BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10342
(285 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A69|A Chain A, Structure Of Hdac3 Bound To Corepressor And Inositol
Tetraphosphate
pdb|4A69|B Chain B, Structure Of Hdac3 Bound To Corepressor And Inositol
Tetraphosphate
Length = 376
Score = 363 bits (932), Expect = e-101, Method: Compositional matrix adjust.
Identities = 170/242 (70%), Positives = 201/242 (83%)
Query: 4 KTVSYFYNPDVGNFHYGAKHPMKPHRLSVINSLILGYGLHKKMQIYRPYKASYHDMCRFH 63
KTV+YFY+PDVGNFHYGA HPMKPHRL++ +SL+L YGL+KKM +++PY+AS HDMCRFH
Sbjct: 3 KTVAYFYDPDVGNFHYGAGHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCRFH 62
Query: 64 SAEYIDFLHTVSPDKIHEHTKFLCQFASGEDCPIFHGLYDFCSMYTGASLEGAIQLNNNC 123
S +YIDFL VSP + TK L F G+DCP+F GL++FCS YTGASL+GA QLNN
Sbjct: 63 SEDYIDFLQRVSPTNMQGFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKI 122
Query: 124 CDIAINWSGGLHHAKKSEASGFCYVNDIVIAILELLKYHPRVLYIDIDVHHGDGVQDAFY 183
CDIAINW+GGLHHAKK EASGFCYVNDIVI ILELLKYHPRVLYIDID+HHGDGVQ+AFY
Sbjct: 123 CDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLKYHPRVLYIDIDIHHGDGVQEAFY 182
Query: 184 LTDRVMTVSFHKYGGGFFPCSGDMYEIGAEGGRYYSVNVRNRDLSPHSSHKRMFRERVHS 243
LTDRVMTVSFHKYG FFP +GDMYE+GAE GRYY +NV RD S+K +F+ ++
Sbjct: 183 LTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYKHLFQPVINQ 242
Query: 244 LL 245
++
Sbjct: 243 VV 244
>pdb|3MAX|A Chain A, Crystal Structure Of Human Hdac2 Complexed With An
N-(2-Amin Benzamide
pdb|3MAX|B Chain B, Crystal Structure Of Human Hdac2 Complexed With An
N-(2-Amin Benzamide
pdb|3MAX|C Chain C, Crystal Structure Of Human Hdac2 Complexed With An
N-(2-Amin Benzamide
Length = 367
Score = 310 bits (793), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 139/244 (56%), Positives = 192/244 (78%), Gaps = 1/244 (0%)
Query: 2 SNKTVSYFYNPDVGNFHYGAKHPMKPHRLSVINSLILGYGLHKKMQIYRPYKASYHDMCR 61
+ K V Y+Y+ D+GN++YG HPMKPHR+ + ++L+L YGL++KM+IYRP+KA+ +M +
Sbjct: 1 AKKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATAEEMTK 60
Query: 62 FHSAEYIDFLHTVSPDKIHEHTKFLCQFASGEDCPIFHGLYDFCSMYTGASLEGAIQLNN 121
+HS EYI FL ++ PD + E++K + +F GEDCP+F GL++FC + TG S+ GA++LN
Sbjct: 61 YHSDEYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAGAVKLNR 120
Query: 122 NCCDIAINWSGGLHHAKKSEASGFCYVNDIVIAILELLKYHPRVLYIDIDVHHGDGVQDA 181
D+A+NW+GGLHHAKKSEASGFCYVNDIV+AILELLKYH RVLYIDID+HHGDGV++A
Sbjct: 121 QQTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEEA 180
Query: 182 FYLTDRVMTVSFHKYGGGFFPCSGDMYEIGAEGGRYYSVNVRNRDLSPHSSHKRMFRERV 241
FY TDRVMTVSFHKY G +FP +GD+ +IGA G+YY+VN RD S+ ++F+ +
Sbjct: 181 FYTTDRVMTVSFHKY-GEYFPGTGDLRDIGAGKGKYYAVNFPMRDGIDDESYGQIFKPII 239
Query: 242 HSLL 245
++
Sbjct: 240 SKVM 243
>pdb|2V5W|A Chain A, Crystal Structure Of Hdac8-Substrate Complex
pdb|2V5W|B Chain B, Crystal Structure Of Hdac8-Substrate Complex
Length = 388
Score = 205 bits (521), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 97/200 (48%), Positives = 134/200 (67%), Gaps = 1/200 (0%)
Query: 27 PHRLSVINSLILGYGLHKKMQIYRPYKASYHDMCRFHSAEYIDFLHTVSPDKIHEHTKFL 86
P R S+++SLI Y LHK+M+I +P AS +M FH+ Y+ L VS + +H +
Sbjct: 35 PKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQEGDDDHPDSI 94
Query: 87 CQFASGEDCPIFHGLYDFCSMYTGASLEGAIQLNNNCCDIAINWSGGLHHAKKSEASGFC 146
++ G DCP G++D+ + GA++ A L + C +AINWSGG HHAKK EASGFC
Sbjct: 95 -EYGLGYDCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFC 153
Query: 147 YVNDIVIAILELLKYHPRVLYIDIDVHHGDGVQDAFYLTDRVMTVSFHKYGGGFFPCSGD 206
Y+ND V+ IL L + R+LY+D+D+HHGDGV+DAF T +VMTVS HK+ GFFP +GD
Sbjct: 154 YLNDAVLGILRLRRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGD 213
Query: 207 MYEIGAEGGRYYSVNVRNRD 226
+ ++G GRYYSVNV +D
Sbjct: 214 VSDVGLGKGRYYSVNVPIQD 233
>pdb|3SFF|A Chain A, Crystal Structure Of Human Hdac8 Inhibitor Complex, An
Amino Acid Derived Inhibitor
pdb|3SFH|A Chain A, Crystal Structure Of Human Hdac8 Inhibitor Complex, An
Amino Acid Derived Inhibitor
Length = 378
Score = 205 bits (521), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 97/200 (48%), Positives = 134/200 (67%), Gaps = 1/200 (0%)
