Query psy10341
Match_columns 213
No_of_seqs 205 out of 857
Neff 5.1
Searched_HMMs 29240
Date Fri Aug 16 15:30:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10341.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10341hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a69_A Histone deacetylase 3,; 100.0 5.1E-37 1.8E-41 282.2 11.4 141 11-151 218-376 (376)
2 3max_A HD2, histone deacetylas 100.0 1.9E-34 6.3E-39 264.6 11.4 133 11-144 217-367 (367)
3 3ew8_A HD8, histone deacetylas 100.0 4.7E-34 1.6E-38 263.5 11.0 136 11-147 226-379 (388)
4 2vqm_A HD4, histone deacetylas 99.6 1.4E-15 4.9E-20 141.0 6.2 118 24-157 273-400 (413)
5 1c3p_A Protein (HDLP (histone 99.6 2.1E-15 7.1E-20 138.5 5.4 91 11-101 217-325 (375)
6 1zz1_A Histone deacetylase-lik 99.3 6.5E-13 2.2E-17 121.7 6.2 94 11-105 227-343 (369)
7 3q9b_A Acetylpolyamine amidohy 99.1 7.4E-11 2.5E-15 107.3 6.5 76 11-86 244-336 (341)
8 3men_A Acetylpolyamine aminohy 99.1 9.2E-11 3.1E-15 107.5 5.5 79 11-89 262-357 (362)
9 4a69_A Histone deacetylase 3,; 98.6 1.9E-07 6.6E-12 85.8 9.9 81 3-112 260-341 (376)
10 3ew8_A HD8, histone deacetylas 98.6 1.7E-07 5.9E-12 86.5 9.2 80 3-110 268-347 (388)
11 2pqp_A HD7A, histone deacetyla 98.5 6.2E-08 2.1E-12 90.3 5.6 71 24-94 302-382 (421)
12 3max_A HD2, histone deacetylas 98.5 3.5E-07 1.2E-11 83.8 9.4 79 3-110 259-338 (367)
13 1c3p_A Protein (HDLP (histone 97.2 0.00099 3.4E-08 61.0 9.0 54 3-61 259-312 (375)
14 3men_A Acetylpolyamine aminohy 97.0 0.00068 2.3E-08 62.0 4.9 53 3-60 303-355 (362)
15 2vqm_A HD4, histone deacetylas 95.9 0.0098 3.3E-07 55.0 5.8 54 3-61 291-347 (413)
16 1zz1_A Histone deacetylase-lik 95.7 0.012 4.2E-07 53.6 5.6 53 3-60 269-326 (369)
17 2pqp_A HD7A, histone deacetyla 79.0 2 7E-05 39.9 4.8 53 3-60 320-375 (421)
18 1uf3_A Hypothetical protein TT 74.2 7.5 0.00026 30.2 6.3 50 20-70 22-71 (228)
19 3av0_A DNA double-strand break 67.0 10 0.00036 33.3 6.3 52 19-70 49-103 (386)
20 2q8u_A Exonuclease, putative; 66.4 11 0.00036 32.3 6.1 52 19-70 50-104 (336)
21 1ii7_A MRE11 nuclease; RAD50, 52.8 35 0.0012 29.0 7.0 51 20-70 30-83 (333)
22 2yvt_A Hypothetical protein AQ 46.3 34 0.0011 27.3 5.5 53 18-70 20-97 (260)
23 3t1i_A Double-strand break rep 42.9 49 0.0017 30.3 6.6 41 20-60 61-101 (431)
24 3ced_A Methionine import ATP-b 42.6 14 0.00049 26.8 2.4 48 22-69 37-96 (98)
25 3tho_B Exonuclease, putative; 39.7 51 0.0018 28.9 6.1 54 20-76 33-89 (379)
26 4fbw_A DNA repair protein RAD3 36.2 72 0.0025 29.1 6.6 42 19-60 41-82 (417)
27 4fbk_A DNA repair and telomere 34.3 81 0.0028 29.4 6.7 41 20-60 105-145 (472)
28 3cf4_G Acetyl-COA decarboxylas 33.0 87 0.003 24.3 5.8 45 19-68 24-68 (170)
29 1su1_A Hypothetical protein YF 32.9 43 0.0015 26.7 4.1 52 19-70 41-96 (208)
30 2nxf_A Putative dimetal phosph 32.3 59 0.002 26.2 4.9 51 20-70 41-95 (322)
31 3n6r_B Propionyl-COA carboxyla 30.3 36 0.0012 32.3 3.6 47 20-68 363-417 (531)
32 2qsw_A Methionine import ATP-b 30.2 29 0.001 24.8 2.4 47 22-68 40-97 (100)
33 3d03_A Phosphohydrolase; glyce 29.9 1.1E+02 0.0037 24.2 6.0 51 18-70 27-79 (274)
34 3dhx_A Methionine import ATP-b 28.3 32 0.0011 25.1 2.3 48 22-69 38-96 (106)
35 1ytl_A Acetyl-COA decarboxylas 27.4 74 0.0025 25.4 4.6 44 20-70 25-69 (174)
36 3v7q_A Probable ribosomal prot 27.0 1.7E+02 0.0059 20.9 6.3 47 17-69 22-68 (101)
37 1y80_A Predicted cobalamin bin 26.9 1.7E+02 0.0058 23.1 6.7 51 20-74 129-182 (210)
38 1s3l_A Hypothetical protein MJ 26.9 95 0.0032 24.4 5.1 44 18-70 40-83 (190)
39 3u9r_B MCC beta, methylcrotony 26.8 67 0.0023 30.6 4.8 47 20-68 377-431 (555)
40 2o6l_A UDP-glucuronosyltransfe 26.2 1.7E+02 0.0058 21.5 6.3 52 20-72 9-61 (170)
41 3cf4_G Acetyl-COA decarboxylas 25.5 44 0.0015 26.1 2.8 24 51-74 24-47 (170)
42 3on1_A BH2414 protein; structu 24.5 1.9E+02 0.0066 20.5 6.3 47 17-69 21-67 (101)
43 1vrg_A Propionyl-COA carboxyla 23.4 46 0.0016 31.4 3.0 49 20-68 355-409 (527)
44 3gf3_A Glutaconyl-COA decarbox 22.5 47 0.0016 31.9 2.9 47 20-68 398-452 (588)
45 1on3_A Methylmalonyl-COA carbo 20.9 56 0.0019 30.8 3.0 47 20-68 351-405 (523)
46 1pix_A Glutaconyl-COA decarbox 20.6 54 0.0018 31.5 2.8 47 20-68 396-450 (587)
No 1
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens}
Probab=100.00 E-value=5.1e-37 Score=282.23 Aligned_cols=141 Identities=50% Similarity=0.949 Sum_probs=124.6
Q ss_pred cccCCcc-ch---------HHHH-HHHHhhccceeE-------ecCCCCCCCcCChhhHHHHHHHHHhhCCCEEEecCCC
Q psy10341 11 QFSLTTK-GH---------GECV-KFVRDLNVPLLV-------LGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGG 72 (213)
Q Consensus 11 ~fNl~~~-g~---------~~~v-~~vk~~~~p~i~-------L~gD~Lg~fnLs~~g~~~cv~~v~s~~~p~llLGGGG 72 (213)
.+|++++ |. .+++ ..++.|.|.+|+ +.|||||+||||.+||++|+++++++++|++++||||
T Consensus 218 ~vNvPL~~G~~D~~yl~~~~~~l~p~~~~f~Pd~IvvsaG~Da~~~DpLg~l~Lt~~g~~~~~~~l~~~~~p~v~v~eGG 297 (376)
T 4a69_A 218 CLNVPLRDGIDDQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHGECVEYVKSFNIPLLVLGGGG 297 (376)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHHHHHHHHHCCSEEEEECCGGGBTTCSSCCCBBCHHHHHHHHHHHHTTCCCEEEECCCC
T ss_pred eEeeecCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEeCcccCCCCCcccCeecCHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 5788887 54 2233 346788888866 8899999999999999999999999999999999999
Q ss_pred CCCCccchhhhhhhhhhccccCCCCCCCCcccccCCCCCCCCCCCCCcccccCcHHHHHHHHHHHHhhcccccCCCccc
Q psy10341 73 YTLRNVARCWTYETSLLVNEEISNDIPDSLYKDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMVAFSPSVQ 151 (213)
Q Consensus 73 Y~~~nvAR~Wt~~t~~~~~~~ip~~iP~~~y~~~y~pdy~L~~~~~~~~~n~N~~~~le~i~~~i~~nl~~~~~aPsvq 151 (213)
|++++||||||++|++++|++||++||+++|+++|+|+|+||+..+++|+|+|+++||++|+++|++|||++++|||||
T Consensus 298 Y~~~~var~w~~~~a~l~g~~~~~~~P~~~~~~~~~p~~~l~~~~~~~~~~~n~~~~l~~~~~~~~~~l~~~~~~p~~~ 376 (376)
T 4a69_A 298 YTVRNVARCWTYETSLLVEEAISEELPYSEYFEYFAPDFTLHPDVSTRIENQNSRQYLDQIRQTIFENLKMLNHAPSVQ 376 (376)
T ss_dssp CSHHHHHHHHHHHHHHHTTCCCCSBCCCCTTGGGGTTTCBSSCCCCCCSCCCCCHHHHHHHHHHHHHHHHTTC------
T ss_pred CChhHHHHHHHHHHHHhcCCCccCCCCCchHHHHhCCCcccCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 9999999999999999999999999999999999999999999877899999999999999999999999999999998
No 2
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens}
Probab=100.00 E-value=1.9e-34 Score=264.57 Aligned_cols=133 Identities=42% Similarity=0.840 Sum_probs=122.1
Q ss_pred cccCCcc-chH---------HHH-HHHHhhccceeE-------ecCCCCCCCcCChhhHHHHHHHHHhhCCCEEEecCCC
Q psy10341 11 QFSLTTK-GHG---------ECV-KFVRDLNVPLLV-------LGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGG 72 (213)
Q Consensus 11 ~fNl~~~-g~~---------~~v-~~vk~~~~p~i~-------L~gD~Lg~fnLs~~g~~~cv~~v~s~~~p~llLGGGG 72 (213)
