RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10342
(285 letters)
>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 364
Score = 166 bits (422), Expect = 6e-50
Identities = 102/251 (40%), Positives = 147/251 (58%), Gaps = 5/251 (1%)
Query: 8 YFYNPDVGNFHYGAKHPMKPHRLSVINSLILGYGLHKKMQIYRPYKASYHDMCRFHSAEY 67
Y Y+P+ + P R S+++SLI Y LHK+M+I +P AS +M FH+ Y
Sbjct: 5 YIYSPEYVSM--CDSLAKIPKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAY 62
Query: 68 IDFLHTVSPDKIHEHTKFLCQFASGEDCPIFHGLYDFCSMYTGASLEGAIQLNNNCCDIA 127
+ L VS + +H + ++ G DCP G++D+ + GA++ A L + C +A
Sbjct: 63 LQHLQKVSQEGDDDHPDSI-EYGLGYDCPATEGIFDYAAAIGGATITAAQCLIDGMCKVA 121
Query: 128 INWSGGLHHAKKSEASGFCYVNDIVIAILELLKYHPRVLYIDIDVHHGDGVQDAFYLTDR 187
INWSGG HHAKK EASGFCY+ND V+ IL L + R+LY+D+D+HHGDGV+DAF T +
Sbjct: 122 INWSGGWHHAKKDEASGFCYLNDAVLGILRLRRKFERILYVDLDLHHGDGVEDAFSFTSK 181
Query: 188 VMTVSFHKYGGGFFPCSGDMYEIGAEGGRYYSVNVRNRDLSPHSSHKRMFRERVHSLLPF 247
VMTVS HK+ GFFP +GD+ ++G GRYYSVNV +D + ++ + +
Sbjct: 182 VMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQA 241
Query: 248 V--FVVFFSSG 256
V G
Sbjct: 242 FNPKAVVLQLG 252
>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId:
63363]}
Length = 372
Score = 156 bits (396), Expect = 4e-46
Identities = 69/257 (26%), Positives = 118/257 (45%), Gaps = 6/257 (2%)
Query: 4 KTVSYFYNPDVGNFHYGAKHPMKPHRLSVINSLILGYGLHKKMQIYRPYKASYHDMCRFH 63
K V D G + Y HP+K R+S++ L + ++ + A+ ++ FH
Sbjct: 1 KKVKLIGTLDYGKYRYPKNHPLKIPRVSLLLRFKDAMNLIDEKELIKSRPATKEELLLFH 60
Query: 64 SAEYIDFLHTVSPDKIHEHTKFLCQFASGEDCPIFHGLYDFCSMYTGASLEGAIQLNNNC 123
+ +YI+ L + G + P+ + ++ S+ TG++++ +
Sbjct: 61 TEDYINTLMEAERCQCVPKGAREKYNIGGYENPVSYAMFTGSSLATGSTVQAIEEFLKGN 120
Query: 124 CDIAINWSGGLHHAKKSEASGFCYVNDIVIAILELLKYHPR-VLYIDIDVHHGDGVQDAF 182
N +GG+HHA KS A+GFCY+N+ + I L K + +LYID+D HH DGVQ+AF
Sbjct: 121 VA--FNPAGGMHHAFKSRANGFCYINNPAVGIEYLRKKGFKRILYIDLDAHHCDGVQEAF 178
Query: 183 YLTDRVMTVSFHKYGGGFFP-CSGDMYEIGAEGGRYYSVNVRNRDLSPHSSHKRMFRERV 241
Y TD+V +S H+ FP G + EIG G+ Y++N+ + + +
Sbjct: 179 YDTDQVFVLSLHQSPEYAFPFEKGFLEEIGEGKGKGYNLNIPLPKGLNDNEFLFALEKSL 238
Query: 242 HSLLPF--VFVVFFSSG 256
+ V G
Sbjct: 239 EIVKEVFEPEVYLLQLG 255
>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 386
Score = 108 bits (271), Expect = 5e-28
Identities = 59/271 (21%), Positives = 99/271 (36%), Gaps = 23/271 (8%)
Query: 5 TVSYFYNPDVGNFHYG----AKHPMKPHRLSVINSLILGYGLHKKMQIYRPYKASYHDMC 60
T Y+ + ++HP R+ I S + GL + + R KAS ++
Sbjct: 5 TTGLIYDSVMLKHQCSCGDNSRHPEHAGRIQSIWSRLQERGLRSQCECLRGRKASLEELQ 64
Query: 61 RFHSAEYIDFLHT-----VSPDKIHEHTKFLCQFASGEDCPIFH----------GLYDFC 105
HS ++ T + D + C +
Sbjct: 65 SVHSERHVLLYGTNPLSRLKLDNGKLAGLLAQRMFVMLPCGGVGVDTDTIWNELHSSNAA 124
Query: 106 SMYTGASLEGAIQLNNNCCDIAINWSGGL-HHAKKSEASGFCYVNDIVIAILELLKYH-- 162
G+ + A ++ + HHA S A GFC+ N + IA +L +
Sbjct: 125 RWAAGSVTDLAFKVASRELKNGFAVVRPPGHHADHSTAMGFCFFNSVAIACRQLQQQSKA 184
Query: 163 PRVLYIDIDVHHGDGVQDAFYLTDRVMTVSFHKYGGGF-FPCSGDMYEIGAEGGRYYSVN 221