Query: 27 PHRLSVINSLILGYGLHKKMQIYRPYKASYHDMCRFHSAEYIDFLHTVSPDKIHEHTKFL 86
P R S+++SLI Y LHK+M+I +P AS +M FH+ Y+ L VS + +H +
Sbjct: 36 PKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQEGDDDHPDSI 95
Query: 87 CQFASGEDCPIFHGLYDFCSMYTGASLEGAIQLNNNCCDIAINWSGGLHHAKKSEASGFC 146
++ G DCP G++D+ + GA++ A L + C +AINWSGG HHAKK EASGFC
Sbjct: 96 -EYGLGYDCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFC 154
Query: 147 YVNDIVIAILELLKYHPRVLYIDIDVHHGDGVQDAFYLTDRVMTVSFHKYGGGFFPCSGD 206
Y+ND V+ IL L + R+LY+D+D+HHGDGV+DAF T +VMTVS HK+ GFFP +GD
Sbjct: 155 YLNDAVLGILRLRRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGD 214
Query: 207 MYEIGAEGGRYYSVNVRNRD 226
+ ++G GRYYSVNV +D
Sbjct: 215 VSDVGLGKGRYYSVNVPIQD 234
>pdb|3F07|A Chain A, Crystal Structure Analysis Of Human Hdac8 Complexed With
Apha In A New Monoclinic Crystal Form
pdb|3F07|B Chain B, Crystal Structure Analysis Of Human Hdac8 Complexed With
Apha In A New Monoclinic Crystal Form
pdb|3F07|C Chain C, Crystal Structure Analysis Of Human Hdac8 Complexed With
Apha In A New Monoclinic Crystal Form
pdb|3F0R|A Chain A, Crystal Structure Analysis Of Human Hdac8 Complexed With
Trichostatin A In A New Monoclinic Crystal Form
pdb|3F0R|B Chain B, Crystal Structure Analysis Of Human Hdac8 Complexed With
Trichostatin A In A New Monoclinic Crystal Form
pdb|3F0R|C Chain C, Crystal Structure Analysis Of Human Hdac8 Complexed With
Trichostatin A In A New Monoclinic Crystal Form
Length = 388
Score = 205 bits (521), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 97/200 (48%), Positives = 134/200 (67%), Gaps = 1/200 (0%)
Query: 27 PHRLSVINSLILGYGLHKKMQIYRPYKASYHDMCRFHSAEYIDFLHTVSPDKIHEHTKFL 86
P R S+++SLI Y LHK+M+I +P AS +M FH+ Y+ L VS + +H +
Sbjct: 35 PKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQEGDDDHPDSI 94
Query: 87 CQFASGEDCPIFHGLYDFCSMYTGASLEGAIQLNNNCCDIAINWSGGLHHAKKSEASGFC 146
++ G DCP G++D+ + GA++ A L + C +AINWSGG HHAKK EASGFC
Sbjct: 95 -EYGLGYDCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFC 153
Query: 147 YVNDIVIAILELLKYHPRVLYIDIDVHHGDGVQDAFYLTDRVMTVSFHKYGGGFFPCSGD 206
Y+ND V+ IL L + R+LY+D+D+HHGDGV+DAF T +VMTVS HK+ GFFP +GD
Sbjct: 154 YLNDAVLGILRLRRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGD 213
Query: 207 MYEIGAEGGRYYSVNVRNRD 226
+ ++G GRYYSVNV +D
Sbjct: 214 VSDVGLGKGRYYSVNVPIQD 233
>pdb|1T64|A Chain A, Crystal Structure Of Human Hdac8 Complexed With
Trichostatin A
pdb|1T64|B Chain B, Crystal Structure Of Human Hdac8 Complexed With
Trichostatin A
pdb|1T67|A Chain A, Crystal Structure Of Human Hdac8 Complexed With Ms-344
pdb|1T69|A Chain A, Crystal Structure Of Human Hdac8 Complexed With Saha
pdb|1VKG|A Chain A, Crystal Structure Of Human Hdac8 Complexed With Cra-19156
pdb|1VKG|B Chain B, Crystal Structure Of Human Hdac8 Complexed With Cra-19156
pdb|1W22|A Chain A, Crystal Structure Of Inhibited Human Hdac8
pdb|1W22|B Chain B, Crystal Structure Of Inhibited Human Hdac8
Length = 377
Score = 205 bits (521), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 97/200 (48%), Positives = 134/200 (67%), Gaps = 1/200 (0%)
Query: 27 PHRLSVINSLILGYGLHKKMQIYRPYKASYHDMCRFHSAEYIDFLHTVSPDKIHEHTKFL 86
P R S+++SLI Y LHK+M+I +P AS +M FH+ Y+ L VS + +H +
Sbjct: 35 PKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQEGDDDHPDSI 94
Query: 87 CQFASGEDCPIFHGLYDFCSMYTGASLEGAIQLNNNCCDIAINWSGGLHHAKKSEASGFC 146
++ G DCP G++D+ + GA++ A L + C +AINWSGG HHAKK EASGFC
Sbjct: 95 -EYGLGYDCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFC 153
Query: 147 YVNDIVIAILELLKYHPRVLYIDIDVHHGDGVQDAFYLTDRVMTVSFHKYGGGFFPCSGD 206
Y+ND V+ IL L + R+LY+D+D+HHGDGV+DAF T +VMTVS HK+ GFFP +GD
Sbjct: 154 YLNDAVLGILRLRRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGD 213
Query: 207 MYEIGAEGGRYYSVNVRNRD 226
+ ++G GRYYSVNV +D
Sbjct: 214 VSDVGLGKGRYYSVNVPIQD 233
>pdb|3MZ3|A Chain A, Crystal Structure Of Co2+ Hdac8 Complexed With M344
pdb|3MZ3|B Chain B, Crystal Structure Of Co2+ Hdac8 Complexed With M344
pdb|3RQD|A Chain A, Ideal Thiolate-Zinc Coordination Geometry In Depsipeptide
Binding To Histone Deacetylase 8
pdb|3RQD|B Chain B, Ideal Thiolate-Zinc Coordination Geometry In Depsipeptide
