cv~~v~s~~~p~llL 68 (213)
.+.++.+.+|+.|+|.|---| ++..+. +|. ++|+.-+.+..+|++.+
T Consensus 141 ~R~m~lA~~f~lPIVtlvDTp--Ga~~G~~aE~~G~~~aia~~l~~~a~~~VP~IsV 195 (319)
T PRK05724 141 LRLMKMAEKFGLPIITFIDTP--GAYPGIGAEERGQSEAIARNLREMARLKVPIICT 195 (319)
T ss_pred HHHHHHHHHcCCCEEEEEeCC--CCCCCHHHHhccHHHHHHHHHHHHhCCCCCEEEE
Confidence 445556679999998763322 222333 244 34444445567998765
No 28
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=32.96 E-value=52 Score=30.59 Aligned_cols=47 Identities=15% Similarity=0.265 Sum_probs=26.9
Q ss_pred HHHHHHHHhhccceeEecCCCCCCCcCCh----hhHHH----HHHHHHhhCCCEEEe
Q psy10341 20 GECVKFVRDLNVPLLVLGGGGLGQFSLTT----KGHGE----CVKFVRDLNVPLLVL 68 (213)
Q Consensus 20 ~~~v~~vk~~~~p~i~L~gD~Lg~fnLs~----~g~~~----cv~~v~s~~~p~llL 68 (213)
.+.++.+.+|+.|+|.|---| ++..+. .|.++ ++.-+.+..+|++.+
T Consensus 141 ~R~m~lA~~f~iPvVtlvDTp--Ga~~g~~aE~~G~~~aia~~l~a~s~~~VP~IsV 195 (316)
T TIGR00513 141 LRLMKMAERFKMPIITFIDTP--GAYPGIGAEERGQSEAIARNLREMARLGVPVICT 195 (316)
T ss_pred HHHHHHHHHcCCCEEEEEECC--CCCCCHHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 445555679999998764332 233333 34444 443344567998764
No 29
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=32.25 E-value=1.2e+02 Score=25.58 Aligned_cols=50 Identities=16% Similarity=0.156 Sum_probs=30.6
Q ss_pred HHHHHHHHhhccceeEecCCCCCCCcCChhhH---HHHHHHHHhhCCCEEEecC
Q psy10341 20 GECVKFVRDLNVPLLVLGGGGLGQFSLTTKGH---GECVKFVRDLNVPLLVLGG 70 (213)
Q Consensus 20 ~~~v~~vk~~~~p~i~L~gD~Lg~fnLs~~g~---~~cv~~v~s~~~p~llLGG 70 (213)
..+++.+++.++.+|++.||=...- .....+ .++++.+.+.++|+.++-|
T Consensus 25 ~~i~~~~~~~~~d~iv~~GDl~~~~-~~~~~~~~~~~~~~~l~~~~~p~~~~~G 77 (214)
T cd07399 25 DWIVDNAEALNIAFVLHLGDIVDDG-DNDAEWEAADKAFARLDKAGIPYSVLAG 77 (214)
T ss_pred HHHHHHHHHcCCCEEEECCCccCCC-CCHHHHHHHHHHHHHHHHcCCcEEEECC
Confidence 4456666667788999999954322 212223 3455555444689888766
No 30
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=31.89 E-value=60 Score=29.21 Aligned_cols=72 Identities=14% Similarity=0.256 Sum_probs=46.0
Q ss_pred CCcccCCccchHHHHHHHHhhccc--------eeEe-cCCCCCCCcCChhhHHHHHHHHH-hh-CCCEEEecCCCCCCCc
Q psy10341 9 LGQFSLTTKGHGECVKFVRDLNVP--------LLVL-GGGGLGQFSLTTKGHGECVKFVR-DL-NVPLLVLGGGGYTLRN 77 (213)
Q Consensus 9 ~g~fNl~~~g~~~~v~~vk~~~~p--------~i~L-~gD~Lg~fnLs~~g~~~cv~~v~-s~-~~p~llLGGGGY~~~n 77 (213)
...+|+|++=-.++++++.+..+. .|.. ..++|-++|---.|..+|++... .. +.+++++|.||
T Consensus 63 ~~G~nVT~P~K~~~~~~lD~l~~~A~~iGAVNTv~~~~~g~l~G~NTD~~Gf~~~L~~~~~~~~~k~vlilGaGG----- 137 (283)
T PRK14027 63 FNGLNITHPYKQAVLPLLDEVSEQATQLGAVNTVVIDATGHTTGHNTDVSGFGRGMEEGLPNAKLDSVVQVGAGG----- 137 (283)
T ss_pred CCEEEECccCHHHHHHHhhhCCHHHHHhCCceEEEECCCCcEEEEcCCHHHHHHHHHhcCcCcCCCeEEEECCcH-----
Confidence 456788777444455444332222 2334 46678889999999999997522 22 56799999998
Q ss_pred cchhhhhh
Q psy10341 78 VARCWTYE 85 (213)
Q Consensus 78 vAR~Wt~~ 85 (213)
+||+=+|.
T Consensus 138 aarAi~~a 145 (283)
T PRK14027 138 VGNAVAYA 145 (283)
T ss_pred HHHHHHHH
Confidence 56665554
No 31
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=31.40 E-value=61 Score=29.06 Aligned_cols=64 Identities=20% Similarity=0.400 Sum_probs=34.7
Q ss_pred HHHHHHHHhhccceeEecCCCCCCCcCCh----hhH----HHHHHHHHhhCCCEEEe------cCCCCCCCccchhhhhh
Q psy10341 20 GECVKFVRDLNVPLLVLGGGGLGQFSLTT----KGH----GECVKFVRDLNVPLLVL------GGGGYTLRNVARCWTYE 85 (213)
Q Consensus 20 ~~~v~~vk~~~~p~i~L~gD~Lg~fnLs~----~g~----~~cv~~v~s~~~p~llL------GGGGY~~~nvAR~Wt~~ 85 (213)
.+.++.+.+|+.|+|.|---+ | +.++. .|. ++|+..+.+..+|++-+ |||.|.+-..-+.|+..
T Consensus 88 ~R~~~lA~~~~lPvV~lvDtp-G-a~~g~~aE~~G~~~~ia~~~~~~s~~~VP~IsVI~G~~~gGgA~a~~~~D~v~m~~ 165 (256)
T PRK12319 88 LRLMKQAEKFGRPVVTFINTA-G-AYPGVGAEERGQGEAIARNLMEMSDLKVPIIAIIIGEGGSGGALALAVADQVWMLE 165 (256)
T ss_pred HHHHHHHHHcCCCEEEEEECC-C-cCCCHhHHhccHHHHHHHHHHHHhCCCCCEEEEEeCCcCcHHHHHhhcCCEEEEec
Confidence 445555679999998753222 1 22232 344 34444445567998866 45556654333444433
No 32
>KOG3035|consensus
Probab=30.72 E-value=28 Score=31.22 Aligned_cols=45 Identities=33% Similarity=0.510 Sum_probs=38.6
Q ss_pred ceeEecCCCCCCCcCChhhHHHHHHHHHhhCCCEEEecCCCCCCC
Q psy10341 32 PLLVLGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGYTLR 76 (213)
Q Consensus 32 p~i~L~gD~Lg~fnLs~~g~~~cv~~v~s~~~p~llLGGGGY~~~ 76 (213)
|-|+|-||-+..|..+..|.+..+.-+-+-..-+++=|=+|||.|
T Consensus 7 p~i~LFGdSItq~sF~~gGwGA~Lad~y~RkaDv~~RGysGynSR 51 (245)
T KOG3035|consen 7 PRIVLFGDSITQFSFTDGGWGAALADLYSRKADVLLRGYSGYNSR 51 (245)
T ss_pred ccEEEecchhhhhcccCCchhHHHHHHHHHhhhhhhcccccchhH
Confidence 458899999999999999999888777666677888899999975
No 33
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=29.34 E-value=1.8e+02 Score=24.45 Aligned_cols=52 Identities=19% Similarity=0.270 Sum_probs=37.1
Q ss_pred HHHHHHHHhhccceeEecCCCCCCCcCChhhHHHHHHHHHhhC---CCEEEecCCCCCC
Q psy10341 20 GECVKFVRDLNVPLLVLGGGGLGQFSLTTKGHGECVKFVRDLN---VPLLVLGGGGYTL 75 (213)
Q Consensus 20 ~~~v~~vk~~~~p~i~L~gD~Lg~fnLs~~g~~~cv~~v~s~~---~p~llLGGGGY~~ 75 (213)
.+.++.+++.++.+|.++.= ..-+.....+.++.+++.. ...+++||...+.
