RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10342
(285 letters)
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase;
HET: LLX NHE; 2.05A {Homo sapiens}
Length = 367
Score = 346 bits (890), Expect = e-120
Identities = 135/221 (61%), Positives = 181/221 (81%), Gaps = 1/221 (0%)
Query: 2 SNKTVSYFYNPDVGNFHYGAKHPMKPHRLSVINSLILGYGLHKKMQIYRPYKASYHDMCR 61
+ K V Y+Y+ D+GN++YG HPMKPHR+ + ++L+L YGL++KM+IYRP+KA+ +M +
Sbjct: 1 AKKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATAEEMTK 60
Query: 62 FHSAEYIDFLHTVSPDKIHEHTKFLCQFASGEDCPIFHGLYDFCSMYTGASLEGAIQLNN 121
+HS EYI FL ++ PD + E++K + +F GEDCP+F GL++FC + TG S+ GA++LN
Sbjct: 61 YHSDEYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAGAVKLNR 120
Query: 122 NCCDIAINWSGGLHHAKKSEASGFCYVNDIVIAILELLKYHPRVLYIDIDVHHGDGVQDA 181
D+A+NW+GGLHHAKKSEASGFCYVNDIV+AILELLKYH RVLYIDID+HHGDGV++A
Sbjct: 121 QQTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEEA 180
Query: 182 FYLTDRVMTVSFHKYGGGFFPCSGDMYEIGAEGGRYYSVNV 222
FY TDRVMTVSFHKY G +FP +GD+ +IGA G+YY+VN
Sbjct: 181 FYTTDRVMTVSFHKY-GEYFPGTGDLRDIGAGKGKYYAVNF 220
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme,
arginase fold, HDAC8, histon deacetylase, hydroxamate
inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens}
PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A*
2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A*
1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A*
Length = 388
Score = 343 bits (883), Expect = e-118
Identities = 98/221 (44%), Positives = 137/221 (61%), Gaps = 3/221 (1%)
Query: 2 SNKTVSYFYNPDVGNFHYGAKHPMKPHRLSVINSLILGYGLHKKMQIYRPYKASYHDMCR 61
+ Y Y+P+ + P R S+++SLI Y LHK+M+I +P AS +M
Sbjct: 12 QSLVPVYIYSPEYVSMCDS--LAKIPKRASMVHSLIEAYALHKQMRIVKPKVASMEEMAT 69
Query: 62 FHSAEYIDFLHTVSPDKIHEHTKFLCQFASGEDCPIFHGLYDFCSMYTGASLEGAIQLNN 121
FH+ Y+ L VS + +H ++ G CP G++D+ + GA++ A L +
Sbjct: 70 FHTDAYLQHLQKVSQEGDDDHPDS-IEYGLGYLCPATEGIFDYAAAIGGATITAAQCLID 128
Query: 122 NCCDIAINWSGGLHHAKKSEASGFCYVNDIVIAILELLKYHPRVLYIDIDVHHGDGVQDA 181
C +AINWSGG HHAKK EASGFCY+ND V+ IL L + R+LY+D+D+HHGDGV+DA
Sbjct: 129 GMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGILRLRRKFERILYVDLDLHHGDGVEDA 188
Query: 182 FYLTDRVMTVSFHKYGGGFFPCSGDMYEIGAEGGRYYSVNV 222
F T +VMTVS HK+ GFFP +GD+ ++G GRYYSVNV
Sbjct: 189 FSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNV 229
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A
{Homo sapiens}
Length = 376
Score = 338 bits (870), Expect = e-116
Identities = 166/222 (74%), Positives = 191/222 (86%), Gaps = 1/222 (0%)
Query: 1 MSNKTVSYFYNPDVGNFHYGAKHPMKPHRLSVINSLILGYGLHKKMQIYRPYKASYHDMC 60
M+ KTV+YFY+PDVGNFHYGA HPMKPHRL++ +SL+L YGL+KKM +++PY+AS HDMC
Sbjct: 1 MA-KTVAYFYDPDVGNFHYGAGHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMC 59
Query: 61 RFHSAEYIDFLHTVSPDKIHEHTKFLCQFASGEDCPIFHGLYDFCSMYTGASLEGAIQLN 120