Binding To Histone Deacetylase 8
Length = 389
Score = 205 bits (521), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 97/200 (48%), Positives = 134/200 (67%), Gaps = 1/200 (0%)
Query: 27 PHRLSVINSLILGYGLHKKMQIYRPYKASYHDMCRFHSAEYIDFLHTVSPDKIHEHTKFL 86
P R S+++SLI Y LHK+M+I +P AS +M FH+ Y+ L VS + +H +
Sbjct: 35 PKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQEGDDDHPDSI 94
Query: 87 CQFASGEDCPIFHGLYDFCSMYTGASLEGAIQLNNNCCDIAINWSGGLHHAKKSEASGFC 146
++ G DCP G++D+ + GA++ A L + C +AINWSGG HHAKK EASGFC
Sbjct: 95 -EYGLGYDCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFC 153
Query: 147 YVNDIVIAILELLKYHPRVLYIDIDVHHGDGVQDAFYLTDRVMTVSFHKYGGGFFPCSGD 206
Y+ND V+ IL L + R+LY+D+D+HHGDGV+DAF T +VMTVS HK+ GFFP +GD
Sbjct: 154 YLNDAVLGILRLRRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGD 213
Query: 207 MYEIGAEGGRYYSVNVRNRD 226
+ ++G GRYYSVNV +D
Sbjct: 214 VSDVGLGKGRYYSVNVPIQD 233
>pdb|3EZT|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101e Variant
pdb|3EZT|B Chain B, Crystal Structure Analysis Of Human Hdac8 D101e Variant
Length = 388
Score = 203 bits (517), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 96/200 (48%), Positives = 134/200 (67%), Gaps = 1/200 (0%)
Query: 27 PHRLSVINSLILGYGLHKKMQIYRPYKASYHDMCRFHSAEYIDFLHTVSPDKIHEHTKFL 86
P R S+++SLI Y LHK+M+I +P AS +M FH+ Y+ L VS + +H +
Sbjct: 35 PKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQEGDDDHPDSI 94
Query: 87 CQFASGEDCPIFHGLYDFCSMYTGASLEGAIQLNNNCCDIAINWSGGLHHAKKSEASGFC 146
++ G +CP G++D+ + GA++ A L + C +AINWSGG HHAKK EASGFC
Sbjct: 95 -EYGLGYECPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFC 153
Query: 147 YVNDIVIAILELLKYHPRVLYIDIDVHHGDGVQDAFYLTDRVMTVSFHKYGGGFFPCSGD 206
Y+ND V+ IL L + R+LY+D+D+HHGDGV+DAF T +VMTVS HK+ GFFP +GD
Sbjct: 154 YLNDAVLGILRLRRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGD 213
Query: 207 MYEIGAEGGRYYSVNVRNRD 226
+ ++G GRYYSVNV +D
Sbjct: 214 VSDVGLGKGRYYSVNVPIQD 233
>pdb|2V5X|A Chain A, Crystal Structure Of Hdac8-Inhibitor Complex
pdb|2V5X|B Chain B, Crystal Structure Of Hdac8-Inhibitor Complex
Length = 388
Score = 203 bits (517), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 96/200 (48%), Positives = 133/200 (66%), Gaps = 1/200 (0%)
Query: 27 PHRLSVINSLILGYGLHKKMQIYRPYKASYHDMCRFHSAEYIDFLHTVSPDKIHEHTKFL 86
P R +++SLI Y LHK+M+I +P AS +M FH+ Y+ L VS + +H +
Sbjct: 35 PKRADMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQEGDDDHPDSI 94
Query: 87 CQFASGEDCPIFHGLYDFCSMYTGASLEGAIQLNNNCCDIAINWSGGLHHAKKSEASGFC 146
++ G DCP G++D+ + GA++ A L + C +AINWSGG HHAKK EASGFC
Sbjct: 95 -EYGLGYDCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFC 153
Query: 147 YVNDIVIAILELLKYHPRVLYIDIDVHHGDGVQDAFYLTDRVMTVSFHKYGGGFFPCSGD 206
Y+ND V+ IL L + R+LY+D+D+HHGDGV+DAF T +VMTVS HK+ GFFP +GD
Sbjct: 154 YLNDAVLGILRLRRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGD 213
Query: 207 MYEIGAEGGRYYSVNVRNRD 226
+ ++G GRYYSVNV +D
Sbjct: 214 VSDVGLGKGRYYSVNVPIQD 233
>pdb|3EZP|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101n Variant
pdb|3EZP|B Chain B, Crystal Structure Analysis Of Human Hdac8 D101n Variant
Length = 388
Score = 203 bits (516), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 96/200 (48%), Positives = 134/200 (67%), Gaps = 1/200 (0%)
Query: 27 PHRLSVINSLILGYGLHKKMQIYRPYKASYHDMCRFHSAEYIDFLHTVSPDKIHEHTKFL 86
P R S+++SLI Y LHK+M+I +P AS +M FH+ Y+ L VS + +H +
Sbjct: 35 PKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQEGDDDHPDSI 94
Query: 87 CQFASGEDCPIFHGLYDFCSMYTGASLEGAIQLNNNCCDIAINWSGGLHHAKKSEASGFC 146
++ G +CP G++D+ + GA++ A L + C +AINWSGG HHAKK EASGFC
Sbjct: 95 -EYGLGYNCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFC 153
Query: 147 YVNDIVIAILELLKYHPRVLYIDIDVHHGDGVQDAFYLTDRVMTVSFHKYGGGFFPCSGD 206
Y+ND V+ IL L + R+LY+D+D+HHGDGV+DAF T +VMTVS HK+ GFFP +GD
Sbjct: 154 YLNDAVLGILRLRRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGD 213
Query: 207 MYEIGAEGGRYYSVNVRNRD 226
+ ++G GRYYSVNV +D
Sbjct: 214 VSDVGLGKGRYYSVNVPIQD 233
>pdb|3F06|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101a Variant.
