Query psy10342
Match_columns 285
No_of_seqs 134 out of 1120
Neff 7.4
Searched_HMMs 46136
Date Fri Aug 16 15:31:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10342.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10342hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00063 histone deacetylase; 100.0 1.4E-82 3E-87 602.0 30.0 281 1-283 1-293 (436)
2 PTZ00346 histone deacetylase; 100.0 1.5E-80 3.2E-85 585.0 29.6 279 3-283 19-311 (429)
3 KOG1342|consensus 100.0 6.1E-81 1.3E-85 567.1 23.7 283 1-284 4-296 (425)
4 COG0123 AcuC Deacetylases, inc 100.0 2.8E-76 6.2E-81 547.7 28.1 267 4-281 2-280 (340)
5 PF00850 Hist_deacetyl: Histon 100.0 5.9E-74 1.3E-78 529.9 20.8 261 11-280 1-280 (311)
6 KOG1343|consensus 100.0 1.5E-43 3.2E-48 354.7 15.8 247 21-280 463-728 (797)
7 KOG1344|consensus 100.0 3.8E-43 8.3E-48 302.0 9.7 268 2-285 12-293 (324)
8 KOG1343|consensus 100.0 9E-34 1.9E-38 284.5 6.6 267 3-274 28-320 (797)
9 KOG0121|consensus 80.1 1.5 3.2E-05 35.6 2.4 42 138-179 73-121 (153)
10 cd04502 SGNH_hydrolase_like_7 69.3 10 0.00022 31.1 5.0 60 219-279 25-87 (171)
11 cd01828 sialate_O-acetylestera 62.8 17 0.00037 29.6 5.1 54 220-277 25-83 (169)
12 KOG4184|consensus 60.9 12 0.00027 35.4 4.2 26 229-255 222-247 (478)
13 TIGR01969 minD_arch cell divis 59.7 10 0.00023 33.0 3.5 17 160-176 27-43 (251)
14 cd01833 XynB_like SGNH_hydrola 59.4 18 0.0004 29.0 4.7 49 230-278 25-76 (157)
15 cd01841 NnaC_like NnaC (CMP-Ne 59.3 23 0.00049 29.0 5.3 57 219-278 26-87 (174)
16 cd03111 CpaE_like This protein 59.0 19 0.00042 27.5 4.5 23 154-176 21-43 (106)
17 cd01836 FeeA_FeeB_like SGNH_hy 57.4 21 0.00046 29.7 4.9 54 220-277 44-102 (191)
18 PF02310 B12-binding: B12 bind 57.3 32 0.0007 26.3 5.6 44 151-194 17-60 (121)
19 PRK13236 nitrogenase reductase 55.7 13 0.00028 34.1 3.5 22 161-183 33-54 (296)
20 cd04501 SGNH_hydrolase_like_4 54.4 41 0.00089 27.7 6.1 36 219-255 34-69 (183)
21 cd01844 SGNH_hydrolase_like_6 54.2 23 0.00049 29.3 4.5 43 237-280 49-92 (177)
22 TIGR03018 pepcterm_TyrKin exop 52.9 15 0.00032 31.6 3.3 24 153-176 56-79 (207)
23 cd01822 Lysophospholipase_L1_l 52.3 46 0.001 27.0 6.1 45 231-277 50-99 (177)
24 COG1105 FruK Fructose-1-phosph 52.1 38 0.00083 31.6 5.9 61 217-282 101-162 (310)
25 cd05781 DNA_polB_B3_exo DEDDy 50.9 1.5E+02 0.0033 25.2 9.1 66 164-251 4-69 (188)
26 cd01820 PAF_acetylesterase_lik 50.2 23 0.00049 30.4 4.0 18 241-258 85-103 (214)
27 cd02036 MinD Bacterial cell di 47.9 17 0.00038 29.7 2.8 21 159-179 25-45 (179)
28 PRK13233 nifH nitrogenase redu 47.3 19 0.0004 32.3 3.1 16 161-176 30-45 (275)
29 cd03110 Fer4_NifH_child This p 47.2 15 0.00032 30.5 2.3 15 163-177 25-39 (179)
30 CHL00175 minD septum-site dete 47.1 22 0.00047 32.0 3.5 20 160-179 42-61 (281)
31 PRK13234 nifH nitrogenase redu 46.7 18 0.0004 33.1 3.0 22 160-182 30-51 (295)
32 PRK10528 multifunctional acyl- 45.4 66 0.0014 27.1 6.1 56 219-277 46-106 (191)
33 cd01825 SGNH_hydrolase_peri1 S 44.0 63 0.0014 26.5 5.7 38 239-277 50-92 (189)
34 PRK10818 cell division inhibit 43.8 26 0.00055 31.2 3.4 18 160-177 29-46 (270)
35 cd01835 SGNH_hydrolase_like_3 41.8 83 0.0018 26.1 6.1 55 220-276 41-105 (193)
36 PF09140 MipZ: ATPase MipZ; I 41.2 22 0.00047 32.2 2.5 17 158-174 25-41 (261)
37 cd01838 Isoamyl_acetate_hydrol 41.0 76 0.0017 26.0 5.8 26 230-255 45-73 (199)
38 TIGR01968 minD_bact septum sit 40.4 32 0.0007 30.0 3.5 18 159-176 27-44 (261)
39 PRK11709 putative L-ascorbate 38.1 35 0.00075 32.4 3.5 55 227-284 224-279 (355)
40 TIGR01281 DPOR_bchL light-inde 37.8 28 0.00061 31.0 2.7 19 160-179 26-44 (268)
41 PHA02518 ParA-like protein; Pr 37.6 31 0.00066 29.1 2.8 21 158-179 25-45 (211)
42 PF02701 zf-Dof: Dof domain, z 37.6 10 0.00022 26.6 -0.1 10 143-152 16-25 (63)
43 COG3640 CooC CO dehydrogenase 37.3 39 0.00085 30.4 3.4 41 142-182 111-156 (255)
44 PRK13232 nifH nitrogenase redu 37.1 34 0.00074 30.6 3.2 16 161-176 28-43 (273)
45 cd02117 NifH_like This family 36.2 32 0.0007 29.5 2.8 21 160-181 26-46 (212)
46 PRK13185 chlL protochlorophyll 35.5 32 0.00069 30.7 2.7 19 160-179 28-46 (270)
47 TIGR01287 nifH nitrogenase iro 35.0 34 0.00073 30.6 2.8 19 160-179 26-44 (275)
48 cd02040 NifH NifH gene encodes 34.8 45 0.00097 29.5 3.5 19 160-179 27-45 (270)
49 cd01832 SGNH_hydrolase_like_1 34.6 1.5E+02 0.0032 24.2 6.5 32 237-270 60-92 (185)
50 COG0299 PurN Folate-dependent 33.7 83 0.0018 27.4 4.8 27 228-255 62-88 (200)
51 cd05785 DNA_polB_like2_exo Unc 33.6 3.1E+02 0.0068 23.6 9.2 25 227-251 55-79 (207)
52 TIGR02016 BchX chlorophyllide 32.7 49 0.0011 30.4 3.5 16 160-175 26-41 (296)
53 cd01839 SGNH_arylesterase_like 32.5 1.1E+02 0.0024 25.8 5.4 44 235-278 68-117 (208)
54 PRK13230 nitrogenase reductase 32.0 47 0.001 29.8 3.2 21 160-181 27-47 (279)
55 cd02032 Bchl_like This family 29.9 46 0.00099 29.6 2.8 18 160-178 26-43 (267)
56 PF13472 Lipase_GDSL_2: GDSL-l 29.8 95 0.002 24.4 4.4 58 219-277 33-96 (179)
57 cd07388 MPP_Tt1561 Thermus the 28.4 1.8E+02 0.0039 25.6 6.2 48 232-282 18-65 (224)
58 TIGR03371 cellulose_yhjQ cellu 28.1 64 0.0014 28.0 3.3 14 160-173 28-41 (246)
59 PHA02528 43 DNA polymerase; Pr 27.8 1.8E+02 0.0038 31.3 7.0 88 163-250 106-198 (881)
60 PF01656 CbiA: CobQ/CobB/MinD/ 27.6 67 0.0014 26.5 3.2 18 157-174 22-39 (195)
61 COG1192 Soj ATPases involved i 27.6 64 0.0014 28.4 3.2 30 153-183 23-52 (259)
62 PRK10037 cell division protein 26.6 51 0.0011 29.1 2.4 17 160-177 28-44 (250)
63 PRK11519 tyrosine kinase; Prov 25.8 1.4E+02 0.0029 31.1 5.7 21 161-182 554-574 (719)
64 PF05533 Peptidase_C42: Beet y 25.7 47 0.001 25.0 1.7 21 140-160 2-22 (88)
65 cd02037 MRP-like MRP (Multiple 25.6 59 0.0013 26.7 2.5 15 160-174 26-40 (169)
66 cd01830 XynE_like SGNH_hydrola 25.4 2.5E+02 0.0054 23.6 6.5 24 232-255 60-84 (204)
67 cd01829 SGNH_hydrolase_peri2 S 25.0 1.9E+02 0.0042 23.8 5.7 24 232-255 46-69 (200)
68 cd01821 Rhamnogalacturan_acety 25.0 2.1E+02 0.0046 23.8 5.9 33 237-270 56-94 (198)
69 COG3914 Spy Predicted O-linked 24.8 6.8E+02 0.015 25.6 9.9 124 141-278 312-457 (620)
70 PRK07067 sorbitol dehydrogenas 24.3 3.6E+02 0.0078 23.2 7.5 27 229-255 63-90 (257)
71 PF13050 DUF3911: Protein of u 24.0 29 0.00062 24.6 0.2 10 143-152 26-35 (77)
72 PF03808 Glyco_tran_WecB: Glyc 23.6 92 0.002 26.0 3.3 27 230-256 86-112 (172)
73 cd02033 BchX Chlorophyllide re 23.6 84 0.0018 29.5 3.3 23 160-183 57-79 (329)
74 cd05779 DNA_polB_epsilon_exo D 23.2 4.5E+02 0.0097 22.7 7.7 28 228-255 71-98 (204)
75 TIGR01007 eps_fam capsular exo 23.2 89 0.0019 26.4 3.2 15 161-175 45-59 (204)
76 PHA02524 43A DNA polymerase su 23.2 2.1E+02 0.0045 28.6 6.1 86 164-251 107-201 (498)
77 cd00229 SGNH_hydrolase SGNH_hy 23.0 1.8E+02 0.0039 22.5 4.9 40 238-277 58-102 (187)
78 cd01834 SGNH_hydrolase_like_2 23.0 1.3E+02 0.0028 24.4 4.2 39 237-276 53-99 (191)
79 KOG3838|consensus 22.4 52 0.0011 31.7 1.7 23 173-195 167-207 (497)
80 TIGR03815 CpaE_hom_Actino heli 22.0 1E+02 0.0022 28.4 3.5 16 160-175 120-135 (322)
81 cd00525 AE_Prim_S_like AE_Prim 22.0 65 0.0014 25.3 2.0 15 163-177 54-68 (136)
82 PRK07533 enoyl-(acyl carrier p 22.0 5.3E+02 0.011 22.4 8.7 44 228-271 70-119 (258)
83 CHL00072 chlL photochlorophyll 21.8 70 0.0015 29.2 2.4 18 160-178 26-43 (290)
84 PRK11702 hypothetical protein; 21.8 4E+02 0.0086 20.9 6.2 63 215-278 20-92 (108)
85 PF01012 ETF: Electron transfe 21.7 1.3E+02 0.0029 24.5 3.9 30 226-255 71-100 (164)
86 TIGR00034 aroFGH phospho-2-deh 21.6 5.1E+02 0.011 24.6 8.1 29 149-180 239-269 (344)
87 PF11202 PRTase_1: Phosphoribo 21.5 1.2E+02 0.0025 27.5 3.6 40 218-258 40-101 (257)
88 cd02042 ParA ParA and ParB of 21.1 1.2E+02 0.0026 22.4 3.2 17 157-173 23-39 (104)
89 PRK13849 putative crown gall t 20.7 80 0.0017 27.8 2.5 17 159-176 27-43 (231)
90 COG1341 Predicted GTPase or GT 20.6 7.8E+02 0.017 23.8 9.3 26 154-183 93-118 (398)
91 COG0420 SbcD DNA repair exonuc 20.5 2.7E+02 0.0058 26.3 6.2 48 230-279 22-72 (390)
92 TIGR03453 partition_RepA plasm 20.4 1.1E+02 0.0023 29.1 3.5 19 160-179 131-149 (387)
93 PF01830 Peptidase_C7: Peptida 20.2 31 0.00067 29.9 -0.2 19 139-157 155-173 (243)
94 PRK13235 nifH nitrogenase redu 20.1 1.2E+02 0.0025 27.1 3.5 16 161-176 28-43 (274)
No 1
>PTZ00063 histone deacetylase; Provisional
Probab=100.00 E-value=1.4e-82 Score=602.01 Aligned_cols=281 Identities=51% Similarity=0.927 Sum_probs=261.4
Q ss_pred CCCCcEEEEEcccccCCCCCCCCCCChhHHHHHHHHHHhCCCCCCceEeCCCCCCHHHHhccCCHHHHHHHHhcCCCchh
Q psy10342 1 MSNKTVSYFYNPDVGNFHYGAKHPMKPHRLSVINSLILGYGLHKKMQIYRPYKASYHDMCRFHSAEYIDFLHTVSPDKIH 80 (285)
Q Consensus 1 m~~~~v~~iy~~~~~~~~~~~~Hpe~p~R~~~i~~~L~~~gl~~~~~~~~~~~as~e~L~~vHs~~Yv~~l~~~~~~~~~ 80 (285)
|.+++|+|+|||+++.|.++++|||+|.|+++++++|+++|+.+.+++++|++|+.++|++|||++||++|++.++.+..