.+|+|++ |.+ +++ ..++.|.|.+|+ +.|||||+||||.+||++|+++++++++|++++||||
T Consensus 217 ~vNvPL~~g~~d~~y~~~~~~~~~~~~~~f~Pd~ivvsaG~D~~~~Dplg~~~lt~~g~~~~~~~~~~~~~p~v~~~eGG 296 (367)
T 3max_A 217 AVNFPMRDGIDDESYGQIFKPIISKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTVKGHAKCVEVVKTFNLPLLMLGGGG 296 (367)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHHHHHHHCCSEEEEECCGGGBTTCSSCCCCBCHHHHHHHHHHHHTTCCCEEEECCCC
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEECCccCcCCCCCCCeeeCHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 4788887 542 233 346788888865 8999999999999999999999999999999999999
Q ss_pred CCCCccchhhhhhhhhhccccCCCCCCCCcccccCCCCCCCCCCCCCcccccCcHHHHHHHHHHHHhhcccc
Q psy10341 73 YTLRNVARCWTYETSLLVNEEISNDIPDSLYKDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMV 144 (213)
Q Consensus 73 Y~~~nvAR~Wt~~t~~~~~~~ip~~iP~~~y~~~y~pdy~L~~~~~~~~~n~N~~~~le~i~~~i~~nl~~~ 144 (213)
|++++|||||||+|++++|++||+++|+|+||++|+|+|+|++. +++|+|+|+++||++|+++|+||||++
T Consensus 297 Y~~~~var~wt~~ta~~~~~~i~~~~p~~~~~~~~~p~~~l~~~-~~~~~~~n~~~~l~~i~~~~~~~l~~~ 367 (367)
T 3max_A 297 YTIRNVARCWTYETAVALDCEIPNELPYNDYFEYFGPDFKLHIS-PSNMTNQNTPEYMEKIKQRLFENLRML 367 (367)
T ss_dssp CSHHHHHHHHHHHHHHHTTCCCCSBCCCCTTGGGGTTTCBSSCC-CCSCCCCCCHHHHHHHHHHHHHHHTTC
T ss_pred CChhHHHHHHHHHHHHHhhcccccCCCchhhHHhhCCCeeccCC-cccccCCCCHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999 789999999999999999999999975
No 3
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} SCOP: c.42.1.2 PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A*
Probab=100.00 E-value=4.7e-34 Score=263.47 Aligned_cols=136 Identities=29% Similarity=0.599 Sum_probs=123.9
Q ss_pred cccCCcc-chH---------HHH-HHHHhhccceeE-------ecCCCCCCCcCChhhHHHHHHHHHhhCCCEEEecCCC
Q psy10341 11 QFSLTTK-GHG---------ECV-KFVRDLNVPLLV-------LGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGG 72 (213)
Q Consensus 11 ~fNl~~~-g~~---------~~v-~~vk~~~~p~i~-------L~gD~Lg~fnLs~~g~~~cv~~v~s~~~p~llLGGGG 72 (213)
.+|++++ |.+ +++ ..++.|.|.+|+ +.|||||+||||.+||++|+++|+++++|++++||||
T Consensus 226 ~vNvPL~~G~~d~~y~~~~~~~l~p~~~~F~PdlIvvsaG~Da~~~DpLg~l~lt~~g~~~~~~~l~~~~~p~l~~~gGG 305 (388)
T 3ew8_A 226 SVNVPIQDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQWQLATLILGGGG 305 (388)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHHHHHHHCCSEEEEECCSTTBTTCTTCCCCBCHHHHHHHHHHHHTTCCEEEEECCCC
T ss_pred eeeccCCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEECCccCCCCCCCCCCcCCHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 4788888 542 233 345788888865 7799999999999999999999999999999999999
Q ss_pred CCCCccchhhhhhhhhhccccCCCCCCCCcccccCCCCCCCCCCCCCcccccCcHHHHHHHHHHHHhhcccccCC
Q psy10341 73 YTLRNVARCWTYETSLLVNEEISNDIPDSLYKDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMVAFS 147 (213)
Q Consensus 73 Y~~~nvAR~Wt~~t~~~~~~~ip~~iP~~~y~~~y~pdy~L~~~~~~~~~n~N~~~~le~i~~~i~~nl~~~~~a 147 (213)
|++++||||||++|++++|++||++||+++||++|+|+|+|++. +++|+|+|+++||++|+++|++|||++++-
T Consensus 306 Y~~~~var~w~~~~~~l~g~~l~~~lP~~~~~~~~~p~~~l~~~-~~~~~~~n~~~~l~~i~~~~~~~l~~~~~~ 379 (388)
T 3ew8_A 306 YNLANTARCWTYLTGVILGKTLSSEIPDHEFFTAYGPDYVLEIT-PSCRPDRNEPHRIQQILNYIKGNLKHVVIE 379 (388)
T ss_dssp CSHHHHHHHHHHHHHHHHTCCCCSBCCCCTTGGGGTTTCBSCCC-CCSCCCCCCHHHHHHHHHHHHHHHTTCCC-
T ss_pred CChhHHHHHHHHHHHHHcCCCCCCCCCcccchhhcCCCccccCC-cccCCCCCCHHHHHHHHHHHHHHHhcCCCc
Confidence 99999999999999999999999999999999999999999999 789999999999999999999999998764
No 4
>2vqm_A HD4, histone deacetylase 4; inhibitor, repressor, chromatin, coiled coil, transcription regulation, UBL conjugation, chromatin regulator; HET: HA3; 1.8A {Homo sapiens} PDB: 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A* 3c10_A* 3c0z_A 3c0y_A*
Probab=99.57 E-value=1.4e-15 Score=141.02 Aligned_cols=118 Identities=18% Similarity=0.270 Sum_probs=98.6
Q ss_pred HHHHhhccceeE-------ecC--CCCCCCcCChhhHHHHHHHHHhh-CCCEEEecCCCCCCCccchhhhhhhhhhcccc
Q psy10341 24 KFVRDLNVPLLV-------LGG--GGLGQFSLTTKGHGECVKFVRDL-NVPLLVLGGGGYTLRNVARCWTYETSLLVNEE 93 (213)
Q Consensus 24 ~~vk~~~~p~i~-------L~g--D~Lg~fnLs~~g~~~cv~~v~s~-~~p~llLGGGGY~~~nvAR~Wt~~t~~~~~~~ 93 (213)
..+++|+|.+|+ +.| |+||+|+||.+++++|.+.|+++ ++|+++++||||+++++||||++++..++|.+
T Consensus 273 p~~~~f~PdlivvsaG~Da~~~d~D~lg~~~lt~~~~~~~~~~l~~~a~~~~v~vleGGY~~~~l~~~~~~~~~~l~g~~ 352 (413)
T 2vqm_A 273 PIASEFAPDVVLVSSGFDAVEGHPTPLGGYNLSARCFGYLTKQLMGLAGGRIVLALEGGHDLTAICDASEACVSALLGNE 352 (413)
T ss_dssp HHHHHHCCSEEEEEECCTTBSSCTTTTCCCCBCHHHHHHHHHHHHTSGGGCEEEEECCCCCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHhcCCCEEEEeCChhhcCCCCCCCCCcccCHHHHHHHHHHHHHhcCCCEEEEeCcCCChHHHHHHHHHHHHHHcCCC
Confidence 445788888866 556 67999999999999999999996 89999999999999999999999999999987
Q ss_pred CCCCCCCCcccccCCCCCCCCCCCCCcccccCcHHHHHHHHHHHHhhcccccCCCcccccccCC
Q psy10341 94 ISNDIPDSLYKDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMVAFSPSVQMQDMIG 157 (213)
Q Consensus 94 ip~~iP~~~y~~~y~pdy~L~~~~~~~~~n~N~~~~le~i~~~i~~nl~~~~~aPsvqm~~~p~ 157 (213)
++. +| ++.+.. ..+.|+.++++++++...+..+.++.+|+++++.+++
T Consensus 353 ~~~-~p----------~~~~~~-----~p~~~~~~~~~~v~~~~~~~W~~l~~~~~~~~~~~~~ 400 (413)
T 2vqm_A 353 LDP-LP----------EKVLQQ-----RPNANAVRSMEKVMEIHSKYWRCLQRTTSTAGRSLIE 400 (413)
T ss_dssp CCC-CC----------HHHHHC-----CCCHHHHHHHHHHHHHHHTTCGGGTSCCCCTTSCHHH
T ss_pred CCC-CC----------hhhhhc-----CCChHHHHHHHHHHHHHHHHhhhhhcchhhcCcCcch
Confidence 642 22 222221 2467889999999999999999999999999977544
No 5
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A*
Probab=99.55 E-value=2.1e-15 Score=138.48 Aligned_cols=91 Identities=21% Similarity=0.341 Sum_probs=79.6
Q ss_pred cccCCcc-chH---------HHH-HHHHhhccceeE-------ecCCCCCCCcCChhhHHHHHHHHHhhCCCEEEecCCC
Q psy10341 11 QFSLTTK-GHG---------ECV-KFVRDLNVPLLV-------LGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGG 72 (213)
Q Consensus 11 ~fNl~~~-g~~---------~~v-~~vk~~~~p~i~-------L~gD~Lg~fnLs~~g~~~cv~~v~s~~~p~llLGGGG 72 (213)
.+|++++ |.+ +++ ..++.|+|.+|+ +.+||||.|+||.+|+++|.++|+++..|+++++|||
T Consensus 217 ~vNvPL~~g~~D~~yl~a~~~~l~p~l~~F~PdlIvvsaG~Da~~~DpLg~l~lt~~g~~~~~~~l~~~a~~vv~vleGG 296 (375)
T 1c3p_A 217 NLNIPLPKGLNDNEFLFALEKSLEIVKEVFEPEVYLLQLGTDPLLEDYLSKFNLSNVAFLKAFNIVREVFGEGVYLGGGG 296 (375)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHHHHHHCCCSEEEEECCSTTBTTCTTCSCCBCHHHHHHHHHHHHHHHCSCEEECCCC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEECCccccCCCCCCCcccCHHHHHHHHHHHHHhccceEEEECCC
Confidence 5688887 442 233 356788888766 8899999999999999999999999999999999999
Q ss_pred CCCCccchhhhhhhhhhccccCCCCCCCC
Q psy10341 73 YTLRNVARCWTYETSLLVNEEISNDIPDS 101 (213)
Q Consensus 73 Y~~~nvAR~Wt~~t~~~~~~~ip~~iP~~ 101 (213)
|++.+++|||++++++++|.++|+.||+.