pdb|3F06|B Chain B, Crystal Structure Analysis Of Human Hdac8 D101a Variant
Length = 388
Score = 202 bits (514), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 96/200 (48%), Positives = 133/200 (66%), Gaps = 1/200 (0%)
Query: 27 PHRLSVINSLILGYGLHKKMQIYRPYKASYHDMCRFHSAEYIDFLHTVSPDKIHEHTKFL 86
P R S+++SLI Y LHK+M+I +P AS +M FH+ Y+ L VS + +H +
Sbjct: 35 PKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQEGDDDHPDSI 94
Query: 87 CQFASGEDCPIFHGLYDFCSMYTGASLEGAIQLNNNCCDIAINWSGGLHHAKKSEASGFC 146
++ G CP G++D+ + GA++ A L + C +AINWSGG HHAKK EASGFC
Sbjct: 95 -EYGLGYACPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFC 153
Query: 147 YVNDIVIAILELLKYHPRVLYIDIDVHHGDGVQDAFYLTDRVMTVSFHKYGGGFFPCSGD 206
Y+ND V+ IL L + R+LY+D+D+HHGDGV+DAF T +VMTVS HK+ GFFP +GD
Sbjct: 154 YLNDAVLGILRLRRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGD 213
Query: 207 MYEIGAEGGRYYSVNVRNRD 226
+ ++G GRYYSVNV +D
Sbjct: 214 VSDVGLGKGRYYSVNVPIQD 233
>pdb|3EWF|A Chain A, Crystal Structure Analysis Of Human Hdac8 H143a Variant
Complexed With Substrate.
pdb|3EWF|B Chain B, Crystal Structure Analysis Of Human Hdac8 H143a Variant
Complexed With Substrate.
pdb|3EWF|C Chain C, Crystal Structure Analysis Of Human Hdac8 H143a Variant
Complexed With Substrate.
pdb|3EWF|D Chain D, Crystal Structure Analysis Of Human Hdac8 H143a Variant
Complexed With Substrate
Length = 388
Score = 202 bits (513), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 96/200 (48%), Positives = 133/200 (66%), Gaps = 1/200 (0%)
Query: 27 PHRLSVINSLILGYGLHKKMQIYRPYKASYHDMCRFHSAEYIDFLHTVSPDKIHEHTKFL 86
P R S+++SLI Y LHK+M+I +P AS +M FH+ Y+ L VS + +H +
Sbjct: 35 PKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQEGDDDHPDSI 94
Query: 87 CQFASGEDCPIFHGLYDFCSMYTGASLEGAIQLNNNCCDIAINWSGGLHHAKKSEASGFC 146
++ G DCP G++D+ + GA++ A L + C +AINWSGG H AKK EASGFC
Sbjct: 95 -EYGLGYDCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHAAKKDEASGFC 153
Query: 147 YVNDIVIAILELLKYHPRVLYIDIDVHHGDGVQDAFYLTDRVMTVSFHKYGGGFFPCSGD 206
Y+ND V+ IL L + R+LY+D+D+HHGDGV+DAF T +VMTVS HK+ GFFP +GD
Sbjct: 154 YLNDAVLGILRLRRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGD 213
Query: 207 MYEIGAEGGRYYSVNVRNRD 226
+ ++G GRYYSVNV +D
Sbjct: 214 VSDVGLGKGRYYSVNVPIQD 233
>pdb|3EW8|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101l Variant
Length = 388
Score = 201 bits (511), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 96/200 (48%), Positives = 133/200 (66%), Gaps = 1/200 (0%)
Query: 27 PHRLSVINSLILGYGLHKKMQIYRPYKASYHDMCRFHSAEYIDFLHTVSPDKIHEHTKFL 86
P R S+++SLI Y LHK+M+I +P AS +M FH+ Y+ L VS + +H +
Sbjct: 35 PKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQEGDDDHPDSI 94
Query: 87 CQFASGEDCPIFHGLYDFCSMYTGASLEGAIQLNNNCCDIAINWSGGLHHAKKSEASGFC 146
++ G CP G++D+ + GA++ A L + C +AINWSGG HHAKK EASGFC
Sbjct: 95 -EYGLGYLCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFC 153
Query: 147 YVNDIVIAILELLKYHPRVLYIDIDVHHGDGVQDAFYLTDRVMTVSFHKYGGGFFPCSGD 206
Y+ND V+ IL L + R+LY+D+D+HHGDGV+DAF T +VMTVS HK+ GFFP +GD
Sbjct: 154 YLNDAVLGILRLRRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGD 213
Query: 207 MYEIGAEGGRYYSVNVRNRD 226
+ ++G GRYYSVNV +D
Sbjct: 214 VSDVGLGKGRYYSVNVPIQD 233
>pdb|3MZ4|A Chain A, Crystal Structure Of D101l Mn2+ Hdac8 Complexed With M344
pdb|3MZ4|B Chain B, Crystal Structure Of D101l Mn2+ Hdac8 Complexed With M344
pdb|3MZ6|A Chain A, Crystal Structure Of D101l Fe2+ Hdac8 Complexed With M344
pdb|3MZ7|A Chain A, Crystal Structure Of D101l Co2+ Hdac8 Complexed With M344
Length = 389
Score = 201 bits (511), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 96/200 (48%), Positives = 133/200 (66%), Gaps = 1/200 (0%)
Query: 27 PHRLSVINSLILGYGLHKKMQIYRPYKASYHDMCRFHSAEYIDFLHTVSPDKIHEHTKFL 86
P R S+++SLI Y LHK+M+I +P AS +M FH+ Y+ L VS + +H +
Sbjct: 35 PKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQEGDDDHPDSI 94
Query: 87 CQFASGEDCPIFHGLYDFCSMYTGASLEGAIQLNNNCCDIAINWSGGLHHAKKSEASGFC 146
++ G CP G++D+ + GA++ A L + C +AINWSGG HHAKK EASGFC
Sbjct: 95 -EYGLGYLCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFC 153
Query: 147 YVNDIVIAILELLKYHPRVLYIDIDVHHGDGVQDAFYLTDRVMTVSFHKYGGGFFPCSGD 206
Y+ND V+ IL L + R+LY+D+D+HHGDGV+DAF T +VMTVS HK+ GFFP +GD
Sbjct: 154 YLNDAVLGILRLRRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGD 213
Query: 207 MYEIGAEGGRYYSVNVRNRD 226
+ ++G GRYYSVNV +D
Sbjct: 214 VSDVGLGKGRYYSVNVPIQD 233
>pdb|1C3R|A Chain A, Crystal Structure Of An Hdac Homolog Complexed With
Trichostatin A
pdb|1C3R|B Chain B, Crystal Structure Of An Hdac Homolog Complexed With