T Consensus 1 ~~~~~v~~~yd~~~~~h~~g~~HP~~P~Rl~~~~~ll~~~gl~~~~~~~~p~~At~eeL~~vHs~~YI~~L~~~~~~~~~ 80 (436)
T PTZ00063 1 SMRKRVSYFYDPDIGSYYYGPGHPMKPQRIRMAHALILSYDLYKHMEIYRPHKSVEPELVLFHDEEYVDFLSSISPENYR 80 (436)
T ss_pred CCCceEEEEECccccCcCCcCcCCcChHHHHHHHHHHHhCCCcccCeEecCCCCCHHHHHHhCCHHHHHHHHHhChhhcc
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999987765432
Q ss_pred hhhhhhcccccC--CCCCCChhHHHHHHHHhhHHHHHHHHHhcCccCeEEeCCCCCCCCCCCCCCCccccchHHHHHHHH
Q psy10342 81 EHTKFLCQFASG--EDCPIFHGLYDFCSMYTGASLEGAIQLNNNCCDIAINWSGGLHHAKKSEASGFCYVNDIVIAILEL 158 (285)
Q Consensus 81 ~~~~~~~~~~~~--~d~~~~~~~~~~a~~a~g~~l~aa~~~~~g~~~~a~~~~gG~HHA~~~~~~GFC~~NnvaiAa~~l 158 (285)
++...+..|+++ .|||+++++|++|++++||+|.||+++++|++++|+||+||+|||++++|+|||+||||||||++|
T Consensus 81 ~~~~~~~~f~lg~~~D~pv~~gl~~~a~~aaGgsl~Aa~~l~~g~~~iAin~~GG~HHA~~~~A~GFC~~NdiaiAi~~L 160 (436)
T PTZ00063 81 DFTYQLKRFNVGEATDCPVFDGLFEFQQSCAGASIDGAYKLNNHQADICVNWSGGLHHAKRSEASGFCYINDIVLGILEL 160 (436)
T ss_pred cchhhhhhcccCCCCCCCcccHHHHHHHHHHhHHHHHHHHHHcCCCCEEeeCCCCCCCCccCCCCceeeecHHHHHHHHH
Confidence 222234456776 599999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCcEEEEeccccCCcchhhhhccCCCEEEEEeeecCCCCCCCCCCCccccCCCCcccEEEeeCCCCCChHHHHHHHH
Q psy10342 159 LKYHPRVLYIDIDVHHGDGVQDAFYLTDRVMTVSFHKYGGGFFPCSGDMYEIGAEGGRYYSVNVRNRDLSPHSSHKRMFR 238 (285)
Q Consensus 159 ~~~~~rv~IvD~DvHhGnGtq~~f~~d~~V~~~SiH~~~~~fyP~~G~~~e~G~g~g~g~~~Nvpl~~g~~d~~y~~~~~ 238 (285)
++.++||+|||||||||||||+||++||+|+|+|+|++++ |||+||..+++|.|.|+||++|||||+|++|++|+.+|+
T Consensus 161 ~~~~~RVliID~DvHHGdGtqe~F~~~~~VltvS~H~~~~-ffPgtG~~~e~G~g~G~g~~vNvPL~~G~~D~~Y~~~f~ 239 (436)
T PTZ00063 161 LKYHARVMYIDIDVHHGDGVEEAFYVTHRVMTVSFHKFGD-FFPGTGDVTDIGVAQGKYYSVNVPLNDGIDDDSFVDLFK 239 (436)
T ss_pred HHhCCeEEEEeCCCCCCcchHHHhccCCCeEEEEeccCCC-cCCCCCCccccCCCCCCceEEEeeCCCCCCHHHHHHHHH
Confidence 9989999999999999999999999999999999999974 999999999999999999999999999999999999998
Q ss_pred HH----HhccCCcEEEEcCCc------cccCccccCHHHHHHHHHHHHhhccCCC
Q psy10342 239 ER----VHSLLPFVFVVFFSS------GLGKLFRFSSKTIFFCANFLAKRKSSSV 283 (285)
Q Consensus 239 ~~----l~~~~Pdlivv~aG~------plg~~~~ls~~g~~~~~~~l~~~~~~~~ 283 (285)
++ ++.|+||+||+|||+ ||| +|+||.+||.++++++++++.|++
T Consensus 240 ~ii~~~i~~f~Pd~IvvqaG~D~~~~DpLg-~l~Lt~~g~~~~~~~~~~~~~pil 293 (436)
T PTZ00063 240 PVISKCVEVYRPGAIVLQCGADSLTGDRLG-RFNLTIKGHAACVEFVRSLNIPLL 293 (436)
T ss_pred HHHHHHHHHhCCCEEEEECCccccCCCCCC-CcccCHHHHHHHHHHHHhcCCCEE
Confidence 65 456799999999999 999 999999999999999999887754
No 2
>PTZ00346 histone deacetylase; Provisional
Probab=100.00 E-value=1.5e-80 Score=585.02 Aligned_cols=279 Identities=34% Similarity=0.552 Sum_probs=254.5
Q ss_pred CCcEEEE----EcccccCCCCCCCCCCChhHHHHHHHHHHhCCCCCCceEeCCCCCCHHHHhccCCHHHHHHHHhcCCCc
Q psy10342 3 NKTVSYF----YNPDVGNFHYGAKHPMKPHRLSVINSLILGYGLHKKMQIYRPYKASYHDMCRFHSAEYIDFLHTVSPDK 78 (285)
Q Consensus 3 ~~~v~~i----y~~~~~~~~~~~~Hpe~p~R~~~i~~~L~~~gl~~~~~~~~~~~as~e~L~~vHs~~Yv~~l~~~~~~~ 78 (285)
++++++| |-+++..+.++++|||+|.|+++++++|++.|+.+.++++.|++|+.++|++|||++||++|+..+..+
T Consensus 19 ~~~~~~~~~~~y~~~~~~~~~~~~HPe~P~Rl~~~~~ll~~~gl~~~~~~~~p~~At~eeL~~vHs~~YI~~l~~~~~~~ 98 (429)
T PTZ00346 19 RGRVALIDTSGYASDMNISAFVPQHAMKPYRVLAAMEIVRSLKIDAHCRTVVPPLVKVEELMAYHTDTYLANLGLHSCRS 98 (429)
T ss_pred cceeEEEecCccccccccccCCCcCCCCHHHHHHHHHHHHhcCCcccCeeecCCCCCHHHHHHhCCHHHHHHHHHhcccc
Confidence 4688999 666777788999999999999999999999999988999999999999999999999999998743221
Q ss_pred hhhhhhhhcccccCCCCCCChhHHHHHHHHhhHHHHHHHHHhcCccCeEEeCCCCCCCCCCCCCCCccccchHHHHHHHH
Q psy10342 79 IHEHTKFLCQFASGEDCPIFHGLYDFCSMYTGASLEGAIQLNNNCCDIAINWSGGLHHAKKSEASGFCYVNDIVIAILEL 158 (285)
Q Consensus 79 ~~~~~~~~~~~~~~~d~~~~~~~~~~a~~a~g~~l~aa~~~~~g~~~~a~~~~gG~HHA~~~~~~GFC~~NnvaiAa~~l 158 (285)
... .++...+.+++|||+++++|++|++++||++.||+.+++|+.++|++||||+|||++++++|||+|||+||||++|
T Consensus 99 ~~~-~~~~~~~~~d~Dtpv~~~~~~~a~laaGgsl~Aa~~v~~g~~~~Ai~~pGG~HHA~~~~a~GFC~fNdvAIAa~~l 177 (429)
T PTZ00346 99 WLW-NAETSKVFFSGDCPPVEGLMEHSIATASGTLMGAVLLNSGQVDVAVHWGGGMHHSKCGECSGFCYVNDIVLGILEL 177 (429)
T ss_pred ccc-ccccccccccCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEeCCCCcCcCCCCCCCcchHHhHHHHHHHHH
Confidence 000 0112345577899999999999999999999999999999989999999999999999999999999999999999
Q ss_pred HhcCCcEEEEeccccCCcchhhhhccCCCEEEEEeeecCCCCCCCCCCCccccCCCCcccEEEeeCCCCCChHHHHHHHH
Q psy10342 159 LKYHPRVLYIDIDVHHGDGVQDAFYLTDRVMTVSFHKYGGGFFPCSGDMYEIGAEGGRYYSVNVRNRDLSPHSSHKRMFR 238 (285)
Q Consensus 159 ~~~~~rv~IvD~DvHhGnGtq~~f~~d~~V~~~SiH~~~~~fyP~~G~~~e~G~g~g~g~~~Nvpl~~g~~d~~y~~~~~ 238 (285)
+++.+||+|||||||||||||+||++||+|+|+|+|+++..|||+||..+|+|.|.|+||++|||||+|++|++|+.+|+
T Consensus 178 l~~~~RVliID~DVHHGnGTqeiF~~dp~Vl~vSiHq~~~~fyPgtG~~~e~G~g~G~g~~vNVPL~~G~~D~~Yl~~f~ 257 (429)
T PTZ00346 178 LKCHDRVLYVDIDMHHGDGVDEAFCTSDRVFTLSLHKFGESFFPGTGHPRDVGYGRGRYYSMNLAVWDGITDFYYLGLFE 257 (429)
T ss_pred HHcCCeEEEEeCCCCCCchHHHHHcCCCCeEEEEecCCCCCCCCCCCCccccCCCCCceeEEeeeCCCCcCHHHHHHHHH
Confidence 99999999999999999999999999999999999999878999999999999999999999999999999999999998
Q ss_pred H----HHhccCCcEEEEcCCc------cccCccccCHHHHHHHHHHHHhhccCCC
Q psy10342 239 E----RVHSLLPFVFVVFFSS------GLGKLFRFSSKTIFFCANFLAKRKSSSV 283 (285)
Q Consensus 239 ~----~l~~~~Pdlivv~aG~------plg~~~~ls~~g~~~~~~~l~~~~~~~~ 283 (285)
+ +++.|+||+||||||| ||| +|+||.+||.++++++++++.|++
T Consensus 258 ~ii~p~l~~F~PdlIvvsaG~Da~~~DpLg-~l~LT~~g~~~~~~~l~~~~~plv 311 (429)
T PTZ00346 258 HALHSIVRRYSPDAIVLQCGADSLAGDRLG-LLNLSSFGHGQCVQAVRDLGIPML 311 (429)
T ss_pred HHHHHHHHhcCCCEEEEECCccCCCCCCCC-CceeCHHHHHHHHHHHHhcCCCEE
Confidence 5 4567899999999999 999 999999999999999999887754
No 3
>KOG1342|consensus
Probab=100.00 E-value=6.1e-81 Score=567.09 Aligned_cols=283 Identities=59% Similarity=1.042 Sum_probs=274.0
Q ss_pred CCCCcEEEEEcccccCCCCCCCCCCChhHHHHHHHHHHhCCCCCCceEeCCCCCCHHHHhccCCHHHHHHHHhcCCCchh
Q psy10342 1 MSNKTVSYFYNPDVGNFHYGAKHPMKPHRLSVINSLILGYGLHKKMQIYRPYKASYHDMCRFHSAEYIDFLHTVSPDKIH 80 (285)
Q Consensus 1 m~~~~v~~iy~~~~~~~~~~~~Hpe~p~R~~~i~~~L~~~gl~~~~~~~~~~~as~e~L~~vHs~~Yv~~l~~~~~~~~~ 80 (285)
+++++|+|+|+++.+.+.++.+|||+|.|++++++++..++|.+.+++.+|..|+.+||.++||.+||++|+++++++..
T Consensus 4 ~~k~~V~y~yd~~vg~~~Yg~~hpmkP~R~~mth~Lv~~YgL~k~M~i~~p~~a~~~dm~~FHt~eYi~fL~~V~p~n~~ 83 (425)
T KOG1342|consen 4 LIKRRVSYFYDPDVGNFHYGQGHPMKPHRIRMTHSLVLNYGLYKKMEIYRPDKASAQDMTRFHTDEYINFLQSVTPENME 83 (425)
T ss_pred cCCceEEEEecCccccccccCCCCCCcceehhhhHHHHhcchhhceeeccCCCCCHHHHHhhchHHHHHHHhhCCccccc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred hhhhhhcccccCCCCCCChhHHHHHHHHhhHHHHHHHHHhcCccCeEEeCCCCCCCCCCCCCCCccccchHHHHHHHHHh
Q psy10342 81 EHTKFLCQFASGEDCPIFHGLYDFCSMYTGASLEGAIQLNNNCCDIAINWSGGLHHAKKSEASGFCYVNDIVIAILELLK 160 (285)
Q Consensus 81 ~~~~~~~~~~~~~d~~~~~~~~~~a~~a~g~~l~aa~~~~~g~~~~a~~~~gG~HHA~~~~~~GFC~~NnvaiAa~~l~~ 160 (285)
.+.+++.+|++++|||++.++|+.|++++||+|.||.++.++++++||||+||+|||++++|+||||+|||++||..|++
T Consensus 84 ~~~~~~~~fNvg~DCPvF~gL~~fC~~~~GgSl~aa~kLn~~~~dIaINW~GGlHHAKK~eASGFCYvNDIVL~ILeLlK 163 (425)
T KOG1342|consen 84 TFNKELKQFNVGEDCPVFDGLYDYCQLYTGGSLNAAQKLNRGECDIAINWAGGLHHAKKSEASGFCYVNDIVLGILELLK 163 (425)
T ss_pred ccchHHHhcCCCCCCccccCHHHHHHHhcccchHHHHHhCCCCceEEEecCcccccccccccCcceeehHHHHHHHHHHH
Confidence 77778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEEeccccCCcchhhhhccCCCEEEEEeeecCCCCCCCCCCCccccCCCCcccEEEeeCCCCCChHHHHHHHHHH
Q psy10342 161 YHPRVLYIDIDVHHGDGVQDAFYLTDRVMTVSFHKYGGGFFPCSGDMYEIGAEGGRYYSVNVRNRDLSPHSSHKRMFRER 240 (285)
Q Consensus 161 ~~~rv~IvD~DvHhGnGtq~~f~~d~~V~~~SiH~~~~~fyP~~G~~~e~G~g~g~g~~~Nvpl~~g~~d~~y~~~~~~~ 240 (285)
.++||++||+|+|||||+|++|+..++|+|+|+|.|++.||||||+..++|.|+|+.|.|||||.+|++|+.|..+|+++
T Consensus 164 ~h~RVLYIDIDvHHGDGVEeAFy~TDRVmTvSfHKyg~~fFPGTG~l~d~G~~kGkyyavNVPL~dGidD~sy~~if~pI 243 (425)
T KOG1342|consen 164 YHKRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKYGPGFFPGTGDLSDIGAGKGKYYAVNVPLKDGIDDESYESIFKPI 243 (425)
T ss_pred hCCceEEEEecccCCccHHHHHhccceeEEEEEEeccCCCCCCCCcceeccCCCCceEEEccchhccCCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999998899999999999999999999999999999999999999976
Q ss_pred H----hccCCcEEEEcCCc------cccCccccCHHHHHHHHHHHHhhccCCCC
Q psy10342 241 V----HSLLPFVFVVFFSS------GLGKLFRFSSKTIFFCANFLAKRKSSSVI 284 (285)
Q Consensus 241 l----~~~~Pdlivv~aG~------plg~~~~ls~~g~~~~~~~l~~~~~~~~i 284 (285)
+ +.|+|++||+|||. +|| .||||++|+++|++.|+++++|+++
T Consensus 244 i~~v~e~f~P~AiVLQCGaDSL~gDRlg-cFnLsi~Gh~~Cv~fvksfn~pllv 296 (425)
T KOG1342|consen 244 ISKVMERFQPEAIVLQCGADSLAGDRLG-CFNLSIKGHAECVKFVKSFNLPLLV 296 (425)
T ss_pred HHHHHHHhCCceEEEEcCCccccCCccc-eeeecchhHHHHHHHHHHcCCcEEE
Confidence 5 55699999999999 999 9999999999999999999999864
No 4
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.8e-76 Score=547.71 Aligned_cols=267 Identities=28% Similarity=0.427 Sum_probs=248.7
Q ss_pred CcEEEEEcccccCCCCCCCCCCChhHHHHHHHHHHhCCCCCCceEeCCCCCCHHHHhccCCHHHHHHHHhcCCCchhhhh
Q psy10342 4 KTVSYFYNPDVGNFHYGAKHPMKPHRLSVINSLILGYGLHKKMQIYRPYKASYHDMCRFHSAEYIDFLHTVSPDKIHEHT 83 (285)
Q Consensus 4 ~~v~~iy~~~~~~~~~~~~Hpe~p~R~~~i~~~L~~~gl~~~~~~~~~~~as~e~L~~vHs~~Yv~~l~~~~~~~~~~~~ 83 (285)
+++.++||+.+..|.++..|||+|.|++++.++|++.++...+++++|++++.++|++||+++||++|++.++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~Hpe~p~R~~~~~~~l~~~~~~~~~~~~~p~~~~~~~l~~vH~~~yv~~l~~~~~~~----- 76 (340)
T COG0123 2 MKTALIYHPEFLEHEPPPGHPENPDRLRLILELLESSGLPDSLELVEPRPATLEELLLVHSPDYVEFLESLSEEE----- 76 (340)
T ss_pred CcceEeeCHHHhcCCCCCCCCCChHHHHHHHHHHHhcCccccccccCCCcCCHHHHHhhCCHHHHHHHHHhcccc-----
Confidence 478899999999999999999999999999999999998888899999999999999999999999999887542
Q ss_pred hhhcccccCCCCCCChhHHHHHHHHhhHHHHHHHHHhcCccCeEE-eCCCCCCCCCCCCCCCccccchHHHHHHHHHhc-
Q psy10342 84 KFLCQFASGEDCPIFHGLYDFCSMYTGASLEGAIQLNNNCCDIAI-NWSGGLHHAKKSEASGFCYVNDIVIAILELLKY- 161 (285)
Q Consensus 84 ~~~~~~~~~~d~~~~~~~~~~a~~a~g~~l~aa~~~~~g~~~~a~-~~~gG~HHA~~~~~~GFC~~NnvaiAa~~l~~~- 161 (285)
+.+.++.|||+++++|++|++++|++++|++.+++|+...++ .+||| |||++++++|||+|||+||||++|+++
T Consensus 77 ---~~~~~d~d~~~s~~~~~~a~~a~G~al~A~~~v~~g~~~~~~~~rppg-HHA~~~~a~GFC~fNn~Aiaa~~l~~~~ 152 (340)
T COG0123 77 ---GYGNLDGDTPVSPGTYEAARLAAGGALTAVDAVLEGEDNAFALVRPPG-HHAGRDRASGFCLFNNVAIAAKYLLKKG 152 (340)
T ss_pred ---ccccccCCCccChHHHHHHHHHhhHHHHHHHHHHcCccceEEECCCCc-ccccCCCCceeeeecHHHHHHHHHHHcC
Confidence 146788999999999999999999999999999998654444 45555 999999999999999999999999997
Q ss_pred CCcEEEEeccccCCcchhhhhccCCCEEEEEeeecCCCCCCCCCCCccccCCCCcccEEEeeCCCCCChHHHHHHHHH--
Q psy10342 162 HPRVLYIDIDVHHGDGVQDAFYLTDRVMTVSFHKYGGGFFPCSGDMYEIGAEGGRYYSVNVRNRDLSPHSSHKRMFRE-- 239 (285)
Q Consensus 162 ~~rv~IvD~DvHhGnGtq~~f~~d~~V~~~SiH~~~~~fyP~~G~~~e~G~g~g~g~~~Nvpl~~g~~d~~y~~~~~~-- 239 (285)
.+||+|||||+|||||||+|||+||+|+++|+|+++..+||+||..+|+|.|+ +||++|||||+|++|++|+.+|+.
T Consensus 153 ~~RVaIiD~DvHHGnGTqeify~~~~V~~~S~H~~~~~~yPgtg~~~e~g~g~-~g~~vNiPLp~g~~d~~y~~a~~~~v 231 (340)
T COG0123 153 VKRVAIIDFDVHHGNGTQEIFYDDDDVLTVSLHQDGRPFYPGTGGADEIGEGK-EGNNVNIPLPPGTGDDSYLEALEEIV 231 (340)
T ss_pred CCcEEEEEecCCCChhhHHHHccCCCeEEEeccCCCCCCCCcCCCccccccCc-ccceEeeecCCCCCcHHHHHHHHHHH
Confidence 59999999999999999999999999999999999888999999999999999 999999999999999999999996
Q ss_pred --HHhccCCcEEEEcCCc------cccCccccCHHHHHHHHHHHHhhccC
Q psy10342 240 --RVHSLLPFVFVVFFSS------GLGKLFRFSSKTIFFCANFLAKRKSS 281 (285)
Q Consensus 240 --~l~~~~Pdlivv~aG~------plg~~~~ls~~g~~~~~~~l~~~~~~ 281 (285)
+++.|+||+||+|||| ||+ +|+||.++|.++++++++++..
T Consensus 232 ~~~~~~f~PdlvivsaG~D~h~~Dpl~-~~~Lt~~~~~~~~~~v~~~a~~ 280 (340)
T COG0123 232 LPLLEEFKPDLVIVSAGFDAHRGDPLG-RLNLTEEGYAKIGRAVRKLAEG 280 (340)
T ss_pred HHHHHhcCCCEEEEecCcccCCCCccc-eeecCHHHHHHHHHHHHHHHHh
Confidence 4577899999999999 999 9999999999999999999874
No 5
>PF00850 Hist_deacetyl: Histone deacetylase domain; InterPro: IPR023801 Regulation of transcription is, in part, modulated by reversible histone acetylation on several lysine. Histone deacetylases (HDA) catalyse the removal of the acetyl group. Histone deacetylases, acetoin utilization proteins and acetylpolyamine amidohydrolases are all members of this ancient protein superfamily []. HDAs function in multi-subunit complexes, reversing the acetylation of histones by histone acetyltransferases [, ], and are also believed to deacetylate general transcription factors such as TFIIF and sequence-specific transcription factors such as p53 []. Thus, HDAs contribute to the regulation of transcription, in particular transcriptional repression []. At N-terminal tails of histones, removal of the acetyl group from the epsilon-amino group of a lysine side chain will restore its positivecharge, which may stabilise the histone-DNA interaction and prevent activating transcription factors binding to promoter elements []. HDAs play important roles in the cell cycle and differentiation, and their deregulation can contribute to the development of cancer [, ]. This entry represents the structural domain found in histone deacetylases. It consists of a 3-layer(alpha-beta-alpha) sandwich.; PDB: 4A69_A 2VQV_A 2VQO_A 2VQJ_A 2VQQ_B 2VQM_A 2VQW_G 3MAX_C 3MEN_D 1T64_B ....