T Consensus 297 Y~~~~l~~~~~~~~~~l~g~~~~~~lp~~ 325 (375)
T 1c3p_A 297 YHPYALARAWTLIWCELSGREVPEKLNNK 325 (375)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCCSSCCHH
T ss_pred CChHHHHHHHHHHHHHHcCCCCCccCCHH
Confidence 99999999999999999999999999953
No 6
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A*
Probab=99.35 E-value=6.5e-13 Score=121.71 Aligned_cols=94 Identities=14% Similarity=0.175 Sum_probs=78.4
Q ss_pred cccCCcc-ch---------HH-HHHHHHhhccceeE-------ecCCCCCCCcCChhhHHHHHHHHHhh-----CCCEEE
Q psy10341 11 QFSLTTK-GH---------GE-CVKFVRDLNVPLLV-------LGGGGLGQFSLTTKGHGECVKFVRDL-----NVPLLV 67 (213)
Q Consensus 11 ~fNl~~~-g~---------~~-~v~~vk~~~~p~i~-------L~gD~Lg~fnLs~~g~~~cv~~v~s~-----~~p~ll 67 (213)
.+|++++ |. .+ +...+++|+|.+|+ +.+||||.|+||.+|+++|.+.|+++ ++|+++
T Consensus 227 ~vNvPL~~g~~d~~yl~~~~~~v~p~l~~f~PdlIvvsaG~Da~~~DpLg~l~lt~~g~~~~~~~l~~~a~~~~~g~vv~ 306 (369)
T 1zz1_A 227 NINVPLPPGSGNAAYLHAMDQVVLPALRAYRPQLIIVGSGFDASMLDPLARMMVTADGFRQMARRTIDCAADICDGRIVF 306 (369)
T ss_dssp EEEEEECTTCBHHHHHHHHHHTHHHHHHHHCCSEEEEEECCTTBTTCTTCCCBBCHHHHHHHHHHHHHHHHHHSTTCEEE
T ss_pred EEeeecCCCCCHHHHHHHHHHHHHHHHHHcCCCEEEEeCCccCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 5688887 44 11 34456788888866 88999999999999999999999885 689999
Q ss_pred ecCCCCCCCccchhhhhhhhhhccccCCCCCCCCcccc
Q psy10341 68 LGGGGYTLRNVARCWTYETSLLVNEEISNDIPDSLYKD 105 (213)
Q Consensus 68 LGGGGY~~~nvAR~Wt~~t~~~~~~~ip~~iP~~~y~~ 105 (213)
++||||+..+++|||+..+..++|.++ ...|..+|++
T Consensus 307 vleGGY~~~~l~~~~~~~~~~l~g~~~-~~~p~~~~~~ 343 (369)
T 1zz1_A 307 VQEGGYSPHYLPFCGLAVIEELTGVRS-LPDPYHEFLA 343 (369)
T ss_dssp EECCCCCTTTHHHHHHHHHHHHHCCCC-CCCTTHHHHH
T ss_pred EECCCCCccHHHHHHHHHHHHHhCCCC-CCCchhHHHh
Confidence 999999999999999999999999887 5456656654
No 7
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A*
Probab=99.10 E-value=7.4e-11 Score=107.28 Aligned_cols=76 Identities=18% Similarity=0.241 Sum_probs=66.0
Q ss_pred cccCCcc-ch---------HHHHHHHHhhccceeE-------ecCCCCCCCcCChhhHHHHHHHHHhhCCCEEEecCCCC
Q psy10341 11 QFSLTTK-GH---------GECVKFVRDLNVPLLV-------LGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGY 73 (213)
Q Consensus 11 ~fNl~~~-g~---------~~~v~~vk~~~~p~i~-------L~gD~Lg~fnLs~~g~~~cv~~v~s~~~p~llLGGGGY 73 (213)
.+|++++ |. .+++..++.|.|.+|+ +.+||||.|+||.+|+++|.+.++++++|+++++||||
T Consensus 244 ~vNvpL~~g~~d~~y~~~~~~~l~~l~~f~Pd~ivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~l~~~~~~~v~vleGGY 323 (341)
T 3q9b_A 244 TANYPMGRGTPYSVWGEALTDSLKRIAAFGAEAIVVSLGVDTFEQDPISFFKLTSPDYITMGRTIAASGVPLLVVMEGGY 323 (341)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHHHHHHHHTCSCEEEEECCTTBTTCTTCCCBBCTTHHHHHHHHHHTTSSCEEEEECCCC
T ss_pred eEeeecCCCCChHHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCCCCCCccCCHHHHHHHHHHHHHhCCCEEEEECCCC
Confidence 5688887 43 3355667888888866 77999999999999999999999999999999999999
Q ss_pred CCCccchhhhhhh
Q psy10341 74 TLRNVARCWTYET 86 (213)
Q Consensus 74 ~~~nvAR~Wt~~t 86 (213)
++.++++|++...
T Consensus 324 ~~~~l~~~~~~~l 336 (341)
T 3q9b_A 324 GVPEIGLNVANVL 336 (341)
T ss_dssp CCTTHHHHHHHHH
T ss_pred ChHHHHHHHHHHH
Confidence 9999999998654
No 8
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B}
Probab=99.07 E-value=9.2e-11 Score=107.46 Aligned_cols=79 Identities=19% Similarity=0.317 Sum_probs=67.6
Q ss_pred cccCCcc-ch---------HHHHHHHHhhccceeE-------ecCCCCCCCcCChhhHHHHHHHHHhhCCCEEEecCCCC
Q psy10341 11 QFSLTTK-GH---------GECVKFVRDLNVPLLV-------LGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGY 73 (213)
Q Consensus 11 ~fNl~~~-g~---------~~~v~~vk~~~~p~i~-------L~gD~Lg~fnLs~~g~~~cv~~v~s~~~p~llLGGGGY 73 (213)
.+|++++ |. .+++..++.|.|.+|+ +.+||||.|+||.+|+++|.++++++++|+++++||||
T Consensus 262 ~vNvPL~~g~~d~~yl~~~~~~l~~l~~f~PdlIvvsaG~Da~~~Dplg~l~lt~~~~~~~~~~l~~~~~~~v~vleGGY 341 (362)
T 3men_A 262 NVNLPMPHGSSEAAFFERVDDALRELRRFAPDALVLSLGFDVYRDDPQSQVAVTTDGFGRLGHLIGALRLPTVIVQEGGY 341 (362)
T ss_dssp EEEEEECTTBCHHHHHHHHHHHHHHHHHHCCSEEEEEECSTTBTTCTTCCBCBCHHHHHHHHHHHHTTCCCEEEEECCCC
T ss_pred eEeeccCCCCChHHHHHHHHHHHHHHHhcCCCEEEEECcccCcCCCCCCCccCCHHHHHHHHHHHHhhCCCEEEEECCCC
Confidence 5788887 44 3355667889988876 77999999999999999999999999999999999999
Q ss_pred CCCccchhhhhhhhhh
Q psy10341 74 TLRNVARCWTYETSLL 89 (213)
Q Consensus 74 ~~~nvAR~Wt~~t~~~ 89 (213)
++.++++|++.....+
T Consensus 342 ~~~~l~~~~~a~l~~l 357 (362)
T 3men_A 342 HIESLEANARSFFGGF 357 (362)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999998665444
No 9
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens}
Probab=98.58 E-value=1.9e-07 Score=85.79 Aligned_cols=81 Identities=38% Similarity=0.717 Sum_probs=65.8
Q ss_pred ccCCCCCCcccCCccchHHHHHHHHhhccceeEecCCCCCCCcCChhhHHHHHHHHHhhCCCEEEecCCCCCCCccchhh
Q psy10341 3 TLSHDRLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGYTLRNVARCW 82 (213)
Q Consensus 3 ~l~gd~~g~fNl~~~g~~~~v~~vk~~~~p~i~L~gD~Lg~fnLs~~g~~~cv~~v~s~~~p~llLGGGGY~~~nvAR~W 82 (213)
++.+||+|.+|||.+|+++|.+++++++.|++++.|.+ ++++..++||.++++. +
T Consensus 260 a~~~DpLg~l~Lt~~g~~~~~~~l~~~~~p~v~v~eGG-----Y~~~~var~w~~~~a~-----l--------------- 314 (376)
T 4a69_A 260 SLGCDRLGCFNLSIRGHGECVEYVKSFNIPLLVLGGGG-----YTVRNVARCWTYETSL-----L--------------- 314 (376)
T ss_dssp GBTTCSSCCCBBCHHHHHHHHHHHHTTCCCEEEECCCC-----CSHHHHHHHHHHHHHH-----H---------------
T ss_pred CCCCCcccCeecCHHHHHHHHHHHHHcCCCEEEEECCC-----CChhHHHHHHHHHHHH-----h---------------
Confidence 57899999999999999999999999999999988854 5567899999999874 2
Q ss_pred hhhhhhhccccCCCCCCCCcccc-cCCCCCC
Q psy10341 83 TYETSLLVNEEISNDIPDSLYKD-FFQPDYN 112 (213)
Q Consensus 83 t~~t~~~~~~~ip~~iP~~~y~~-~y~pdy~ 112 (213)
.+.-+..+||.. .+.+||. .|.....
T Consensus 315 ---~g~~~~~~~P~~-~~~~~~~p~~~l~~~ 341 (376)
T 4a69_A 315 ---VEEAISEELPYS-EYFEYFAPDFTLHPD 341 (376)
T ss_dssp ---TTCCCCSBCCCC-TTGGGGTTTCBSSCC
T ss_pred ---cCCCccCCCCCc-hHHHHhCCCcccCCC
Confidence 334577889987 6776654 6765444
No 10
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} SCOP: c.42.1.2 PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A*
Probab=98.56 E-value=1.7e-07 Score=86.52 Aligned_cols=80 Identities=23% Similarity=0.500 Sum_probs=63.9
Q ss_pred ccCCCCCCcccCCccchHHHHHHHHhhccceeEecCCCCCCCcCChhhHHHHHHHHHhhCCCEEEecCCCCCCCccchhh
Q psy10341 3 TLSHDRLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGYTLRNVARCW 82 (213)
Q Consensus 3 ~l~gd~~g~fNl~~~g~~~~v~~vk~~~~p~i~L~gD~Lg~fnLs~~g~~~cv~~v~s~~~p~llLGGGGY~~~nvAR~W 82 (213)
++.|||+|.+|||.+|+++|++++++++.|+++++|.+ +++...++||.++++. +
T Consensus 268 a~~~DpLg~l~lt~~g~~~~~~~l~~~~~p~l~~~gGG-----Y~~~~var~w~~~~~~-----l--------------- 322 (388)
T 3ew8_A 268 TIAGDPMCSFNMTPVGIGKCLKYILQWQLATLILGGGG-----YNLANTARCWTYLTGV-----I--------------- 322 (388)
T ss_dssp TBTTCTTCCCCBCHHHHHHHHHHHHTTCCEEEEECCCC-----CSHHHHHHHHHHHHHH-----H---------------
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHHhcCCCEEEEECCC-----CChhHHHHHHHHHHHH-----H---------------
Confidence 57899999999999999999999999999999988854 5577799999999874 2
Q ss_pred hhhhhhhccccCCCCCCCCcccccCCCC
Q psy10341 83 TYETSLLVNEEISNDIPDSLYKDFFQPD 110 (213)
Q Consensus 83 t~~t~~~~~~~ip~~iP~~~y~~~y~pd 110 (213)
.+.-+..+||.+--+..|-+.|...