Trichostatin A
pdb|1C3S|A Chain A, Crystal Structure Of An Hdac Homolog Complexed With Saha
Length = 375
Score = 113 bits (283), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 115/221 (52%), Gaps = 4/221 (1%)
Query: 4 KTVSYFYNPDVGNFHYGAKHPMKPHRLSVINSLILGYGLHKKMQIYRPYKASYHDMCRFH 63
K V D G + Y HP+K R+S++ L + ++ + A+ ++ FH
Sbjct: 2 KKVKLIGTLDYGKYRYPKNHPLKIPRVSLLLRFKDAMNLIDEKELIKSRPATKEELLLFH 61
Query: 64 SAEYIDFLHTVSPDKIHEHTKFLCQFASGEDCPIFHGLYDFCSMYTGASLEGAIQLNNNC 123
+ +YI+ L + G + P+ + ++ S+ TG++++ +
Sbjct: 62 TEDYINTLMEAERSQSVPKGAREKYNIGGYENPVSYAMFTGSSLATGSTVQAIEEFLKG- 120
Query: 124 CDIAINWSGGLHHAKKSEASGFCYVNDIVIAILELLKY-HPRVLYIDIDVHHGDGVQDAF 182
++A N +GG+HHA KS A+GFCY+N+ + I L K R+LYID+D HH DGVQ+AF
Sbjct: 121 -NVAFNPAGGMHHAFKSRANGFCYINNPAVGIEYLRKKGFKRILYIDLDAHHCDGVQEAF 179
Query: 183 YLTDRVMTVSFHKYGGGFFPCS-GDMYEIGAEGGRYYSVNV 222
Y TD+V +S H+ FP G + EIG G+ Y++N+
Sbjct: 180 YDTDQVFVLSLHQSPEYAFPFEKGFLEEIGEGKGKGYNLNI 220
>pdb|1C3P|A Chain A, Crystal Structure Of An Hdac Homolog From Aquifex Aeolicus
Length = 375
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 116/226 (51%), Gaps = 14/226 (6%)
Query: 4 KTVSYFYNPDVGNFHYGAKHPMKPHRLSVINSLILGYGLHKKMQIYRPYKASYHDMCRFH 63
K V D G + Y HP+K R+S++ L + ++ + A+ ++ FH
Sbjct: 2 KKVKLIGTLDYGKYRYPKNHPLKIPRVSLLLRFKDAMNLIDEKELIKSRPATKEELLLFH 61
Query: 64 SAEYIDFLHTVS-----PDKIHEHTKFLCQFASGEDCPIFHGLYDFCSMYTGASLEGAIQ 118
+ +YI+ L P E G + P+ + ++ S+ TG++++ +
Sbjct: 62 TEDYINTLMEAERCQCVPKGAREKYNI-----GGYENPVSYAMFTGSSLATGSTVQAIEE 116
Query: 119 LNNNCCDIAINWSGGLHHAKKSEASGFCYVNDIVIAILELLKY-HPRVLYIDIDVHHGDG 177
++A N +GG+HHA KS A+GFCY+N+ + I L K R+LYID+D HH DG
Sbjct: 117 FLKG--NVAFNPAGGMHHAFKSRANGFCYINNPAVGIEYLRKKGFKRILYIDLDAHHCDG 174
Query: 178 VQDAFYLTDRVMTVSFHKYGGGFFPCS-GDMYEIGAEGGRYYSVNV 222
VQ+AFY TD+V +S H+ FP G + EIG G+ Y++N+
Sbjct: 175 VQEAFYDTDQVFVLSLHQSPEYAFPFEKGFLEEIGEGKGKGYNLNI 220
>pdb|3C0Y|A Chain A, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7
pdb|3C0Y|B Chain B, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7
pdb|3C0Y|C Chain C, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7
pdb|3C0Z|A Chain A, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7 In Complex With Saha
pdb|3C0Z|B Chain B, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7 In Complex With Saha
pdb|3C0Z|C Chain C, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7 In Complex With Saha
pdb|3C10|A Chain A, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7 In Complex With Trichostatin A (Tsa)
pdb|3C10|B Chain B, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7 In Complex With Trichostatin A (Tsa)
pdb|3C10|C Chain C, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7 In Complex With Trichostatin A (Tsa)
Length = 423
Score = 77.4 bits (189), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 55/91 (60%), Gaps = 3/91 (3%)
Query: 135 HHAKKSEASGFCYVNDIVIAILELLKYH--PRVLYIDIDVHHGDGVQDAFYLTDRVMTVS 192
HHA S A GFC+ N + IA +L + ++L +D DVHHG+G Q FY V+ +S
Sbjct: 189 HHADHSTAMGFCFFNSVAIACRQLQQQSKASKILIVDWDVHHGNGTQQTFYQDPSVLYIS 248
Query: 193 FHKY-GGGFFPCSGDMYEIGAEGGRYYSVNV 222
H++ G FFP SG + E+GA G ++VNV
Sbjct: 249 LHRHDDGNFFPGSGAVDEVGAGSGEGFNVNV 279
>pdb|2VQQ|A Chain A, Structure Of Hdac4 Catalytic Domain (A Double Cysteine-To-
Alanine Mutant) Bound To A Trifluoromethylketone
Inhbitor
pdb|2VQQ|B Chain B, Structure Of Hdac4 Catalytic Domain (A Double Cysteine-To-
Alanine Mutant) Bound To A Trifluoromethylketone
Inhbitor
Length = 413
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 102/226 (45%), Gaps = 30/226 (13%)
Query: 21 AKHPMKPHRLSVINSLILGYGLHKKMQIYRPYKASYHDMCRFHSAEYIDFLHTVSP--DK 78
+ HP R+ I S + GL K + R KA+ ++ HS E L+ +P +
Sbjct: 29 SSHPEHAGRIQSIWSRLQETGLRGKCEAIRGRKATLEELQTVHS-EAHTLLYGTNPLNRQ 87
Query: 79 IHEHTKFLCQFASGEDCPIFHGL------YDFCSMYTGASLEGAIQLNNNCC-DIAINWS 131
+ K L AS +F L D +++ GA +L C ++ +
Sbjct: 88 KLDSKKLLGSLAS-----VFVRLPCGGVGVDSDTIWNEVHSAGAARLAVGCVVELVFKVA 142
Query: 132 GGL------------HHAKKSEASGFCYVNDIVIA--ILELLKYHPRVLYIDIDVHHGDG 177
G HHA++S GFCY N + +A +L+ ++L +D DVHHG+G
Sbjct: 143 TGELKNGFAVVRPPGHHAEESTPMGFCYFNSVAVAAKLLQQRLSVSKILIVDWDVHHGNG 202
Query: 178 VQDAFYLTDRVMTVSFHKY-GGGFFPCSGDMYEIGAEGGRYYSVNV 222
Q AFY V+ +S H+Y G FFP SG E+G G ++VN+
Sbjct: 203 TQQAFYSDPSVLYMSLHRYDDGNFFPGSGAPDEVGTGPGVGFNVNM 248
>pdb|2VQO|A Chain A, Structure Of Hdac4 Catalytic Domain With A
Gain-Of-Function Muation Bound To A
Trifluoromethylketone Inhbitor
pdb|2VQO|B Chain B, Structure Of Hdac4 Catalytic Domain With A
Gain-Of-Function Muation Bound To A