T Consensus 123 ~~l~~~~~~~~~d~v~lS~~----~~~~~~~~~~~i~~lr~~~~~~~~~i~vGG~~~~~ 177 (201)
T cd02070 123 EEFVEAVKEHKPDILGLSAL----MTTTMGGMKEVIEALKEAGLRDKVKVMVGGAPVNQ 177 (201)
T ss_pred HHHHHHHHHcCCCEEEEecc----ccccHHHHHHHHHHHHHCCCCcCCeEEEECCcCCH
Confidence 66788888889999887762 1234566788888888754 3567888877764
No 34
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=29.22 E-value=18 Score=31.32 Aligned_cols=53 Identities=21% Similarity=0.312 Sum_probs=20.8
Q ss_pred chHHHHHHHH--hhccceeEecCCCCCCCcCChhhHHHHHHHHHhhCCCEEEecCCCC
Q psy10341 18 GHGECVKFVR--DLNVPLLVLGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGY 73 (213)
Q Consensus 18 g~~~~v~~vk--~~~~p~i~L~gD~Lg~fnLs~~g~~~cv~~v~s~~~p~llLGGGGY 73 (213)
.+.+.++.++ .-..|.++-..=+.+.=.+ .++..-+.+..-+.|+|+|.|=||
T Consensus 89 sle~a~~~I~~~~G~~P~~v~TsAr~~~~~i---s~~~lr~~l~~~~~P~LllFGTGw 143 (185)
T PF09936_consen 89 SLEEAIEDIEEEEGKRPLLVATSARKYPNTI---SYAELRRMLEEEDRPVLLLFGTGW 143 (185)
T ss_dssp SHHHHHHHHHHHHSS--EEEE--SS--SS-B----HHHHHHHHHH--S-EEEEE--TT
T ss_pred hHHHHHHHHHHHhCCCCEEEEecCcCCCCCc---CHHHHHHHHhccCCeEEEEecCCC
Confidence 3355566553 3355665533333222222 355555555556788888844433
No 35
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=29.04 E-value=86 Score=24.72 Aligned_cols=43 Identities=14% Similarity=0.350 Sum_probs=27.1
Q ss_pred HHHhhccceeEecCCCCCCCcCChhhHHHHHHHHHhhCCCEEEecC
Q psy10341 25 FVRDLNVPLLVLGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGG 70 (213)
Q Consensus 25 ~vk~~~~p~i~L~gD~Lg~fnLs~~g~~~cv~~v~s~~~p~llLGG 70 (213)
.+++..+.+|+++||= .... +...+ ..++.+++.++|+.++-|
T Consensus 18 ~~~~~~~D~vv~~GDl-~~~~-~~~~~-~~~~~l~~~~~p~~~v~G 60 (188)
T cd07392 18 ILKAEEADAVIVAGDI-TNFG-GKEAA-VEINLLLAIGVPVLAVPG 60 (188)
T ss_pred HhhccCCCEEEECCCc-cCcC-CHHHH-HHHHHHHhcCCCEEEEcC
Confidence 4455677789999992 2211 11122 233777778899999877
No 36
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=29.02 E-value=1.8e+02 Score=22.19 Aligned_cols=48 Identities=23% Similarity=0.344 Sum_probs=32.1
Q ss_pred HHHHHHHhhccceeEecCCCCCCCcCChhhHHHHHHHHHhhCC---CEEEecC
Q psy10341 21 ECVKFVRDLNVPLLVLGGGGLGQFSLTTKGHGECVKFVRDLNV---PLLVLGG 70 (213)
Q Consensus 21 ~~v~~vk~~~~p~i~L~gD~Lg~fnLs~~g~~~cv~~v~s~~~---p~llLGG 70 (213)
.+++.+.+.++.++++.||=.... +...+....+++..+.. |+.++-|
T Consensus 26 ~~~~~~~~~~~d~vi~~GDl~~~~--~~~~~~~~~~~~~~l~~~~~~~~~v~G 76 (144)
T cd07400 26 RLLAEIKALDPDLVVITGDLTQRG--LPEEFEEAREFLDALPAPLEPVLVVPG 76 (144)
T ss_pred HHHHHHhccCCCEEEECCCCCCCC--CHHHHHHHHHHHHHccccCCcEEEeCC
Confidence 367777788888999999953322 12345566667766544 8877766
No 37
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=28.31 E-value=1.1e+02 Score=23.00 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=19.9
Q ss_pred CccchHHHHHHHHhhccceeEecCC
Q psy10341 15 TTKGHGECVKFVRDLNVPLLVLGGG 39 (213)
Q Consensus 15 ~~~g~~~~v~~vk~~~~p~i~L~gD 39 (213)
+++|..++++.+++-+.|+++++..
T Consensus 15 ~ipga~e~l~~L~~~g~~~~~lTNn 39 (101)
T PF13344_consen 15 PIPGAVEALDALRERGKPVVFLTNN 39 (101)
T ss_dssp E-TTHHHHHHHHHHTTSEEEEEES-
T ss_pred cCcCHHHHHHHHHHcCCCEEEEeCC
Confidence 5668899999999999999887765
No 38
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=27.98 E-value=2e+02 Score=22.15 Aligned_cols=46 Identities=13% Similarity=0.379 Sum_probs=37.5
Q ss_pred chHHHHHHHHhhccceeEecCCCCCCCcCChhhHHHHHHHHHhhCCCEEEec
Q psy10341 18 GHGECVKFVRDLNVPLLVLGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLG 69 (213)
Q Consensus 18 g~~~~v~~vk~~~~p~i~L~gD~Lg~fnLs~~g~~~cv~~v~s~~~p~llLG 69 (213)
|...+.+-+|+-...+++++.| .+..+..+...+-+..++|++..|
T Consensus 21 G~~~v~~aik~gk~~lVI~A~D------~s~~~kkki~~~~~~~~vp~~~~~ 66 (104)
T PRK05583 21 GYNKCEEAIKKKKVYLIIISND------ISENSKNKFKNYCNKYNIPYIEGY 66 (104)
T ss_pred cHHHHHHHHHcCCceEEEEeCC------CCHhHHHHHHHHHHHcCCCEEEec
Confidence 5667888898888889999999 677777777777777899988764
No 39
>PF07981 Plasmod_MYXSPDY: Plasmodium repeat_MYXSPDY; InterPro: IPR012598 This repeat is found in two hypothetical Plasmodium proteins.