Probab=100.00 E-value=5.9e-74 Score=529.93 Aligned_cols=261 Identities=30% Similarity=0.461 Sum_probs=205.4
Q ss_pred cccccCCCCCCCCCCChhHHHHHHHHHHhC-CCCCCceEeCCCCCCHHHHhccCCHHHHHHHHhcCCCchhhh---hhhh
Q psy10342 11 NPDVGNFHYGAKHPMKPHRLSVINSLILGY-GLHKKMQIYRPYKASYHDMCRFHSAEYIDFLHTVSPDKIHEH---TKFL 86 (285)
Q Consensus 11 ~~~~~~~~~~~~Hpe~p~R~~~i~~~L~~~-gl~~~~~~~~~~~as~e~L~~vHs~~Yv~~l~~~~~~~~~~~---~~~~ 86 (285)
||+|. +.+++.|||+|+|++.+.+.|++. ++++. ++|+.++|++|||++||+.|++.+....... ....
T Consensus 1 ~~~~~-~~~~~~Hpe~p~R~~~i~~~L~~~~~l~~~------~~a~~~~L~~vH~~~Yv~~l~~~~~~~~~~~~~~~~~~ 73 (311)
T PF00850_consen 1 HPQYQ-HQLGDGHPESPERLESIVEALKESYGLLPR------RPATDEELLRVHDPEYVDFLESASKEAKEEEEAGSPEF 73 (311)
T ss_dssp ----T-T-CCTTSSSCTHHHHHHHHHHHHTTTGGGG----------HHHHTTTS-HHHHHHHHHHHHHTSGCTHHHHHHH
T ss_pred CCccc-CCCCCCcCCCHHHHHHHHHHHHHhcCCCCC------CCCCHHHHHHcCCHHHHHHHHHhccccccccccccccc
Confidence 68888 889999999999999888888875 77644 9999999999999999999997653221110 0000
Q ss_pred cccccCCCCCCChhHHHHHHHHhhHHHHHHHHHhcC--ccCeEEeCCCCCCCCCCCCCCCccccchHHHHHHHHHhcC--
Q psy10342 87 CQFASGEDCPIFHGLYDFCSMYTGASLEGAIQLNNN--CCDIAINWSGGLHHAKKSEASGFCYVNDIVIAILELLKYH-- 162 (285)
Q Consensus 87 ~~~~~~~d~~~~~~~~~~a~~a~g~~l~aa~~~~~g--~~~~a~~~~gG~HHA~~~~~~GFC~~NnvaiAa~~l~~~~-- 162 (285)
.....+.|||+++++|+++++++|+++.|++.+++| +..+|+++||| |||++++++|||+||||||||++|++++
T Consensus 74 ~~~~~~~dt~~~~~~~~~a~~a~g~~l~a~~~v~~g~~~~~~a~~rppg-HHA~~~~a~GFC~~Nnvaiaa~~l~~~~~~ 152 (311)
T PF00850_consen 74 PNILDDGDTPISPGSWEAARLAAGGTLEAADAVLSGEIKNAFALVRPPG-HHAERDRAMGFCYFNNVAIAAKYLRKKYGL 152 (311)
T ss_dssp CCBTSSSSSEBCTTHHHHHHHHHHHHHHHHHHHHTTSSSEEEEEESS---TT-BTTBBBTTBSS-HHHHHHHHHHHTTTT
T ss_pred ccccCCCCcceehHHHHHHHHHHHHHHHHHHhhhcccccceeeecCccc-cccCcCcCcceeeeccHHHHHHHHhhcccc
Confidence 011116799999999999999999999999999998 45688888888 9999999999999999999999999953
Q ss_pred CcEEEEeccccCCcchhhhhccCCCEEEEEeeecCCCCCC-CCCCCccccCCCCcccEEEeeCCCCCChHHHHHHHHHHH
Q psy10342 163 PRVLYIDIDVHHGDGVQDAFYLTDRVMTVSFHKYGGGFFP-CSGDMYEIGAEGGRYYSVNVRNRDLSPHSSHKRMFRERV 241 (285)
Q Consensus 163 ~rv~IvD~DvHhGnGtq~~f~~d~~V~~~SiH~~~~~fyP-~~G~~~e~G~g~g~g~~~Nvpl~~g~~d~~y~~~~~~~l 241 (285)
+||+|||||+|||||||+||++||+|+|+|||+++..||| +||..+|+|.|+|+|+++|||||+|++|++|+.+|++++
T Consensus 153 ~rV~iiD~DvHhGnGtq~if~~d~~V~~~SiH~~~~~~yP~~tG~~~e~G~~~g~g~~~NipL~~g~~d~~y~~~~~~~l 232 (311)
T PF00850_consen 153 KRVAIIDFDVHHGNGTQEIFYDDPRVLYISIHQYPGNFYPFGTGFPDEIGEGKGKGYNLNIPLPPGTGDDEYLEAFEEIL 232 (311)
T ss_dssp SSEEEEE-SSS--HHHHHHTTT-SSEEEEEEEE-CTTSTTTSS--TT--ESGGGTTSEEEEEE-TTEBHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCcccchhheeCCCCEEecCccccccccCCCcCCCccccCCCcccceeEecccccccchHHHHHHHhhcc
Confidence 8999999999999999999999999999999999888999 999999999999999999999999999999999998654
Q ss_pred ----hccCCcEEEEcCCc------cccCccccCHHHHHHHHHHHHhhcc
Q psy10342 242 ----HSLLPFVFVVFFSS------GLGKLFRFSSKTIFFCANFLAKRKS 280 (285)
Q Consensus 242 ----~~~~Pdlivv~aG~------plg~~~~ls~~g~~~~~~~l~~~~~ 280 (285)
++|+||+||||||| |+| +++||++||.+++++|++++.
T Consensus 233 ~~~~~~f~P~~ivvsaG~D~~~~Dplg-~~~lt~~~~~~~~~~~~~~a~ 280 (311)
T PF00850_consen 233 LPALEEFRPDLIVVSAGFDAHAGDPLG-GLNLTPEGYRELTRRLKSLAK 280 (311)
T ss_dssp HHHHHHHT-SEEEEEE-STTBTTSTT--SEBB-HHHHHHHHHHHHTTHS
T ss_pred ccchhcccCcEEEEccCcccchhcccc-CcCCCHHHHHHHHHHHHHHHH
Confidence 66799999999999 999 999999999999999999887
No 6
>KOG1343|consensus
Probab=100.00 E-value=1.5e-43 Score=354.72 Aligned_cols=247 Identities=26% Similarity=0.348 Sum_probs=193.7
Q ss_pred CCCCCChhHHHHHHHHHHhCCCCCCceEeCCCCCCHHHHhccCCHHHHHHHHhcCCCc----hhhhhhhhcccccCCCCC
Q psy10342 21 AKHPMKPHRLSVINSLILGYGLHKKMQIYRPYKASYHDMCRFHSAEYIDFLHTVSPDK----IHEHTKFLCQFASGEDCP 96 (285)
Q Consensus 21 ~~Hpe~p~R~~~i~~~L~~~gl~~~~~~~~~~~as~e~L~~vHs~~Yv~~l~~~~~~~----~~~~~~~~~~~~~~~d~~ 96 (285)
..||+.|.| .+..+. .|++.+|+.+ ||.++++.||+..|+..+.+..... ..+.......++.+.|+.
T Consensus 463 ~~~~~~p~r--~~t~~~--~gl~~~c~r~----at~~el~~vHs~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~dt~ 534 (797)
T KOG1343|consen 463 SRSPESPAR--FTTGLH--TGLLGKCERI----ATLEELQLVHSEAHVLLYGSRKLLGDLSLKFESRLPCGGIGVDSDTW 534 (797)
T ss_pred cCCcccchh--hhcccc--cccccccccc----cchhhhhhcccchhhcccchhhhcccccchhhhhccccceeecccHH
Confidence 367999999 222222 7888888777 9999999999999999965221111 000001112233344443
Q ss_pred CChhH-HHHHHHHhhHHHHHHHHHhcCccCeEEeCCCCCCCCCCCCCCCccccchHHHHHHHHHhcC--CcEEEEecccc
Q psy10342 97 IFHGL-YDFCSMYTGASLEGAIQLNNNCCDIAINWSGGLHHAKKSEASGFCYVNDIVIAILELLKYH--PRVLYIDIDVH 173 (285)
Q Consensus 97 ~~~~~-~~~a~~a~g~~l~aa~~~~~g~~~~a~~~~gG~HHA~~~~~~GFC~~NnvaiAa~~l~~~~--~rv~IvD~DvH 173 (285)
+.... -.++++++++.+..+..+.+ ++|+.|||| |||.+..++|||+|||+|||+++++... +||+|+|||||
T Consensus 535 ~~~~~ssga~~~av~~v~~~~~~~~~---g~avvRppG-Hha~~~~a~gfc~fn~vaiaak~l~~~~~~~rilivdwDvh 610 (797)
T KOG1343|consen 535 WNELHSSGAARLAVGCVIELAFKVAS---GFAVVRPPG-HHAEASTAMGFCFFNSVAIAAKLLQQRSKASRILIVDWDVH 610 (797)
T ss_pred HHHHHHHHHHHHhcchhhhhhhhhhc---ceeEecCCc-cccccCCcceeeeecchhhhhHHhhhhhhhcceEEEeeccc
Confidence 33221 12333444444444444443 499999999 9999999999999999999999998865 89999999999
Q ss_pred CCcchhhhhccCCCEEEEEeeecCCC-CCCCCCCCccccCCCCcccEEEeeCCCC-CChHHHHHHHHH----HHhccCCc
Q psy10342 174 HGDGVQDAFYLTDRVMTVSFHKYGGG-FFPCSGDMYEIGAEGGRYYSVNVRNRDL-SPHSSHKRMFRE----RVHSLLPF 247 (285)
Q Consensus 174 hGnGtq~~f~~d~~V~~~SiH~~~~~-fyP~~G~~~e~G~g~g~g~~~Nvpl~~g-~~d~~y~~~~~~----~l~~~~Pd 247 (285)
||||||++|++||+|+|+|+|++.++ |||++|..+|+|.+.|+|+++|||++.+ .+|.+|+.+|+. +..+|.||
T Consensus 611 hgngtq~~f~~~~~vlyislhr~~~G~~fp~~g~~~e~g~~~g~g~~vNv~~~~~~~~D~ey~~a~~~vv~Pia~~F~pd 690 (797)
T KOG1343|consen 611 HGNGTQQAFYSDPSVLYISLHRHDDGNFFPGSGAPDEVGKGEGVGFNVNVAWTGGLDPDAEYLAAFRTVVMPIAYEFNPD 690 (797)
T ss_pred CCcceeeeeccCccccccccchhccCCcCCCCCCchhcccccccceeecccccCCCCCCHHHHHHHHHhhHHHHHHhCCC
Confidence 99999999999999999999998776 9999999999999999999999999865 447999999885 45667999
Q ss_pred EEEEcCCc------cccCccccCHHHHHHHHHHHHhhcc
Q psy10342 248 VFVVFFSS------GLGKLFRFSSKTIFFCANFLAKRKS 280 (285)
Q Consensus 248 livv~aG~------plg~~~~ls~~g~~~~~~~l~~~~~ 280 (285)
+|++|+|| ||| ++++|.++|+.+++.|++++-
T Consensus 691 ~VlvSagfDaa~~dplg-~~~vt~~~~~~lt~~l~~lag 728 (797)
T KOG1343|consen 691 LVLVSAGFDAAEGDPLG-GYKVTAECFGYLTQQLMGLAG 728 (797)
T ss_pred eEEEeccccccccCccc-cccccHhHHHHHHHHHHHhcC
Confidence 99999999 999 999999999999999999873
No 7
>KOG1344|consensus
Probab=100.00 E-value=3.8e-43 Score=302.02 Aligned_cols=268 Identities=20% Similarity=0.284 Sum_probs=224.5
Q ss_pred CCCcEEEEEcccccCCC--CCCCCCCChhHHHHHHHHHHhCCCCCCceEeCCCCCCHHHHhccCCHHHHHHHHhcCCCch
Q psy10342 2 SNKTVSYFYNPDVGNFH--YGAKHPMKPHRLSVINSLILGYGLHKKMQIYRPYKASYHDMCRFHSAEYIDFLHTVSPDKI 79 (285)
Q Consensus 2 ~~~~v~~iy~~~~~~~~--~~~~Hpe~p~R~~~i~~~L~~~gl~~~~~~~~~~~as~e~L~~vHs~~Yv~~l~~~~~~~~ 79 (285)
|.-++.++|++.|...- ....||++..+...+++.|.+.+++.+-.+++|.++|+|+|++|||++|++.|+.....
T Consensus 12 p~~k~pIvyS~~Y~i~FmGlEkLHPFDa~Kwg~v~kfL~~~~~l~d~~lvEp~e~t~e~L~rvHtr~YLkslr~s~~v-- 89 (324)
T KOG1344|consen 12 PAGKLPIVYSRNYAIRFMGLEKLHPFDAAKWGHVHKFLCAMNLLTDETLVEPNEATKEDLLRVHTRKYLKSLRWSIKV-- 89 (324)
T ss_pred ccccccEEecCccceeecchhhcCcCcccchhHHHHHHHHhccccccccccCcccCHHHHHhHhhHHHHHHhhcccee--
Confidence 34588999999996432 45789999999999999999999999989999999999999999999999999853221
Q ss_pred hhhhhhhcccccCCCCCCChhHHHHHHHHhhHHHHHHHHHhcCccCeEEeCCCCCCCCCCCCCCCccccchHHHHHHHHH
Q psy10342 80 HEHTKFLCQFASGEDCPIFHGLYDFCSMYTGASLEGAIQLNNNCCDIAINWSGGLHHAKKSEASGFCYVNDIVIAILELL 159 (285)
Q Consensus 80 ~~~~~~~~~~~~~~d~~~~~~~~~~a~~a~g~~l~aa~~~~~g~~~~a~~~~gG~HHA~~~~~~GFC~~NnvaiAa~~l~ 159 (285)
..+ .+......-+.|.+........++.+|||+.|++.+++ .++|+|..||||||..++++|||.+-|+.+|+..|-
T Consensus 90 A~I-~EiP~v~flPn~~iqrk~LrPlR~QagGtilA~kLAle--~GWAINvGGGFHHcss~rGGGFC~yADItl~I~~lF 166 (324)
T KOG1344|consen 90 AQI-TEIPFVGFLPNCIIQRKLLRPLRLQAGGTILAAKLALE--RGWAINVGGGFHHCSSSRGGGFCAYADITLAIFFLF 166 (324)
T ss_pred eEE-EeccccccCchhhhhhhhccceeeccCceeehhhhhhh--cCeEEeecCccceeccCCCCceeehhhHHHHHHHHH
Confidence 111 12223334456777778888899999999999998884 569999999999999999999999999999999987
Q ss_pred hcC--CcEEEEeccccCCcchhhhhccCCCEEEEEeeecCCCCCCCCCCCccccCCCCcccEEEeeCCCCCChHHHHHHH
Q psy10342 160 KYH--PRVLYIDIDVHHGDGVQDAFYLTDRVMTVSFHKYGGGFFPCSGDMYEIGAEGGRYYSVNVRNRDLSPHSSHKRMF 237 (285)
Q Consensus 160 ~~~--~rv~IvD~DvHhGnGtq~~f~~d~~V~~~SiH~~~~~fyP~~G~~~e~G~g~g~g~~~Nvpl~~g~~d~~y~~~~ 237 (285)
++. .|++|||+|+|+|||.+.-|.++ .|.++.+ |+..+||+.-.+.+. ....|.|..|+.|++|+.-+
T Consensus 167 er~~isr~mivDLDAHQGNghErdf~~~-~vyi~d~--ynr~iyp~D~~Ak~~-------Ir~kVEl~~gTeddeYLrkl 236 (324)
T KOG1344|consen 167 ERKAISRAMIVDLDAHQGNGHERDFEDD-AVYIFDM--YNRFIYPRDHVAKES-------IRCKVELRNGTEDDEYLRKL 236 (324)
T ss_pred hhhhhhheEEEecccccCCccccccccc-eeehhhh--hhhhccchhHHHHHH-------hhheeeeecCCCchHHHHHH
Confidence 764 89999999999999999999988 7777665 566689975443321 23568889999999999887
Q ss_pred HHH----HhccCCcEEEEcCCc------cccCccccCHHHHHHHHHHHHhhccCCCCC
Q psy10342 238 RER----VHSLLPFVFVVFFSS------GLGKLFRFSSKTIFFCANFLAKRKSSSVIP 285 (285)
Q Consensus 238 ~~~----l~~~~Pdlivv~aG~------plg~~~~ls~~g~~~~~~~l~~~~~~~~ip 285 (285)
++. +.+|+||++|+.||. ||| .+.+|++|..++++.|+.+.....||
T Consensus 237 ~r~l~~sl~ef~Pd~VvYNAGTDiLeGDpLG-~L~ISp~Gi~~RDelVFr~~R~~~iP 293 (324)
T KOG1344|consen 237 KRCLMQSLAEFRPDMVVYNAGTDILEGDPLG-NLAISPEGIIERDELVFRTFRALGIP 293 (324)
T ss_pred HHHHHHHHHhhCCcEEEEeCCCccccCCCCC-CeeecccccchhhHHHHHHHHHcCCc
Confidence 754 567899999999999 999 99999999999999999988777777
No 8
>KOG1343|consensus
Probab=100.00 E-value=9e-34 Score=284.46 Aligned_cols=267 Identities=18% Similarity=0.139 Sum_probs=222.7
Q ss_pred CCcEEEEEcccccCCCC--CCCC-CCChhHHHHHHHHHHhCCCCCCceEeCC-CCCCHHHHhccCCHHHHHHHHhcCCCc
Q psy10342 3 NKTVSYFYNPDVGNFHY--GAKH-PMKPHRLSVINSLILGYGLHKKMQIYRP-YKASYHDMCRFHSAEYIDFLHTVSPDK 78 (285)
Q Consensus 3 ~~~v~~iy~~~~~~~~~--~~~H-pe~p~R~~~i~~~L~~~gl~~~~~~~~~-~~as~e~L~~vHs~~Yv~~l~~~~~~~ 78 (285)
++++.++|++.+..|.. ...| ++.++|++.+.+.+.+.++.+++.+..+ ++++.++++.+|+++|++.+.......