T Consensus 323 ---~g~~l~~~lP~~~~~~~~~p~~~l~ 347 (388)
T 3ew8_A 323 ---LGKTLSSEIPDHEFFTAYGPDYVLE 347 (388)
T ss_dssp ---HTCCCCSBCCCCTTGGGGTTTCBSC
T ss_pred ---cCCCCCCCCCcccchhhcCCCcccc
Confidence 3345678899884344555577533
No 11
>2pqp_A HD7A, histone deacetylase 7A; HDAC, structural genomics, structural genomics consortium, SGC; HET: TSN; 1.80A {Homo sapiens} PDB: 2pqo_A* 2nvr_A 3c0y_A 3c0z_A 3c10_A* 2vqm_A* 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A*
Probab=98.54 E-value=6.2e-08 Score=90.32 Aligned_cols=71 Identities=17% Similarity=0.292 Sum_probs=63.2
Q ss_pred HHHHhhccceeE-------ecCC--CCCCCcCChhhHHHHHHHHHhh-CCCEEEecCCCCCCCccchhhhhhhhhhcccc
Q psy10341 24 KFVRDLNVPLLV-------LGGG--GLGQFSLTTKGHGECVKFVRDL-NVPLLVLGGGGYTLRNVARCWTYETSLLVNEE 93 (213)
Q Consensus 24 ~~vk~~~~p~i~-------L~gD--~Lg~fnLs~~g~~~cv~~v~s~-~~p~llLGGGGY~~~nvAR~Wt~~t~~~~~~~ 93 (213)
..+++|.|.+|+ +.|| |||.|+||.+++++..+.++++ ++|++++++|||++..++++|+.....++|.+
T Consensus 302 p~~~~F~PdlIvvsaG~Da~~gD~dpLg~~~lt~~~y~~~~~~l~~~a~grvv~vlEGGY~l~~l~~~~~a~~~~L~g~~ 381 (421)
T 2pqp_A 302 PIAREFSPDLVLVSAGFDAAEGHPAPLGGYHVSAKCFGYMTQQLMNLAGGAVVLALEGGHDLTAICDASEACVAALLGNR 381 (421)
T ss_dssp HHHHHHCCSEEEEEECCTTBTTCCGGGCCCBBCHHHHHHHHHHHTTSGGGCEEEEECSCCCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhCCCEEEEeCCcccccccccccCCceeCHHHHHHHHHHHHHHcCCCEEEEECCCCChHHHHHHHHHHHHHHcCCC
Confidence 446788888866 6666 9999999999999999999886 88999999999999999999999999999976
Q ss_pred C
Q psy10341 94 I 94 (213)
Q Consensus 94 i 94 (213)
+
T Consensus 382 ~ 382 (421)
T 2pqp_A 382 V 382 (421)
T ss_dssp C
T ss_pred C
Confidence 4
No 12
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens}
Probab=98.50 E-value=3.5e-07 Score=83.85 Aligned_cols=79 Identities=37% Similarity=0.647 Sum_probs=64.3
Q ss_pred ccCCCCCCcccCCccchHHHHHHHHhhccceeEecCCCCCCCcCChhhHHHHHHHHHhhCCCEEEecCCCCCCCccchhh
Q psy10341 3 TLSHDRLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGYTLRNVARCW 82 (213)
Q Consensus 3 ~l~gd~~g~fNl~~~g~~~~v~~vk~~~~p~i~L~gD~Lg~fnLs~~g~~~cv~~v~s~~~p~llLGGGGY~~~nvAR~W 82 (213)
++.+||+|.+|||.+|+.+|.+++++++.|++++.|.+ +++...++||.++++. +
T Consensus 259 ~~~~Dplg~~~lt~~g~~~~~~~~~~~~~p~v~~~eGG-----Y~~~~var~wt~~ta~-----~--------------- 313 (367)
T 3max_A 259 SLSGDRLGCFNLTVKGHAKCVEVVKTFNLPLLMLGGGG-----YTIRNVARCWTYETAV-----A--------------- 313 (367)
T ss_dssp GBTTCSSCCCCBCHHHHHHHHHHHHTTCCCEEEECCCC-----CSHHHHHHHHHHHHHH-----H---------------
T ss_pred CcCCCCCCCeeeCHHHHHHHHHHHHhcCCCEEEEeCCC-----CChhHHHHHHHHHHHH-----H---------------
Confidence 57899999999999999999999999999999988855 5577899999999884 2
Q ss_pred hhhhhhhccccCCCCCCCCccc-ccCCCC
Q psy10341 83 TYETSLLVNEEISNDIPDSLYK-DFFQPD 110 (213)
Q Consensus 83 t~~t~~~~~~~ip~~iP~~~y~-~~y~pd 110 (213)
.+.-+..++|.+ .+.+|| +.|...
T Consensus 314 ---~~~~i~~~~p~~-~~~~~~~p~~~l~ 338 (367)
T 3max_A 314 ---LDCEIPNELPYN-DYFEYFGPDFKLH 338 (367)
T ss_dssp ---TTCCCCSBCCCC-TTGGGGTTTCBSS
T ss_pred ---hhcccccCCCch-hhHHhhCCCeecc
Confidence 335577789987 466555 467643
No 13
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A*
Probab=97.25 E-value=0.00099 Score=60.98 Aligned_cols=54 Identities=22% Similarity=0.298 Sum_probs=47.1
Q ss_pred ccCCCCCCcccCCccchHHHHHHHHhhccceeEecCCCCCCCcCChhhHHHHHHHHHhh
Q psy10341 3 TLSHDRLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGLGQFSLTTKGHGECVKFVRDL 61 (213)
Q Consensus 3 ~l~gd~~g~fNl~~~g~~~~v~~vk~~~~p~i~L~gD~Lg~fnLs~~g~~~cv~~v~s~ 61 (213)
++.+||+|.+|||.+|+.+|.+.++++..|++++.|.+ +++...++||..+.+.
T Consensus 259 a~~~DpLg~l~lt~~g~~~~~~~l~~~a~~vv~vleGG-----Y~~~~l~~~~~~~~~~ 312 (375)
T 1c3p_A 259 PLLEDYLSKFNLSNVAFLKAFNIVREVFGEGVYLGGGG-----YHPYALARAWTLIWCE 312 (375)
T ss_dssp TBTTCTTCSCCBCHHHHHHHHHHHHHHHCSCEEECCCC-----CCHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCcccCHHHHHHHHHHHHHhccceEEEECCC-----CChHHHHHHHHHHHHH
Confidence 57899999999999999999999999999988877744 5667888999999873
No 14
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B}
Probab=96.96 E-value=0.00068 Score=62.03 Aligned_cols=53 Identities=19% Similarity=0.321 Sum_probs=45.4
Q ss_pred ccCCCCCCcccCCccchHHHHHHHHhhccceeEecCCCCCCCcCChhhHHHHHHHHHh
Q psy10341 3 TLSHDRLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGLGQFSLTTKGHGECVKFVRD 60 (213)
Q Consensus 3 ~l~gd~~g~fNl~~~g~~~~v~~vk~~~~p~i~L~gD~Lg~fnLs~~g~~~cv~~v~s 60 (213)
++.+||+|.+|||.+|+.+|.+.+++++.|++++.|.+ +++...++|+.-+.+
T Consensus 303 a~~~Dplg~l~lt~~~~~~~~~~l~~~~~~~v~vleGG-----Y~~~~l~~~~~a~l~ 355 (362)
T 3men_A 303 VYRDDPQSQVAVTTDGFGRLGHLIGALRLPTVIVQEGG-----YHIESLEANARSFFG 355 (362)
T ss_dssp TBTTCTTCCBCBCHHHHHHHHHHHHTTCCCEEEEECCC-----CCHHHHHHHHHHHHH
T ss_pred CcCCCCCCCccCCHHHHHHHHHHHHhhCCCEEEEECCC-----CCHHHHHHHHHHHHH
Confidence 57899999999999999999999999999998866644 667788998876654
No 15
>2vqm_A HD4, histone deacetylase 4; inhibitor, repressor, chromatin, coiled coil, transcription regulation, UBL conjugation, chromatin regulator; HET: HA3; 1.8A {Homo sapiens} PDB: 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A* 3c10_A* 3c0z_A 3c0y_A*
Probab=95.89 E-value=0.0098 Score=54.98 Aligned_cols=54 Identities=15% Similarity=0.192 Sum_probs=44.7
Q ss_pred ccCC--CCCCcccCCccchHHHHHHHHhh-ccceeEecCCCCCCCcCChhhHHHHHHHHHhh
Q psy10341 3 TLSH--DRLGQFSLTTKGHGECVKFVRDL-NVPLLVLGGGGLGQFSLTTKGHGECVKFVRDL 61 (213)
Q Consensus 3 ~l~g--d~~g~fNl~~~g~~~~v~~vk~~-~~p~i~L~gD~Lg~fnLs~~g~~~cv~~v~s~ 61 (213)
++.| |++|.+|||.+|++.+.+.++++ +.|++++.|.+ +++...++||..+.+.