Probab=26.82 E-value=24 Score=19.22 Aligned_cols=11 Identities=45% Similarity=1.008 Sum_probs=8.0
Q ss_pred cCCCCCCCCCC
Q psy10341 106 FFQPDYNLHPE 116 (213)
Q Consensus 106 ~y~pdy~L~~~ 116 (213)
|+.|||+|..-
T Consensus 2 Y~SPdytL~~v 12 (17)
T PF07981_consen 2 YFSPDYTLRLV 12 (17)
T ss_pred ccCCCceEEEE
Confidence 56899987643
No 40
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=26.77 E-value=2e+02 Score=24.97 Aligned_cols=50 Identities=16% Similarity=0.177 Sum_probs=35.8
Q ss_pred hHHHHHHHHhh--ccceeEecCCCCCCCcCChhhHHHHHHHHHhhCCCEEEecC
Q psy10341 19 HGECVKFVRDL--NVPLLVLGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGG 70 (213)
Q Consensus 19 ~~~~v~~vk~~--~~p~i~L~gD~Lg~fnLs~~g~~~cv~~v~s~~~p~llLGG 70 (213)
...+++.+++. .+.+|+++||=.- +-+.+.+.++.+.+..+++|+.++=|
T Consensus 42 l~~~i~~i~~~~~~~D~vvitGDl~~--~~~~~~~~~~~~~l~~l~~Pv~~v~G 93 (275)
T PRK11148 42 YQAVLEAIRAQQHEFDLIVATGDLAQ--DHSSEAYQHFAEGIAPLRKPCVWLPG 93 (275)
T ss_pred HHHHHHHHHhhCCCCCEEEECCCCCC--CCCHHHHHHHHHHHhhcCCcEEEeCC
Confidence 35566666544 4668999999532 22456788888888888999988876
No 41
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=26.67 E-value=71 Score=28.70 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=16.3
Q ss_pred ChhhHHHHHHHHHhhCCCEEEecCC
Q psy10341 47 TTKGHGECVKFVRDLNVPLLVLGGG 71 (213)
Q Consensus 47 s~~g~~~cv~~v~s~~~p~llLGGG 71 (213)
|..-...++++.+..++|+.++|||
T Consensus 21 s~edl~~~l~~a~~~~~p~~vlGgG 45 (284)
T TIGR00179 21 SIEQLVNVLDNAKEEDQPLLILGEG 45 (284)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecc
Confidence 3455666666666667777777664
No 42
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=26.52 E-value=2e+02 Score=23.53 Aligned_cols=50 Identities=18% Similarity=0.123 Sum_probs=29.3
Q ss_pred HHHHHHHhhccceeEecCCCCCCCcCC---hhhHHHHHHHHHhhCCCEEEecC
Q psy10341 21 ECVKFVRDLNVPLLVLGGGGLGQFSLT---TKGHGECVKFVRDLNVPLLVLGG 70 (213)
Q Consensus 21 ~~v~~vk~~~~p~i~L~gD~Lg~fnLs---~~g~~~cv~~v~s~~~p~llLGG 70 (213)
.+.+.++..++.++++.||=.....-. ..-..+.++.+.+.++|+.++-|
T Consensus 32 ~~~~~~~~~~~d~vv~~GDl~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~G 84 (199)
T cd07383 32 FIERVLDAEKPDLVVLTGDLITGENTNDNSTSALDKAVSPMIDRKIPWAATFG 84 (199)
T ss_pred HHHHHHhhcCCCEEEECCccccCCCCchHHHHHHHHHHHHHHHcCCCEEEECc
Confidence 344455677888999999965444332 12223333444445788887655
No 43
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=26.45 E-value=77 Score=26.48 Aligned_cols=39 Identities=10% Similarity=0.249 Sum_probs=25.6
Q ss_pred ccceeEecCCCCCCCcCChhhHHHHHHHHHhhCCCE--EEecCCCCC
Q psy10341 30 NVPLLVLGGGGLGQFSLTTKGHGECVKFVRDLNVPL--LVLGGGGYT 74 (213)
Q Consensus 30 ~~p~i~L~gD~Lg~fnLs~~g~~~cv~~v~s~~~p~--llLGGGGY~ 74 (213)
..|.+.+.|| |+|.++......++++ ++|+ +|+==|||.
T Consensus 75 ~~~vv~i~GD--G~f~m~~~eL~Ta~~~----~lpviivV~NN~~yg 115 (202)
T cd02006 75 DRQVVALSGD--YDFQFMIEELAVGAQH----RIPYIHVLVNNAYLG 115 (202)
T ss_pred CCeEEEEEeC--hHhhccHHHHHHHHHh----CCCeEEEEEeCchHH
Confidence 3468899999 7999997555554443 5554 455555565
No 44
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=26.08 E-value=70 Score=29.18 Aligned_cols=24 Identities=25% Similarity=0.645 Sum_probs=19.5
Q ss_pred ChhhHHHHHHHHHhhCCCEEEecCC
Q psy10341 47 TTKGHGECVKFVRDLNVPLLVLGGG 71 (213)
Q Consensus 47 s~~g~~~cv~~v~s~~~p~llLGGG 71 (213)
|.+....++++.+. ++|++++|||
T Consensus 42 s~eel~~~~~~~~~-~~p~~vlG~G 65 (297)
T PRK14653 42 STNGFIETINLLKE-GIEVKILGNG 65 (297)
T ss_pred CHHHHHHHHHHHhc-CCCEEEEcCC
Confidence 55667788888888 9999999876
No 45
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=25.88 E-value=66 Score=33.40 Aligned_cols=67 Identities=16% Similarity=0.358 Sum_probs=35.6
Q ss_pred HHHHHHHHhhccceeEecCCCCCCC---cCChhhHHH----HHHHHHhhCCCEEEe------cCCCCCCCccchhhhhhh
Q psy10341 20 GECVKFVRDLNVPLLVLGGGGLGQF---SLTTKGHGE----CVKFVRDLNVPLLVL------GGGGYTLRNVARCWTYET 86 (213)
Q Consensus 20 ~~~v~~vk~~~~p~i~L~gD~Lg~f---nLs~~g~~~----cv~~v~s~~~p~llL------GGGGY~~~nvAR~Wt~~t 86 (213)
.+.++.+.+|+.|+|.|---+ |.+ .-.-.|.++ |+.-+.+..+|++.+ |||.|.+-..-+.|+...
T Consensus 232 lRlmkLAekfgLPIVtLVDTp-GA~pG~~AEe~Gq~~aIArnl~amasl~VP~ISVViGeggSGGAlA~g~aD~VlMle~ 310 (762)
T PLN03229 232 LRMMYYADHHGFPIVTFIDTP-GAYADLKSEELGQGEAIAHNLRTMFGLKVPIVSIVIGEGGSGGALAIGCANKLLMLEN 310 (762)
T ss_pred HHHHHHHHHcCCCEEEEEECC-CcCCCchhHHHhHHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhcCCEEEEecC
Confidence 445555679999998753222 111 112234444 444444567998876 455565544444554444
Q ss_pred h
Q psy10341 87 S 87 (213)
Q Consensus 87 ~ 87 (213)
+
T Consensus 311 A 311 (762)
T PLN03229 311 A 311 (762)
T ss_pred C
Confidence 3
No 46
>PHA02546 47 endonuclease subunit; Provisional
Probab=25.77 E-value=2e+02 Score=26.19 Aligned_cols=53 Identities=11% Similarity=0.188 Sum_probs=35.2
Q ss_pred chHHHHHHHHhhccceeEecCCCCCCCc-CChhhHHHH----HHHHHhhCCCEEEecC
Q psy10341 18 GHGECVKFVRDLNVPLLVLGGGGLGQFS-LTTKGHGEC----VKFVRDLNVPLLVLGG 70 (213)
Q Consensus 18 g~~~~v~~vk~~~~p~i~L~gD~Lg~fn-Ls~~g~~~c----v~~v~s~~~p~llLGG 70 (213)
...++++.+++.++.+++++||=+-... .+..-.... .+.++..++|++++-|
T Consensus 27 ~l~~ii~~a~~~~vD~VliaGDlfD~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~I~G 84 (340)
T PHA02546 27 FIKQAIEYSKAHGITTWIQLGDTFDVRKAITQNTMNFVREKIFDLLKEAGITLHVLVG 84 (340)
T ss_pred HHHHHHHHHHHcCCCEEEECCcccCCCCCCCHHHHHHHHHHHHHHHHHCCCeEEEEcc
Confidence 4477888889999999999999765542 222222222 3344455799998876
No 47
>PLN02564 6-phosphofructokinase
Probab=25.76 E-value=1.7e+02 Score=28.86 Aligned_cols=54 Identities=19% Similarity=0.188 Sum_probs=26.3
Q ss_pred hHHHHHHHHHhhCCCEEEecCCCCCCCccchhhhhhh--h-----hhccccCCCCCCCCcc
Q psy10341 50 GHGECVKFVRDLNVPLLVLGGGGYTLRNVARCWTYET--S-----LLVNEEISNDIPDSLY 103 (213)
Q Consensus 50 g~~~cv~~v~s~~~p~llLGGGGY~~~nvAR~Wt~~t--~-----~~~~~~ip~~iP~~~y 103 (213)
...++++.+++.++-.|+.=||-=+.+...+.+.+.. + +-+-..|.++|+..+|
T Consensus 164 ~~~~iv~~L~~~~Id~LivIGGDGS~~gA~~L~e~~~~~g~~i~VIGIPKTIDNDI~~tD~ 224 (484)
T PLN02564 164 DTSKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEIRRRGLKVAVAGIPKTIDNDIPVIDK 224 (484)
T ss_pred hHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEEecccccCCCcCccc
Confidence 4556666666666655555444444444444443211 0 1123446666665443
No 48
>PF01467 CTP_transf_2: Cytidylyltransferase; InterPro: IPR004820 This family includes []: Cholinephosphate cytidyltransferase (P49585 from SWISSPROT). Glycerol-3-phosphate cytidyltransferase (P27623 from SWISSPROT). CTP:cholinephosphate cytidylyltransferase (CCT) is a key regulatory enzyme in phosphatidylcholine biosynthesis that catalyzes the formation of CDP-choline. A comparison of the catalytic domains of CCTs from a wide variety of organisms reveals a large number of completely conserved residues. There may be a role for the conserved HXGH sequence in catalysis. The membrane-binding domain in rat CCT has been defined, and it has been suggested that lipids may play a role in inactivating the enzyme. A phosphorylation domain has been described [].; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1O6B_A 1H1T_A 1B6T_A 1GN8_A 1QJC_A 3ELB_A 3NBK_A 3NBA_A 1TFU_A 3LCJ_A ....