T Consensus 28 ~~~~~l~~~~~~~~h~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~ke~~~~~~~t~~~~ 107 (797)
T KOG1343|consen 28 QIQKQLLFAEFQKQHENQQELLEKEEKLERLRQIEEELERHRLEQPLLILRNKREAKESAVASVHVKEKLQEFLLSKKMT 107 (797)
T ss_pred hhhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHHhhccCCccccccccchhhcccchhcccccHHHHHHHHhhhhhc
Confidence 46889999999988742 2233 4889999999999999998887776666 899999999999999999987544211
Q ss_pred hhhhhhhhccc-ccCCCCCCChhHHHHHHHHhhHHHHHHHHHhcCc--cCeEEeCCCCCCCCCCCCCCCccccchHHHHH
Q psy10342 79 IHEHTKFLCQF-ASGEDCPIFHGLYDFCSMYTGASLEGAIQLNNNC--CDIAINWSGGLHHAKKSEASGFCYVNDIVIAI 155 (285)
Q Consensus 79 ~~~~~~~~~~~-~~~~d~~~~~~~~~~a~~a~g~~l~aa~~~~~g~--~~~a~~~~gG~HHA~~~~~~GFC~~NnvaiAa 155 (285)
.... .... .-.+..+.++.++..+..++|+.+...+.++.|+ ...|..+|+| ||++++...|||+|||||+++
T Consensus 108 ~e~~---l~~~~~~~~~~~~~~~s~~~a~~a~~~~~~~~~~~~~~~~~n~~a~v~p~~-hhsep~~~~~~cl~n~Va~~~ 183 (797)
T KOG1343|consen 108 AEEG---LNHSSSRYPSLYYTSASHSSADQASGSLSGSYKAVLAGKASNGKADFRPPG-HHSEPNLKVGFCLFNNVAERR 183 (797)
T ss_pred chhh---hhcccCCCCcceecCCchhhhcccCcccccccccccCCcccCccCcCCCCC-CccccchhcchhHHHHHHHHh
Confidence 1110 0111 1123456678899999999999999888877774 3578889998 999999999999999999999
Q ss_pred HHHHhcC--CcEEEEeccccCCcchhhhhcc--CCCEEEEEeeecCCC-CCCC--CCCCccccCCCCcccEEEeeCC-CC
Q psy10342 156 LELLKYH--PRVLYIDIDVHHGDGVQDAFYL--TDRVMTVSFHKYGGG-FFPC--SGDMYEIGAEGGRYYSVNVRNR-DL 227 (285)
Q Consensus 156 ~~l~~~~--~rv~IvD~DvHhGnGtq~~f~~--d~~V~~~SiH~~~~~-fyP~--~G~~~e~G~g~g~g~~~Nvpl~-~g 227 (285)
+....+. +||.|+|||+|||+|||..|++ |++|+++|+|++..+ |||+ .|..+.+|.|.+.|+++|+|+. -|
T Consensus 184 ~~~~~~~~~rri~i~d~dvh~g~Gtq~~~~~~~d~~vl~~s~~r~e~~~f~P~~~~g~~~~~~~g~~~g~~~nl~~~~~g 263 (797)
T KOG1343|consen 184 SSPLLRRKKRRILIVDWDVHHGPGTQPSSPNNGDQRVLYFSLHRLETGPFLPNITLGLATLRGGGPGLGQTGNLPWNQVG 263 (797)
T ss_pred hccccccccceeEeecccccCCCCCCCccCCCcccccccccchhcccCCcCCCCccchHHHhCcCCCcceeeccchhhcC
Confidence 9876655 8999999999999999999999 999999999999776 9997 5888899999999999999997 58
Q ss_pred CChHHHHHHHHHHH----hccCCcEEEEcCCc-------cccCccccCHHHHHHHHHH
Q psy10342 228 SPHSSHKRMFRERV----HSLLPFVFVVFFSS-------GLGKLFRFSSKTIFFCANF 274 (285)
Q Consensus 228 ~~d~~y~~~~~~~l----~~~~Pdlivv~aG~-------plg~~~~ls~~g~~~~~~~ 274 (285)
++|.+|..+|..++ .+|+||+++++||| |+| .+..|+.+|..++++
T Consensus 264 ~~~~dy~~~~~~~~~~~~~efqp~Lv~~sag~dA~lg~~~~~-~m~~tP~~~~~~~~~ 320 (797)
T KOG1343|consen 264 MTDADYEAAFLHVLLPHASEFQPDLLLVSAGFDALLGDGPVG-LMAQTPLGYAHRTSM 320 (797)
T ss_pred CcchhhhhhhhccCccchhhcCcceEEeeccccccccCcccC-cccCCcccHHHHhcc
Confidence 99999999988655 45699999999999 368 899999999999988
No 9
>KOG0121|consensus
Probab=80.10 E-value=1.5 Score=35.61 Aligned_cols=42 Identities=31% Similarity=0.422 Sum_probs=30.1
Q ss_pred CCCCCCCcccc-----chHHHHHHHHHhcC--CcEEEEeccccCCcchh
Q psy10342 138 KKSEASGFCYV-----NDIVIAILELLKYH--PRVLYIDIDVHHGDGVQ 179 (285)
Q Consensus 138 ~~~~~~GFC~~-----NnvaiAa~~l~~~~--~rv~IvD~DvHhGnGtq 179 (285)
..-.++|||++ .++-.|.+|+-... +|++-+|||.-.=+|-|
T Consensus 73 ~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~GF~eGRQ 121 (153)
T KOG0121|consen 73 FKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDAGFVEGRQ 121 (153)
T ss_pred CCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccccchhhhh
Confidence 35678999987 35555667776542 89999999986655554
No 10
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=69.34 E-value=10 Score=31.12 Aligned_cols=60 Identities=13% Similarity=-0.005 Sum_probs=36.0
Q ss_pred EEEeeCCCCCChHHHHHHHHHHHhccCCcEEEEcCCc-cccCc--cccCHHHHHHHHHHHHhhc
Q psy10342 219 SVNVRNRDLSPHSSHKRMFRERVHSLLPFVFVVFFSS-GLGKL--FRFSSKTIFFCANFLAKRK 279 (285)
Q Consensus 219 ~~Nvpl~~g~~d~~y~~~~~~~l~~~~Pdlivv~aG~-plg~~--~~ls~~g~~~~~~~l~~~~ 279 (285)
.+|..+... +-.+.+..+.+.+...+||+|++..|. .+..+ ..-..+.|.++.+.+++.+
T Consensus 25 v~N~Gi~G~-~~~~~~~~~~~~~~~~~p~~vvi~~G~ND~~~~~~~~~~~~~~~~lv~~i~~~~ 87 (171)
T cd04502 25 VVNRGFGGS-TLADCLHYFDRLVLPYQPRRVVLYAGDNDLASGRTPEEVLRDFRELVNRIRAKL 87 (171)
T ss_pred eeecCcccc-hHHHHHHHHHhhhccCCCCEEEEEEecCcccCCCCHHHHHHHHHHHHHHHHHHC
Confidence 455555433 234555566666777799999999999 44411 2223444556666666543
No 11
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=62.82 E-value=17 Score=29.64 Aligned_cols=54 Identities=17% Similarity=0.069 Sum_probs=31.4
Q ss_pred EEeeCCCCCChHHHHHHHHHHHhccCCcEEEEcCCc-cccCccccCHH----HHHHHHHHHHh
Q psy10342 220 VNVRNRDLSPHSSHKRMFRERVHSLLPFVFVVFFSS-GLGKLFRFSSK----TIFFCANFLAK 277 (285)
Q Consensus 220 ~Nvpl~~g~~d~~y~~~~~~~l~~~~Pdlivv~aG~-plg~~~~ls~~----g~~~~~~~l~~ 277 (285)
+|..++..+ -..+.+.+++.+ ..+||+||++.|. .+. . +.+.+ .+.++.+.+++
T Consensus 25 ~n~g~~G~~-~~~~~~~l~~~~-~~~pd~vvl~~G~ND~~-~-~~~~~~~~~~l~~li~~~~~ 83 (169)
T cd01828 25 ANRGISGDT-TRGLLARLDEDV-ALQPKAIFIMIGINDLA-Q-GTSDEDIVANYRTILEKLRK 83 (169)
T ss_pred EecCccccc-HHHHHHHHHHHh-ccCCCEEEEEeeccCCC-C-CCCHHHHHHHHHHHHHHHHH
Confidence 444444322 344556666666 7799999999999 444 2 24444 44445555554
No 12
>KOG4184|consensus
Probab=60.86 E-value=12 Score=35.41 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=20.6
Q ss_pred ChHHHHHHHHHHHhccCCcEEEEcCCc
Q psy10342 229 PHSSHKRMFRERVHSLLPFVFVVFFSS 255 (285)
Q Consensus 229 ~d~~y~~~~~~~l~~~~Pdlivv~aG~ 255 (285)
+.-.-++.|..++..|+||++|+ +|.
T Consensus 222 ~~m~~~E~f~~Al~~fqPdLvVv-sGl 247 (478)
T KOG4184|consen 222 PHMRAVEQFTDALKMFQPDLVVV-SGL 247 (478)
T ss_pred hHHHHHHHHHHHHHHhCCCEEEE-ech
Confidence 34455777889999999999999 565
No 13
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=59.67 E-value=10 Score=33.05 Aligned_cols=17 Identities=29% Similarity=0.485 Sum_probs=14.5
Q ss_pred hcCCcEEEEeccccCCc
Q psy10342 160 KYHPRVLYIDIDVHHGD 176 (285)
Q Consensus 160 ~~~~rv~IvD~DvHhGn 176 (285)
+.++||++||+|..+||
T Consensus 27 ~~g~~VlliD~D~~~~~ 43 (251)
T TIGR01969 27 KLGKKVLALDADITMAN 43 (251)
T ss_pred HCCCeEEEEeCCCCCcc
Confidence 44689999999998876
No 14
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=59.43 E-value=18 Score=28.97 Aligned_cols=49 Identities=8% Similarity=-0.044 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHhccCCcEEEEcCCc-cccCc--cccCHHHHHHHHHHHHhh
Q psy10342 230 HSSHKRMFRERVHSLLPFVFVVFFSS-GLGKL--FRFSSKTIFFCANFLAKR 278 (285)
Q Consensus 230 d~~y~~~~~~~l~~~~Pdlivv~aG~-plg~~--~~ls~~g~~~~~~~l~~~ 278 (285)
-......+.+.+.+.+||+|+++.|. .+..+ ..-..+.|..+.+.+++.
T Consensus 25 ~~~~~~~~~~~~~~~~pd~vvi~~G~ND~~~~~~~~~~~~~~~~~i~~i~~~ 76 (157)
T cd01833 25 IDQIAAAAADWVLAAKPDVVLLHLGTNDLVLNRDPDTAPDRLRALIDQMRAA 76 (157)
T ss_pred HHHHHHHhhhccccCCCCEEEEeccCcccccCCCHHHHHHHHHHHHHHHHHh
Confidence 34455566566667789999999988 33312 112234444555555554
No 15
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=59.32 E-value=23 Score=28.99 Aligned_cols=57 Identities=11% Similarity=0.063 Sum_probs=35.8
Q ss_pred EEEeeCCCCCChHHHHHHHHHHHhccCCcEEEEcCCc-cccCccccCHH----HHHHHHHHHHhh
Q psy10342 219 SVNVRNRDLSPHSSHKRMFRERVHSLLPFVFVVFFSS-GLGKLFRFSSK----TIFFCANFLAKR 278 (285)
Q Consensus 219 ~~Nvpl~~g~~d~~y~~~~~~~l~~~~Pdlivv~aG~-plg~~~~ls~~----g~~~~~~~l~~~ 278 (285)
.+|...... +-..++..++.-+...+||+|++..|. .+. . +.+.+ .|.++.+.+++.
T Consensus 26 v~n~g~~G~-t~~~~~~~~~~~~~~~~pd~v~i~~G~ND~~-~-~~~~~~~~~~~~~l~~~~~~~ 87 (174)
T cd01841 26 VNNLGIAGI-SSRQYLEHIEPQLIQKNPSKVFLFLGTNDIG-K-EVSSNQFIKWYRDIIEQIREE 87 (174)
T ss_pred EEecccccc-cHHHHHHHHHHHHHhcCCCEEEEEeccccCC-C-CCCHHHHHHHHHHHHHHHHHH
Confidence 466666543 345566667666667799999999999 443 1 22444 455566655553
No 16
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=59.02 E-value=19 Score=27.46 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=17.1
Q ss_pred HHHHHHhcCCcEEEEeccccCCc
Q psy10342 154 AILELLKYHPRVLYIDIDVHHGD 176 (285)
Q Consensus 154 Aa~~l~~~~~rv~IvD~DvHhGn 176 (285)
|...+...+++|+++|.|.++++
T Consensus 21 a~~~~~~~~~~~~l~d~d~~~~~ 43 (106)
T cd03111 21 AVALAKEAGRRVLLVDLDLQFGD 43 (106)
T ss_pred HHHHHhcCCCcEEEEECCCCCCC
Confidence 33333333799999999999987
No 17
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=57.36 E-value=21 Score=29.68 Aligned_cols=54 Identities=9% Similarity=-0.116 Sum_probs=32.3
Q ss_pred EEeeCCCCCChHHHHHHHHHHHhccCCcEEEEcCCc-cccCccccCHH----HHHHHHHHHHh
Q psy10342 220 VNVRNRDLSPHSSHKRMFRERVHSLLPFVFVVFFSS-GLGKLFRFSSK----TIFFCANFLAK 277 (285)
Q Consensus 220 ~Nvpl~~g~~d~~y~~~~~~~l~~~~Pdlivv~aG~-plg~~~~ls~~----g~~~~~~~l~~ 277 (285)
.|+... |..-.+++..+++ +...+||+|++..|. .+. . ..+.+ .+.++.+.+++
T Consensus 44 ~n~g~~-G~t~~~~~~~l~~-~~~~~pd~Vii~~G~ND~~-~-~~~~~~~~~~l~~li~~i~~ 102 (191)
T cd01836 44 RLFAKT-GATSADLLRQLAP-LPETRFDVAVISIGVNDVT-H-LTSIARWRKQLAELVDALRA 102 (191)
T ss_pred EEEecC-CcCHHHHHHHHHh-cccCCCCEEEEEecccCcC-C-CCCHHHHHHHHHHHHHHHHh
Confidence 344443 3345667776766 556799999999998 444 2 23444 44455555554
No 18
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=57.27 E-value=32 Score=26.32 Aligned_cols=44 Identities=18% Similarity=0.065 Sum_probs=34.5
Q ss_pred HHHHHHHHHhcCCcEEEEeccccCCcchhhhhccCCCEEEEEee
Q psy10342 151 IVIAILELLKYHPRVLYIDIDVHHGDGVQDAFYLTDRVMTVSFH 194 (285)
Q Consensus 151 vaiAa~~l~~~~~rv~IvD~DvHhGnGtq~~f~~d~~V~~~SiH 194 (285)
+...+.++++.+-.|-++|.+++..+-.+.+-...|+++-+|.+
T Consensus 17 l~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~ 60 (121)
T PF02310_consen 17 LLYLAAYLRKAGHEVDILDANVPPEELVEALRAERPDVVGISVS 60 (121)
T ss_dssp HHHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTTCSEEEEEES
T ss_pred HHHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCCCcEEEEEcc
Confidence 45555667776779999999999877778787889999999964
No 19
>PRK13236 nitrogenase reductase; Reviewed
Probab=55.69 E-value=13 Score=34.06 Aligned_cols=22 Identities=14% Similarity=0.173 Sum_probs=17.4
Q ss_pred cCCcEEEEeccccCCcchhhhhc
Q psy10342 161 YHPRVLYIDIDVHHGDGVQDAFY 183 (285)
Q Consensus 161 ~~~rv~IvD~DvHhGnGtq~~f~ 183 (285)
.++||++||.|.+.+| |.-++.
T Consensus 33 ~G~rVLliD~D~q~~~-~~~l~~ 54 (296)
T PRK13236 33 MGQRILIVGCDPKADS-TRLMLH 54 (296)
T ss_pred CCCcEEEEEccCCCCc-cchhcc
Confidence 4699999999998877 555554
No 20
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=54.39 E-value=41 Score=27.66 Aligned_cols=36 Identities=22% Similarity=0.165 Sum_probs=25.3
Q ss_pred EEEeeCCCCCChHHHHHHHHHHHhccCCcEEEEcCCc
Q psy10342 219 SVNVRNRDLSPHSSHKRMFRERVHSLLPFVFVVFFSS 255 (285)
Q Consensus 219 ~~Nvpl~~g~~d~~y~~~~~~~l~~~~Pdlivv~aG~ 255 (285)
.+|.... |.+-.+++.-+++.+...+||+|+++.|.
T Consensus 34 v~n~g~~-G~~~~~~l~~l~~~~~~~~~d~v~i~~G~ 69 (183)
T cd04501 34 VINRGIN-GDTTSQMLVRFYEDVIALKPAVVIIMGGT 69 (183)
T ss_pred EEecCcC-CccHHHHHHHHHHHHHhcCCCEEEEEecc
Confidence 3444333 33345677777776777799999999999
No 21
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=54.20 E-value=23 Score=29.32 Aligned_cols=43 Identities=7% Similarity=0.008 Sum_probs=29.5
Q ss_pred HHHHHhccCCcEEEEcCCc-cccCccccCHHHHHHHHHHHHhhcc
Q psy10342 237 FRERVHSLLPFVFVVFFSS-GLGKLFRFSSKTIFFCANFLAKRKS 280 (285)
Q Consensus 237 ~~~~l~~~~Pdlivv~aG~-plg~~~~ls~~g~~~~~~~l~~~~~ 280 (285)
+.+.+...+||+||+..|. .++ ...-..+.+..+.+.+++.+.
