RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10341
         (213 letters)



>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 364

 Score =  117 bits (294), Expect = 3e-32
 Identities = 36/104 (34%), Positives = 58/104 (55%), Gaps = 1/104 (0%)

Query: 41  LGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGYTLRNVARCWTYETSLLVNEEISNDIPD 100
           +  F++T  G G+C+K++    +  L+LGGGGY L N ARCWTY T +++ + +S++IPD
Sbjct: 261 MCSFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYLTGVILGKTLSSEIPD 320

Query: 101 SLYKDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMV 144
             +   + PDY L         + N    ++ I   +  NLK V
Sbjct: 321 HEFFTAYGPDYVLEIT-PSCRPDRNEPHRIQQILNYIKGNLKHV 363


>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId:
           63363]}
          Length = 372

 Score = 83.4 bits (205), Expect = 1e-19
 Identities = 23/105 (21%), Positives = 41/105 (39%), Gaps = 3/105 (2%)

Query: 41  LGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGYTLRNVARCWTYETSLLVNEEISNDIPD 100
           L +F+L+     +    VR++    + LGGGGY    +AR WT     L   E+   + +
Sbjct: 264 LSKFNLSNVAFLKAFNIVREVFGEGVYLGGGGYHPYALARAWTLIWCELSGREVPEKLNN 323

Query: 101 SLYKDFFQPDYNLHPEFV---HKHDNANSKQYLELITKTVYDNLK 142
              +     D+    + V   +  +          + K V D L+
Sbjct: 324 KAKELLKSIDFEEFDDEVDRSYMLETLKDPWRGGEVRKEVKDTLE 368


>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 386

 Score = 60.0 bits (144), Expect = 2e-11
 Identities = 15/105 (14%), Positives = 35/105 (33%), Gaps = 17/105 (16%)

Query: 41  LGQFSLTTKGHGECVKFVRDL-NVPLLVLGGGGYTLRNVARCWTYETSLLVNEEISNDIP 99
           LG + ++ K  G   + + +L    +++   GG+ L  +        + L+   +     
Sbjct: 296 LGGYHVSAKCFGYMTQQLMNLAGGAVVLALEGGHDLTAICDASEACVAALLGNRVD---- 351

Query: 100 DSLYKDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMV 144
                        L  E   +  N N+ + LE + +        +
Sbjct: 352 ------------PLSEEGWKQKPNLNAIRSLEAVIRVHSKYWGCM 384


>d3bona1 d.92.1.7 (A:3-419) Botulinum neurotoxin {Clostridium
           botulinum, serotype A [TaxId: 1491]}
          Length = 417

 Score = 27.1 bits (60), Expect = 1.9
 Identities = 5/30 (16%), Positives = 8/30 (26%)

Query: 84  YETSLLVNEEISNDIPDSLYKDFFQPDYNL 113
             T       +         K+ F+  Y L
Sbjct: 292 ASTLNKAKSIVGTTASLQYMKNVFKEKYLL 321


>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor
           CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}
          Length = 133

 Score = 26.1 bits (57), Expect = 2.0
 Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 4/35 (11%)

Query: 166 AVLDEMDPDIKNPQLEEDKRVDPANEFYDGDNDQD 200
           A+LD  D  ++ P L++   V     F D  + Q+
Sbjct: 5   ALLDGRDCTVEMPILKDVATVA----FCDAQSTQE 35


>d1k4na_ d.32.1.5 (A:) Hypothetical protein YecM (EC4020)
           {Escherichia coli [TaxId: 562]}
          Length = 190

 Score = 24.3 bits (53), Expect = 9.5
 Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 4/43 (9%)

Query: 143 MVAFSPSVQMQDMIGD--VFTRDIGAVLDEMDPDIKNPQLEED 183
           M  +    ++QD+  D   F   +  +   +  +I    L  D
Sbjct: 5   MANWQSIDELQDIASDLPRFIHALDELSRRLGLNIT--PLTAD 45


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.139    0.427 

Gapped
Lambda     K      H
   0.267   0.0446    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 816,750
Number of extensions: 37634
Number of successful extensions: 91
Number of sequences better than 10.0: 1
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 11
Length of query: 213
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 131
Effective length of database: 1,281,736
Effective search space: 167907416
Effective search space used: 167907416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.1 bits)