BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy10344
         (189 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2D1L|A Chain A, Structure Of F-Actin Binding Domain Imd Of Mim (Missing In
           Metastasis)
 pdb|2D1L|B Chain B, Structure Of F-Actin Binding Domain Imd Of Mim (Missing In
           Metastasis)
          Length = 253

 Score = 98.2 bits (243), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 50/123 (40%), Positives = 72/123 (58%), Gaps = 3/123 (2%)

Query: 3   KKYKKARSELKKRSTDTLRLQKKVGRKGVVGRN---ADLQKALQEVNXXXXXXXXXXXXX 59
           K+YKKAR E+KK+S+DTL+LQKK  +    GR      L  ALQ+VN             
Sbjct: 131 KEYKKARQEIKKKSSDTLKLQKKAKKVDAQGRGDIQPQLDSALQDVNDKYLLLEETEKQA 190

Query: 60  XXXXXXXXRSRYCVFVTFLKPVVDEEVAMLSELSHLQEVMVQLEKHTSDPYSLPPASEQV 119
                   R R+C F++ L+PV++EE++ L E++HLQ +   L+  T DP+ LP +SEQV
Sbjct: 191 VRKALIEERGRFCTFISXLRPVIEEEISXLGEITHLQTISEDLKSLTXDPHKLPSSSEQV 250

Query: 120 MAD 122
           + D
Sbjct: 251 ILD 253


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.129    0.366 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,213,316
Number of Sequences: 62578
Number of extensions: 68758
Number of successful extensions: 144
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 142
Number of HSP's gapped (non-prelim): 1
length of query: 189
length of database: 14,973,337
effective HSP length: 93
effective length of query: 96
effective length of database: 9,153,583
effective search space: 878743968
effective search space used: 878743968
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)