T Consensus 49 ~~~~~~~~~pd~vii~~G~ND~~-~~~~~~~~~~~~i~~i~~~~p 92 (177)
T cd01844 49 VAELLRDVPADLYIIDCGPNIVG-AEAMVRERLGPLVKGLRETHP 92 (177)
T ss_pred HHHHHHhcCCCEEEEEeccCCCc-cHHHHHHHHHHHHHHHHHHCc
Confidence 4455667799999999999 554 322235667777777777553
No 22
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=52.92 E-value=15 Score=31.60 Aligned_cols=24 Identities=33% Similarity=0.445 Sum_probs=16.7
Q ss_pred HHHHHHHhcCCcEEEEeccccCCc
Q psy10342 153 IAILELLKYHPRVLYIDIDVHHGD 176 (285)
Q Consensus 153 iAa~~l~~~~~rv~IvD~DvHhGn 176 (285)
+|...++..++||++||.|.+.++
T Consensus 56 LA~~la~~~g~~VLlvD~D~~~~~ 79 (207)
T TIGR03018 56 LAISLAQEYDKTVLLIDADLRRPS 79 (207)
T ss_pred HHHHHHHhcCCeEEEEECCCCChh
Confidence 333333445799999999998754
No 23
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=52.33 E-value=46 Score=26.98 Aligned_cols=45 Identities=2% Similarity=-0.154 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhccCCcEEEEcCCc-cccCccccCHHHHH----HHHHHHHh
Q psy10342 231 SSHKRMFRERVHSLLPFVFVVFFSS-GLGKLFRFSSKTIF----FCANFLAK 277 (285)
Q Consensus 231 ~~y~~~~~~~l~~~~Pdlivv~aG~-plg~~~~ls~~g~~----~~~~~l~~ 277 (285)
.+.+..++..+...+||+|++..|. ... .+.+.+.|. ++.+.+++
T Consensus 50 ~~~~~~l~~~~~~~~pd~v~i~~G~ND~~--~~~~~~~~~~~l~~li~~~~~ 99 (177)
T cd01822 50 AGGLARLPALLAQHKPDLVILELGGNDGL--RGIPPDQTRANLRQMIETAQA 99 (177)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeccCcccc--cCCCHHHHHHHHHHHHHHHHH
Confidence 3455566667777899999999998 322 124444444 44444444
No 24
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=52.05 E-value=38 Score=31.57 Aligned_cols=61 Identities=11% Similarity=0.057 Sum_probs=44.9
Q ss_pred ccEEEeeCCCCCChHHHHHHHHHHHhccCCcEEEEcCCc-cccCccccCHHHHHHHHHHHHhhccCC
Q psy10342 217 YYSVNVRNRDLSPHSSHKRMFRERVHSLLPFVFVVFFSS-GLGKLFRFSSKTIFFCANFLAKRKSSS 282 (285)
Q Consensus 217 g~~~Nvpl~~g~~d~~y~~~~~~~l~~~~Pdlivv~aG~-plg~~~~ls~~g~~~~~~~l~~~~~~~ 282 (285)
-+.+|-|=|. .+++++.+.++......+.+-+|+-+|. |-| +..+-|.++.+.+++.+.++
T Consensus 101 ~Tein~~Gp~-is~~~~~~~l~~~~~~l~~~d~VvlsGSlP~g----~~~d~y~~li~~~~~~g~~v 162 (310)
T COG1105 101 ETEINFPGPE-ISEAELEQFLEQLKALLESDDIVVLSGSLPPG----VPPDAYAELIRILRQQGAKV 162 (310)
T ss_pred EEEecCCCCC-CCHHHHHHHHHHHHHhcccCCEEEEeCCCCCC----CCHHHHHHHHHHHHhcCCeE
Confidence 4556665554 5677777666665555767666777998 888 89999999999999876554
No 25
>cd05781 DNA_polB_B3_exo DEDDy 3'-5' exonuclease domain of Sulfurisphaera ohwakuensis DNA polymerase B3 and similar archaeal family-B DNA polymerases. The 3'-5' exonuclease domain of archaeal proteins with similarity to Sulfurisphaera ohwakuensis DNA polymerase B3. B3 is a family-B DNA polymerase. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. B3 exhibits both polymerase and 3'-5' exonuclease activities. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. The exonuclease domain of family B polymerases also contains a beta hairpin structure that plays an important role in active site switching in the event of nucleotide misincorporation. Archaeal proteins that are involved in DNA replicatio
Probab=50.86 E-value=1.5e+02 Score=25.17 Aligned_cols=66 Identities=21% Similarity=0.213 Sum_probs=42.6
Q ss_pred cEEEEeccccCCcchhhhhccCCCEEEEEeeecCCCCCCCCCCCccccCCCCcccEEEeeCCCCCChHHHHHHHHHHHhc
Q psy10342 164 RVLYIDIDVHHGDGVQDAFYLTDRVMTVSFHKYGGGFFPCSGDMYEIGAEGGRYYSVNVRNRDLSPHSSHKRMFRERVHS 243 (285)
Q Consensus 164 rv~IvD~DvHhGnGtq~~f~~d~~V~~~SiH~~~~~fyP~~G~~~e~G~g~g~g~~~Nvpl~~g~~d~~y~~~~~~~l~~ 243 (285)
|++-+|+-+.-..|.-+ ...+.|+-||+..... . ...+ ...+.+..+-+..|...+.+
T Consensus 4 ~~l~fDIEt~~~~gfp~--~~~d~Ii~Is~~~~~g-------~----------~~~~---~~~~~~E~~lL~~F~~~i~~ 61 (188)
T cd05781 4 KTLAFDIEVYSKYGTPN--PRRDPIIVISLATSNG-------D----------VEFI---LAEGLDDRKIIREFVKYVKE 61 (188)
T ss_pred eEEEEEEEecCCCCCCC--CCCCCEEEEEEEeCCC-------C----------EEEE---EecCCCHHHHHHHHHHHHHH
Confidence 78889998874444211 2235788888754321 1 0011 12345678899999999999
Q ss_pred cCCcEEEE
Q psy10342 244 LLPFVFVV 251 (285)
Q Consensus 244 ~~Pdlivv 251 (285)
.+||+|+=
T Consensus 62 ~dPd~i~g 69 (188)
T cd05781 62 YDPDIIVG 69 (188)
T ss_pred cCCCEEEe
Confidence 99998873
No 26
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.
Probab=50.24 E-value=23 Score=30.39 Aligned_cols=18 Identities=22% Similarity=0.540 Sum_probs=12.2
Q ss_pred HhccCCcEEEEcCCc-ccc
Q psy10342 241 VHSLLPFVFVVFFSS-GLG 258 (285)
Q Consensus 241 l~~~~Pdlivv~aG~-plg 258 (285)
+..++||+|||..|. .++
T Consensus 85 l~~~~pd~VvI~~G~ND~~ 103 (214)
T cd01820 85 LDGVNPKVVVLLIGTNNIG 103 (214)
T ss_pred ccCCCCCEEEEEecccccC
Confidence 445578888888887 444
No 27
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=47.94 E-value=17 Score=29.68 Aligned_cols=21 Identities=19% Similarity=0.115 Sum_probs=16.5
Q ss_pred HhcCCcEEEEeccccCCcchh
Q psy10342 159 LKYHPRVLYIDIDVHHGDGVQ 179 (285)
Q Consensus 159 ~~~~~rv~IvD~DvHhGnGtq 179 (285)
.++++||++||.|...||-+.
T Consensus 25 ~~~g~~vllvD~D~~~~~~~~ 45 (179)
T cd02036 25 AQLGYKVVLIDADLGLRNLDL 45 (179)
T ss_pred HhCCCeEEEEeCCCCCCCchh
Confidence 345799999999998876544
No 28
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=47.26 E-value=19 Score=32.31 Aligned_cols=16 Identities=13% Similarity=0.108 Sum_probs=13.3
Q ss_pred cCCcEEEEeccccCCc
Q psy10342 161 YHPRVLYIDIDVHHGD 176 (285)
Q Consensus 161 ~~~rv~IvD~DvHhGn 176 (285)
.++||++||+|.+..+
T Consensus 30 ~G~rvLliD~Dpq~~~ 45 (275)
T PRK13233 30 HDKKVFIHGCDPKADS 45 (275)
T ss_pred cCCeEEEeccCcCcCh
Confidence 4789999999998643
No 29
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=47.17 E-value=15 Score=30.50 Aligned_cols=15 Identities=27% Similarity=0.259 Sum_probs=13.0
Q ss_pred CcEEEEeccccCCcc
Q psy10342 163 PRVLYIDIDVHHGDG 177 (285)
Q Consensus 163 ~rv~IvD~DvHhGnG 177 (285)
+||++||.|...+|-
T Consensus 25 ~~vlliD~D~~~~~~ 39 (179)
T cd03110 25 KNVVLADCDVDAPNL 39 (179)
T ss_pred hCcEEEECCCCCCch
Confidence 799999999998663
No 30
>CHL00175 minD septum-site determining protein; Validated
Probab=47.12 E-value=22 Score=32.00 Aligned_cols=20 Identities=25% Similarity=0.165 Sum_probs=16.3
Q ss_pred hcCCcEEEEeccccCCcchh
Q psy10342 160 KYHPRVLYIDIDVHHGDGVQ 179 (285)
Q Consensus 160 ~~~~rv~IvD~DvHhGnGtq 179 (285)
+.++||++||.|...||-+.
T Consensus 42 ~~g~~vlliD~D~~~~~l~~ 61 (281)
T CHL00175 42 RLGYRVALIDADIGLRNLDL 61 (281)
T ss_pred hCCCeEEEEeCCCCCCChhh
Confidence 34689999999999888553
No 31
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=46.72 E-value=18 Score=33.07 Aligned_cols=22 Identities=9% Similarity=0.193 Sum_probs=16.0
Q ss_pred hcCCcEEEEeccccCCcchhhhh
Q psy10342 160 KYHPRVLYIDIDVHHGDGVQDAF 182 (285)
Q Consensus 160 ~~~~rv~IvD~DvHhGnGtq~~f 182 (285)
+.++||++||+|....+ |+-.|
T Consensus 30 ~~g~kVLliD~D~q~~~-~~~~~ 51 (295)
T PRK13234 30 EMGQKILIVGCDPKADS-TRLIL 51 (295)
T ss_pred HCCCeEEEEeccccccc-ccccc
Confidence 44799999999998655 44333
No 32
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=45.36 E-value=66 Score=27.07 Aligned_cols=56 Identities=9% Similarity=-0.060 Sum_probs=34.7
Q ss_pred EEEeeCCCCCChHHHHHHHHHHHhccCCcEEEEcCCc-cccCccccCHHH----HHHHHHHHHh
Q psy10342 219 SVNVRNRDLSPHSSHKRMFRERVHSLLPFVFVVFFSS-GLGKLFRFSSKT----IFFCANFLAK 277 (285)
Q Consensus 219 ~~Nvpl~~g~~d~~y~~~~~~~l~~~~Pdlivv~aG~-plg~~~~ls~~g----~~~~~~~l~~ 277 (285)
.+|-.+...+. ..-+..|.+.+.+.+||+||+..|. .+. . +++.+. +..+.+.+++
T Consensus 46 v~N~Gi~G~tt-~~~~~rl~~~l~~~~pd~Vii~~GtND~~-~-~~~~~~~~~~l~~li~~~~~ 106 (191)
T PRK10528 46 VVNASISGDTS-QQGLARLPALLKQHQPRWVLVELGGNDGL-R-GFPPQQTEQTLRQIIQDVKA 106 (191)
T ss_pred EEecCcCcccH-HHHHHHHHHHHHhcCCCEEEEEeccCcCc-c-CCCHHHHHHHHHHHHHHHHH
Confidence 45555544332 3346667777777899999999999 443 2 356544 4455555554
No 33
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=43.95 E-value=63 Score=26.46 Aligned_cols=38 Identities=8% Similarity=0.042 Sum_probs=25.2
Q ss_pred HHHhccCCcEEEEcCCc-cccCccccCHHHHH----HHHHHHHh
Q psy10342 239 ERVHSLLPFVFVVFFSS-GLGKLFRFSSKTIF----FCANFLAK 277 (285)
Q Consensus 239 ~~l~~~~Pdlivv~aG~-plg~~~~ls~~g~~----~~~~~l~~ 277 (285)
..+...+||+|+++.|. .+. ....+.+.|. .+.+.+++
T Consensus 50 ~~l~~~~pd~Vii~~G~ND~~-~~~~~~~~~~~~~~~li~~i~~ 92 (189)
T cd01825 50 AQLAALPPDLVILSYGTNEAF-NKQLNASEYRQQLREFIKRLRQ 92 (189)
T ss_pred HHHhhCCCCEEEEECCCcccc-cCCCCHHHHHHHHHHHHHHHHH
Confidence 35667799999999999 555 4445665554 44444444
No 34
>PRK10818 cell division inhibitor MinD; Provisional
Probab=43.81 E-value=26 Score=31.23 Aligned_cols=18 Identities=17% Similarity=0.220 Sum_probs=14.9
Q ss_pred hcCCcEEEEeccccCCcc
Q psy10342 160 KYHPRVLYIDIDVHHGDG 177 (285)
Q Consensus 160 ~~~~rv~IvD~DvHhGnG 177 (285)
++.+||++||+|.+.||-
T Consensus 29 ~~g~~vllvD~D~~~~~~ 46 (270)
T PRK10818 29 QKGKKTVVIDFDIGLRNL 46 (270)
T ss_pred HCCCeEEEEECCCCCCCh
Confidence 346899999999988774
No 35
>cd01835 SGNH_hydrolase_like_3 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=41.85 E-value=83 Score=26.07 Aligned_cols=55 Identities=16% Similarity=0.132 Sum_probs=31.7
Q ss_pred EEeeCCCCCChHHHHHHHHHHHh----ccCCcEEEEcCCc-cccCcc-----ccCHHHHHHHHHHHH
Q psy10342 220 VNVRNRDLSPHSSHKRMFRERVH----SLLPFVFVVFFSS-GLGKLF-----RFSSKTIFFCANFLA 276 (285)
Q Consensus 220 ~Nvpl~~g~~d~~y~~~~~~~l~----~~~Pdlivv~aG~-plg~~~-----~ls~~g~~~~~~~l~ 276 (285)
+|..... .+-..++.-++..+. ..+||+|+|..|. .+. .. ..+.+.|.+..+.+.
T Consensus 41 ~N~gi~G-~t~~~~~~r~~~~~~~~~~~~~pd~V~i~~G~ND~~-~~~~~~~~~~~~~~~~~~~~ii 105 (193)
T cd01835 41 YNLGVRG-DGSEDVAARWRAEWSRRGELNVPNRLVLSVGLNDTA-RGGRKRPQLSARAFLFGLNQLL 105 (193)
T ss_pred EeecCCC-CCHHHHHHHHHHHHHhhcccCCCCEEEEEecCcccc-cccCcccccCHHHHHHHHHHHH
Confidence 3554433 334455555554332 2599999999999 443 22 466677776444443
No 36
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=41.23 E-value=22 Score=32.25 Aligned_cols=17 Identities=24% Similarity=0.489 Sum_probs=9.9
Q ss_pred HHhcCCcEEEEeccccC
Q psy10342 158 LLKYHPRVLYIDIDVHH 174 (285)
Q Consensus 158 l~~~~~rv~IvD~DvHh 174 (285)
|.+.+.||.++|.|.++
T Consensus 25 La~~G~kVg~lD~Di~q 41 (261)
T PF09140_consen 25 LARMGKKVGLLDLDIRQ 41 (261)
T ss_dssp HHCTT--EEEEE--TTT
T ss_pred HHHCCCeEEEEecCCCC
Confidence 34557999999999975
No 37
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=41.05 E-value=76 Score=26.04 Aligned_cols=26 Identities=12% Similarity=0.195 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHhcc---CCcEEEEcCCc
Q psy10342 230 HSSHKRMFRERVHSL---LPFVFVVFFSS 255 (285)
Q Consensus 230 d~~y~~~~~~~l~~~---~Pdlivv~aG~ 255 (285)
-...+..++..+... +||+||+..|.