Trifluoromethylketone Inhbitor
pdb|2VQV|A Chain A, Structure Of Hdac4 Catalytic Domain With A
Gain-Of-Function Mutation Bound To A Hydroxamic Acid
Inhibitor
pdb|2VQV|B Chain B, Structure Of Hdac4 Catalytic Domain With A
Gain-Of-Function Mutation Bound To A Hydroxamic Acid
Inhibitor
Length = 413
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 102/226 (45%), Gaps = 30/226 (13%)
Query: 21 AKHPMKPHRLSVINSLILGYGLHKKMQIYRPYKASYHDMCRFHSAEYIDFLHTVSP--DK 78
+ HP R+ I S + GL K + R KA+ ++ HS E L+ +P +
Sbjct: 29 SSHPEHAGRIQSIWSRLQETGLRGKCEAIRGRKATLEELQTVHS-EAHTLLYGTNPLNRQ 87
Query: 79 IHEHTKFLCQFASGEDCPIFHGL------YDFCSMYTGASLEGAIQLNNNCC-DIAINWS 131
+ K L AS +F L D +++ GA +L C ++ +
Sbjct: 88 KLDSKKLLGSLAS-----VFVRLPCGGVGVDSDTIWNEVHSAGAARLAVGCVVELVFKVA 142
Query: 132 GGL------------HHAKKSEASGFCYVNDIVIA--ILELLKYHPRVLYIDIDVHHGDG 177
G HHA++S GFCY N + +A +L+ ++L +D DVHHG+G
Sbjct: 143 TGELKNGFAVVRPPGHHAEESTPMGFCYFNSVAVAAKLLQQRLSVSKILIVDWDVHHGNG 202
Query: 178 VQDAFYLTDRVMTVSFHKY-GGGFFPCSGDMYEIGAEGGRYYSVNV 222
Q AFY V+ +S H+Y G FFP SG E+G G ++VN+
Sbjct: 203 TQQAFYSDPSVLYMSLHRYDDGNFFPGSGAPDEVGTGPGVGFNVNM 248
>pdb|2VQJ|A Chain A, Structure Of Hdac4 Catalytic Domain Bound To A
Trifluoromethylketone Inhbitor
pdb|2VQM|A Chain A, Structure Of Hdac4 Catalytic Domain Bound To A Hydroxamic
Acid Inhbitor
Length = 413
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 102/226 (45%), Gaps = 30/226 (13%)
Query: 21 AKHPMKPHRLSVINSLILGYGLHKKMQIYRPYKASYHDMCRFHSAEYIDFLHTVSP--DK 78
+ HP R+ I S + GL K + R KA+ ++ HS E L+ +P +
Sbjct: 29 SSHPEHAGRIQSIWSRLQETGLRGKCECIRGRKATLEELQTVHS-EAHTLLYGTNPLNRQ 87
Query: 79 IHEHTKFLCQFASGEDCPIFHGL------YDFCSMYTGASLEGAIQLNNNCC-DIAINWS 131
+ K L AS +F L D +++ GA +L C ++ +
Sbjct: 88 KLDSKKLLGSLAS-----VFVRLPCGGVGVDSDTIWNEVHSAGAARLAVGCVVELVFKVA 142
Query: 132 GGL------------HHAKKSEASGFCYVNDIVIA--ILELLKYHPRVLYIDIDVHHGDG 177
G HHA++S GFCY N + +A +L+ ++L +D DVHHG+G
Sbjct: 143 TGELKNGFAVVRPPGHHAEESTPMGFCYFNSVAVAAKLLQQRLSVSKILIVDWDVHHGNG 202
Query: 178 VQDAFYLTDRVMTVSFHKY-GGGFFPCSGDMYEIGAEGGRYYSVNV 222
Q AFY V+ +S H+Y G FFP SG E+G G ++VN+
Sbjct: 203 TQQAFYSDPSVLYMSLHRYDDGNFFPGSGAPDEVGTGPGVGFNVNM 248
>pdb|2VQW|G Chain G, Structure Of Inhibitor-Free Hdac4 Catalytic Domain (With
Gain-Of-Function Mutation His332tyr)
Length = 413
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 102/226 (45%), Gaps = 30/226 (13%)
Query: 21 AKHPMKPHRLSVINSLILGYGLHKKMQIYRPYKASYHDMCRFHSAEYIDFLHTVSP--DK 78
+ HP R+ I S + GL K + R KA+ ++ HS E L+ +P +
Sbjct: 29 SSHPEHAGRIQSIWSRLQETGLRGKCECIRGRKATLEELQTVHS-EAHTLLYGTNPLNRQ 87
Query: 79 IHEHTKFLCQFASGEDCPIFHGL------YDFCSMYTGASLEGAIQLNNNCC-DIAINWS 131
+ K L AS +F L D +++ GA +L C ++ +
Sbjct: 88 KLDSKKLLGSLAS-----VFVRLPCGGVGVDSDTIWNEVHSAGAARLAVGCVVELVFKVA 142
Query: 132 GGL------------HHAKKSEASGFCYVNDIVIA--ILELLKYHPRVLYIDIDVHHGDG 177
G HHA++S GFCY N + +A +L+ ++L +D DVHHG+G
Sbjct: 143 TGELKNGFAVVRPPGHHAEESTPMGFCYFNSVAVAAKLLQQRLSVSKILIVDWDVHHGNG 202
Query: 178 VQDAFYLTDRVMTVSFHKY-GGGFFPCSGDMYEIGAEGGRYYSVNV 222
Q AFY V+ +S H+Y G FFP SG E+G G ++VN+
Sbjct: 203 TQQAFYSDPSVLYMSLHRYDDGNFFPGSGAPDEVGTGPGVGFNVNM 248
>pdb|3MEN|A Chain A, Crystal Structure Of Acetylpolyamine Aminohydrolase From
Burkholderia Pseudomallei, Iodide Soak
pdb|3MEN|B Chain B, Crystal Structure Of Acetylpolyamine Aminohydrolase From
Burkholderia Pseudomallei, Iodide Soak
pdb|3MEN|C Chain C, Crystal Structure Of Acetylpolyamine Aminohydrolase From
Burkholderia Pseudomallei, Iodide Soak
pdb|3MEN|D Chain D, Crystal Structure Of Acetylpolyamine Aminohydrolase From
Burkholderia Pseudomallei, Iodide Soak
Length = 362
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 59/112 (52%), Gaps = 5/112 (4%)
Query: 135 HHAKKSEASGFCYVNDIVIAILELLKYHPRVLYIDIDVHHGDGVQDAFYLTDRVMTVSFH 194
HHA+ A GFCY+N+ IA L H RV +D D+HHG G+Q+ FY V+ VS H
Sbjct: 177 HHARVDAAGGFCYLNNAAIAAQALRARHARVAVLDTDMHHGQGIQEIFYARRDVLYVSIH 236
Query: 195 KYGGGFFPC-SGDMYEIGAEGGRYYSVNVRNRDLSPHSSHKRMFRERVHSLL 245
F+P +G E GA G Y+VN+ PH S + F ERV L
Sbjct: 237 GDPTNFYPAVAGFDDERGAGEGLGYNVNL----PMPHGSSEAAFFERVDDAL 284
>pdb|1ZZ0|A Chain A, Crystal Structure Of A Hdac-Like Protein With Acetate
Bound
pdb|1ZZ0|B Chain B, Crystal Structure Of A Hdac-Like Protein With Acetate
Bound
pdb|1ZZ0|C Chain C, Crystal Structure Of A Hdac-Like Protein With Acetate
Bound
pdb|1ZZ0|D Chain D, Crystal Structure Of A Hdac-Like Protein With Acetate
Bound
pdb|1ZZ1|A Chain A, Crystal Structure Of A Hdac-Like Protein With Saha Bound
pdb|1ZZ1|B Chain B, Crystal Structure Of A Hdac-Like Protein With Saha Bound