T Consensus 291 a~~~d~D~lg~~~lt~~~~~~~~~~l~~~a~~~~v~vleGG-----Y~~~~l~~~~~~~~~~ 347 (413)
T 2vqm_A 291 AVEGHPTPLGGYNLSARCFGYLTKQLMGLAGGRIVLALEGG-----HDLTAICDASEACVSA 347 (413)
T ss_dssp TBSSCTTTTCCCCBCHHHHHHHHHHHHTSGGGCEEEEECCC-----CCHHHHHHHHHHHHHH
T ss_pred hcCCCCCCCCCcccCHHHHHHHHHHHHHhcCCCEEEEeCcC-----CChHHHHHHHHHHHHH
Confidence 3567 77999999999999999999987 78887765533 5678899999999874
No 16
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A*
Probab=95.72 E-value=0.012 Score=53.63 Aligned_cols=53 Identities=15% Similarity=0.137 Sum_probs=43.0
Q ss_pred ccCCCCCCcccCCccchHHHHHHHHhhc-----cceeEecCCCCCCCcCChhhHHHHHHHHHh
Q psy10341 3 TLSHDRLGQFSLTTKGHGECVKFVRDLN-----VPLLVLGGGGLGQFSLTTKGHGECVKFVRD 60 (213)
Q Consensus 3 ~l~gd~~g~fNl~~~g~~~~v~~vk~~~-----~p~i~L~gD~Lg~fnLs~~g~~~cv~~v~s 60 (213)
++.+||+|.+|||.+|+.++.+.++++. .|++++.|. + ++....++||..+.+
T Consensus 269 a~~~DpLg~l~lt~~g~~~~~~~l~~~a~~~~~g~vv~vleG---G--Y~~~~l~~~~~~~~~ 326 (369)
T 1zz1_A 269 ASMLDPLARMMVTADGFRQMARRTIDCAADICDGRIVFVQEG---G--YSPHYLPFCGLAVIE 326 (369)
T ss_dssp TBTTCTTCCCBBCHHHHHHHHHHHHHHHHHHSTTCEEEEECC---C--CCTTTHHHHHHHHHH
T ss_pred CCCCCCCCCcccCHHHHHHHHHHHHHHHHHhCCCCEEEEECC---C--CCccHHHHHHHHHHH
Confidence 4689999999999999999999998774 567776663 3 445678999988876
No 17
>2pqp_A HD7A, histone deacetylase 7A; HDAC, structural genomics, structural genomics consortium, SGC; HET: TSN; 1.80A {Homo sapiens} PDB: 2pqo_A* 2nvr_A 3c0y_A 3c0z_A 3c10_A* 2vqm_A* 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A*
Probab=78.95 E-value=2 Score=39.85 Aligned_cols=53 Identities=11% Similarity=0.135 Sum_probs=38.9
Q ss_pred ccCCC--CCCcccCCccchHHHHHHHHhh-ccceeEecCCCCCCCcCChhhHHHHHHHHHh
Q psy10341 3 TLSHD--RLGQFSLTTKGHGECVKFVRDL-NVPLLVLGGGGLGQFSLTTKGHGECVKFVRD 60 (213)
Q Consensus 3 ~l~gd--~~g~fNl~~~g~~~~v~~vk~~-~~p~i~L~gD~Lg~fnLs~~g~~~cv~~v~s 60 (213)
++.|| ++|.+|||.++++.+.+.+++. +.+++++.+. +| .+...++|+..+.+
T Consensus 320 a~~gD~dpLg~~~lt~~~y~~~~~~l~~~a~grvv~vlEG---GY--~l~~l~~~~~a~~~ 375 (421)
T 2pqp_A 320 AAEGHPAPLGGYHVSAKCFGYMTQQLMNLAGGAVVLALEG---GH--DLTAICDASEACVA 375 (421)
T ss_dssp TBTTCCGGGCCCBBCHHHHHHHHHHHTTSGGGCEEEEECS---CC--CHHHHHHHHHHHHH
T ss_pred cccccccccCCceeCHHHHHHHHHHHHHHcCCCEEEEECC---CC--ChHHHHHHHHHHHH
Confidence 35676 9999999999999999998776 5677664442 34 45667777776655
No 18
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=74.19 E-value=7.5 Score=30.25 Aligned_cols=50 Identities=14% Similarity=0.243 Sum_probs=34.8
Q ss_pred HHHHHHHHhhccceeEecCCCCCCCcCChhhHHHHHHHHHhhCCCEEEecC
Q psy10341 20 GECVKFVRDLNVPLLVLGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGG 70 (213)
Q Consensus 20 ~~~v~~vk~~~~p~i~L~gD~Lg~fnLs~~g~~~cv~~v~s~~~p~llLGG 70 (213)
..+++.+++..+.+|+++||=. ...-....+.++++.+.+.++|++++-|
T Consensus 22 ~~~~~~~~~~~~D~vi~~GDl~-~~~~~~~~~~~~~~~l~~~~~pv~~v~G 71 (228)
T 1uf3_A 22 EKFVKLAPDTGADAIALIGNLM-PKAAKSRDYAAFFRILSEAHLPTAYVPG 71 (228)
T ss_dssp HHHHTHHHHHTCSEEEEESCSS-CTTCCHHHHHHHHHHHGGGCSCEEEECC
T ss_pred HHHHHHHhhcCCCEEEECCCCC-CCCCCHHHHHHHHHHHHhcCCcEEEECC
Confidence 4455566666788999999943 2222445566788888888889888866
No 19
>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A*
Probab=67.02 E-value=10 Score=33.32 Aligned_cols=52 Identities=13% Similarity=0.329 Sum_probs=38.2
Q ss_pred hHHHHHHHHhhccceeEecCCCCCCCcCChhhHHHHHHHHHhh---CCCEEEecC
Q psy10341 19 HGECVKFVRDLNVPLLVLGGGGLGQFSLTTKGHGECVKFVRDL---NVPLLVLGG 70 (213)
Q Consensus 19 ~~~~v~~vk~~~~p~i~L~gD~Lg~fnLs~~g~~~cv~~v~s~---~~p~llLGG 70 (213)
..++++.+++-++.+|+++||=....+-+.+....+.+.++.+ ++|++++-|
T Consensus 49 l~~~v~~~~~~~~D~VliaGDl~d~~~p~~~~~~~~~~~l~~L~~~~~pv~~v~G 103 (386)
T 3av0_A 49 FKLCIKKILEIKPDVVLHSGDLFNDLRPPVKALRIAMQAFKKLHENNIKVYIVAG 103 (386)
T ss_dssp HHHHHHHHHTTCCSEEEECSCSBSSSSCCHHHHHHHHHHHHHHHHTTCEEEECCC
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEcC
Confidence 4567777777788999999996555555555666677777665 789888876
No 20
>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A
Probab=66.37 E-value=11 Score=32.29 Aligned_cols=52 Identities=17% Similarity=0.296 Sum_probs=38.9
Q ss_pred hHHHHHHHHhhccceeEecCC-CCCCCcCChhhHHHHHHHHHhhC--CCEEEecC
Q psy10341 19 HGECVKFVRDLNVPLLVLGGG-GLGQFSLTTKGHGECVKFVRDLN--VPLLVLGG 70 (213)
Q Consensus 19 ~~~~v~~vk~~~~p~i~L~gD-~Lg~fnLs~~g~~~cv~~v~s~~--~p~llLGG 70 (213)
..++++.+++.++.+++++|| =.-..+-+......+.+++.++. +|++++-|
T Consensus 50 l~~lv~~~~~~~~D~vliaGD~l~d~~~~~~~~~~~~~~~l~~L~~~~pv~~i~G 104 (336)
T 2q8u_A 50 LDKVVEEAEKREVDLILLTGDLLHSRNNPSVVALHDLLDYLKRMMRTAPVVVLPG 104 (336)
T ss_dssp HHHHHHHHHHHTCSEEEEESCSBSCSSCCCHHHHHHHHHHHHHHHHHSCEEECCC
T ss_pred HHHHHHHHHHhCCCEEEECCccccCCCCCCHHHHHHHHHHHHHHHhcCCEEEECC
Confidence 466777788888999999999 65545555555666777777765 89888876
No 21
>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A
Probab=52.80 E-value=35 Score=29.04 Aligned_cols=51 Identities=10% Similarity=0.258 Sum_probs=35.5
Q ss_pred HHHHHHHHhhccceeEecCCCCCCCcCChhhHHHHHHHHHh---hCCCEEEecC
Q psy10341 20 GECVKFVRDLNVPLLVLGGGGLGQFSLTTKGHGECVKFVRD---LNVPLLVLGG 70 (213)
Q Consensus 20 ~~~v~~vk~~~~p~i~L~gD~Lg~fnLs~~g~~~cv~~v~s---~~~p~llLGG 70 (213)
.++++.+++.++.+++++||=+-..+-+.+....+.+.+.. .++|++++-|
T Consensus 30 ~~~~~~~~~~~~D~vl~~GDl~d~~~~~~~~~~~~~~~l~~l~~~~~~v~~v~G 83 (333)
T 1ii7_A 30 KNALEIAVQENVDFILIAGDLFHSSRPSPGTLKKAIALLQIPKEHSIPVFAIEG 83 (333)
T ss_dssp HHHHHHHHHTTCSEEEEESCSBSSSSCCHHHHHHHHHHHHHHHTTTCCEEEECC
T ss_pred HHHHHHHHhcCCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHCCCcEEEeCC
Confidence 56677777888899999999765544454555555555544 4689888766
No 22
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6
Probab=46.31 E-value=34 Score=27.28 Aligned_cols=53 Identities=17% Similarity=0.167 Sum_probs=34.0
Q ss_pred chHHHHHHHHhhccceeEecCCCCCCCcCC-------------------------hhhHHHHHHHHHhhCCCEEEecC
Q psy10341 18 GHGECVKFVRDLNVPLLVLGGGGLGQFSLT-------------------------TKGHGECVKFVRDLNVPLLVLGG 70 (213)
Q Consensus 18 g~~~~v~~vk~~~~p~i~L~gD~Lg~fnLs-------------------------~~g~~~cv~~v~s~~~p~llLGG 70 (213)
...++++.++...+.+|+++||=......+ .+...++++.+++.++|++++-|
T Consensus 20 ~~~~~l~~~~~~~~D~vi~~GDl~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~l~~~~~pv~~v~G 97 (260)
T 2yvt_A 20 LLPKLKGVIAEKQPDILVVVGNILKNEALEKEYERAHLARREPNRKVIHENEHYIIETLDKFFREIGELGVKTFVVPG 97 (260)
T ss_dssp GHHHHHHHHHHHCCSEEEEESCCCCCHHHHHHHHHHHHTTCCCCTHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCCccCcchhhhhhhhhhcccchhhhhHHHHHHHHHHHHHHHHHHhcCCcEEEEcC
Confidence 445677777777888999999943322211 02244566666666789888876
No 23
>3t1i_A Double-strand break repair protein MRE11A; DNA repair, MRN complex, metallophosphatase, exonuclease, endonuclease, RAD50, NBS1, hydrolase; 3.00A {Homo sapiens}
Probab=42.89 E-value=49 Score=30.32 Aligned_cols=41 Identities=20% Similarity=0.440 Sum_probs=33.9
Q ss_pred HHHHHHHHhhccceeEecCCCCCCCcCChhhHHHHHHHHHh
Q psy10341 20 GECVKFVRDLNVPLLVLGGGGLGQFSLTTKGHGECVKFVRD 60 (213)
Q Consensus 20 ~~~v~~vk~~~~p~i~L~gD~Lg~fnLs~~g~~~cv~~v~s 60 (213)
.++++.+++..+.+|+++||=+-..+-+.+....+.+.++.