T Consensus 45 ~~~~~~~~~~~~~~~~~~~pd~vii~~G~ 73 (199)
T cd01838 45 TRWALKVLPKIFLEEKLAQPDLVTIFFGA 73 (199)
T ss_pred HHHHHHHHHHhcCccccCCceEEEEEecC
Confidence 345667777777666 89999999999
No 38
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=40.38 E-value=32 Score=30.02 Aligned_cols=18 Identities=22% Similarity=0.390 Sum_probs=14.5
Q ss_pred HhcCCcEEEEeccccCCc
Q psy10342 159 LKYHPRVLYIDIDVHHGD 176 (285)
Q Consensus 159 ~~~~~rv~IvD~DvHhGn 176 (285)
.+.++||++||.|...||
T Consensus 27 a~~g~~vlliD~D~~~~~ 44 (261)
T TIGR01968 27 ARLGKKVVLIDADIGLRN 44 (261)
T ss_pred HHcCCeEEEEECCCCCCC
Confidence 345789999999997766
No 39
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=38.10 E-value=35 Score=32.38 Aligned_cols=55 Identities=15% Similarity=0.021 Sum_probs=37.2
Q ss_pred CCChHHHHHHHHHHHhccCCcEEEEcCCc-cccCccccCHHHHHHHHHHHHhhccCCCC
Q psy10342 227 LSPHSSHKRMFRERVHSLLPFVFVVFFSS-GLGKLFRFSSKTIFFCANFLAKRKSSSVI 284 (285)
Q Consensus 227 g~~d~~y~~~~~~~l~~~~Pdlivv~aG~-plg~~~~ls~~g~~~~~~~l~~~~~~~~i 284 (285)
-+||..|-..|.++.+.+++|++++..|. |-+....++++. ..++..+++....|
T Consensus 224 ~sGDT~~~~~~~~i~~~~~iDvall~iG~~p~~~~~hm~p~e---a~~~a~~l~ak~vI 279 (355)
T PRK11709 224 HSGDSHYSNYFAKHGNDHQIDVALGSYGENPRGITDKMTSID---ILRMAESLNAKVVI 279 (355)
T ss_pred EeCCCCccHHHHHHHhcCCCCEEEecCCCCCCCCcCCCCHHH---HHHHHHHcCCCEEE
Confidence 35788888888888888999999998887 433134577664 44444444444443
No 40
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=37.76 E-value=28 Score=30.96 Aligned_cols=19 Identities=37% Similarity=0.338 Sum_probs=14.7
Q ss_pred hcCCcEEEEeccccCCcchh
Q psy10342 160 KYHPRVLYIDIDVHHGDGVQ 179 (285)
Q Consensus 160 ~~~~rv~IvD~DvHhGnGtq 179 (285)
++++||++||+|. +||-|+
T Consensus 26 ~~g~rVLliD~D~-q~~~~~ 44 (268)
T TIGR01281 26 KLGKRVLQIGCDP-KHDSTF 44 (268)
T ss_pred hCCCeEEEEecCc-cccccc
Confidence 4578999999998 466554
No 41
>PHA02518 ParA-like protein; Provisional
Probab=37.64 E-value=31 Score=29.13 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=14.8
Q ss_pred HHhcCCcEEEEeccccCCcchh
Q psy10342 158 LLKYHPRVLYIDIDVHHGDGVQ 179 (285)
Q Consensus 158 l~~~~~rv~IvD~DvHhGnGtq 179 (285)
+.++++||++||+|. +++-+.
T Consensus 25 la~~g~~vlliD~D~-q~~~~~ 45 (211)
T PHA02518 25 LHADGHKVLLVDLDP-QGSSTD 45 (211)
T ss_pred HHhCCCeEEEEeCCC-CCChHH
Confidence 334579999999996 455443
No 42
>PF02701 zf-Dof: Dof domain, zinc finger; InterPro: IPR003851 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry consists of proteins containing a Dof domain, which is a zinc finger DNA-binding domain that shows resemblance to the Cys2 zinc finger, although it has a longer putative loop where an extra Cys residue is conserved []. AOBP, a DNA-binding protein in pumpkin (Cucurbita maxima), contains a 52 amino acid Dof domain, which is highly conserved in several DNA-binding proteins of higher plants. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent
Probab=37.59 E-value=10 Score=26.59 Aligned_cols=10 Identities=40% Similarity=0.956 Sum_probs=7.8
Q ss_pred CCccccchHH
Q psy10342 143 SGFCYVNDIV 152 (285)
Q Consensus 143 ~GFC~~Nnva 152 (285)
--|||+||--
T Consensus 16 TKFcYyNNy~ 25 (63)
T PF02701_consen 16 TKFCYYNNYN 25 (63)
T ss_pred CEEEeecCCC
Confidence 4699999963
No 43
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=37.28 E-value=39 Score=30.41 Aligned_cols=41 Identities=24% Similarity=0.515 Sum_probs=29.2
Q ss_pred CCC-ccccchHHHHHH-HHHhcCCcEEEEeccc---cCCcchhhhh
Q psy10342 142 ASG-FCYVNDIVIAIL-ELLKYHPRVLYIDIDV---HHGDGVQDAF 182 (285)
Q Consensus 142 ~~G-FC~~NnvaiAa~-~l~~~~~rv~IvD~Dv---HhGnGtq~~f 182 (285)
+.| ||..|+..=+.. ++.....-+.|||..+ |-|-||.+-+
T Consensus 111 GeGC~Cp~~allR~~l~~l~~~~~e~VivDtEAGiEHfgRg~~~~v 156 (255)
T COG3640 111 GEGCACPMNALLRRLLRHLILNRYEVVIVDTEAGIEHFGRGTIEGV 156 (255)
T ss_pred CCcccchHHHHHHHHHHHHhcccCcEEEEecccchhhhccccccCC
Confidence 445 999998864432 2333347899999998 8888887754
No 44
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=37.15 E-value=34 Score=30.63 Aligned_cols=16 Identities=13% Similarity=0.266 Sum_probs=13.7
Q ss_pred cCCcEEEEeccccCCc
Q psy10342 161 YHPRVLYIDIDVHHGD 176 (285)
Q Consensus 161 ~~~rv~IvD~DvHhGn 176 (285)
.++||++||.|.+..+
T Consensus 28 ~G~rVllvD~Dpq~~~ 43 (273)
T PRK13232 28 MGNKILLVGCDPKADS 43 (273)
T ss_pred hCCCeEEEeccccccc
Confidence 4789999999998665
No 45
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=36.22 E-value=32 Score=29.50 Aligned_cols=21 Identities=19% Similarity=0.238 Sum_probs=15.1
Q ss_pred hcCCcEEEEeccccCCcchhhh
Q psy10342 160 KYHPRVLYIDIDVHHGDGVQDA 181 (285)
Q Consensus 160 ~~~~rv~IvD~DvHhGnGtq~~ 181 (285)
+.++||++||.|.. ||-+...
T Consensus 26 ~~G~rvLliD~D~q-~~~~~~~ 46 (212)
T cd02117 26 EMGKKVLQVGCDPK-ADSTRLL 46 (212)
T ss_pred HCCCcEEEEeCCCC-CCccccc
Confidence 34789999999965 5555443
No 46
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=35.48 E-value=32 Score=30.66 Aligned_cols=19 Identities=32% Similarity=0.303 Sum_probs=14.3
Q ss_pred hcCCcEEEEeccccCCcchh
Q psy10342 160 KYHPRVLYIDIDVHHGDGVQ 179 (285)
Q Consensus 160 ~~~~rv~IvD~DvHhGnGtq 179 (285)
++++||++||.|. +||=|+
T Consensus 28 ~~G~kVLliD~Dp-q~~~t~ 46 (270)
T PRK13185 28 KLGKKVLQIGCDP-KHDSTF 46 (270)
T ss_pred HCCCeEEEEeccC-Ccchhh
Confidence 4578999999997 465554
No 47
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=35.02 E-value=34 Score=30.61 Aligned_cols=19 Identities=16% Similarity=0.351 Sum_probs=14.0
Q ss_pred hcCCcEEEEeccccCCcchh
Q psy10342 160 KYHPRVLYIDIDVHHGDGVQ 179 (285)
Q Consensus 160 ~~~~rv~IvD~DvHhGnGtq 179 (285)
++++||++||+|.. ||.|.
T Consensus 26 ~~G~~VlliD~D~q-~~~~~ 44 (275)
T TIGR01287 26 EMGKKVMIVGCDPK-ADSTR 44 (275)
T ss_pred HCCCeEEEEeCCCC-CCccc
Confidence 34689999999997 44443
No 48
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=34.79 E-value=45 Score=29.47 Aligned_cols=19 Identities=16% Similarity=0.351 Sum_probs=14.6
Q ss_pred hcCCcEEEEeccccCCcchh
Q psy10342 160 KYHPRVLYIDIDVHHGDGVQ 179 (285)
Q Consensus 160 ~~~~rv~IvD~DvHhGnGtq 179 (285)
++++||++||+|. +||-+.
T Consensus 27 ~~G~kVlliD~Dp-q~n~~~ 45 (270)
T cd02040 27 EMGKKVMIVGCDP-KADSTR 45 (270)
T ss_pred hCCCeEEEEEcCC-CCCchh
Confidence 3578999999999 466554
No 49
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=34.63 E-value=1.5e+02 Score=24.17 Aligned_cols=32 Identities=9% Similarity=-0.003 Sum_probs=19.8
Q ss_pred HHHHHhccCCcEEEEcCCc-cccCccccCHHHHHH
Q psy10342 237 FRERVHSLLPFVFVVFFSS-GLGKLFRFSSKTIFF 270 (285)
Q Consensus 237 ~~~~l~~~~Pdlivv~aG~-plg~~~~ls~~g~~~ 270 (285)
++.++ ..+||+||+..|. ... .-+.+.+.|.+
T Consensus 60 ~~~~~-~~~~d~vii~~G~ND~~-~~~~~~~~~~~ 92 (185)
T cd01832 60 LPAAL-ALRPDLVTLLAGGNDIL-RPGTDPDTYRA 92 (185)
T ss_pred HHHHH-hcCCCEEEEeccccccc-cCCCCHHHHHH
Confidence 44443 3599999999998 443 22456555554
No 50
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=33.73 E-value=83 Score=27.40 Aligned_cols=27 Identities=15% Similarity=0.181 Sum_probs=23.6
Q ss_pred CChHHHHHHHHHHHhccCCcEEEEcCCc
Q psy10342 228 SPHSSHKRMFRERVHSLLPFVFVVFFSS 255 (285)
Q Consensus 228 ~~d~~y~~~~~~~l~~~~Pdlivv~aG~ 255 (285)
.+.++|-..+-+.+...+||+|++ |||
T Consensus 62 ~~r~~~d~~l~~~l~~~~~dlvvL-AGy 88 (200)
T COG0299 62 PSREAFDRALVEALDEYGPDLVVL-AGY 88 (200)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEE-cch
Confidence 356789999999999999999988 898
No 51
>cd05785 DNA_polB_like2_exo Uncharacterized bacterial subgroup of the DEDDy 3'-5' exonuclease domain of family-B DNA polymerases. A subfamily of the 3'-5' exonuclease domain of family-B DNA polymerases. This subfamily is composed of uncharacterized bacterial family-B DNA polymerases. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are involved in metal binding and catalysis. The exonuclease domain of family-B DNA polymerases has a fundamental role in proofreading activity. It contains a beta hairpin structure that plays an important role in active site switching in the event of a nucleotide misincorporation. Family-B DNA polymerases are predominantly involved in DNA replication and DNA repair.
Probab=33.62 E-value=3.1e+02 Score=23.62 Aligned_cols=25 Identities=8% Similarity=-0.129 Sum_probs=21.2
Q ss_pred CCChHHHHHHHHHHHhccCCcEEEE
Q psy10342 227 LSPHSSHKRMFRERVHSLLPFVFVV 251 (285)
Q Consensus 227 g~~d~~y~~~~~~~l~~~~Pdlivv 251 (285)
..+..+-+..|...+.+.+||+|+=
T Consensus 55 ~~~E~~lL~~f~~~i~~~dPdii~g 79 (207)
T cd05785 55 DAAEKELLEELVAIIRERDPDVIEG 79 (207)
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEec
Confidence 4567889999999999999997753
No 52
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=32.69 E-value=49 Score=30.37 Aligned_cols=16 Identities=31% Similarity=0.434 Sum_probs=13.2
Q ss_pred hcCCcEEEEeccccCC
Q psy10342 160 KYHPRVLYIDIDVHHG 175 (285)
Q Consensus 160 ~~~~rv~IvD~DvHhG 175 (285)
+..+||++||+|...+
T Consensus 26 ~~g~rVLlID~Dpq~~ 41 (296)
T TIGR02016 26 EMGKRVLQLGCDPKHD 41 (296)
T ss_pred HCCCeEEEEEecCCCC
Confidence 3478999999999864
No 53
>cd01839 SGNH_arylesterase_like SGNH_hydrolase subfamily, similar to arylesterase (7-aminocephalosporanic acid-deacetylating enzyme) of A. tumefaciens. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=32.45 E-value=1.1e+02 Score=25.79 Aligned_cols=44 Identities=11% Similarity=0.204 Sum_probs=27.8
Q ss_pred HHHHHHHhc-cCCcEEEEcCCc-cccCccccCHHHHH----HHHHHHHhh
Q psy10342 235 RMFRERVHS-LLPFVFVVFFSS-GLGKLFRFSSKTIF----FCANFLAKR 278 (285)
Q Consensus 235 ~~~~~~l~~-~~Pdlivv~aG~-plg~~~~ls~~g~~----~~~~~l~~~ 278 (285)
..+...+.+ .+||+|++..|. .+...++++.+-|. ++.+.+++.
T Consensus 68 ~~l~~~l~~~~~pd~vii~lGtND~~~~~~~~~~~~~~~l~~lv~~i~~~ 117 (208)
T cd01839 68 TYLPQALESHSPLDLVIIMLGTNDLKSYFNLSAAEIAQGLGALVDIIRTA 117 (208)
T ss_pred HHHHHHHHhCCCCCEEEEeccccccccccCCCHHHHHHHHHHHHHHHHhc
Confidence 445566655 699999999999 44313455665554 455555553
No 54
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=31.95 E-value=47 Score=29.79 Aligned_cols=21 Identities=19% Similarity=0.281 Sum_probs=15.3
Q ss_pred hcCCcEEEEeccccCCcchhhh
Q psy10342 160 KYHPRVLYIDIDVHHGDGVQDA 181 (285)
Q Consensus 160 ~~~~rv~IvD~DvHhGnGtq~~ 181 (285)
+.++||++||+|.. ||=|+..
T Consensus 27 ~~G~rVLliD~Dpq-~n~t~~l 47 (279)
T PRK13230 27 ESGKKVLVVGCDPK-ADCTRNL 47 (279)
T ss_pred hCCCEEEEEeeCCc-ccccccc
Confidence 34689999999994 5555543
No 55
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=29.92 E-value=46 Score=29.60 Aligned_cols=18 Identities=33% Similarity=0.335 Sum_probs=13.5
Q ss_pred hcCCcEEEEeccccCCcch
Q psy10342 160 KYHPRVLYIDIDVHHGDGV 178 (285)
Q Consensus 160 ~~~~rv~IvD~DvHhGnGt 178 (285)
++++||++||.|. +||=+
T Consensus 26 ~~G~rvlliD~Dp-q~~~~ 43 (267)
T cd02032 26 KRGKKVLQIGCDP-KHDST 43 (267)
T ss_pred HCCCcEEEEecCC-CCCcc
Confidence 4579999999996 45533
No 56
>PF13472 Lipase_GDSL_2: GDSL-like Lipase/Acylhydrolase family; PDB: 1ES9_A 1WAB_A 3DT9_A 1BWQ_A 1FXW_A 3DT6_A 1BWR_A 3DT8_A 1BWP_A 2WAA_A ....
Probab=29.80 E-value=95 Score=24.44 Aligned_cols=58 Identities=12% Similarity=0.028 Sum_probs=29.5
Q ss_pred EEEeeCCCCCChHHHHHHHHHHH---hccCCcEEEEcCCc-cccC--ccccCHHHHHHHHHHHHh
Q psy10342 219 SVNVRNRDLSPHSSHKRMFRERV---HSLLPFVFVVFFSS-GLGK--LFRFSSKTIFFCANFLAK 277 (285)
Q Consensus 219 ~~Nvpl~~g~~d~~y~~~~~~~l---~~~~Pdlivv~aG~-plg~--~~~ls~~g~~~~~~~l~~ 277 (285)
..|.-.+. .+-.+++..+...+ ...+||+||++.|. .... ....+.+.|....+.+.+
T Consensus 33 ~~n~~~~G-~~~~~~~~~~~~~~~~~~~~~~d~vvi~~G~ND~~~~~~~~~~~~~~~~~l~~~i~ 96 (179)
T PF13472_consen 33 VYNLGVSG-ATSSDFLARLQRDVLRFKDPKPDLVVISFGTNDVLNGDENDTSPEQYEQNLRRIIE 96 (179)
T ss_dssp EEEEE-TT--BHHHHHHHHHHHCHHHCGTTCSEEEEE--HHHHCTCTTCHHHHHHHHHHHHHHHH
T ss_pred EEEEeecC-ccHhHHHHHHHHHHhhhccCCCCEEEEEcccccccccccccccHHHHHHHHHHHHH
Confidence 34555543 33444555555433 56799999999999 2220 344555555554444433
No 57
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=28.39 E-value=1.8e+02 Score=25.60 Aligned_cols=48 Identities=8% Similarity=-0.110 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhccCCcEEEEcCCccccCccccCHHHHHHHHHHHHhhccCC
Q psy10342 232 SHKRMFRERVHSLLPFVFVVFFSSGLGKLFRFSSKTIFFCANFLAKRKSSS 282 (285)
Q Consensus 232 ~y~~~~~~~l~~~~Pdlivv~aG~plg~~~~ls~~g~~~~~~~l~~~~~~~ 282 (285)
+.++.+.+.+.+.+||+||+ +| .+. ..+...+.+....+.+.+++.|+
T Consensus 18 ~~le~l~~~~~~~~~D~vv~-~G-Dl~-~~g~~~~~~~~~l~~l~~l~~pv 65 (224)
T cd07388 18 EALEKLVGLAPETGADAIVL-IG-NLL-PKAAKSEDYAAFFRILGEAHLPT 65 (224)
T ss_pred HHHHHHHHHHhhcCCCEEEE-CC-CCC-CCCCCHHHHHHHHHHHHhcCCce
Confidence 33444444445558998877 77 666 55556778888888887766553
No 58
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=28.08 E-value=64 Score=27.95 Aligned_cols=14 Identities=36% Similarity=0.380 Sum_probs=11.7
Q ss_pred hcCCcEEEEecccc
Q psy10342 160 KYHPRVLYIDIDVH 173 (285)
Q Consensus 160 ~~~~rv~IvD~DvH 173 (285)
+.++||++||.|..