Probab=25.36 E-value=45 Score=25.27 Aligned_cols=30 Identities=23% Similarity=0.385 Sum_probs=19.5
Q ss_pred CcccCCccchHHHHHHHHhhccc--eeEecCC
Q psy10341 10 GQFSLTTKGHGECVKFVRDLNVP--LLVLGGG 39 (213)
Q Consensus 10 g~fNl~~~g~~~~v~~vk~~~~p--~i~L~gD 39 (213)
|+||.+..||-.+++.+++.... ++++.+|
T Consensus 4 GsFdP~H~GH~~~l~~a~~~~~~~~vi~v~~~ 35 (157)
T PF01467_consen 4 GSFDPPHNGHLNLLREARELFDEDLVIVVPSD 35 (157)
T ss_dssp E--TT--HHHHHHHHHHHHHSSESEEEEEEEE
T ss_pred eEcCcccHHHHHHHHHHHHhcccccccccccc
Confidence 78999999999999998766665 5555554
No 49
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=25.33 E-value=82 Score=30.63 Aligned_cols=25 Identities=12% Similarity=0.098 Sum_probs=17.8
Q ss_pred cCcHHHHHHHHHHHHhhcccccCCC
Q psy10341 124 ANSKQYLELITKTVYDNLKMVAFSP 148 (213)
Q Consensus 124 ~N~~~~le~i~~~i~~nl~~~~~aP 148 (213)
.+.....+.|+..|.+.|..+..-|
T Consensus 344 ~d~~~~~~~l~~~i~~~l~~L~~~~ 368 (431)
T PLN03230 344 SDPLQASKNIKEVILRHMKELMKMD 368 (431)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHCCC
Confidence 3455678888888888887776544
No 50
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=24.80 E-value=77 Score=27.72 Aligned_cols=64 Identities=20% Similarity=0.227 Sum_probs=40.0
Q ss_pred CCcccCCccchHHHHHHHH-------hhccc-eeEecCCCCCCCcCChhhHHHHHHHH-Hhh-CCCEEEecCCC
Q psy10341 9 LGQFSLTTKGHGECVKFVR-------DLNVP-LLVLGGGGLGQFSLTTKGHGECVKFV-RDL-NVPLLVLGGGG 72 (213)
Q Consensus 9 ~g~fNl~~~g~~~~v~~vk-------~~~~p-~i~L~gD~Lg~fnLs~~g~~~cv~~v-~s~-~~p~llLGGGG 72 (213)
...+|+|++=-..+++++. ..+.- .|...+++|-++|-.-.|..++++.. ... +..++++|.||
T Consensus 54 ~~G~nVT~P~K~~~~~~~d~~~~~A~~~gavNti~~~~g~l~g~NTD~~G~~~~l~~~~~~~~~k~vliiGaGg 127 (270)
T TIGR00507 54 FKGANVTSPFKEEAFQFLDEIDERAKLAGAVNTLKLEDGKLVGYNTDGIGLVSDLERLIPLRPNQRVLIIGAGG 127 (270)
T ss_pred CCEEEECcCCHHHHHHHhhhCCHHHHHhCCceEEEeeCCEEEEEcCCHHHHHHHHHhcCCCccCCEEEEEcCcH
Confidence 4577888773333333332 22111 24467778888998888888887642 112 56789999886
No 51
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=24.71 E-value=77 Score=31.67 Aligned_cols=25 Identities=24% Similarity=0.569 Sum_probs=18.8
Q ss_pred hhhHHHHHHHHHhhCCCEEEecCCC
Q psy10341 48 TKGHGECVKFVRDLNVPLLVLGGGG 72 (213)
Q Consensus 48 ~~g~~~cv~~v~s~~~p~llLGGGG 72 (213)
.+-.+..+..+|+...|+|+.|||=
T Consensus 216 ~~eL~~A~~lik~ak~PlIvaGGGv 240 (617)
T COG3962 216 ERELADAAALIKSAKKPLIVAGGGV 240 (617)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCce
Confidence 3456778888888888888888773
No 52
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=24.63 E-value=80 Score=28.60 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=13.5
Q ss_pred hhhHHHHHHHHHhhCCCEEEecCC
Q psy10341 48 TKGHGECVKFVRDLNVPLLVLGGG 71 (213)
Q Consensus 48 ~~g~~~cv~~v~s~~~p~llLGGG 71 (213)
......++++.+.-++|++++|||
T Consensus 30 ~~dl~~~l~~~~~~~ip~~vlG~G 53 (295)
T PRK14649 30 PDEAIAAAAWAEQRQLPLFWLGGG 53 (295)
T ss_pred HHHHHHHHHHHHHCCCCEEEEecc
Confidence 344455555555556666666654
No 53
>COG2047 Uncharacterized protein (ATP-grasp superfamily) [General function prediction only]
Probab=24.60 E-value=74 Score=28.75 Aligned_cols=39 Identities=21% Similarity=0.543 Sum_probs=23.8
Q ss_pred eeEecCCCCCCCcCChhhH----HHHHHHHHhhCCCEEEecCCCCCC
Q psy10341 33 LLVLGGGGLGQFSLTTKGH----GECVKFVRDLNVPLLVLGGGGYTL 75 (213)
Q Consensus 33 ~i~L~gD~Lg~fnLs~~g~----~~cv~~v~s~~~p~llLGGGGY~~ 75 (213)
+|+|.||--+ .|..|| .+.+++.+.|+.+++..-| ||..
T Consensus 86 liil~Gd~Q~---~~~~gqyel~~~~Ld~a~e~g~~~IyTLG-Gy~v 128 (258)
T COG2047 86 LIILVGDTQA---TSSEGQYELTGKILDIAKEFGARMIYTLG-GYGV 128 (258)
T ss_pred EEEEeccccc---cCcchhHHHHHHHHHHHHHcCCcEEEEec-Cccc
Confidence 4567777433 344444 3455666778888888764 4653
No 54
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=24.57 E-value=82 Score=26.27 Aligned_cols=39 Identities=13% Similarity=0.388 Sum_probs=24.9
Q ss_pred ccceeEecCCCCCCCcCChhhHHHHHHHHHhhCCCEEEe--cCCCCC
Q psy10341 30 NVPLLVLGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVL--GGGGYT 74 (213)
Q Consensus 30 ~~p~i~L~gD~Lg~fnLs~~g~~~cv~~v~s~~~p~llL--GGGGY~ 74 (213)
..|.+.+.|| |.|.++......+++ .++|++++ ==+||.
T Consensus 71 ~r~vv~i~GD--G~f~m~~~eL~Ta~~----~~lpvi~vV~NN~~yg 111 (196)
T cd02013 71 DRPVVAIAGD--GAWGMSMMEIMTAVR----HKLPVTAVVFRNRQWG 111 (196)
T ss_pred CCcEEEEEcc--hHHhccHHHHHHHHH----hCCCeEEEEEECchhH
Confidence 4578999999 689888755555443 35665544 344454
No 55
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=24.33 E-value=2.4e+02 Score=19.84 Aligned_cols=47 Identities=13% Similarity=0.181 Sum_probs=29.9
Q ss_pred HHHHhhccceeEecCCCCCCCcCChhhHHHHHHHHHhhCCCEEEecC
Q psy10341 24 KFVRDLNVPLLVLGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGG 70 (213)
Q Consensus 24 ~~vk~~~~p~i~L~gD~Lg~fnLs~~g~~~cv~~v~s~~~p~llLGG 70 (213)
...++.++.++++.||=+.....+..-...-....+....|++++-|
T Consensus 20 ~~~~~~~~~~vi~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 66 (131)
T cd00838 20 ALAAAEKPDFVLVLGDLVGDGPDPEEVLAAALALLLLLGIPVYVVPG 66 (131)
T ss_pred HHhcccCCCEEEECCcccCCCCCchHHHHHHHHHhhcCCCCEEEeCC
Confidence 44567788889999996554444332221113455667889998877
No 56
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=24.32 E-value=75 Score=28.03 Aligned_cols=66 Identities=23% Similarity=0.208 Sum_probs=41.0
Q ss_pred CCcccCCccchHHHHHHHHhhccc--------eeEecCCCCCCCcCChhhHHHHHHHHH--hh-CCCEEEecCCCCC
Q psy10341 9 LGQFSLTTKGHGECVKFVRDLNVP--------LLVLGGGGLGQFSLTTKGHGECVKFVR--DL-NVPLLVLGGGGYT 74 (213)
Q Consensus 9 ~g~fNl~~~g~~~~v~~vk~~~~p--------~i~L~gD~Lg~fnLs~~g~~~cv~~v~--s~-~~p~llLGGGGY~ 74 (213)
...+|+|++=-..+++++....+. .|.-.+++|-++|-.-.|..++++... .+ +..++|+|.||-.