RFHS +YIDFL VSP + TK L F G+DCP+F GL++FCS YTGASL+GA QLN
Sbjct: 60 RFHSEDYIDFLQRVSPTNMQGFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLN 119
Query: 121 NNCCDIAINWSGGLHHAKKSEASGFCYVNDIVIAILELLKYHPRVLYIDIDVHHGDGVQD 180
N CDIAINW+GGLHHAKK EASGFCYVNDIVI ILELLKYHPRVLYIDID+HHGDGVQ+
Sbjct: 120 NKICDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLKYHPRVLYIDIDIHHGDGVQE 179
Query: 181 AFYLTDRVMTVSFHKYGGGFFPCSGDMYEIGAEGGRYYSVNV 222
AFYLTDRVMTVSFHKYG FFP +GDMYE+GAE GRYY +NV
Sbjct: 180 AFYLTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYCLNV 221
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta
fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2
PDB: 1c3r_A* 1c3s_A*
Length = 375
Score = 330 bits (848), Expect = e-113
Identities = 69/244 (28%), Positives = 119/244 (48%), Gaps = 4/244 (1%)
Query: 4 KTVSYFYNPDVGNFHYGAKHPMKPHRLSVINSLILGYGLHKKMQIYRPYKASYHDMCRFH 63
K V D G + Y HP+K R+S++ L + ++ + A+ ++ FH
Sbjct: 2 KKVKLIGTLDYGKYRYPKNHPLKIPRVSLLLRFKDAMNLIDEKELIKSRPATKEELLLFH 61
Query: 64 SAEYIDFLHTVSPDKIHEHTKFLCQFASGEDCPIFHGLYDFCSMYTGASLEGAIQLNNNC 123
+ +YI+ L + G + P+ + ++ S+ TG++++ +
Sbjct: 62 TEDYINTLMEAERCQCVPKGAREKYNIGGYENPVSYAMFTGSSLATGSTVQAIEEFLK-- 119
Query: 124 CDIAINWSGGLHHAKKSEASGFCYVNDIVIAILELLK-YHPRVLYIDIDVHHGDGVQDAF 182
++A N +GG+HHA KS A+GFCY+N+ + I L K R+LYID+D HH DGVQ+AF
Sbjct: 120 GNVAFNPAGGMHHAFKSRANGFCYINNPAVGIEYLRKKGFKRILYIDLDAHHCDGVQEAF 179
Query: 183 YLTDRVMTVSFHKYGGGFFPC-SGDMYEIGAEGGRYYSVNVRNRDLSPHSSHKRMFRERV 241
Y TD+V +S H+ FP G + EIG G+ Y++N+ + + +
Sbjct: 180 YDTDQVFVLSLHQSPEYAFPFEKGFLEEIGEGKGKGYNLNIPLPKGLNDNEFLFALEKSL 239
Query: 242 HSLL 245
+
Sbjct: 240 EIVK 243
>2pqp_A HD7A, histone deacetylase 7A; HDAC, structural genomics, structural
genomics consortium, SGC; HET: TSN; 1.80A {Homo sapiens}
PDB: 2pqo_A* 2nvr_A 3c0y_A 3c0z_A 3c10_A* 2vqm_A*
2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A*
Length = 421
Score = 136 bits (344), Expect = 2e-37
Identities = 68/290 (23%), Positives = 107/290 (36%), Gaps = 43/290 (14%)
Query: 3 NKTVSYFYNPD----VGNFHYGAKHPMKPHRLSVINSLILGYGLHKKMQIYRPYKASYHD 58
T Y+ + ++HP R+ I S + GL + + R KAS +
Sbjct: 35 PFTTGLIYDSVMLKHQCSCGDNSRHPEHAGRIQSIWSRLQERGLRSQCECLRGRKASLEE 94
Query: 59 MCRFHSAEYIDFLHTVSPDKIHEHTKFLCQFASGED---CPIFHGLYDFCSMYTGA-SLE 114
+ HS ++ T ++ L + P D +++ S
Sbjct: 95 LQSVHSERHVLLYGTNPLSRLKLDNGKLAGLLAQRMFVMLPCGGVGVDTDTIWNELHSSN 154
Query: 115 -------GAIQLNNNCCDIAINWSGGL-----------HHAKKSEASGFCYVNDIVIAIL 156
L S L HHA S A GFC+ N + IA
Sbjct: 155 AARWAAGSVTDL----AFKVA--SRELKNGFAVVRPPGHHADHSTAMGFCFFNSVAIACR 208
Query: 157 ELLKYHP--RVLYIDIDVHHGDGVQDAFYLTDRVMTVSFHKY-GGGFFPCSGDMYEIGAE 213
+L + ++L +D DVHHG+G Q FY V+ +S H++ G FFP SG + E+GA
Sbjct: 209 QLQQQSKASKILIVDWDVHHGNGTQQTFYQDPSVLYISLHRHDDGNFFPGSGAVDEVGAG 268
Query: 214 GGRYYSVNV-RNRDLSPHSSHKRMFRERV-HSLLPFVF-----VVFFSSG 256