T Consensus 61 ~~ll~~~~~~~~D~VliaGDlfd~~~~~~~~~~~~~~~L~r 101 (431)
T 3t1i_A 61 DEILRLAQENEVDFILLGGDLFHENKPSRKTLHTCLELLRK 101 (431)
T ss_dssp HHHHHHHHHTTCSEEEECSCCBSSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCEEEEcCccccCCCCCHHHHHHHHHHHHH
Confidence 66778888889999999999877777777888888888874
No 24
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=42.61 E-value=14 Score=26.77 Aligned_cols=48 Identities=17% Similarity=0.242 Sum_probs=35.5
Q ss_pred HHHHHHhhccce-eE------ecCCCCCCCcCChhh-----HHHHHHHHHhhCCCEEEec
Q psy10341 22 CVKFVRDLNVPL-LV------LGGGGLGQFSLTTKG-----HGECVKFVRDLNVPLLVLG 69 (213)
Q Consensus 22 ~v~~vk~~~~p~-i~------L~gD~Lg~fnLs~~g-----~~~cv~~v~s~~~p~llLG 69 (213)
+.+.+++|+.++ |+ +.|.++|.+-+.+.| ..++++|+++.++.+-++|
T Consensus 37 Is~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~~ai~~L~~~~v~vEvlg 96 (98)
T 3ced_A 37 VSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIERQVKMEVLR 96 (98)
T ss_dssp HHHHHHHHTCCCEEEEEEEEEETTEEEEEEEEEESCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHCCcEEEEEEEeEEeCCEeEEEEEEEEeCCCHHHHHHHHHHHHHCCCEEEEec
Confidence 334458898886 22 666789998887666 5678899998888777774
No 25
>3tho_B Exonuclease, putative; adenosine triphosphate, bacterial proteins, DNA breaks, DOUB stranded, DNA repair, DNA repair enzymes; HET: ADP; 2.61A {Thermotoga maritima} PDB: 3qg5_C
Probab=39.72 E-value=51 Score=28.88 Aligned_cols=54 Identities=19% Similarity=0.324 Sum_probs=37.3
Q ss_pred HHHHHHHHhhccceeEecCCCC-CCCcCChhhHHHHHHHHHhhC--CCEEEecCCCCCCC
Q psy10341 20 GECVKFVRDLNVPLLVLGGGGL-GQFSLTTKGHGECVKFVRDLN--VPLLVLGGGGYTLR 76 (213)
Q Consensus 20 ~~~v~~vk~~~~p~i~L~gD~L-g~fnLs~~g~~~cv~~v~s~~--~p~llLGGGGY~~~ 76 (213)
.++++.+++.++.+|+++||=+ -.-+-+........+++..+. +|++++-| |+.
T Consensus 33 ~~l~~~~~~~~~D~vliaGDl~hd~~~~~~~~~~~~~~~l~~l~~~~~v~~i~G---NHD 89 (379)
T 3tho_B 33 DKVVEEAEKREVDLILLTGDLLHSRNNPSVVALHDLLDYLKRMMRTAPVVVLPG---NQD 89 (379)
T ss_dssp HHHHHHHHHHTCSEEEECSCCBSCSSSCCHHHHHHHHHHHHHHHHHSCEEECCC---TTS
T ss_pred HHHHHHHHhcCCCEEEECCCccccCCCCCHHHHHHHHHHHHHHHhCCCEEEEcC---CCc
Confidence 5566777788899999999975 444555555555555554332 89999887 655
No 26
>4fbw_A DNA repair protein RAD32; DNA double-strand break repair, nuclease, hydrolase; HET: DNA; 2.20A {Schizosaccharomyces pombe} PDB: 4fcx_B*
Probab=36.24 E-value=72 Score=29.07 Aligned_cols=42 Identities=19% Similarity=0.310 Sum_probs=34.8
Q ss_pred hHHHHHHHHhhccceeEecCCCCCCCcCChhhHHHHHHHHHh
Q psy10341 19 HGECVKFVRDLNVPLLVLGGGGLGQFSLTTKGHGECVKFVRD 60 (213)
Q Consensus 19 ~~~~v~~vk~~~~p~i~L~gD~Lg~fnLs~~g~~~cv~~v~s 60 (213)
..++++.+++..+.+|+++||=+-...-+.+....+++.++.
T Consensus 41 l~~lv~~~~~~~~D~VliaGDLfd~~~p~~~~~~~~~~~lr~ 82 (417)
T 4fbw_A 41 FNEILEIARERDVDMILLGGDIFHDNKPSRKALYQALRSLRL 82 (417)
T ss_dssp HHHHHHHHHHTTCSEEEECSCCBSSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEcCccccCCCCCHHHHHHHHHHHHH
Confidence 366788888889999999999877777888888888888765
No 27
>4fbk_A DNA repair and telomere maintenance protein NBS1, protein RAD32 chimeric protein; DNA double-strand break repair, nuclease; HET: DNA; 2.38A {Schizosaccharomyces pombe} PDB: 4fbq_A*
Probab=34.28 E-value=81 Score=29.43 Aligned_cols=41 Identities=20% Similarity=0.319 Sum_probs=34.1
Q ss_pred HHHHHHHHhhccceeEecCCCCCCCcCChhhHHHHHHHHHh
Q psy10341 20 GECVKFVRDLNVPLLVLGGGGLGQFSLTTKGHGECVKFVRD 60 (213)
Q Consensus 20 ~~~v~~vk~~~~p~i~L~gD~Lg~fnLs~~g~~~cv~~v~s 60 (213)
.++++.+++..+.+|+++||=+-.-.-+.+....+++.++.
T Consensus 105 ~~lv~~~~~~~~D~VliaGDLfd~~~ps~~a~~~~~~~Lr~ 145 (472)
T 4fbk_A 105 NEILEIARERDVDMILLGGDIFHDNKPSRKALYQALRSLRL 145 (472)
T ss_dssp HHHHHHHHHTTCSEEEECSCSBSSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEcCccccCCCCCHHHHHHHHHHHHH
Confidence 56788888889999999999877777788888888888765
No 28
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=32.96 E-value=87 Score=24.27 Aligned_cols=45 Identities=22% Similarity=0.333 Sum_probs=30.0
Q ss_pred hHHHHHHHHhhccceeEecCCCCCCCcCChhhHHHHHHHHHhhCCCEEEe
Q psy10341 19 HGECVKFVRDLNVPLLVLGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVL 68 (213)
Q Consensus 19 ~~~~v~~vk~~~~p~i~L~gD~Lg~fnLs~~g~~~cv~~v~s~~~p~llL 68 (213)
..++++.+++...|+|+.||.- ..........+++..+++|++..
T Consensus 24 v~~aa~~L~~AkrPvil~G~g~-----~~~~a~~~l~~lae~~~iPV~~t 68 (170)
T 3cf4_G 24 PEMAAKIISKAKRPLLMVGTLA-----LDPELLDRVVKISKAANIPIAAT 68 (170)
T ss_dssp HHHHHHHHHHCSSEEEEECSTT-----CCHHHHHHHHHHHHHHTCCEEEC
T ss_pred HHHHHHHHHcCCCCEEEECCCc-----cchhHHHHHHHHHHHhCCCEEEC
Confidence 3567777788888888877742 22344556666777778887764
No 29
>1su1_A Hypothetical protein YFCE; structural genomics, phosphoesterase, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.25A {Escherichia coli} SCOP: d.159.1.7
Probab=32.92 E-value=43 Score=26.72 Aligned_cols=52 Identities=12% Similarity=0.183 Sum_probs=34.3
Q ss_pred hHHHHHHHHhhccceeEecCCCCCCCcC--Chh--hHHHHHHHHHhhCCCEEEecC
Q psy10341 19 HGECVKFVRDLNVPLLVLGGGGLGQFSL--TTK--GHGECVKFVRDLNVPLLVLGG 70 (213)
Q Consensus 19 ~~~~v~~vk~~~~p~i~L~gD~Lg~fnL--s~~--g~~~cv~~v~s~~~p~llLGG 70 (213)
..++++.+++..+..+++.||-...... ... ...+|++++++...|+.++-|
T Consensus 41 l~~~l~~~~~~~~d~vi~~GDl~~~g~~~~~~~~~~~~~~~~~l~~~~~~v~~V~G 96 (208)
T 1su1_A 41 TERVLELFAQSGAQWLVILGDVLNHGPRNALPEGYAPAKVVERLNEVAHKVIAVRG 96 (208)
T ss_dssp HHHHHHHHHHHTCSEEEECSCCSCCCTTSCCCTTBCHHHHHHHHHTTGGGEEECCC
T ss_pred HHHHHHHHHhcCCCEEEECCCccccCcccccccccCHHHHHHHHHhcCCceEEEEC
Confidence 3556666666678889999996532211 111 247899999988778877655
No 30
>2nxf_A Putative dimetal phosphatase; dinuclear metal center phosphatase, metalloprotein, metallophosphoesterase, protein structure initiative; 1.70A {Danio rerio} SCOP: d.159.1.12
Probab=32.25 E-value=59 Score=26.21 Aligned_cols=51 Identities=14% Similarity=0.071 Sum_probs=32.7
Q ss_pred HHHHHHHHhhccceeEecCCCCCCCc----CChhhHHHHHHHHHhhCCCEEEecC
Q psy10341 20 GECVKFVRDLNVPLLVLGGGGLGQFS----LTTKGHGECVKFVRDLNVPLLVLGG 70 (213)
Q Consensus 20 ~~~v~~vk~~~~p~i~L~gD~Lg~fn----Ls~~g~~~cv~~v~s~~~p~llLGG 70 (213)
.++++.+.+.++.++++.||=..... -+...+..+++.+..+++|++++=|
T Consensus 41 ~~~~~~~~~~~~d~vi~~GD~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~v~G 95 (322)
T 2nxf_A 41 RDAVLQWRRERVQCVVQLGDIIDGHNRRRDASDRALDTVMAELDACSVDVHHVWG 95 (322)
T ss_dssp HHHHHHHHHTTCSEEEECSCCBCTHHHHTTCHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred HHHHHHHHhcCCCEEEECCCccCCCCCcchHHHHHHHHHHHHHHhcCCcEEEecC
Confidence 45555565567788999999533221 0123445577777777889888765
No 31
>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans}
Probab=30.35 E-value=36 Score=32.30 Aligned_cols=47 Identities=21% Similarity=0.314 Sum_probs=32.8
Q ss_pred HHHHHHHHhhccceeEecCCCCCCCcCC--------hhhHHHHHHHHHhhCCCEEEe
Q psy10341 20 GECVKFVRDLNVPLLVLGGGGLGQFSLT--------TKGHGECVKFVRDLNVPLLVL 68 (213)
Q Consensus 20 ~~~v~~vk~~~~p~i~L~gD~Lg~fnLs--------~~g~~~cv~~v~s~~~p~llL 68 (213)
.+.++++.+|+.|+|.|.-=| +|... ++.-++|+.-+....+|.+.+
T Consensus 363 arfi~lcd~~~iPlv~lvDtp--Gf~~G~~~E~~Gi~~~gAk~l~a~a~a~VP~itv 417 (531)
T 3n6r_B 363 ARFVRFCDAFEIPLLTLIDVP--GFLPGTSQEYGGVIKHGAKLLYAYGEATVPMVTV 417 (531)
T ss_dssp HHHHHHHHHTTCCEEEEEEEC--SBCCSHHHHHTTHHHHHHHHHHHHHHCCSCEEEE
T ss_pred HHHHHHhhccCCCEEEEeCCC--CCCCCHHHHHhhHHHHHHHHHHHHHhCCCCEEEE
Confidence 445666778999998754432 34343 445588888888889998765
No 32
>2qsw_A Methionine import ATP-binding protein METN 2; ABC transporter, structural genomics, APC87322.1, PSI-2, protein structure initiative; 1.50A {Enterococcus faecalis} SCOP: d.58.18.13