T Consensus 59 ~~G~nVT~P~K~~~~~~~d~~~~~A~~igavNtv~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~k~vlVlGaGg~a 135 (278)
T PRK00258 59 GRGANVTVPFKEAAFALADELSERARLIGAVNTLVLEDGRLIGDNTDGIGFVRALEERLGVDLKGKRILILGAGGAA 135 (278)
T ss_pred CCEEEECcCCHHHHHHHhhcCCHHHHHhCCceEEEeeCCEEEEEcccHHHHHHHHHhccCCCCCCCEEEEEcCcHHH
Confidence 567788877444444444322111 234456678888988888888887422 22 4678999987744
No 57
>PRK04531 acetylglutamate kinase; Provisional
Probab=24.26 E-value=1.4e+02 Score=28.34 Aligned_cols=56 Identities=16% Similarity=0.392 Sum_probs=37.8
Q ss_pred HHHHHHHHhhcc----ce--eEecCCCCCCCcCChhhHHHHHHHHHhhCCCEEEecCCCCCCCcc
Q psy10341 20 GECVKFVRDLNV----PL--LVLGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGYTLRNV 78 (213)
Q Consensus 20 ~~~v~~vk~~~~----p~--i~L~gD~Lg~fnLs~~g~~~cv~~v~s~~~p~llLGGGGY~~~nv 78 (213)
-+..++++.|.- .+ |-++|.-|.. .......++.++.+.+++.+++=|||..+...
T Consensus 21 ~e~~~~l~~F~~~~~~~~~VIKiGG~~l~~---~~~~l~~dla~L~~~G~~~VlVHGggpqI~~~ 82 (398)
T PRK04531 21 KEISQYLKRFSQLDAERFAVIKVGGAVLRD---DLEALASSLSFLQEVGLTPIVVHGAGPQLDAE 82 (398)
T ss_pred hhhHHHHHHHhCcCCCcEEEEEEChHHhhc---CHHHHHHHHHHHHHCCCcEEEEECCCHHHHHH
Confidence 345667777764 22 4488876542 24788999999999988777776667665433
No 58
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=24.26 E-value=84 Score=28.60 Aligned_cols=25 Identities=40% Similarity=0.737 Sum_probs=17.7
Q ss_pred ChhhHHHHHHHHHhhCCCEEEecCC
Q psy10341 47 TTKGHGECVKFVRDLNVPLLVLGGG 71 (213)
Q Consensus 47 s~~g~~~cv~~v~s~~~p~llLGGG 71 (213)
|.+...+++++.+..++|++++|||
T Consensus 44 ~~edl~~~v~~a~~~~ip~~vlGgG 68 (302)
T PRK14652 44 DPDALSALLRAVRELGVPLSILGGG 68 (302)
T ss_pred CHHHHHHHHHHHHHCCCcEEEEcCC
Confidence 4555666777777778888888765
No 59
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=23.94 E-value=86 Score=28.54 Aligned_cols=25 Identities=28% Similarity=0.583 Sum_probs=19.4
Q ss_pred ChhhHHHHHHHHHhhCCCEEEecCC
Q psy10341 47 TTKGHGECVKFVRDLNVPLLVLGGG 71 (213)
Q Consensus 47 s~~g~~~cv~~v~s~~~p~llLGGG 71 (213)
|.....+++++.+..++|++++|||
T Consensus 45 ~~edv~~~l~~a~~~~ip~~v~GgG 69 (305)
T PRK12436 45 NYDEIQEVIKYANKYNIPVTFLGNG 69 (305)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 4556777888888889999998875
No 60
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=23.74 E-value=79 Score=28.21 Aligned_cols=65 Identities=22% Similarity=0.286 Sum_probs=39.9
Q ss_pred CCcccCCccchHHHHHHHHhhccc--------eeEecCCCCCCCcCChhhHHHHHHHHH-hh-CCCEEEecCCCC
Q psy10341 9 LGQFSLTTKGHGECVKFVRDLNVP--------LLVLGGGGLGQFSLTTKGHGECVKFVR-DL-NVPLLVLGGGGY 73 (213)
Q Consensus 9 ~g~fNl~~~g~~~~v~~vk~~~~p--------~i~L~gD~Lg~fnLs~~g~~~cv~~v~-s~-~~p~llLGGGGY 73 (213)
...+|+|++=-..+++++-+..+. .|....++|-++|-.-.|..++++... .+ +..++++|+||=
T Consensus 63 ~~G~nVT~P~K~~v~~~ld~~~~~A~~iGavNTi~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~k~vlI~GAGGa 137 (289)
T PRK12548 63 MRGANVTMPCKSEAAKYMDELSPAARIIGAVNTIVNDDGKLTGHITDGLGFVRNLREHGVDVKGKKLTVIGAGGA 137 (289)
T ss_pred CCEEEECccCHHHHHHHhhcCCHHHHHhCceeEEEeECCEEEEEecCHHHHHHHHHhcCCCcCCCEEEEECCcHH
Confidence 456788887444555444322211 244455667788988888888886422 23 457889999763
No 61
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=23.62 E-value=3.2e+02 Score=20.44 Aligned_cols=51 Identities=16% Similarity=0.175 Sum_probs=33.9
Q ss_pred HHHHHHHHhhccceeEecCCCCCCCcCChhhHHHHHHHHHhhC--CCEEEecCCCCC
Q psy10341 20 GECVKFVRDLNVPLLVLGGGGLGQFSLTTKGHGECVKFVRDLN--VPLLVLGGGGYT 74 (213)
Q Consensus 20 ~~~v~~vk~~~~p~i~L~gD~Lg~fnLs~~g~~~cv~~v~s~~--~p~llLGGGGY~ 74 (213)
.+.++.+.+.++.++.++.= ..-+.....+.++.+++.. .+.+++||...+
T Consensus 40 ~~l~~~~~~~~pdvV~iS~~----~~~~~~~~~~~i~~l~~~~~~~~~i~vGG~~~~ 92 (119)
T cd02067 40 EEIVEAAKEEDADAIGLSGL----LTTHMTLMKEVIEELKEAGLDDIPVLVGGAIVT 92 (119)
T ss_pred HHHHHHHHHcCCCEEEEecc----ccccHHHHHHHHHHHHHcCCCCCeEEEECCCCC
Confidence 56777788888888888762 1123455567777777753 366777876555
No 62
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=23.43 E-value=2.2e+02 Score=24.44 Aligned_cols=52 Identities=12% Similarity=0.155 Sum_probs=35.5
Q ss_pred HHHHHHHHhhccceeEecCCCCCCCcCChhhHHHHHHHHHhhC-CCEEEecCCCCCC
Q psy10341 20 GECVKFVRDLNVPLLVLGGGGLGQFSLTTKGHGECVKFVRDLN-VPLLVLGGGGYTL 75 (213)
Q Consensus 20 ~~~v~~vk~~~~p~i~L~gD~Lg~fnLs~~g~~~cv~~v~s~~-~p~llLGGGGY~~ 75 (213)
.+.++.+++.++.++.|+. -..-+.....+.++.+++.+ .+.+++||.++|.