G ++VNV L P + ++P +V S+G
Sbjct: 269 SGEGFNVNVAWAGGLDPPMGDPE-YLAAFRIVVMPIAREFSPDLVLVSAG 317
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A
{Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A*
2vcg_A*
Length = 369
Score = 128 bits (323), Expect = 7e-35
Identities = 53/223 (23%), Positives = 85/223 (38%), Gaps = 19/223 (8%)
Query: 7 SYFYNPDVGNFHYGAKHPMKPHRLSVINSLILGYGLHKKMQIYRPYKASYHDMCRFHSAE 66
S + H P + L+ G + + A+ D+ R HSA
Sbjct: 20 SLAAANLTARMQPISHHLAHPDTKRRFHELVCASGQIEHLTPIAAVAATDADILRAHSAA 79
Query: 67 YIDFLHTVSPDKIHEHTKFLCQFASGEDCPIFHGLYDFCSMYTGASLEGAIQLNNNCCDI 126
+++ + VS T + +G + + G ++E ++
Sbjct: 80 HLENMKRVSNLPTGGDT-------GDGITMMGNGGLEIARLSAGGAVELTRRVATGELSA 132
Query: 127 AINWSGGL-----HHAKKSEASGFCYVNDIVIAILELLKYHP--RVLYIDIDVHHGDGVQ 179
L HHA + A GFC N+ +A RV +D DVHHG+G Q
Sbjct: 133 GY----ALVNPPGHHAPHNAAMGFCIFNNTSVAAGYARAVLGMERVAILDWDVHHGNGTQ 188
Query: 180 DAFYLTDRVMTVSFHKYGGGFFPCSGDMYEIGAEGGRYYSVNV 222
D ++ V+T+S H++ F P SG E GA G Y++NV
Sbjct: 189 DIWWNDPSVLTISLHQH-LCFPPDSGYSTERGAGNGHGYNINV 230
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A
{Burkholderia pseudomallei 1710B}
Length = 362
Score = 127 bits (321), Expect = 1e-34
Identities = 64/264 (24%), Positives = 94/264 (35%), Gaps = 38/264 (14%)
Query: 23 HPMKPHRLSVINSLILGYGLHKKMQIYRPYKASYHDMCRFHSAEYIDFLHTVSPDKIHEH 82
P R + + + G + P + H Y+ FL TV +
Sbjct: 47 PQEVPERAARLVAAAFAMGF----PVREPDDFGIAPIAAVHDTHYLRFLETVHREWKAMP 102
Query: 83 TKFLCQFASGEDCPIFHGLYDFCSMYTGASLEGAIQLNNNCCDIAINWSGGL-------- 134
+ + S + L + +G+ + + A WS
Sbjct: 103 EDWGDEAMSNIFVREPNALRGVLAQAARHLADGSCPVGEHTWRAAY-WSAQSALAAAAAV 161
Query: 135 ---------------HHAKKSEASGFCYVNDIVIAILELLKYHPRVLYIDIDVHHGDGVQ 179
HHA+ A GFCY+N+ IA L H RV +D D+HHG G+Q
Sbjct: 162 RDGAPAAYALCRPPGHHARVDAAGGFCYLNNAAIAAQALRARHARVAVLDTDMHHGQGIQ 221
Query: 180 DAFYLTDRVMTVSFHKYGGGFFP-CSGDMYEIGAEGGRYYSVNVRNRDLSPHSSHKRMFR 238
+ FY V+ VS H F+P +G E GA G Y+VN+ + SS F
Sbjct: 222 EIFYARRDVLYVSIHGDPTNFYPAVAGFDDERGAGEGLGYNVNL---PMPHGSSE-AAFF 277
Query: 239 ERVHSLLPFV--F---VVFFSSGL 257
ERV L + F + S G
Sbjct: 278 ERVDDALRELRRFAPDALVLSLGF 301
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold,
deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N;
2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A*
Length = 341
Score = 115 bits (290), Expect = 2e-30
Identities = 50/264 (18%), Positives = 83/264 (31%), Gaps = 37/264 (14%)
Query: 23 HPMKPHRLSVINSLILGYGLHKKMQIYRPYKASYHDMCRFHSAEYIDFLHTVSPDKIHEH 82
P R I + + G + P + + + H A Y++FL T
Sbjct: 26 PFEAPFRAEWILAAVKEAGFD---DVVAPARHGLETVLKVHDAGYLNFLETAWDRWKAAG 82
Query: 83 TKFLCQFASGEDCPIFHGLYDFCSMYTG-ASLEGAIQLNNNCCDIAINWSGGL------- 134
K S + G ++ + A++
Sbjct: 83 YKGEAIATSFPVRRTSPRIPTDIEGQIGYYCNAAETAISPGTWEAALSSMASAIDGADLI 142
Query: 135 ---------------HHAKKSEASGFCYVNDIVIAILELL-KYHPRVLYIDIDVHHGDGV 178