Probab=30.25 E-value=29 Score=24.85 Aligned_cols=47 Identities=19% Similarity=0.328 Sum_probs=34.8
Q ss_pred HHHHHHhhccce-eE------ecCCCCCCCcCChhh----HHHHHHHHHhhCCCEEEe
Q psy10341 22 CVKFVRDLNVPL-LV------LGGGGLGQFSLTTKG----HGECVKFVRDLNVPLLVL 68 (213)
Q Consensus 22 ~v~~vk~~~~p~-i~------L~gD~Lg~fnLs~~g----~~~cv~~v~s~~~p~llL 68 (213)
+.+.+++|+..+ |+ +.|.++|.+-+.+.| ..+++.|+++.++.+-++
T Consensus 40 is~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v~vEvl 97 (100)
T 2qsw_A 40 ISHIVQEYQVEVSIIQGNIQQTKQGAVGSLYIQLLGEEQNILAAIEGLRKLRVETEVI 97 (100)
T ss_dssp HHHHHHHHTCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEES
T ss_pred HHHHHHHhCCCEEEEEeeceEcCCeeEEEEEEEEECCHHHHHHHHHHHHHcCCEEEEc
Confidence 445568888886 22 666788988887765 567889999888877777
No 33
>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase, phosphatase, metal ION; 1.90A {Enterobacter aerogenes} SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A
Probab=29.86 E-value=1.1e+02 Score=24.20 Aligned_cols=51 Identities=18% Similarity=0.249 Sum_probs=34.6
Q ss_pred chHHHHHHHHhh--ccceeEecCCCCCCCcCChhhHHHHHHHHHhhCCCEEEecC
Q psy10341 18 GHGECVKFVRDL--NVPLLVLGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGG 70 (213)
Q Consensus 18 g~~~~v~~vk~~--~~p~i~L~gD~Lg~fnLs~~g~~~cv~~v~s~~~p~llLGG 70 (213)
...++++.+++. .+.+++++||=...- +...+..+.+.++++++|++++-|
T Consensus 27 ~l~~~l~~~~~~~~~~d~vi~~GDl~~~~--~~~~~~~~~~~l~~l~~p~~~v~G 79 (274)
T 3d03_A 27 ANADVVSQLNALRERPDAVVVSGDIVNCG--RPEEYQVARQILGSLNYPLYLIPG 79 (274)
T ss_dssp HHHHHHHHHHTCSSCCSEEEEESCCBSSC--CHHHHHHHHHHHTTCSSCEEEECC
T ss_pred HHHHHHHHHHhcCCCCCEEEECCCCCCCC--CHHHHHHHHHHHHhcCCCEEEECC
Confidence 346667777665 457899999943221 234466778888888899888766
No 34
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=28.27 E-value=32 Score=25.09 Aligned_cols=48 Identities=23% Similarity=0.403 Sum_probs=36.0
Q ss_pred HHHHHHhhccce-eE------ecCCCCCCCcCChhh----HHHHHHHHHhhCCCEEEec
Q psy10341 22 CVKFVRDLNVPL-LV------LGGGGLGQFSLTTKG----HGECVKFVRDLNVPLLVLG 69 (213)
Q Consensus 22 ~v~~vk~~~~p~-i~------L~gD~Lg~fnLs~~g----~~~cv~~v~s~~~p~llLG 69 (213)
+.+.+++|+..+ |+ +.|.++|.+-+.+.| ..++++|+++.++-+-++|
T Consensus 38 Is~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v~vEvl~ 96 (106)
T 3dhx_A 38 LSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQEHHVKVEVLG 96 (106)
T ss_dssp HHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHCCCEEEEEEEeEEECCeeEEEEEEEEeCCHHHHHHHHHHHHHCCCEEEEee
Confidence 344558999887 22 777799988777755 5678999998888777776
No 35
>1ytl_A Acetyl-COA decarboxylase/synthase complex epsilon 2; structural genomics; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6
Probab=27.40 E-value=74 Score=25.45 Aligned_cols=44 Identities=23% Similarity=0.507 Sum_probs=34.1
Q ss_pred HHH-HHHHHhhccceeEecCCCCCCCcCChhhHHHHHHHHHhhCCCEEEecC
Q psy10341 20 GEC-VKFVRDLNVPLLVLGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGG 70 (213)
Q Consensus 20 ~~~-v~~vk~~~~p~i~L~gD~Lg~fnLs~~g~~~cv~~v~s~~~p~llLGG 70 (213)
.+. ++.+++...|+|++|| - .......+..+++.. ++|++....
T Consensus 25 ~~a~a~lI~~AkRPvIl~Gg-v-----~~~~A~~eL~~~ae~-~iPVvtT~~ 69 (174)
T 1ytl_A 25 GKPVANMIKKAKRPLLIVGP-D-----MTDEMFERVKKFVEK-DITVVATGS 69 (174)
T ss_dssp HHHHHHHHHHCSSEEEEECS-C-----CCHHHHHHHHHHHTS-SSEEEEETT
T ss_pred HHHHHHHHHcCCCCEEEECC-C-----CCccHHHHHHHHHHc-CCCEEEccc
Confidence 566 7888999999999998 5 345566667778878 999998754
No 36
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=27.02 E-value=1.7e+02 Score=20.85 Aligned_cols=47 Identities=15% Similarity=0.212 Sum_probs=36.6
Q ss_pred cchHHHHHHHHhhccceeEecCCCCCCCcCChhhHHHHHHHHHhhCCCEEEec
Q psy10341 17 KGHGECVKFVRDLNVPLLVLGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLG 69 (213)
Q Consensus 17 ~g~~~~v~~vk~~~~p~i~L~gD~Lg~fnLs~~g~~~cv~~v~s~~~p~llLG 69 (213)
.|..++.+-+++-..-+++++.| .+.....+...+....++|++.++
T Consensus 22 ~G~~~v~kai~~gka~lViiA~D------~~~~~~~~i~~~c~~~~vp~~~~~ 68 (101)
T 3v7q_A 22 SGEDLVIKEIRNARAKLVLLTED------ASSNTAKKVTDKCNYYKVPYKKVE 68 (101)
T ss_dssp ESHHHHHHHHHTTCCSEEEEETT------SCHHHHHHHHHHHHHTTCCEEEES
T ss_pred cchhhhHHHHhcCceeEEEEecc------ccccchhhhcccccccCCCeeeec
Confidence 37788999999999999999999 556655665555566799999875
No 37
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=26.94 E-value=1.7e+02 Score=23.14 Aligned_cols=51 Identities=12% Similarity=0.175 Sum_probs=34.7
Q ss_pred HHHHHHHHhhccceeEecCCCCCCCcCChhhHHHHHHHHHhhCC---CEEEecCCCCC
Q psy10341 20 GECVKFVRDLNVPLLVLGGGGLGQFSLTTKGHGECVKFVRDLNV---PLLVLGGGGYT 74 (213)
Q Consensus 20 ~~~v~~vk~~~~p~i~L~gD~Lg~fnLs~~g~~~cv~~v~s~~~---p~llLGGGGY~ 74 (213)
.+.++.+++.++.+|.|+.=- .-+.....+.++.++..+. .-+++||.+.+
T Consensus 129 ~~l~~~~~~~~~d~v~lS~~~----~~~~~~~~~~i~~l~~~~~~~~~~v~vGG~~~~ 182 (210)
T 1y80_A 129 GKFVEAVKKYQPDIVGMSALL----TTTMMNMKSTIDALIAAGLRDRVKVIVGGAPLS 182 (210)
T ss_dssp HHHHHHHHHHCCSEEEEECCS----GGGTHHHHHHHHHHHHTTCGGGCEEEEESTTCC
T ss_pred HHHHHHHHHcCCCEEEEeccc----cccHHHHHHHHHHHHhcCCCCCCeEEEECCCCC
Confidence 567788888899999888731 1245567778888876432 44666776665
No 38
>1s3l_A Hypothetical protein MJ0936; phosphodiesterase, nuclease, structural genomics, BSGC struc funded by NIH; 2.40A {Methanocaldococcus jannaschii} SCOP: d.159.1.7 PDB: 1s3m_A 1s3n_A 2ahd_A
Probab=26.91 E-value=95 Score=24.36 Aligned_cols=44 Identities=18% Similarity=0.209 Sum_probs=31.5
Q ss_pred chHHHHHHHHhhccceeEecCCCCCCCcCChhhHHHHHHHHHhhCCCEEEecC
Q psy10341 18 GHGECVKFVRDLNVPLLVLGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGG 70 (213)
Q Consensus 18 g~~~~v~~vk~~~~p~i~L~gD~Lg~fnLs~~g~~~cv~~v~s~~~p~llLGG 70 (213)
...++++.+++.++.+|++.||=.. .+|++.+++++.|+.++-|
T Consensus 40 ~l~~~l~~~~~~~~D~ii~~GDl~~---------~~~~~~l~~l~~~~~~V~G 83 (190)
T 1s3l_A 40 NIRKAIEIFNDENVETVIHCGDFVS---------LFVIKEFENLNANIIATYG 83 (190)
T ss_dssp HHHHHHHHHHHSCCSEEEECSCCCS---------THHHHHGGGCSSEEEEECC
T ss_pred HHHHHHHHHhhcCCCEEEECCCCCC---------HHHHHHHHhcCCCEEEEeC
Confidence 3455666666667888999999421 1688888887788887765
No 39
>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B
Probab=26.76 E-value=67 Score=30.64 Aligned_cols=47 Identities=21% Similarity=0.279 Sum_probs=31.9
Q ss_pred HHHHHHHHhhccceeEecCCCCCCCcCC--------hhhHHHHHHHHHhhCCCEEEe
Q psy10341 20 GECVKFVRDLNVPLLVLGGGGLGQFSLT--------TKGHGECVKFVRDLNVPLLVL 68 (213)
Q Consensus 20 ~~~v~~vk~~~~p~i~L~gD~Lg~fnLs--------~~g~~~cv~~v~s~~~p~llL 68 (213)
.+.++++.+|+.|+|.|.-=| +|... ++.-++|+.-+....+|.+.+
T Consensus 377 arfi~~c~~~~iPlv~lvDtp--Gf~~G~~~E~~Gi~~~gAk~~~a~~~a~vP~itv 431 (555)
T 3u9r_B 377 AHFIELACQRGIPLLFLQNIT--GFMVGQKYEAGGIAKHGAKLVTAVACARVPKFTV 431 (555)
T ss_dssp HHHHHHHHHHTCCEEEEEEEC--CBCCSHHHHHTTHHHHHHHHHHHHHHCCSCEEEE
T ss_pred HHHHHHHhcCCCCEEEEecCc--CCCCCHHHHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 456666779999998754322 33333 344578888888889998765
No 40
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=26.23 E-value=1.7e+02 Score=21.48 Aligned_cols=52 Identities=15% Similarity=0.142 Sum_probs=33.2
Q ss_pred HHHHHHHHhh-ccceeEecCCCCCCCcCChhhHHHHHHHHHhhCCCEEEecCCC
Q psy10341 20 GECVKFVRDL-NVPLLVLGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGG 72 (213)
Q Consensus 20 ~~~v~~vk~~-~~p~i~L~gD~Lg~fnLs~~g~~~cv~~v~s~~~p~llLGGGG 72 (213)
.++.+++... ..|.+++.+..++ .....+....+++.+...+..+++.+||.