T Consensus 28 ~~g~~VlliD~D~q 41 (246)
T TIGR03371 28 LLGEPVLAIDLDPQ 41 (246)
T ss_pred hCCCcEEEEeCCCc
Confidence 34689999999983
No 59
>PHA02528 43 DNA polymerase; Provisional
Probab=27.80 E-value=1.8e+02 Score=31.26 Aligned_cols=88 Identities=15% Similarity=0.101 Sum_probs=46.2
Q ss_pred CcEEEEeccccCCcchhhhhccCCCEEEEEeeecCCC---CC--CCCCCCccccCCCCcccEEEeeCCCCCChHHHHHHH
Q psy10342 163 PRVLYIDIDVHHGDGVQDAFYLTDRVMTVSFHKYGGG---FF--PCSGDMYEIGAEGGRYYSVNVRNRDLSPHSSHKRMF 237 (285)
Q Consensus 163 ~rv~IvD~DvHhGnGtq~~f~~d~~V~~~SiH~~~~~---fy--P~~G~~~e~G~g~g~g~~~Nvpl~~g~~d~~y~~~~ 237 (285)
-||+-+|+-+.-=+|.-+.=....-|..||++..... .| ++.+.....|...+.....++.+-.-.+..+.+..|
T Consensus 106 lrv~s~DIE~~~~~gfP~p~~~~d~IisIsl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~sE~eLL~~F 185 (881)
T PHA02528 106 IRIANLDIEVTAEDGFPDPEEAKYEIDAITHYDSIDDRFYVFDLGSVEEWDAKGDEVPQEILDKVVYMPFDTEREMLLEY 185 (881)
T ss_pred ccEEEEEEEECCCCCCCCcccCCCcEEEEEEecCCCCEEEEEEecCcccccccCCcccccccCCeeEEEcCCHHHHHHHH
Confidence 4899999999654564333222345778887543221 11 100011111110000000111111234677889999
Q ss_pred HHHHhccCCcEEE
Q psy10342 238 RERVHSLLPFVFV 250 (285)
Q Consensus 238 ~~~l~~~~Pdliv 250 (285)
...+....||+|+
T Consensus 186 ~~~i~~~DPDII~ 198 (881)
T PHA02528 186 INFWEENTPVIFT 198 (881)
T ss_pred HHHHHHhCCcEEE
Confidence 9999999999998
No 60
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=27.61 E-value=67 Score=26.46 Aligned_cols=18 Identities=33% Similarity=0.488 Sum_probs=12.6
Q ss_pred HHHhcCCcEEEEeccccC
Q psy10342 157 ELLKYHPRVLYIDIDVHH 174 (285)
Q Consensus 157 ~l~~~~~rv~IvD~DvHh 174 (285)
++.++++||++||+|.--
T Consensus 22 ~la~~g~~VlliD~D~~~ 39 (195)
T PF01656_consen 22 ALARKGKKVLLIDLDPQA 39 (195)
T ss_dssp HHHHTTS-EEEEEESTTS
T ss_pred ccccccccccccccCccc
Confidence 333467999999999844
No 61
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=27.60 E-value=64 Score=28.45 Aligned_cols=30 Identities=23% Similarity=0.122 Sum_probs=19.5
Q ss_pred HHHHHHHhcCCcEEEEeccccCCcchhhhhc
Q psy10342 153 IAILELLKYHPRVLYIDIDVHHGDGVQDAFY 183 (285)
Q Consensus 153 iAa~~l~~~~~rv~IvD~DvHhGnGtq~~f~ 183 (285)
+|...+..+.+||+.||+|-- |+-|.....
T Consensus 23 La~~La~~~~~kVLliDlDpQ-~s~t~~~~~ 52 (259)
T COG1192 23 LAAALAKRGGKKVLLIDLDPQ-GSLTSWLGL 52 (259)
T ss_pred HHHHHHHhcCCcEEEEeCCCc-chhhHhcCC
Confidence 333334344589999999997 666655443
No 62
>PRK10037 cell division protein; Provisional
Probab=26.63 E-value=51 Score=29.09 Aligned_cols=17 Identities=24% Similarity=-0.025 Sum_probs=13.3
Q ss_pred hcCCcEEEEeccccCCcc
Q psy10342 160 KYHPRVLYIDIDVHHGDG 177 (285)
Q Consensus 160 ~~~~rv~IvD~DvHhGnG 177 (285)
++++||++||+|-. ||-
T Consensus 28 ~~G~rVLlID~D~q-~~~ 44 (250)
T PRK10037 28 MLGENVLVIDACPD-NLL 44 (250)
T ss_pred hcCCcEEEEeCChh-hhH
Confidence 45789999999994 553
No 63
>PRK11519 tyrosine kinase; Provisional
Probab=25.84 E-value=1.4e+02 Score=31.13 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=15.8
Q ss_pred cCCcEEEEeccccCCcchhhhh
Q psy10342 161 YHPRVLYIDIDVHHGDGVQDAF 182 (285)
Q Consensus 161 ~~~rv~IvD~DvHhGnGtq~~f 182 (285)
.++||++||.|.+.++ +...|
T Consensus 554 ~g~rvLlID~Dlr~~~-~~~~~ 574 (719)
T PRK11519 554 TNKRVLLIDCDMRKGY-THELL 574 (719)
T ss_pred CCCcEEEEeCCCCCCc-HHHHh
Confidence 4699999999998774 33444
No 64
>PF05533 Peptidase_C42: Beet yellows virus-type papain-like endopeptidase C42; InterPro: IPR008749 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases correspond to MEROPS peptidase family C42. The type example is beet yellows virus-type papain-like endopeptidase (beet yellows virus) [].
Probab=25.66 E-value=47 Score=25.03 Aligned_cols=21 Identities=19% Similarity=0.504 Sum_probs=16.8
Q ss_pred CCCCCccccchHHHHHHHHHh
Q psy10342 140 SEASGFCYVNDIVIAILELLK 160 (285)
Q Consensus 140 ~~~~GFC~~NnvaiAa~~l~~ 160 (285)
+-+.|+||+|.++..+.+.-+
T Consensus 2 ~~~dG~CYl~H~~~~~l~~gr 22 (88)
T PF05533_consen 2 KYPDGYCYLAHVRYVCLFMGR 22 (88)
T ss_pred CCCCceehHHHHHHHHHHhCC
Confidence 356899999999988877644
No 65
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=25.56 E-value=59 Score=26.68 Aligned_cols=15 Identities=27% Similarity=0.253 Sum_probs=12.2
Q ss_pred hcCCcEEEEeccccC
Q psy10342 160 KYHPRVLYIDIDVHH 174 (285)
Q Consensus 160 ~~~~rv~IvD~DvHh 174 (285)
+.++||++||.|.-.
T Consensus 26 ~~g~~vllvD~D~q~ 40 (169)
T cd02037 26 KLGYKVGLLDADIYG 40 (169)
T ss_pred HcCCcEEEEeCCCCC
Confidence 357999999999844
No 66
>cd01830 XynE_like SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE. The P. bryantii XynE gene is located in a xylanase gene cluster. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=25.42 E-value=2.5e+02 Score=23.55 Aligned_cols=24 Identities=8% Similarity=-0.053 Sum_probs=16.9
Q ss_pred HHHHHHHH-HHhccCCcEEEEcCCc
Q psy10342 232 SHKRMFRE-RVHSLLPFVFVVFFSS 255 (285)
Q Consensus 232 ~y~~~~~~-~l~~~~Pdlivv~aG~ 255 (285)
+.+.-|.. ++..-+||+|++..|.
T Consensus 60 ~~l~r~~~~v~~~~~p~~vii~~G~ 84 (204)
T cd01830 60 SALARFDRDVLSQPGVRTVIILEGV 84 (204)
T ss_pred HHHHHHHHHHhcCCCCCEEEEeccc
Confidence 44555554 4444479999999999
No 67
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=25.04 E-value=1.9e+02 Score=23.85 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhccCCcEEEEcCCc
Q psy10342 232 SHKRMFRERVHSLLPFVFVVFFSS 255 (285)
Q Consensus 232 ~y~~~~~~~l~~~~Pdlivv~aG~ 255 (285)
.|..-++..+.+.+||+|++..|.
T Consensus 46 ~~~~~~~~~l~~~~pd~vii~~G~ 69 (200)
T cd01829 46 DWPEKLKELIAEEKPDVVVVFLGA 69 (200)
T ss_pred CHHHHHHHHHhcCCCCEEEEEecC
Confidence 355567777788899999999999
No 68
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=25.02 E-value=2.1e+02 Score=23.77 Aligned_cols=33 Identities=6% Similarity=-0.149 Sum_probs=21.4
Q ss_pred HHHHHhcc-CCcEEEEcCCc-cccCcc----ccCHHHHHH
Q psy10342 237 FRERVHSL-LPFVFVVFFSS-GLGKLF----RFSSKTIFF 270 (285)
Q Consensus 237 ~~~~l~~~-~Pdlivv~aG~-plg~~~----~ls~~g~~~ 270 (285)
++.++... +||+|+++.|. .+. .. ..+.+-|.+
T Consensus 56 ~~~~l~~~~~pdlVii~~G~ND~~-~~~~~~~~~~~~~~~ 94 (198)
T cd01821 56 WDAILKLIKPGDYVLIQFGHNDQK-PKDPEYTEPYTTYKE 94 (198)
T ss_pred HHHHHhhCCCCCEEEEECCCCCCC-CCCCCCCCcHHHHHH
Confidence 45566655 79999999999 433 22 345555554
No 69
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=24.80 E-value=6.8e+02 Score=25.65 Aligned_cols=124 Identities=11% Similarity=0.059 Sum_probs=71.0
Q ss_pred CCCCccccc--hHHHHHHHHHhcCCcEEEEeccccCCcchhhhhccCCCEEEEEeeecCCCCCCCCCCCccccCCCCccc
Q psy10342 141 EASGFCYVN--DIVIAILELLKYHPRVLYIDIDVHHGDGVQDAFYLTDRVMTVSFHKYGGGFFPCSGDMYEIGAEGGRYY 218 (285)
Q Consensus 141 ~~~GFC~~N--nvaiAa~~l~~~~~rv~IvD~DvHhGnGtq~~f~~d~~V~~~SiH~~~~~fyP~~G~~~e~G~g~g~g~ 218 (285)
...++|-++ +-+=+|.......=-| -||+|.|-=|++..+|...|-=.-+|. -. ||+|+....+-.==+..
T Consensus 312 ~~~~~~~~~~~dd~e~a~~I~~d~IdI-LvDl~g~T~d~r~~v~A~RpAPiqvsw---lG--y~aT~g~p~~DY~I~D~- 384 (620)
T COG3914 312 AVEKWYPIGRMDDAEIANAIRTDGIDI-LVDLDGHTVDTRCQVFAHRPAPIQVSW---LG--YPATTGSPNMDYFISDP- 384 (620)
T ss_pred hhhheeccCCcCHHHHHHHHHhcCCeE-EEeccCceeccchhhhhcCCCceEEee---cc--cccccCCCcceEEeeCc-
Confidence 456788888 4444444444433344 489999999999999999985555553 23 88865422211100011
Q ss_pred EEEeeCCCCCChHHHHHHHHHHH-------------hc-------cCCcEEEEcCCccccCccccCHHHHHHHHHHHHhh
Q psy10342 219 SVNVRNRDLSPHSSHKRMFRERV-------------HS-------LLPFVFVVFFSSGLGKLFRFSSKTIFFCANFLAKR 278 (285)
Q Consensus 219 ~~Nvpl~~g~~d~~y~~~~~~~l-------------~~-------~~Pdlivv~aG~plg~~~~ls~~g~~~~~~~l~~~ 278 (285)
+- +|+. ...-|-+.+-.+- .+ ..+|.+|+-||- + .++.+++-+..-.++|++.
T Consensus 385 -y~--vPp~-ae~yysEkl~RLp~cy~p~d~~~~v~p~~sR~~lglp~~avVf~c~~--n-~~K~~pev~~~wmqIL~~v 457 (620)
T COG3914 385 -YT--VPPT-AEEYYSEKLWRLPQCYQPVDGFEPVTPPPSRAQLGLPEDAVVFCCFN--N-YFKITPEVFALWMQILSAV 457 (620)
T ss_pred -ee--cCch-HHHHHHHHHHhcccccCCCCCcccCCCCcchhhcCCCCCeEEEEecC--C-cccCCHHHHHHHHHHHHhC
Confidence 11 2332 2334544443211 11 156788888874 3 4567777777766766654
No 70
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=24.29 E-value=3.6e+02 Score=23.16 Aligned_cols=27 Identities=11% Similarity=-0.021 Sum_probs=21.5
Q ss_pred ChHHHHHHHHHHHhcc-CCcEEEEcCCc
Q psy10342 229 PHSSHKRMFRERVHSL-LPFVFVVFFSS 255 (285)
Q Consensus 229 ~d~~y~~~~~~~l~~~-~Pdlivv~aG~ 255 (285)
+.++...+++.+.+++ ++|.+|..+|.
T Consensus 63 ~~~~~~~~~~~~~~~~~~id~li~~ag~ 90 (257)
T PRK07067 63 RQDSIDRIVAAAVERFGGIDILFNNAAL 90 (257)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 4556677788877777 78999999997
No 71
>PF13050 DUF3911: Protein of unknown function (DUF3911)
Probab=23.97 E-value=29 Score=24.63 Aligned_cols=10 Identities=50% Similarity=1.062 Sum_probs=8.1
Q ss_pred CCccccchHH
Q psy10342 143 SGFCYVNDIV 152 (285)
Q Consensus 143 ~GFC~~Nnva 152 (285)
-|||-|||-+
T Consensus 26 kgfckf~nyv 35 (77)
T PF13050_consen 26 KGFCKFNNYV 35 (77)
T ss_pred ccccccCCEE
Confidence 4899999963
No 72
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=23.64 E-value=92 Score=26.03 Aligned_cols=27 Identities=11% Similarity=0.146 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHhccCCcEEEEcCCcc
Q psy10342 230 HSSHKRMFRERVHSLLPFVFVVFFSSG 256 (285)
Q Consensus 230 d~~y~~~~~~~l~~~~Pdlivv~aG~p 256 (285)
+++....+-..+++.+||+|+|..|+|
T Consensus 86 ~~~~~~~i~~~I~~~~pdiv~vglG~P 112 (172)
T PF03808_consen 86 DEEEEEAIINRINASGPDIVFVGLGAP 112 (172)
T ss_pred ChhhHHHHHHHHHHcCCCEEEEECCCC
Confidence 333444444567889999999999993
No 73
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=23.58 E-value=84 Score=29.49 Aligned_cols=23 Identities=26% Similarity=0.209 Sum_probs=17.6
Q ss_pred hcCCcEEEEeccccCCcchhhhhc
Q psy10342 160 KYHPRVLYIDIDVHHGDGVQDAFY 183 (285)
Q Consensus 160 ~~~~rv~IvD~DvHhGnGtq~~f~ 183 (285)
+..+||++||.|.++++ +..+|.
T Consensus 57 ~~g~rVllid~D~~~~~-~~~~~g 79 (329)
T cd02033 57 QQGKRVLLIGCDPKSDT-TSLLFG 79 (329)
T ss_pred HCCCcEEEEEeeecccc-cchhcc
Confidence 34689999999999764 555654
No 74
>cd05779 DNA_polB_epsilon_exo DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase epsilon, a family-B DNA polymerase. The 3'-5' exonuclease domain of eukaryotic DNA polymerase epsilon. DNA polymerase epsilon is a family-B DNA polymerase with a catalytic subunit that contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain. It is one of the three DNA-dependent type B DNA polymerases (alpha and delta are the other two) that have been identified as essential for nuclear DNA replication in eukaryotes. DNA polymerase epsilon plays a role in elongating the leading strand during DNA replication. It is also involved in DNA repair. The catalytic subunit contains both polymerase and 3'-5' exonuclease activities. The N-terminal exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. DNA polymerase epsilon also carries a unique
Probab=23.21 E-value=4.5e+02 Score=22.68 Aligned_cols=28 Identities=14% Similarity=0.318 Sum_probs=22.5
Q ss_pred CChHHHHHHHHHHHhccCCcEEEEcCCc
Q psy10342 228 SPHSSHKRMFRERVHSLLPFVFVVFFSS 255 (285)
Q Consensus 228 ~~d~~y~~~~~~~l~~~~Pdlivv~aG~ 255 (285)
.+..+.+..|.+.+...+||+|+=--|.
T Consensus 71 ~~E~~lL~~f~~~i~~~~Pd~i~gyN~~ 98 (204)
T cd05779 71 PDEKALLQRFFEHIREVKPHIIVTYNGD 98 (204)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEecCcc
Confidence 4567889999999999999998754443
No 75
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=23.20 E-value=89 Score=26.43 Aligned_cols=15 Identities=27% Similarity=0.284 Sum_probs=12.4
Q ss_pred cCCcEEEEeccccCC
Q psy10342 161 YHPRVLYIDIDVHHG 175 (285)
Q Consensus 161 ~~~rv~IvD~DvHhG 175 (285)
.++||++||+|....