HHA G+C++N+ +A LL K ++ +D+D HHG+G
Sbjct: 143 AAGHKAAFSLCRPPGHHAGIDMFGGYCFINNAAVAAQRLLDKGAKKIAILDVDFHHGNGT 202
Query: 179 QDAFYLTDRVMTVSFHKYGGGFFP-CSGDMYEIGAEGGRYYSVNVRNRDLSPHSSHKRMF 237
QD FY V S H FP G E G G + N + + + ++
Sbjct: 203 QDIFYERGDVFFASLHGDPAEAFPHFLGYAEETGKGAGAGTTANY---PMGRGTPY-SVW 258
Query: 238 RERVHSLLPFV--F---VVFFSSG 256
E + L + F + S G
Sbjct: 259 GEALTDSLKRIAAFGAEAIVVSLG 282
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.3 bits (99), Expect = 1e-04
Identities = 45/278 (16%), Positives = 83/278 (29%), Gaps = 82/278 (29%)
Query: 48 IYRPYKASYHDMCRFHSAEYIDFL-HTVSPDKIHEHTKFLCQFASG-EDCPIFHGLYDFC 105
+Y+ Y D+ +F + + + T+ +K+ + ++ + P
Sbjct: 176 LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTP---DKDYLL 232
Query: 106 SMYTGAS--LEGAIQLNNNCCDIAINWSGGLHHAK-KSEASG-FCYVNDIVIAILELLKY 161
S S L G IQL + G + +S G + +V A+
Sbjct: 233 S--IPISCPLIGVIQL---AHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVA----- 282
Query: 162 HPRVLYIDIDVHHGDGVQDAFYLTDRVMTVSFHKYGGGF-----FPCSG-------DMYE 209
+ D + F + +TV F G +P + D E
Sbjct: 283 ----------IAETDSWESFFVSVRKAITVLFFI---GVRCYEAYPNTSLPPSILEDSLE 329
Query: 210 IGAEGGRYYSVNVRNRDLSPHSSHKRMFR--------ERVH-SLL--PFVFVVFFSSG-- 256
EG +++ +L+ + + ++V SL+ VV SG
Sbjct: 330 NN-EGVPSPMLSI--SNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVV---SGPP 383
Query: 257 -----LGKLFR--------------FSSKTIFFCANFL 275
L R FS + + F FL
Sbjct: 384 QSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFL 421
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.2 bits (80), Expect = 0.023
Identities = 26/123 (21%), Positives = 44/123 (35%), Gaps = 44/123 (35%)
Query: 7 SYFYNPDVGNFHYGAKHPMKP----HRLSVINSLILGYG-LHKK---------------- 45
YFY+ H G H +K R+++ + L + L +K
Sbjct: 471 QYFYS------HIG--HHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN 522
Query: 46 ----MQIYRPY----KASYHDMCRFHSAEYIDFLHTVSPDKIH-EHTKFLCQFA-SGEDC 95
++ Y+PY Y + +DFL + + I ++T L + A ED
Sbjct: 523 TLQQLKFYKPYICDNDPKYERLVN----AILDFLPKIEENLICSKYTDLL-RIALMAEDE 577
Query: 96 PIF 98
IF
Sbjct: 578 AIF 580
Score = 35.2 bits (80), Expect = 0.028
Identities = 45/296 (15%), Positives = 79/296 (26%), Gaps = 69/296 (23%)
Query: 3 NKTVSYFY----NPDVG----NFHYGAKHPMKPHRL--SVINSLILGYGLHKKMQIYR-- 50
+ V F + + P R+ + L + K + R
Sbjct: 76 EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ 135
Query: 51 PYKASYHDMCRFHSAEYIDFLH-------TVSPDKIHEHTKFLCQFASGEDCPIF---HG 100
PY + A+ + + T + K C+ D IF
Sbjct: 136 PYLKLRQALLELRPAKNV-LIDGVLGSGKTWVALDVCLSYKVQCKM----DFKIFWLNLK 190
Query: 101 LYDFCSMYTGASLEGAIQLNNNCCDIAINWSGGLHHAKKSEASGFCYVNDIVIAILELLK 160
+ LE L I NW+ H+ + ++ I + LLK
Sbjct: 191 NCN----SPETVLE---MLQKLLYQIDPNWTSRSDHSSNIKLR----IHSIQAELRRLLK 239
Query: 161 Y--HPRVLYI-DIDVHHGDGVQDAF------YLTDRVMTVSFHKYGGGFFPCSGDMYEIG 211
+ L + +V + +AF LT R V+ S D + +