pdb|1ZZ1|C Chain C, Crystal Structure Of A Hdac-Like Protein With Saha Bound
pdb|1ZZ1|D Chain D, Crystal Structure Of A Hdac-Like Protein With Saha Bound
pdb|1ZZ3|A Chain A, Crystal Structure Of A Hdac-Like Protein With Cypx Bound
pdb|1ZZ3|B Chain B, Crystal Structure Of A Hdac-Like Protein With Cypx Bound
pdb|1ZZ3|C Chain C, Crystal Structure Of A Hdac-Like Protein With Cypx Bound
pdb|1ZZ3|D Chain D, Crystal Structure Of A Hdac-Like Protein With Cypx Bound
pdb|2GH6|A Chain A, Crystal Structure Of A Hdac-Like Protein With
9,9,9-Trifluoro-8-Oxo-N- Phenylnonan Amide Bound
pdb|2GH6|B Chain B, Crystal Structure Of A Hdac-Like Protein With
9,9,9-Trifluoro-8-Oxo-N- Phenylnonan Amide Bound
pdb|2GH6|C Chain C, Crystal Structure Of A Hdac-Like Protein With
9,9,9-Trifluoro-8-Oxo-N- Phenylnonan Amide Bound
pdb|2GH6|D Chain D, Crystal Structure Of A Hdac-Like Protein With
9,9,9-Trifluoro-8-Oxo-N- Phenylnonan Amide Bound
Length = 369
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 91/226 (40%), Gaps = 36/226 (15%)
Query: 35 SLILGYGLHKKMQIYRPYKASYHDMCRFHSAEYIDFLHTVSPDKIHEHTKFLCQFASGED 94
L+ G + + A+ D+ R HSA ++ E+ K + +G D
Sbjct: 48 ELVCASGQIEHLTPIAAVAATDADILRAHSAAHL------------ENMKRVSNLPTGGD 95
Query: 95 CPIFHGLYDFCSMYTGASLE-------GAIQLNNNCCDIAINWSGGL-----HHAKKSEA 142
D +M LE GA++L ++ L HHA + A
Sbjct: 96 T------GDGITMMGNGGLEIARLSAGGAVELTRRVATGELSAGYALVNPPGHHAPHNAA 149
Query: 143 SGFCYVNDIVIAI--LELLKYHPRVLYIDIDVHHGDGVQDAFYLTDRVMTVSFHKYGGGF 200
GFC N+ +A + RV +D DVHHG+G QD ++ V+T+S H++ F
Sbjct: 150 MGFCIFNNTSVAAGYARAVLGMERVAILDWDVHHGNGTQDIWWNDPSVLTISLHQH-LCF 208
Query: 201 FPCSGDMYEIGAEGGRYYSVNVRNRDLSPHSSHKRMFRERVHSLLP 246
P SG E GA G Y++NV L P S + +LP
Sbjct: 209 PPDSGYSTERGAGNGHGYNINV---PLPPGSGNAAYLHAMDQVVLP 251
>pdb|2VCG|A Chain A, Crystal Structure Of A Hdac-like Protein Hdah From
Bordetella Sp. With The Bound Inhibitor St-17
pdb|2VCG|B Chain B, Crystal Structure Of A Hdac-like Protein Hdah From
Bordetella Sp. With The Bound Inhibitor St-17
pdb|2VCG|C Chain C, Crystal Structure Of A Hdac-like Protein Hdah From
Bordetella Sp. With The Bound Inhibitor St-17
pdb|2VCG|D Chain D, Crystal Structure Of A Hdac-like Protein Hdah From
Bordetella Sp. With The Bound Inhibitor St-17
Length = 375
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 91/226 (40%), Gaps = 36/226 (15%)
Query: 35 SLILGYGLHKKMQIYRPYKASYHDMCRFHSAEYIDFLHTVSPDKIHEHTKFLCQFASGED 94
L+ G + + A+ D+ R HSA ++ E+ K + +G D
Sbjct: 54 ELVCASGQIEHLTPIAAVAATDADILRAHSAAHL------------ENMKRVSNLPTGGD 101
Query: 95 CPIFHGLYDFCSMYTGASLE-------GAIQLNNNCCDIAINWSGGL-----HHAKKSEA 142
D +M LE GA++L ++ L HHA + A
Sbjct: 102 T------GDGITMMGNGGLEIARLSAGGAVELTRRVATGELSAGYALVNPPGHHAPHNAA 155
Query: 143 SGFCYVNDIVIAI--LELLKYHPRVLYIDIDVHHGDGVQDAFYLTDRVMTVSFHKYGGGF 200
GFC N+ +A + RV +D DVHHG+G QD ++ V+T+S H++ F
Sbjct: 156 MGFCIFNNTSVAAGYARAVLGMERVAILDWDVHHGNGTQDIWWNDPSVLTISLHQH-LCF 214
Query: 201 FPCSGDMYEIGAEGGRYYSVNVRNRDLSPHSSHKRMFRERVHSLLP 246
P SG E GA G Y++NV L P S + +LP
Sbjct: 215 PPDSGYSTERGAGNGHGYNINV---PLPPGSGNAAYLHAMDQVVLP 257
>pdb|3Q9B|A Chain A, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|B Chain B, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|C Chain C, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|D Chain D, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|E Chain E, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|F Chain F, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|G Chain G, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|H Chain H, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|I Chain I, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|J Chain J, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|K Chain K, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|L Chain L, Crystal Structure Of Apah Complexed With M344
pdb|3Q9F|A Chain A, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|B Chain B, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|C Chain C, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|D Chain D, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|E Chain E, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|F Chain F, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|G Chain G, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|H Chain H, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|I Chain I, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|J Chain J, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|K Chain K, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|L Chain L, Crystal Structure Of Apah Complexed With Caps