T Consensus 129 e~~v~~~~~~~~~~V~lS~----~~~~~~~~~~~~i~~L~~~~~~~~i~vGG~~~~~ 181 (213)
T cd02069 129 EKILEAAKEHKADIIGLSG----LLVPSLDEMVEVAEEMNRRGIKIPLLIGGAATSR 181 (213)
T ss_pred HHHHHHHHHcCCCEEEEcc----chhccHHHHHHHHHHHHhcCCCCeEEEEChhcCH
Confidence 5577778888888888776 12344566677777777643 3557778877774
No 63
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=23.04 E-value=4.9e+02 Score=22.40 Aligned_cols=98 Identities=16% Similarity=0.187 Sum_probs=53.6
Q ss_pred chHHHHHHH-HhhccceeEecCCCCCCCcCChhhHHHHHHHHHhhCCCEEEecCCCCCCCccchhhhhhhhhhccccCCC
Q psy10341 18 GHGECVKFV-RDLNVPLLVLGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGYTLRNVARCWTYETSLLVNEEISN 96 (213)
Q Consensus 18 g~~~~v~~v-k~~~~p~i~L~gD~Lg~fnLs~~g~~~cv~~v~s~~~p~llLGGGGY~~~nvAR~Wt~~t~~~~~~~ip~ 96 (213)
|+.+-++++ +++..|+++++.|= .++...-....+++..+..+|+..+=.=|+ +.+|..+=.
T Consensus 73 GYv~Dl~~al~~l~~P~lvvsaDL---p~l~~~~i~~vi~~~~~~~~p~~~~~~~G~--------------v~~Glni~~ 135 (177)
T COG2266 73 GYVEDLRFALESLGTPILVVSADL---PFLNPSIIDSVIDAAASVEVPIVTVVKAGR--------------VPVGLNIVG 135 (177)
T ss_pred ChHHHHHHHHHhcCCceEEEeccc---ccCCHHHHHHHHHHHhhccCceeEeeccCc--------------cceeeEeec
Confidence 666666665 77788999999992 234444444455555544566555422222 334443322
Q ss_pred CCCCCcccccCCCCCCCCCCCCCcccccCcHHHHHHHHHHHHhhcc
Q psy10341 97 DIPDSLYKDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLK 142 (213)
Q Consensus 97 ~iP~~~y~~~y~pdy~L~~~~~~~~~n~N~~~~le~i~~~i~~nl~ 142 (213)
..++..|++ +..+....|=||.+.+++..+ ++....
T Consensus 136 ~~~~~~~~~---------i~~~~la~NVNT~eDl~~a~~-ll~~~~ 171 (177)
T COG2266 136 GKQEEEILE---------IDNPELAVNVNTPEDLKKAER-LLRTSE 171 (177)
T ss_pred CCCcceeEE---------eeccceeEecCCHHHHHHHHH-HHhhcc
Confidence 233333332 222345677889999998854 443333
No 64
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=22.87 E-value=87 Score=29.20 Aligned_cols=21 Identities=43% Similarity=0.648 Sum_probs=10.2
Q ss_pred HHHHHHHHHhhCCCEEEecCC
Q psy10341 51 HGECVKFVRDLNVPLLVLGGG 71 (213)
Q Consensus 51 ~~~cv~~v~s~~~p~llLGGG 71 (213)
....+++.+..++|+++||||
T Consensus 33 l~~~~~~~~~~~~p~~vlG~G 53 (334)
T PRK00046 33 LLEALADARAAGLPVLVLGGG 53 (334)
T ss_pred HHHHHHHHHHcCCCEEEEece
Confidence 334444444445565555554
No 65
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=22.64 E-value=1.3e+02 Score=24.25 Aligned_cols=33 Identities=18% Similarity=0.379 Sum_probs=21.4
Q ss_pred ccceeEecCCCCCCCcCChhhHHHHHHHHHhhCCCEEEe
Q psy10341 30 NVPLLVLGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVL 68 (213)
Q Consensus 30 ~~p~i~L~gD~Lg~fnLs~~g~~~cv~~v~s~~~p~llL 68 (213)
..+.+.+.|| |.|.++......+++ .++|++++
T Consensus 67 ~~~vv~i~GD--G~f~~~~~el~ta~~----~~~p~~~i 99 (178)
T cd02002 67 DRKVVAIIGD--GSFMYTIQALWTAAR----YGLPVTVV 99 (178)
T ss_pred CCeEEEEEcC--chhhccHHHHHHHHH----hCCCeEEE
Confidence 4567889999 688888654443333 36666654
No 66
>TIGR03637 cas1_YPEST CRISPR-associated endonuclease Cas1, YPEST subtype. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.
Probab=22.58 E-value=1e+02 Score=28.34 Aligned_cols=33 Identities=27% Similarity=0.441 Sum_probs=25.9
Q ss_pred eEecCCCCCCCcCChhhHHHHHHHHHhhCCCEEEecCCCCC
Q psy10341 34 LVLGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGYT 74 (213)
Q Consensus 34 i~L~gD~Lg~fnLs~~g~~~cv~~v~s~~~p~llLGGGGY~ 74 (213)
|+|.|+ .++ -..+++++..-++|+.++|+||+-
T Consensus 47 I~l~g~------vsi--t~~al~~L~~~gI~V~f~~~~G~~ 79 (307)
T TIGR03637 47 LLLGTG------TSI--TQAAMRELAKAGVMVGFCGGGGTP 79 (307)
T ss_pred EEEeCC------Cch--hHHHHHHHHHCCCEEEEECCCCEe
Confidence 556664 343 467888998999999999999974
No 67
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=22.58 E-value=3.2e+02 Score=20.66 Aligned_cols=46 Identities=9% Similarity=0.169 Sum_probs=35.4
Q ss_pred chHHHHHHHHhhccceeEecCCCCCCCcCChhhHHHHHHHHHhhCCCEEEec
Q psy10341 18 GHGECVKFVRDLNVPLLVLGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLG 69 (213)
Q Consensus 18 g~~~~v~~vk~~~~p~i~L~gD~Lg~fnLs~~g~~~cv~~v~s~~~p~llLG 69 (213)
|..++.+-+++-...+++++.| .+..-..+...+-...++|++...
T Consensus 20 G~~~v~kai~~gkaklViiA~D------~~~~~~~~i~~~c~~~~Ip~~~~~ 65 (99)
T PRK01018 20 GSKRTIKAIKLGKAKLVIVASN------CPKDIKEDIEYYAKLSGIPVYEYE 65 (99)
T ss_pred cHHHHHHHHHcCCceEEEEeCC------CCHHHHHHHHHHHHHcCCCEEEEC
Confidence 7778888898888899999999 455555666666677799987753
No 68
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=22.27 E-value=97 Score=28.25 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=19.0
Q ss_pred ChhhHHHHHHHHHhhCCCEEEecCC
Q psy10341 47 TTKGHGECVKFVRDLNVPLLVLGGG 71 (213)
Q Consensus 47 s~~g~~~cv~~v~s~~~p~llLGGG 71 (213)
|.+....++++.+..++|++++|||
T Consensus 45 ~~edv~~~v~~a~~~~ip~~vlGgG 69 (307)
T PRK13906 45 KNEEVQAVVKYAYQNEIPVTYLGNG 69 (307)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCc
Confidence 3456667777777788999998876
No 69
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=22.19 E-value=1.2e+02 Score=26.98 Aligned_cols=67 Identities=18% Similarity=0.163 Sum_probs=43.7
Q ss_pred CCCcccCCccchHHHHHHHHhhccc--------eeEe-cCCCCCCCcCChhhHHHHHHHHH---h-hCCCEEEecCCCCC
Q psy10341 8 RLGQFSLTTKGHGECVKFVRDLNVP--------LLVL-GGGGLGQFSLTTKGHGECVKFVR---D-LNVPLLVLGGGGYT 74 (213)
Q Consensus 8 ~~g~fNl~~~g~~~~v~~vk~~~~p--------~i~L-~gD~Lg~fnLs~~g~~~cv~~v~---s-~~~p~llLGGGGY~ 74 (213)
..+.+|+|++=-..+++++-+..+. .|.. ..++|-++|-.-.|..++++... . -+..++++|.||-.
T Consensus 58 ~~~G~nVT~P~K~~~~~~~d~~~~~A~~iGAVNTv~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~k~vlvlGaGGaa 137 (282)
T TIGR01809 58 QFGGASVTIPLKFAILRFADEHTDRASLIGSVNTLLRTQNGIWKGDNTDWDGIAGALANIGKFEPLAGFRGLVIGAGGTS 137 (282)
T ss_pred CCcEEEECCCCHHHHHHHhhcCCHHHHHhCceeEEEEcCCCcEEEecCCHHHHHHHHHhhCCccccCCceEEEEcCcHHH
Confidence 4567888888555555554332221 2333 44567788988889888887532 1 24679999999965
No 70
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=22.17 E-value=1.7e+02 Score=25.47 Aligned_cols=11 Identities=27% Similarity=0.706 Sum_probs=5.4
Q ss_pred EEEecCCCCCC
Q psy10341 65 LLVLGGGGYTL 75 (213)
Q Consensus 65 ~llLGGGGY~~ 75 (213)
+++.||||+=.
