Query psy10344
Match_columns 189
No_of_seqs 89 out of 113
Neff 4.4
Searched_HMMs 46136
Date Fri Aug 16 15:34:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10344.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10344hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07643 I-BAR_IMD_MIM Inverse 100.0 1.2E-37 2.6E-42 267.1 12.5 111 2-113 121-231 (231)
2 cd07646 I-BAR_IMD_IRSp53 Inver 100.0 1E-32 2.2E-37 236.9 10.9 112 1-112 112-232 (232)
3 PF08397 IMD: IRSp53/MIM homol 100.0 1.1E-31 2.3E-36 225.9 10.4 111 2-113 108-219 (219)
4 cd07645 I-BAR_IMD_BAIAP2L1 Inv 100.0 5.7E-31 1.2E-35 225.1 10.5 108 1-108 110-226 (226)
5 cd07605 I-BAR_IMD Inverse (I)- 100.0 3.4E-29 7.3E-34 214.2 11.0 105 2-106 118-223 (223)
6 cd07644 I-BAR_IMD_BAIAP2L2 Inv 99.9 4.7E-23 1E-27 175.2 8.4 100 2-105 111-214 (215)
7 PF08397 IMD: IRSp53/MIM homol 95.9 0.13 2.7E-06 43.6 10.7 98 2-105 101-204 (219)
8 cd07605 I-BAR_IMD Inverse (I)- 95.4 0.049 1.1E-06 47.2 6.7 39 2-40 111-152 (223)
9 smart00721 BAR BAR domain. 94.3 0.66 1.4E-05 38.1 10.3 100 3-102 134-237 (239)
10 KOG3771|consensus 91.3 4.7 0.0001 38.8 12.5 75 36-110 157-231 (460)
11 PF03938 OmpH: Outer membrane 88.9 4.4 9.6E-05 31.8 8.9 81 3-83 43-123 (158)
12 cd07648 F-BAR_FCHO The F-BAR ( 88.4 4.3 9.3E-05 34.9 9.1 99 17-124 150-248 (261)
13 PF03114 BAR: BAR domain; Int 88.2 9.2 0.0002 30.4 10.4 98 3-103 131-229 (229)
14 cd07307 BAR The Bin/Amphiphysi 86.9 9.4 0.0002 29.1 9.5 86 5-92 96-184 (194)
15 cd07673 F-BAR_FCHO2 The F-BAR 84.3 15 0.00033 32.2 10.6 99 17-124 157-255 (269)
16 cd07611 BAR_Amphiphysin_I_II T 82.7 27 0.00059 30.3 11.2 85 16-101 117-204 (211)
17 cd07595 BAR_RhoGAP_Rich-like T 82.0 18 0.0004 31.6 10.1 74 36-113 161-235 (244)
18 cd07588 BAR_Amphiphysin The Bi 81.1 32 0.00069 29.6 11.1 65 35-99 138-202 (211)
19 cd07674 F-BAR_FCHO1 The F-BAR 80.9 28 0.0006 30.3 10.8 83 38-124 166-248 (261)
20 cd07590 BAR_Bin3 The Bin/Amphi 76.3 51 0.0011 28.6 11.0 78 16-93 121-202 (225)
21 cd07612 BAR_Bin2 The Bin/Amphi 74.0 59 0.0013 28.2 10.8 65 36-100 139-203 (211)
22 cd07591 BAR_Rvs161p The Bin/Am 63.9 78 0.0017 27.2 9.4 65 36-100 144-209 (224)
23 cd07625 BAR_Vps17p The Bin/Amp 61.1 65 0.0014 28.2 8.5 65 4-74 130-197 (230)
24 cd07593 BAR_MUG137_fungi The B 61.1 32 0.0007 29.7 6.5 33 73-105 178-211 (215)
25 PRK10780 periplasmic chaperone 60.0 77 0.0017 25.6 8.3 28 2-29 49-76 (165)
26 PF13874 Nup54: Nucleoporin co 59.1 21 0.00045 28.4 4.7 85 37-123 48-140 (141)
27 cd07613 BAR_Endophilin_A1 The 57.8 1.1E+02 0.0024 26.7 9.4 36 73-108 186-222 (223)
28 PF11570 E2R135: Coiled-coil r 57.6 38 0.00082 27.8 6.0 58 3-76 8-65 (136)
29 cd07606 BAR_SFC_plant The Bin/ 52.6 1.5E+02 0.0032 25.3 10.0 61 36-97 136-198 (202)
30 KOG1595|consensus 51.8 12 0.00026 36.6 2.7 46 40-91 254-299 (528)
31 KOG4403|consensus 51.8 75 0.0016 31.1 7.9 85 9-99 360-444 (575)
32 cd07615 BAR_Endophilin_A3 The 48.8 65 0.0014 28.1 6.5 32 77-108 190-222 (223)
33 cd07618 BAR_Rich1 The Bin/Amph 48.7 1.9E+02 0.0042 25.6 10.4 67 37-107 164-231 (246)
34 cd07681 F-BAR_PACSIN3 The F-BA 46.8 1.9E+02 0.0041 25.7 9.2 70 18-89 169-241 (258)
35 cd07600 BAR_Gvp36 The Bin/Amph 44.2 2E+02 0.0043 25.3 8.8 60 36-100 180-240 (242)
36 cd07596 BAR_SNX The Bin/Amphip 44.1 82 0.0018 25.1 6.1 42 58-105 169-215 (218)
37 PF06409 NPIP: Nuclear pore co 44.1 57 0.0012 29.3 5.4 51 83-137 191-247 (265)