Length = 341
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 135 HHAKKSEASGFCYVNDIVIAILELL-KYHPRVLYIDIDVHHGDGVQDAFYLTDRVMTVSF 193
HHA G+C++N+ +A LL K ++ +D+D HHG+G QD FY V S
Sbjct: 158 HHAGIDMFGGYCFINNAAVAAQRLLDKGAKKIAILDVDFHHGNGTQDIFYERGDVFFASL 217
Query: 194 HKYGGGFFP 202
H FP
Sbjct: 218 HGDPAEAFP 226
>pdb|3Q9C|A Chain A, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|B Chain B, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|C Chain C, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|D Chain D, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|E Chain E, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|F Chain F, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|G Chain G, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|H Chain H, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|I Chain I, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|J Chain J, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|K Chain K, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|L Chain L, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9E|A Chain A, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|B Chain B, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|C Chain C, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|D Chain D, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|E Chain E, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|F Chain F, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|G Chain G, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|H Chain H, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|I Chain I, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|J Chain J, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|K Chain K, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|L Chain L, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
Length = 341
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 144 GFCYVNDIVIAILELL-KYHPRVLYIDIDVHHGDGVQDAFYLTDRVMTVSFHKYGGGFFP 202
G+C++N+ +A LL K ++ +D+D HHG+G QD FY V S H FP
Sbjct: 167 GYCFINNAAVAAQRLLDKGAKKIAILDVDFHHGNGTQDIFYERGDVFFASLHGDPAEAFP 226
>pdb|4GAE|A Chain A, Crystal Structure Of Plasmodium Dxr In Complex With A
Pyridine- Containing Inhibitor
pdb|4GAE|B Chain B, Crystal Structure Of Plasmodium Dxr In Complex With A
Pyridine- Containing Inhibitor
Length = 426
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 187 RVMTVSFHKYGGGFFPCSGDMYEIGAEGGRYYSV 220
+V T++FHK FPC Y+ G +G Y +V
Sbjct: 323 QVSTLTFHKPSLEHFPCIKLAYQAGIKGNFYPTV 356
>pdb|3AU8|A Chain A, Crystal Structure Of The Ternary Complex Of An Isomerase
pdb|3AU8|B Chain B, Crystal Structure Of The Ternary Complex Of An Isomerase
pdb|3AU9|A Chain A, Crystal Structure Of The Quaternary Complex-1 Of An
Isomerase
pdb|3AU9|B Chain B, Crystal Structure Of The Quaternary Complex-1 Of An
Isomerase
pdb|3AUA|A Chain A, Crystal Structure Of The Quaternary Complex-2 Of An
Isomerase
pdb|3AUA|B Chain B, Crystal Structure Of The Quaternary Complex-2 Of An
Isomerase
Length = 488
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 187 RVMTVSFHKYGGGFFPCSGDMYEIGAEGGRYYSV 220
+V T++FHK FPC Y+ G +G Y +V
Sbjct: 385 QVSTLTFHKPSLEHFPCIKLAYQAGIKGNFYPTV 418
>pdb|1REO|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys Pallas
pdb|1TDK|A Chain A, L-amino Acid Oxidase From Agkistrodon Halys In Complex
With Suicide Substrate L-vinylglycine
pdb|1TDN|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys In Complex
With L-Leucine
pdb|1TDO|A Chain A, L-Amino Acid Oxidae From Agkistrodon Halys In Complex With
L- Phenylalanine
Length = 486
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 7/59 (11%)
Query: 89 FASGEDCPIFHGLYDFCSMYTGASLEGAIQLNNNCCDIAINWSGGLHHAKKSEASGFCY 147
F SG I +G+ D + + + +C DI IN +H + E FCY
Sbjct: 362 FTSGVGVIIAYGIGDDANFFQALDFK-------DCADIVINDLSLIHQLPREEIQTFCY 413
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.140 0.449
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,044,753
Number of Sequences: 62578
Number of extensions: 381705
Number of successful extensions: 916
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 854
Number of HSP's gapped (non-prelim): 33
length of query: 285
length of database: 14,973,337
effective HSP length: 98
effective length of query: 187
effective length of database: 8,840,693
effective search space: 1653209591
effective search space used: 1653209591
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)