T Consensus 67 ~vI~gGG~l~~ 77 (298)
T TIGR03609 67 VVIWGGGSLLQ 77 (298)
T ss_pred EEEECCccccc
Confidence 34555555443
No 71
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=22.16 E-value=86 Score=29.27 Aligned_cols=25 Identities=12% Similarity=0.255 Sum_probs=17.6
Q ss_pred cCcHHHHHHHHHHHHhhcccccCCC
Q psy10341 124 ANSKQYLELITKTVYDNLKMVAFSP 148 (213)
Q Consensus 124 ~N~~~~le~i~~~i~~nl~~~~~aP 148 (213)
.+.....+.|+..+.+.|+.+..-|
T Consensus 277 ~~~~~~~~~l~~~~~~~l~~l~~~~ 301 (322)
T CHL00198 277 ADPASASKILKKKLIRQLDFLKILS 301 (322)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHCCC
Confidence 4455677888888888887776544
No 72
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=21.88 E-value=89 Score=27.93 Aligned_cols=66 Identities=17% Similarity=0.199 Sum_probs=40.9
Q ss_pred CCcccCCccchHHHHHHHHhhcc-------c-eeEecCCCCCCCcCChhhHHHHHHHH-Hhh-CCCEEEecCCCCC
Q psy10341 9 LGQFSLTTKGHGECVKFVRDLNV-------P-LLVLGGGGLGQFSLTTKGHGECVKFV-RDL-NVPLLVLGGGGYT 74 (213)
Q Consensus 9 ~g~fNl~~~g~~~~v~~vk~~~~-------p-~i~L~gD~Lg~fnLs~~g~~~cv~~v-~s~-~~p~llLGGGGY~ 74 (213)
...+|+|++=-..+.+.+.+..+ - .|....+++-++|---.|..++++.- ... +.+++++|.||-.
T Consensus 64 ~~G~nVTiP~K~~v~~~~D~~~~~A~~iGAvNTv~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~k~vlIlGaGGaa 139 (284)
T PRK12549 64 FAGLNITHPCKQAVIPHLDELSDDARALGAVNTVVFRDGRRIGHNTDWSGFAESFRRGLPDASLERVVQLGAGGAG 139 (284)
T ss_pred CCEEEECcCCHHHHHHHhccCCHHHHHhCCceEEEecCCEEEEEcCCHHHHHHHHHhhccCccCCEEEEECCcHHH
Confidence 44677777744444444322211 1 24455667888898888888888642 122 4579999999943
No 73
>PRK07714 hypothetical protein; Provisional
Probab=21.83 E-value=3.3e+02 Score=20.44 Aligned_cols=46 Identities=20% Similarity=0.204 Sum_probs=35.9
Q ss_pred chHHHHHHHHhhccceeEecCCCCCCCcCChhhHHHHHHHHHhhCCCEEEec
Q psy10341 18 GHGECVKFVRDLNVPLLVLGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLG 69 (213)
Q Consensus 18 g~~~~v~~vk~~~~p~i~L~gD~Lg~fnLs~~g~~~cv~~v~s~~~p~llLG 69 (213)
|..++.+.+++-...+++++.| .+.+...+...+....++|++..|
T Consensus 22 G~~~v~~al~~g~~~lViiA~D------~s~~~~~ki~~~~~~~~vp~~~~~ 67 (100)
T PRK07714 22 GEELVLKEVRSGKAKLVLLSED------ASVNTTKKITDKCTYYNVPMRKVE 67 (100)
T ss_pred cHHHHHHHHHhCCceEEEEeCC------CCHHHHHHHHHHHHhcCCCEEEeC
Confidence 6677888888888889999999 667766776666666799998754
No 74
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=21.63 E-value=1.4e+02 Score=27.36 Aligned_cols=57 Identities=25% Similarity=0.386 Sum_probs=38.0
Q ss_pred ChhhHHHHHHHHHhhCCCEEEecCCCCCCCccchhhhhhhhhhc--cccCCCCCCCCcc
Q psy10341 47 TTKGHGECVKFVRDLNVPLLVLGGGGYTLRNVARCWTYETSLLV--NEEISNDIPDSLY 103 (213)
Q Consensus 47 s~~g~~~cv~~v~s~~~p~llLGGGGY~~~nvAR~Wt~~t~~~~--~~~ip~~iP~~~y 103 (213)
+.....+|++.++..++-.|+.=||.=+.+...+..-+.--.++ -..|.++||..+|
T Consensus 76 ~~~~~~~~~~~l~~~~Id~Li~IGGdgs~~~a~~L~e~~~i~vigiPkTIDNDl~~td~ 134 (301)
T TIGR02482 76 TEEGRQKAVENLKKLGIEGLVVIGGDGSYTGAQKLYEEGGIPVIGLPGTIDNDIPGTDY 134 (301)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHhhCCCEEeecccccCCCcCccc
Confidence 45678899999999999888877776677666666543211222 3456777775543
No 75
>KOG0276|consensus
Probab=21.58 E-value=16 Score=37.19 Aligned_cols=92 Identities=23% Similarity=0.349 Sum_probs=54.6
Q ss_pred CCcCChhhHHH---HHHHHHhhCCCEEEecCCCCCCCccchhhhhhhhhhccccCCCCCCCCcccccCCCCCCCCCCC--
Q psy10341 43 QFSLTTKGHGE---CVKFVRDLNVPLLVLGGGGYTLRNVARCWTYETSLLVNEEISNDIPDSLYKDFFQPDYNLHPEF-- 117 (213)
Q Consensus 43 ~fnLs~~g~~~---cv~~v~s~~~p~llLGGGGY~~~nvAR~Wt~~t~~~~~~~ip~~iP~~~y~~~y~pdy~L~~~~-- 117 (213)
.=|.|.+||.+ ||.|...-.+|.|+.|+ ..++.+.|-|-|...+-+ |.-+. .|--+-+|.|.+.+-+.-
T Consensus 174 ~~nfTl~gHekGVN~Vdyy~~gdkpylIsga----DD~tiKvWDyQtk~CV~T-LeGHt-~Nvs~v~fhp~lpiiisgsE 247 (794)
T KOG0276|consen 174 HPNFTLEGHEKGVNCVDYYTGGDKPYLISGA----DDLTIKVWDYQTKSCVQT-LEGHT-NNVSFVFFHPELPIIISGSE 247 (794)
T ss_pred CCceeeeccccCcceEEeccCCCcceEEecC----CCceEEEeecchHHHHHH-hhccc-ccceEEEecCCCcEEEEecC
Confidence 34778889987 77777777899999997 788999999999877642 22111 112234455555444431
Q ss_pred CCcccccCcHHH-HHHHHHHHHhh
Q psy10341 118 VHKHDNANSKQY-LELITKTVYDN 140 (213)
Q Consensus 118 ~~~~~n~N~~~~-le~i~~~i~~n 140 (213)
.+.++-=|+..| +|+....-++.
T Consensus 248 DGTvriWhs~Ty~lE~tLn~gleR 271 (794)
T KOG0276|consen 248 DGTVRIWNSKTYKLEKTLNYGLER 271 (794)
T ss_pred CccEEEecCcceehhhhhhcCCce
Confidence 233444444443 34443333333
No 76
>PRK08227 autoinducer 2 aldolase; Validated
Probab=21.20 E-value=2.7e+02 Score=25.17 Aligned_cols=17 Identities=12% Similarity=0.073 Sum_probs=14.5
Q ss_pred hHHHHHHHHhhccceeE
Q psy10341 19 HGECVKFVRDLNVPLLV 35 (213)
Q Consensus 19 ~~~~v~~vk~~~~p~i~ 35 (213)
.+++++.+.+|+.|+|.