Sbjct: 240 SKPYENCLLVLL-NVQNAK-AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 212 ---AEGGRYYS--VNVRNRDLSPHSSHKRMFRERVHSLLPFVFVVFFSSGLGKLFR 262
E ++ R +DL V + P S + + R
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDL----------PREVLTTNPRRL-----SIIAESIR 338
>3t6c_A RSPA, putative MAND family dehydratase; enolase, mannonate
dehydratase related protein, enzyme funct intitiative,
lyase, hydro-lyases; HET: GCO; 1.60A {Pantoea ananatis}
PDB: 3tw9_A 3twa_A 3twb_A*
Length = 440
Score = 28.8 bits (65), Expect = 2.1
Identities = 21/115 (18%), Positives = 39/115 (33%), Gaps = 30/115 (26%)
Query: 57 HDM-CRFHSAEYIDFLHTVSPDKI--------HEHTKFLCQFASGEDCPI-----FHGLY 102
HD R I + P ++ E+T++L PI F +
Sbjct: 245 HDAHERITPINAIHMAKALEPYQLFFLEDPVAPENTEWLKMLRQQSSTPIAMGELFVNVN 304
Query: 103 DFCSMYTGASLEGAIQLNNNCCDIA---INWSGGLHHAKKSEASGFCYVNDIVIA 154
++ + ++N D I+ GG+ AKK + + +N + A
Sbjct: 305 EWKPL-----------IDNKLIDYIRCHISSIGGITPAKK--IAIYSELNGVRTA 346
>1bk8_A AH-AMP1, antimicrobial protein 1; plant defensin,
cysteine-stabilized ALFA/ beta motif; NMR {Aesculus
hippocastanum} SCOP: g.3.7.5
Length = 50
Score = 25.8 bits (56), Expect = 3.0
Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 3/49 (6%)
Query: 104 FCSMYTGASLEGAIQLNNNCCDIAINWSGGLH---HAKKSEASGFCYVN 149
C+ + G +C +W H H +++ FCY N
Sbjct: 1 LCNERPSQTWSGNCGNTAHCDKQCQDWEKASHGACHKRENHWKCFCYFN 49
>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell
cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1
c.55.4.2 d.79.3.2
Length = 347
Score = 28.2 bits (62), Expect = 3.6
Identities = 10/103 (9%), Positives = 26/103 (25%), Gaps = 6/103 (5%)
Query: 183 YLTDRVMTVSFHKYGGGFFPCSGDMYEIGAEGGRYYSVNV-RNRDLSPHSSHKRMFRERV 241
+ +V + F + + G++ S+ V + ++S + +
Sbjct: 62 TIRLKVEKIEFQDFDNRLRILGTVIEGPEDTKGKHQSITVTVDSEISITKEWDDQHIDLL 121
Query: 242 HSLL-----PFVFVVFFSSGLGKLFRFSSKTIFFCANFLAKRK 279
V ++F I + R
Sbjct: 122 KEATDEKYVTVYTAVAMDEDEAQIFLIHPYGIQQVGTVYSGRS 164
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
ligase; 2.61A {Anaerococcus prevotii}
Length = 403
Score = 27.3 bits (61), Expect = 7.0
Identities = 6/41 (14%), Positives = 13/41 (31%)
Query: 151 IVIAILELLKYHPRVLYIDIDVHHGDGVQDAFYLTDRVMTV 191
I+ IL ++ I D ++ D + +
Sbjct: 337 ILKEILNSNAKDDDIVEITFFKEENDEIKKFENSNDCIGQI 377
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.141 0.453
Gapped
Lambda K H
0.267 0.0770 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,612,951
Number of extensions: 281292
Number of successful extensions: 624
Number of sequences better than 10.0: 1
Number of HSP's gapped: 610
Number of HSP's successfully gapped: 29
Length of query: 285
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 192
Effective length of database: 4,105,140
Effective search space: 788186880
Effective search space used: 788186880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (25.7 bits)