T Consensus 9 ~~~~~~l~~~~~~~~vlv~~Gs~~-~~~~~~~~~~~~~al~~~~~~~~~~~g~~ 61 (170)
T 2o6l_A 9 KEMEDFVQSSGENGVVVFSLGSMV-SNMTEERANVIASALAQIPQKVLWRFDGN 61 (170)
T ss_dssp HHHHHHHHTTTTTCEEEEECCSCC-TTCCHHHHHHHHHHHTTSSSEEEEECCSS
T ss_pred HHHHHHHHcCCCCCEEEEECCCCc-ccCCHHHHHHHHHHHHhCCCeEEEEECCc
Confidence 3556666543 3466776666554 23456677778887777677777777765
No 41
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=25.50 E-value=44 Score=26.07 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=21.0
Q ss_pred HHHHHHHHHhhCCCEEEecCCCCC
Q psy10341 51 HGECVKFVRDLNVPLLVLGGGGYT 74 (213)
Q Consensus 51 ~~~cv~~v~s~~~p~llLGGGGY~ 74 (213)
..+.++.+++.+.|+|++|||.-.
T Consensus 24 v~~aa~~L~~AkrPvil~G~g~~~ 47 (170)
T 3cf4_G 24 PEMAAKIISKAKRPLLMVGTLALD 47 (170)
T ss_dssp HHHHHHHHHHCSSEEEEECSTTCC
T ss_pred HHHHHHHHHcCCCCEEEECCCccc
Confidence 678889999999999999998754
No 42
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=24.53 E-value=1.9e+02 Score=20.52 Aligned_cols=47 Identities=21% Similarity=0.357 Sum_probs=35.3
Q ss_pred cchHHHHHHHHhhccceeEecCCCCCCCcCChhhHHHHHHHHHhhCCCEEEec
Q psy10341 17 KGHGECVKFVRDLNVPLLVLGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLG 69 (213)
Q Consensus 17 ~g~~~~v~~vk~~~~p~i~L~gD~Lg~fnLs~~g~~~cv~~v~s~~~p~llLG 69 (213)
.|..++.+-+++-..-+++++.| .+.....+...+....++|++..+
T Consensus 21 ~G~~~v~kai~~gka~lViiA~D------~~~~~~~~i~~~c~~~~ip~~~~~ 67 (101)
T 3on1_A 21 TGEEQVVKAVQNGQVTLVILSSD------AGIHTKKKLLDKCGSYQIPVKVVG 67 (101)
T ss_dssp ESHHHHHHHHHTTCCSEEEEETT------SCHHHHHHHHHHHHHHTCCEEEES
T ss_pred ECHHHHHHHHHcCCCcEEEEeCC------CCHHHHHHHHHHHHHcCCCEEEeC
Confidence 37788889999988999999999 455555554444556799998875
No 43
>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4
Probab=23.38 E-value=46 Score=31.41 Aligned_cols=49 Identities=14% Similarity=0.314 Sum_probs=32.9
Q ss_pred HHHHHHHHhhccceeEecCCC---CC---CCcCChhhHHHHHHHHHhhCCCEEEe
Q psy10341 20 GECVKFVRDLNVPLLVLGGGG---LG---QFSLTTKGHGECVKFVRDLNVPLLVL 68 (213)
Q Consensus 20 ~~~v~~vk~~~~p~i~L~gD~---Lg---~fnLs~~g~~~cv~~v~s~~~p~llL 68 (213)
.+.++.+.+|+.|+|.|.-=| .| ...=.++..++|+.-+....+|.+.+
T Consensus 355 ar~i~~a~~~~~Plv~lvDtpG~~~G~~~E~~g~~~~~A~~~~a~~~~~vP~isv 409 (527)
T 1vrg_A 355 ARFIRFLDAFNIPILTFVDTPGYLPGVAQEHGGIIRHGAKLLYAYSEATVPKITV 409 (527)
T ss_dssp HHHHHHHHHTTCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEE
T ss_pred HHHHHHHhhcCCCeEEEecCCCCcCchhhHHhHHHHHHHHHHHHHhcCCCCEEEE
Confidence 456666789999998754322 11 12224567788888888889998766
No 44
>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*
Probab=22.52 E-value=47 Score=31.91 Aligned_cols=47 Identities=15% Similarity=0.182 Sum_probs=32.2
Q ss_pred HHHHHHHHhhccceeEecCCCCCCCcCC--------hhhHHHHHHHHHhhCCCEEEe
Q psy10341 20 GECVKFVRDLNVPLLVLGGGGLGQFSLT--------TKGHGECVKFVRDLNVPLLVL 68 (213)
Q Consensus 20 ~~~v~~vk~~~~p~i~L~gD~Lg~fnLs--------~~g~~~cv~~v~s~~~p~llL 68 (213)
.+.++++.+|++|+|.|.-=| +|... ++.-++++.-+....+|.+.+
T Consensus 398 arfi~lcd~f~iPlv~lvDtp--Gf~~G~~aE~~Gi~~~gAk~l~a~a~a~VP~itv 452 (588)
T 3gf3_A 398 NEFVTLCARDRIPLIWLQDTT--GIDVGDEAEKAELLGLGQSLIYSIENSKLPSLEI 452 (588)
T ss_dssp HHHHHHHHHTTCCEEEEECCC--EECCSHHHHHTTHHHHHHHHHHHHHHHCSCEEEE
T ss_pred HHHHHHhhhcCCCeEEEecCC--CCCCCHHHHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 445566679999998865432 33333 445577888888889998776
No 45
>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*
Probab=20.91 E-value=56 Score=30.78 Aligned_cols=47 Identities=21% Similarity=0.311 Sum_probs=31.5
Q ss_pred HHHHHHHHhhccceeEecCCCCCCCcCC--------hhhHHHHHHHHHhhCCCEEEe
Q psy10341 20 GECVKFVRDLNVPLLVLGGGGLGQFSLT--------TKGHGECVKFVRDLNVPLLVL 68 (213)
Q Consensus 20 ~~~v~~vk~~~~p~i~L~gD~Lg~fnLs--------~~g~~~cv~~v~s~~~p~llL 68 (213)
.+.++++.+|+.|+|.|.-=| +|-.. ++.-++|+.-+....+|++.+
T Consensus 351 ar~i~~~~~~~iPlv~lvDtp--Gf~~G~~~E~~Gi~~~~A~~l~a~a~~~vP~itv 405 (523)
T 1on3_A 351 AEFVNFCDSFNIPLVQLVDVP--GFLPGVQQEYGGIIRHGAKMLYAYSEATVPKITV 405 (523)
T ss_dssp HHHHHHHHHTTCCEEEEEEEC--CBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEE
T ss_pred HHHHHHHHhcCCCeEEEEeCC--CcCcchHHHHhhHHHHHHHHHHHHhcCCCCEEEE
Confidence 456666789999998754422 22222 445577887777889998766
No 46
>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4
Probab=20.63 E-value=54 Score=31.45 Aligned_cols=47 Identities=9% Similarity=0.142 Sum_probs=31.4
Q ss_pred HHHHHHHHhhccceeEecCCCCCCCcCC--------hhhHHHHHHHHHhhCCCEEEe
Q psy10341 20 GECVKFVRDLNVPLLVLGGGGLGQFSLT--------TKGHGECVKFVRDLNVPLLVL 68 (213)
Q Consensus 20 ~~~v~~vk~~~~p~i~L~gD~Lg~fnLs--------~~g~~~cv~~v~s~~~p~llL 68 (213)
.+.++++..|+.|+|.|.-=| +|-.. ++.-++++.-+....+|.+.+
T Consensus 396 arfi~~c~~~~iPlv~lvDtp--Gf~~G~~~E~~Gi~~~gA~~~~a~a~a~vP~itv 450 (587)
T 1pix_A 396 NEFVTLCARDRLPIVWIQDTT--GIDVGNDAEKAELLGLGQSLIYSIQTSHIPQFEI 450 (587)
T ss_dssp HHHHHHHHHTTCCEEEEECCC--EECCSHHHHHTTHHHHHHHHHHHHHTCCCCEEEE
T ss_pred HHHHHHhhcCCCCeEEEecCC--CCCCcHHHHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 456666789999998855432 33333 344567777777789998765
Done!