T Consensus 129 l~~v~~ea~~~G~Plla 145 (264)
T PRK08227 129 IIQLVDAGLRYGMPVMA 145 (264)
T ss_pred HHHHHHHHHHhCCcEEE
Confidence 37788889999999877
No 77
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=21.11 E-value=1.9e+02 Score=26.02 Aligned_cols=24 Identities=25% Similarity=0.427 Sum_probs=15.5
Q ss_pred HHHHHHHHhhCCCEEEecCCCCCC
Q psy10341 52 GECVKFVRDLNVPLLVLGGGGYTL 75 (213)
Q Consensus 52 ~~cv~~v~s~~~p~llLGGGGY~~ 75 (213)
..-++++++...+-+.+|++||.-
T Consensus 116 ~~Li~~i~~~~~~~f~igva~~Pe 139 (281)
T TIGR00677 116 VDLVKYIRSKYGDYFCIGVAGYPE 139 (281)
T ss_pred HHHHHHHHHhCCCceEEEEEECCC
Confidence 445566665444556888888863
No 78
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=20.88 E-value=2.6e+02 Score=27.07 Aligned_cols=71 Identities=15% Similarity=0.239 Sum_probs=49.1
Q ss_pred chHHHHHHHHhhccceeEec-CCCCCCCcCChhhHHHHHHHHHhh--------CCCEEEecCCCCCCCccchhhhhhhhh
Q psy10341 18 GHGECVKFVRDLNVPLLVLG-GGGLGQFSLTTKGHGECVKFVRDL--------NVPLLVLGGGGYTLRNVARCWTYETSL 88 (213)
Q Consensus 18 g~~~~v~~vk~~~~p~i~L~-gD~Lg~fnLs~~g~~~cv~~v~s~--------~~p~llLGGGGY~~~nvAR~Wt~~t~~ 88 (213)
.++...++.+...+|+|-.+ || ..--.++.+...+....+ ++.+.++|-+.|+ ||++.|....+.
T Consensus 192 ~~~~~~e~A~~s~vPVINAgdg~----~~HPtQaLaDl~Ti~E~~g~~g~~l~G~kIa~vGD~~~~--rv~~Sl~~~la~ 265 (429)
T PRK11891 192 EQGSVAEFARATNLPVINGGDGP----GEHPSQALLDLYTIQREFSRLGKIVDGAHIALVGDLKYG--RTVHSLVKLLAL 265 (429)
T ss_pred chhHHHHHHHhCCCCEEECCCCC----CCCcHHHHHHHHHHHHHhCccCCCcCCCEEEEECcCCCC--hHHHHHHHHHHH
Confidence 34555566677788887755 54 245577888877776554 4688888877544 899999998777
Q ss_pred hccccC
Q psy10341 89 LVNEEI 94 (213)
Q Consensus 89 ~~~~~i 94 (213)
.+|.++
T Consensus 266 ~~G~~v 271 (429)
T PRK11891 266 YRGLKF 271 (429)
T ss_pred hcCCEE
Confidence 667654
No 79
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=20.78 E-value=96 Score=26.01 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=19.9
Q ss_pred HHHHHHHHhhCCCEEEecCCCCC
Q psy10341 52 GECVKFVRDLNVPLLVLGGGGYT 74 (213)
Q Consensus 52 ~~cv~~v~s~~~p~llLGGGGY~ 74 (213)
.++++.+++...|++++|+|.-.
T Consensus 18 ~~aa~lLk~AKRPvIivG~ga~~ 40 (162)
T TIGR00315 18 KLVAMMIKRAKRPLLIVGPENLE 40 (162)
T ss_pred HHHHHHHHcCCCcEEEECCCcCc
Confidence 67788888889999999999864
No 80
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=20.72 E-value=2.1e+02 Score=25.76 Aligned_cols=74 Identities=19% Similarity=0.377 Sum_probs=49.4
Q ss_pred cchHHHHHHHHhhccceeEecCCC-CCCC----cCChhhHHHHHHHHHh-hCCCEEEecCCCCCCCccchhhhh-hhhhh
Q psy10341 17 KGHGECVKFVRDLNVPLLVLGGGG-LGQF----SLTTKGHGECVKFVRD-LNVPLLVLGGGGYTLRNVARCWTY-ETSLL 89 (213)
Q Consensus 17 ~g~~~~v~~vk~~~~p~i~L~gD~-Lg~f----nLs~~g~~~cv~~v~s-~~~p~llLGGGGY~~~nvAR~Wt~-~t~~~ 89 (213)
-...++.+|+++.++..|.++-.+ .|.| .|.+... +.+++ .++|+++-||=|=+..++.++..+ ...+-
T Consensus 153 t~~eea~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L----~~i~~~~~iPlv~hGgSGi~~e~i~~~i~~Gi~kiN 228 (282)
T TIGR01859 153 ADPDEAEQFVKETGVDYLAAAIGTSHGKYKGEPGLDFERL----KEIKELTNIPLVLHGASGIPEEQIKKAIKLGIAKIN 228 (282)
T ss_pred CCHHHHHHHHHHHCcCEEeeccCccccccCCCCccCHHHH----HHHHHHhCCCEEEECCCCCCHHHHHHHHHcCCCEEE
Confidence 355778899988899988876332 3333 2333333 33332 479999999999999999888765 44555
Q ss_pred ccccC
Q psy10341 90 VNEEI 94 (213)
Q Consensus 90 ~~~~i 94 (213)
+++++
T Consensus 229 v~T~l 233 (282)
T TIGR01859 229 IDTDC 233 (282)
T ss_pred ECcHH
Confidence 56554
No 81
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=20.58 E-value=1.6e+02 Score=27.31 Aligned_cols=71 Identities=17% Similarity=0.258 Sum_probs=46.7
Q ss_pred ccCCccchHHHHHHHHhhccceeE-------------ecCC--CCCCCcCChhhHHHHHHHHHhhCCCEEEecCCCCCCC
Q psy10341 12 FSLTTKGHGECVKFVRDLNVPLLV-------------LGGG--GLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGYTLR 76 (213)
Q Consensus 12 fNl~~~g~~~~v~~vk~~~~p~i~-------------L~gD--~Lg~fnLs~~g~~~cv~~v~s~~~p~llLGGGGY~~~ 76 (213)
+-|+.++|.++.+.+++.+.+++. ++-| .+|.++++. -.-++++.+.++|+++-=|.. ++.
T Consensus 71 ~~l~~e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~~v~~~KIaS~~~~n---~pLL~~~A~~gkPvilStGma-tl~ 146 (329)
T TIGR03569 71 LELSEEDHRELKEYCESKGIEFLSTPFDLESADFLEDLGVPRFKIPSGEITN---APLLKKIARFGKPVILSTGMA-TLE 146 (329)
T ss_pred hCCCHHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCEEEECcccccC---HHHHHHHHhcCCcEEEECCCC-CHH
Confidence 456667778888888888888765 2222 345666664 345666677788988876664 766
Q ss_pred ccchhhhhhh
Q psy10341 77 NVARCWTYET 86 (213)
Q Consensus 77 nvAR~Wt~~t 86 (213)
.+.++-.++.
T Consensus 147 Ei~~Av~~i~ 156 (329)
T TIGR03569 147 EIEAAVGVLR 156 (329)
T ss_pred HHHHHHHHHH
Confidence 6666655553
No 82
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=20.49 E-value=3.2e+02 Score=19.32 Aligned_cols=47 Identities=23% Similarity=0.449 Sum_probs=29.6
Q ss_pred HHHHHHHHhhccceeEecCCCCCCCcCChhhHHHHHHHH-HhhCCCEEEe
Q psy10341 20 GECVKFVRDLNVPLLVLGGGGLGQFSLTTKGHGECVKFV-RDLNVPLLVL 68 (213)
Q Consensus 20 ~~~v~~vk~~~~p~i~L~gD~Lg~fnLs~~g~~~cv~~v-~s~~~p~llL 68 (213)
..+++++++.+..+|++|.-+.+.+.=.. .+...+.+ +...+|+|++
T Consensus 92 ~~i~~~~~~~~~dliv~G~~~~~~~~~~~--~gs~~~~l~~~~~~pVlvv 139 (140)
T PF00582_consen 92 DAIIEFAEEHNADLIVMGSRGRSGLERLL--FGSVAEKLLRHAPCPVLVV 139 (140)
T ss_dssp HHHHHHHHHTTCSEEEEESSSTTSTTTSS--SHHHHHHHHHHTSSEEEEE
T ss_pred hhhhhccccccceeEEEeccCCCCccCCC--cCCHHHHHHHcCCCCEEEe
Confidence 45677778888888888887766554322 33333444 4467788774
Done!