T Consensus 45 ~G~rVllID~D~~~~ 59 (204)
T TIGR01007 45 AGYKTLLIDGDMRNS 59 (204)
T ss_pred CCCeEEEEeCCCCCh
Confidence 468999999998653
No 76
>PHA02524 43A DNA polymerase subunit A; Provisional
Probab=23.20 E-value=2.1e+02 Score=28.62 Aligned_cols=86 Identities=12% Similarity=0.035 Sum_probs=46.3
Q ss_pred cEEEEeccccCCcchhhhhccCCCEEEEEeeecC--C-CC-----CCCCCCCccccCCCC-cccEEEeeCCCCCChHHHH
Q psy10342 164 RVLYIDIDVHHGDGVQDAFYLTDRVMTVSFHKYG--G-GF-----FPCSGDMYEIGAEGG-RYYSVNVRNRDLSPHSSHK 234 (285)
Q Consensus 164 rv~IvD~DvHhGnGtq~~f~~d~~V~~~SiH~~~--~-~f-----yP~~G~~~e~G~g~g-~g~~~Nvpl~~g~~d~~y~ 234 (285)
||+.+|+-| .++|--+.-.-.-.+..||.-... . .| ++..+..+ .....- ....-+|-.-.-.++.+.|
T Consensus 107 ~~~~~DIEv-~~~~fp~~~~a~~~i~~i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~v~~f~sE~eLL 184 (498)
T PHA02524 107 VIDVVDIEV-TAPEFPEPKYAKYEIDMISHVRLHNGKKTYYIFDLVKDVGHWD-PKKSVLEKYILDNVVYMPFEDEVDLL 184 (498)
T ss_pred eEEEEEEEe-cCCCCCChhhcCCceEEEEeeecccCCccEEEEeccccccCCC-cccccccccccCCeEEEEeCCHHHHH
Confidence 899999999 555765555545567777753322 1 12 21122211 110000 0000011111223577889
Q ss_pred HHHHHHHhccCCcEEEE
Q psy10342 235 RMFRERVHSLLPFVFVV 251 (285)
Q Consensus 235 ~~~~~~l~~~~Pdlivv 251 (285)
..|...+.+..||+|+=
T Consensus 185 ~~F~~~i~~~DPDIItG 201 (498)
T PHA02524 185 LNYIQLWKANTPDLVFG 201 (498)
T ss_pred HHHHHHHHHhCCCEEEe
Confidence 99999999999999874
No 77
>cd00229 SGNH_hydrolase SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=23.04 E-value=1.8e+02 Score=22.46 Aligned_cols=40 Identities=13% Similarity=0.075 Sum_probs=24.1
Q ss_pred HHHHhccCCcEEEEcCCc-cccC----ccccCHHHHHHHHHHHHh
Q psy10342 238 RERVHSLLPFVFVVFFSS-GLGK----LFRFSSKTIFFCANFLAK 277 (285)
Q Consensus 238 ~~~l~~~~Pdlivv~aG~-plg~----~~~ls~~g~~~~~~~l~~ 277 (285)
...+...+||+||++.|. .... ......+.+.++.+.+.+
T Consensus 58 ~~~~~~~~~d~vil~~G~ND~~~~~~~~~~~~~~~~~~~i~~~~~ 102 (187)
T cd00229 58 RLALLKDKPDLVIIELGTNDLGRGGDTSIDEFKANLEELLDALRE 102 (187)
T ss_pred hhhhccCCCCEEEEEecccccccccccCHHHHHHHHHHHHHHHHH
Confidence 345566799999999998 4430 123344445555555554
No 78
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=23.01 E-value=1.3e+02 Score=24.40 Aligned_cols=39 Identities=13% Similarity=-0.066 Sum_probs=23.6
Q ss_pred HHHHHhccCCcEEEEcCCc-cccCcc---ccCHHH----HHHHHHHHH
Q psy10342 237 FRERVHSLLPFVFVVFFSS-GLGKLF---RFSSKT----IFFCANFLA 276 (285)
Q Consensus 237 ~~~~l~~~~Pdlivv~aG~-plg~~~---~ls~~g----~~~~~~~l~ 276 (285)
+..-+...+||+|+++.|. .++ .. ..+.+- +.++++.++
T Consensus 53 ~~~~~~~~~~d~v~l~~G~ND~~-~~~~~~~~~~~~~~~l~~~v~~~~ 99 (191)
T cd01834 53 RDRDVLPAKPDVVSIMFGINDSF-RGFDDPVGLEKFKTNLRRLIDRLK 99 (191)
T ss_pred hhcccccCCCCEEEEEeecchHh-hcccccccHHHHHHHHHHHHHHHH
Confidence 3334455689999999999 444 22 345544 445555553
No 79
>KOG3838|consensus
Probab=22.44 E-value=52 Score=31.71 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=18.9
Q ss_pred cCCcchhhhhccC------------------CCEEEEEeee
Q psy10342 173 HHGDGVQDAFYLT------------------DRVMTVSFHK 195 (285)
Q Consensus 173 HhGnGtq~~f~~d------------------~~V~~~SiH~ 195 (285)
|||||++++..+. .+||+++||.
T Consensus 167 h~~DGasQ~LssCqrDFRNkPyPvRarItY~~nvLtv~inn 207 (497)
T KOG3838|consen 167 HPGDGASQGLSSCQRDFRNKPYPVRARITYYGNVLTVMINN 207 (497)
T ss_pred CCCccHHHHHHHhhHHhccCCCCceEEEEEeccEEEEEEcC
Confidence 8999999987653 5699999975
No 80
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=22.02 E-value=1e+02 Score=28.39 Aligned_cols=16 Identities=31% Similarity=0.414 Sum_probs=12.8
Q ss_pred hcCCcEEEEeccccCC
Q psy10342 160 KYHPRVLYIDIDVHHG 175 (285)
Q Consensus 160 ~~~~rv~IvD~DvHhG 175 (285)
+..+||++||.|...|
T Consensus 120 ~~g~~VlLvD~D~~~~ 135 (322)
T TIGR03815 120 RHGLRTLLVDADPWGG 135 (322)
T ss_pred hcCCCEEEEecCCCCC
Confidence 3468999999997654
No 81
>cd00525 AE_Prim_S_like AE_Prim_S_like: primase domain similar to that found in the small subunit of archaeal and eukaryotic (A/E) DNA primases. The replication machineries of A/Es are distinct from that of bacteria. Primases are DNA-dependent RNA polymerases which synthesis the short RNA primers required for DNA replication. In eukaryotes, this small catalytically active primase subunit (p50) and a larger primase subunit (p60), referred to jointly as the core primase, associate with the B subunit and the DNA polymerase alpha subunit in a complex, called Pol alpha-pri. In addition to its catalytic role in replication, eukaryotic DNA primase may play a role in coupling replication to DNA damage repair and in checkpoint control during S phase. Pfu41 and Pfu46 comprise the primase complex of the archaea Pyrococcus furiosus; these proteins have sequence identity to the eukaryotic p50 and p60 primase proteins respectively. Pfu41 preferentially uses dNTPs as substrate. Pfu46 regulates the pri
Probab=21.98 E-value=65 Score=25.32 Aligned_cols=15 Identities=33% Similarity=0.510 Sum_probs=12.7
Q ss_pred CcEEEEeccccCCcc
Q psy10342 163 PRVLYIDIDVHHGDG 177 (285)
Q Consensus 163 ~rv~IvD~DvHhGnG 177 (285)
...++||+|.+++++
T Consensus 54 ~~~iv~DiD~~~~~~ 68 (136)
T cd00525 54 PDLLVFDLDPDDYDC 68 (136)
T ss_pred CCEEEEECCCCCCCC
Confidence 589999999999744
No 82
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=21.97 E-value=5.3e+02 Score=22.37 Aligned_cols=44 Identities=7% Similarity=0.022 Sum_probs=29.9
Q ss_pred CChHHHHHHHHHHHhcc-CCcEEEEcCCc-cc----cCccccCHHHHHHH
Q psy10342 228 SPHSSHKRMFRERVHSL-LPFVFVVFFSS-GL----GKLFRFSSKTIFFC 271 (285)
Q Consensus 228 ~~d~~y~~~~~~~l~~~-~Pdlivv~aG~-pl----g~~~~ls~~g~~~~ 271 (285)
++.++..++++.+.+++ +.|++|..+|. +. +.-...+.+++.+.
T Consensus 70 ~~~~~v~~~~~~~~~~~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~ 119 (258)
T PRK07533 70 REPGQLEAVFARIAEEWGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALA 119 (258)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEEcCccCCcccccCCcccCCHHHHHHH
Confidence 34567778888888887 88999999998 31 21234566665543
No 83
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=21.83 E-value=70 Score=29.22 Aligned_cols=18 Identities=28% Similarity=0.325 Sum_probs=13.6
Q ss_pred hcCCcEEEEeccccCCcch
Q psy10342 160 KYHPRVLYIDIDVHHGDGV 178 (285)
Q Consensus 160 ~~~~rv~IvD~DvHhGnGt 178 (285)
+.++||++||+|.. ||=|
T Consensus 26 ~~G~rVLlID~DpQ-~n~t 43 (290)
T CHL00072 26 RRGKKVLQIGCDPK-HDST 43 (290)
T ss_pred HCCCeEEEEeccCC-Cccc
Confidence 44689999999986 4433
No 84
>PRK11702 hypothetical protein; Provisional
Probab=21.79 E-value=4e+02 Score=20.89 Aligned_cols=63 Identities=13% Similarity=0.019 Sum_probs=42.6
Q ss_pred CcccEEEeeCCCCCChHHHHHHHHHHHhcc-CCcEEEEcCCc---------cccCccccCHHHHHHHHHHHHhh
Q psy10342 215 GRYYSVNVRNRDLSPHSSHKRMFRERVHSL-LPFVFVVFFSS---------GLGKLFRFSSKTIFFCANFLAKR 278 (285)
Q Consensus 215 g~g~~~Nvpl~~g~~d~~y~~~~~~~l~~~-~Pdlivv~aG~---------plg~~~~ls~~g~~~~~~~l~~~ 278 (285)
-.|+.++.-++.++++++|-..++..|.++ +|.-+-+.-|- +-. .-+.|.+.=..+..+|.+.
T Consensus 20 eLGF~v~~~~~~~~~~e~~D~~vD~fIde~Ie~ngL~f~G~G~~~~eG~vc~~~-~gs~tEe~R~~V~~WL~~r 92 (108)
T PRK11702 20 ELGFSVNWRFPEGTSEEQIDATVDAFIDEVIEPNGLAFDGSGYLAWEGLICLQK-IGKCTEEHRALVKKWLEGR 92 (108)
T ss_pred hheeEEEEEECCCCCHHHHHHHHHHHHHHHHhcCCceecCCcceeEEEEEeecc-cCCCCHHHHHHHHHHHHhC
Confidence 357899999999999999999888888654 77755553321 111 2236666666666666653
No 85
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=21.68 E-value=1.3e+02 Score=24.47 Aligned_cols=30 Identities=10% Similarity=-0.075 Sum_probs=23.0
Q ss_pred CCCChHHHHHHHHHHHhccCCcEEEEcCCc
Q psy10342 226 DLSPHSSHKRMFRERVHSLLPFVFVVFFSS 255 (285)
Q Consensus 226 ~g~~d~~y~~~~~~~l~~~~Pdlivv~aG~ 255 (285)
....-+.|..++.+++.+.+|++|++....
T Consensus 71 ~~~~~~~~a~~l~~~~~~~~~~lVl~~~t~ 100 (164)
T PF01012_consen 71 AEYDPEAYADALAELIKEEGPDLVLFGSTS 100 (164)
T ss_dssp TTC-HHHHHHHHHHHHHHHT-SEEEEESSH
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEcCcC
Confidence 344567799999999999999999997653
No 86
>TIGR00034 aroFGH phospho-2-dehydro-3-deoxyheptonate aldolase.
Probab=21.56 E-value=5.1e+02 Score=24.56 Aligned_cols=29 Identities=34% Similarity=0.554 Sum_probs=18.7
Q ss_pred chHHHHHHHHHhcC--CcEEEEeccccCCcchhh
Q psy10342 149 NDIVIAILELLKYH--PRVLYIDIDVHHGDGVQD 180 (285)
Q Consensus 149 NnvaiAa~~l~~~~--~rv~IvD~DvHhGnGtq~ 180 (285)
.|++-+...+.+.. .||+ | |.=||||..+
T Consensus 239 ~di~~~~~~l~~~~lp~~vm-V--D~SH~ns~k~ 269 (344)
T TIGR00034 239 ADVAAAKKQLEKAGLPPHLM-I--DFSHGNSNKD 269 (344)
T ss_pred HHHHHHHHHHHHcCCCCeEE-E--eCCCcccccc
Confidence 57777766666544 3454 3 6789999643
No 87
>PF11202 PRTase_1: Phosphoribosyl transferase (PRTase); InterPro: IPR011215 This is a family of uncharacterised bacterial proteins.
Probab=21.54 E-value=1.2e+02 Score=27.52 Aligned_cols=40 Identities=15% Similarity=0.183 Sum_probs=26.5
Q ss_pred cEEEeeCCCCCChHHHHHHHHHHHhc-------------------cCCcEEEEc---CCcccc
Q psy10342 218 YSVNVRNRDLSPHSSHKRMFRERVHS-------------------LLPFVFVVF---FSSGLG 258 (285)
Q Consensus 218 ~~~Nvpl~~g~~d~~y~~~~~~~l~~-------------------~~Pdlivv~---aG~plg 258 (285)
|+=.+|... ..+++|+++|.+++.+ ...++++|| ||.|+|
T Consensus 40 YSEmL~~E~-~Ps~~y~~lf~~aL~~~~~rlA~~v~~la~~i~~~~g~~~vLVSLaRAGtPiG 101 (257)
T PF11202_consen 40 YSEMLPIEY-QPSAEYMDLFHQALAQNAQRLARAVGVLAELIIARRGQPIVLVSLARAGTPIG 101 (257)
T ss_pred ccccCCCCC-CCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCeEEEEeeccCCcHH
Confidence 444455533 4578899988865422 257899998 677877
No 88
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=21.12 E-value=1.2e+02 Score=22.39 Aligned_cols=17 Identities=41% Similarity=0.577 Sum_probs=13.4
Q ss_pred HHHhcCCcEEEEecccc
Q psy10342 157 ELLKYHPRVLYIDIDVH 173 (285)
Q Consensus 157 ~l~~~~~rv~IvD~DvH 173 (285)
++.+..+||+++|.|.+
T Consensus 23 ~~~~~~~~vl~~d~d~~ 39 (104)
T cd02042 23 ALARRGKRVLLIDLDPQ 39 (104)
T ss_pred HHHhCCCcEEEEeCCCC
Confidence 33445789999999988
No 89
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=20.65 E-value=80 Score=27.83 Aligned_cols=17 Identities=18% Similarity=0.124 Sum_probs=13.0
Q ss_pred HhcCCcEEEEeccccCCc
Q psy10342 159 LKYHPRVLYIDIDVHHGD 176 (285)
Q Consensus 159 ~~~~~rv~IvD~DvHhGn 176 (285)
.++++||++||.|. +|+
T Consensus 27 a~~G~~VlliD~Dp-Q~s 43 (231)
T PRK13849 27 ASDGKRVALFEADE-NRP 43 (231)
T ss_pred HhCCCcEEEEeCCC-CCC
Confidence 34568999999997 544
No 90
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=20.61 E-value=7.8e+02 Score=23.85 Aligned_cols=26 Identities=31% Similarity=0.243 Sum_probs=18.9
Q ss_pred HHHHHHhcCCcEEEEeccccCCcchhhhhc
Q psy10342 154 AILELLKYHPRVLYIDIDVHHGDGVQDAFY 183 (285)
Q Consensus 154 Aa~~l~~~~~rv~IvD~DvHhGnGtq~~f~ 183 (285)
-+..+.+++.||+|||.|+ |-.+++-
T Consensus 93 LaN~~l~rG~~v~iiDaDv----GQ~ei~p 118 (398)
T COG1341 93 LANKLLARGRKVAIIDADV----GQSEIGP 118 (398)
T ss_pred HHHHHhhcCceEEEEeCCC----CCcccCC
Confidence 3344555678899999999 7667664
No 91
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=20.49 E-value=2.7e+02 Score=26.30 Aligned_cols=48 Identities=15% Similarity=0.074 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHhcc---CCcEEEEcCCccccCccccCHHHHHHHHHHHHhhc
Q psy10342 230 HSSHKRMFRERVHSL---LPFVFVVFFSSGLGKLFRFSSKTIFFCANFLAKRK 279 (285)
Q Consensus 230 d~~y~~~~~~~l~~~---~Pdlivv~aG~plg~~~~ls~~g~~~~~~~l~~~~ 279 (285)
.+++..+|.++++.. ++|+||+ ||= +=+.-+-+.+......+.++.++
T Consensus 22 ~~d~~~~f~~~l~~a~~~~vD~vli-AGD-lFd~~~Ps~~a~~~~~~~l~~l~ 72 (390)
T COG0420 22 LEDQKKAFDELLEIAKEEKVDFVLI-AGD-LFDTNNPSPRALKLFLEALRRLK 72 (390)
T ss_pred hHHHHHHHHHHHHHHHHccCCEEEE-ccc-cccCCCCCHHHHHHHHHHHHHhc
Confidence 466777777766554 9999998 774 21134566666666666666655
No 92
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=20.44 E-value=1.1e+02 Score=29.09 Aligned_cols=19 Identities=32% Similarity=0.221 Sum_probs=14.3
Q ss_pred hcCCcEEEEeccccCCcchh
Q psy10342 160 KYHPRVLYIDIDVHHGDGVQ 179 (285)
Q Consensus 160 ~~~~rv~IvD~DvHhGnGtq 179 (285)
+.++||++||+|. +||=+.
T Consensus 131 ~~G~rVLlID~Dp-Q~~ls~ 149 (387)
T TIGR03453 131 LRGYRVLAIDLDP-QASLSA 149 (387)
T ss_pred hcCCCEEEEecCC-CCCHHH
Confidence 3468999999997 676443
No 93
>PF01830 Peptidase_C7: Peptidase C7 family; InterPro: IPR002704 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C7 (clan CA). These are found in fungi and viruses (Hypoviridae). They are involved in transmissible hypovirulence and may indicate the possible origins of hypovirulence-associated dsRNAs [].; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis
Probab=20.25 E-value=31 Score=29.88 Aligned_cols=19 Identities=26% Similarity=0.482 Sum_probs=15.5
Q ss_pred CCCCCCccccchHHHHHHH
Q psy10342 139 KSEASGFCYVNDIVIAILE 157 (285)
Q Consensus 139 ~~~~~GFC~~NnvaiAa~~ 157 (285)
.+.++||||+|-+.=-+++
T Consensus 155 aqFGqGYCyLsai~~~aRW 173 (243)
T PF01830_consen 155 AQFGQGYCYLSAIVDSARW 173 (243)
T ss_pred HHhCCceeeeehhchhhhh
Confidence 4689999999988776665
No 94
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=20.09 E-value=1.2e+02 Score=27.13 Aligned_cols=16 Identities=13% Similarity=0.231 Sum_probs=12.7
Q ss_pred cCCcEEEEeccccCCc
Q psy10342 161 YHPRVLYIDIDVHHGD 176 (285)
Q Consensus 161 ~~~rv~IvD~DvHhGn 176 (285)
.++||++||+|....+
T Consensus 28 ~G~rVLlID~Dpq~~~ 43 (274)
T PRK13235 28 MGKKVMVVGCDPKADS 43 (274)
T ss_pred CCCcEEEEecCCcccc
Confidence 4689999999985543
Done!