++L +D DVHHG+G Q FY V+ +S H++ G FP SG + E+GA G ++VN
Sbjct: 185 SKILIVDWDVHHGNGTQQTFYQDPSVLYISLHRHDDGNFFPGSGAVDEVGAGSGEGFNVN 244
Query: 222 VRNRDLSPHSSHKRMFRERVHSLLPFVFVVF 252
V + ++ + F
Sbjct: 245 VAWAGGLDPPMGDPEYLAAFRIVVMPIAREF 275
>d1bk8a_ g.3.7.5 (A:) Antimicrobial protein 1 (AH-AMP1) {Horse
chestnut (Aesculus hippocastanum) [TaxId: 43364]}
Length = 50
Score = 27.2 bits (60), Expect = 0.38
Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 3/33 (9%)
Query: 120 NNNCCDIAINWSGGLH---HAKKSEASGFCYVN 149
+C +W H H +++ FCY N
Sbjct: 17 TAHCDKQCQDWEKASHGACHKRENHWKCFCYFN 49
>d1ux6a2 g.75.1.1 (A:813-936) Thrombospondin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 124
Score = 28.3 bits (62), Expect = 0.54
Identities = 16/82 (19%), Positives = 22/82 (26%), Gaps = 3/82 (3%)
Query: 100 GLYDFCSMYTGASLEGAIQLNNNCCDIAINWSGGLHHAKKSEASGFCYVNDIVIAILELL 159
+ D C +G +NC + K C +D I +
Sbjct: 21 RIGDTCDNNQDIDEDGHQNNLDNCPYVPNANQA---DHDKDGKGDACDHDDDNDGIPDDK 77
Query: 160 KYHPRVLYIDIDVHHGDGVQDA 181
V D GDG DA
Sbjct: 78 DNCRLVPNPDQKDSDGDGRGDA 99
>d1tlla2 c.23.5.2 (A:750-951) Nitric oxide (NO) synthase FMN domain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 202
Score = 27.9 bits (61), Expect = 1.0
Identities = 17/125 (13%), Positives = 31/125 (24%), Gaps = 10/125 (8%)
Query: 54 ASYHDMCRFHSAE--YIDFLHTVSPDKIHEHTKFLCQFASGEDCPIFHGLYDFCSMYTGA 111
+++ + + E + P+ + E K +
Sbjct: 58 STFGNGDPPENGEKFGCALMEMRHPNSVQEERKSYKVRFNSVSSYSDSRKSSGDGPDLRD 117
Query: 112 SLEGAIQLNNNCCDIAINWSGGLHHAKKSEASGFCYVNDIVIAILELLKYHPRVLYIDID 171
+ E L N + S H FC V +LE L + + D
Sbjct: 118 NFESTGPLANVRFSVFGLGSRAYPH--------FCAFGHAVDTLLEELGGERILKMREGD 169
Query: 172 VHHGD 176
G
Sbjct: 170 ELCGQ 174
>d1rdsa_ d.1.1.4 (A:) RNase Ms {Molsin (Aspergillus saitoi) [TaxId:
5063]}
Length = 105
Score = 25.2 bits (55), Expect = 5.3
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 193 FHKYGGGFFPCSGDMYE--IGAEGGRY 217
+H Y G FP SG YE I ++ Y
Sbjct: 41 YHDYEGFDFPVSGTYYEYPIMSDYDVY 67
>d1s4na_ c.68.1.16 (A:) Glycolipid 2-alpha-mannosyltransferase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 339
Score = 25.6 bits (56), Expect = 6.9
Identities = 13/53 (24%), Positives = 16/53 (30%), Gaps = 13/53 (24%)
Query: 45 KMQIYRPYKASYHDMCRFHS--------AEYIDFLHTVSPDKIHEHTKFLCQF 89
+ SY MCR+ S E D+ V PD K C
Sbjct: 106 ATKYIYGGSESYRHMCRYQSGFFWRHELLEEYDWYWRVEPD-----IKLYCDI 153
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.327 0.141 0.453
Gapped
Lambda K H
0.267 0.0449 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,143,938
Number of extensions: 54855
Number of successful extensions: 179
Number of sequences better than 10.0: 1
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 17
Length of query: 285
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 201
Effective length of database: 1,254,276
Effective search space: 252109476
Effective search space used: 252109476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.5 bits)