38 cd07614 BAR_Endophilin_A2 The 44.0 92 0.002 27.2 6.7 38 71-108 184-222 (223)
39 COG1422 Predicted membrane pro 43.4 20 0.00044 31.1 2.5 37 12-55 77-113 (201)
40 PF09726 Macoilin: Transmembra 41.0 2.3E+02 0.005 28.7 9.8 54 3-57 552-611 (697)
41 cd07680 F-BAR_PACSIN1 The F-BA 40.3 1.5E+02 0.0033 26.3 7.6 43 39-81 192-234 (258)
42 cd07655 F-BAR_PACSIN The F-BAR 39.5 1.7E+02 0.0036 25.4 7.6 65 17-81 168-234 (258)
43 PRK10722 hypothetical protein; 38.2 48 0.001 29.7 4.1 43 58-104 154-197 (247)
44 cd07592 BAR_Endophilin_A The B 37.8 2.7E+02 0.0059 24.1 9.7 37 72-108 185-222 (223)
45 COG4717 Uncharacterized conser 37.3 2.9E+02 0.0063 29.3 9.8 84 31-115 176-271 (984)
46 PF08580 KAR9: Yeast cortical 36.2 3.9E+02 0.0084 27.1 10.5 44 63-106 310-358 (683)
47 KOG3684|consensus 35.9 1.5E+02 0.0032 29.0 7.2 29 84-112 448-477 (489)
48 cd07648 F-BAR_FCHO The F-BAR ( 34.9 2.9E+02 0.0063 23.6 10.5 75 37-115 179-256 (261)
49 PF14854 LURAP: Leucine rich a 30.7 84 0.0018 25.3 4.0 41 130-170 57-98 (121)
50 PF10168 Nup88: Nuclear pore c 30.3 4.5E+02 0.0098 26.7 9.9 46 61-106 608-655 (717)
51 PF06730 FAM92: FAM92 protein; 29.5 3.9E+02 0.0085 23.5 10.2 49 45-104 162-211 (219)
52 cd07647 F-BAR_PSTPIP The F-BAR 29.5 2.1E+02 0.0045 24.4 6.5 11 18-28 154-164 (239)
53 PF13942 Lipoprotein_20: YfhG 28.9 1.2E+02 0.0026 26.0 4.8 44 56-103 106-150 (179)
54 PF07373 CAMP_factor: CAMP fac 28.7 1.4E+02 0.0031 26.4 5.4 67 37-121 16-86 (228)
55 COG1155 NtpA Archaeal/vacuolar 28.5 1.9E+02 0.0041 28.9 6.7 61 30-91 447-523 (588)
56 KOG3850|consensus 28.5 2.1E+02 0.0046 27.6 6.8 23 60-82 297-319 (455)
57 PF01956 DUF106: Integral memb 28.2 1.3E+02 0.0028 24.1 4.8 44 9-52 42-85 (168)
58 COG3883 Uncharacterized protei 27.0 2.3E+02 0.005 25.6 6.5 64 5-72 47-110 (265)
59 PF09325 Vps5: Vps5 C terminal 26.8 2.4E+02 0.0053 23.1 6.3 37 63-105 192-233 (236)
60 cd07647 F-BAR_PSTPIP The F-BAR 26.3 2.8E+02 0.0061 23.6 6.8 10 52-61 190-199 (239)
61 KOG4796|consensus 25.7 3.9E+02 0.0083 26.9 8.2 79 4-105 516-596 (604)
62 PF07957 DUF3294: Protein of u 25.6 2.1E+02 0.0046 25.2 5.9 25 39-63 73-97 (216)
63 PF03792 PBC: PBC domain; Int 25.4 4.5E+02 0.0097 22.8 7.8 36 37-72 155-190 (191)
64 PF07303 Occludin_ELL: Occludi 25.1 3.1E+02 0.0068 20.9 6.6 67 3-77 22-88 (101)
65 COG1422 Predicted membrane pro 24.9 99 0.0021 26.9 3.7 23 1-23 80-104 (201)
66 cd07649 F-BAR_GAS7 The F-BAR ( 24.7 3E+02 0.0065 23.8 6.7 29 49-77 181-209 (233)
67 cd07672 F-BAR_PSTPIP2 The F-BA 24.2 1.6E+02 0.0035 25.5 4.9 61 18-79 155-218 (240)
68 PF04645 DUF603: Protein of un 23.9 4.7E+02 0.01 22.5 7.7 58 6-63 108-165 (181)
69 PF00429 TLV_coat: ENV polypro 23.7 2.6E+02 0.0056 27.5 6.7 31 57-91 472-502 (561)
70 cd07679 F-BAR_PACSIN2 The F-BA 23.3 5.5E+02 0.012 23.0 9.8 63 18-81 169-234 (258)
71 KOG3091|consensus 22.5 7.6E+02 0.017 24.5 9.5 85 40-125 355-446 (508)
72 cd07353 harmonin_N N-terminal 21.9 92 0.002 23.2 2.5 29 85-113 28-56 (79)
73 cd07658 F-BAR_NOSTRIN The F-BA 21.7 1.5E+02 0.0032 25.5 4.3 40 39-78 195-234 (239)
74 PF04644 Motilin_ghrelin: Moti 21.6 48 0.001 20.4 0.9 17 17-33 7-23 (28)
75 cd07635 BAR_GRAF2 The Bin/Amph 21.3 5.4E+02 0.012 22.3 9.5 60 37-97 141-202 (207)
76 PLN03069 magnesiumprotoporphyr 21.1 67 0.0014 34.5 2.3 53 56-110 646-698 (1220)
77 PF08361 TetR_C_2: MAATS-type 20.8 1.9E+02 0.0042 21.8 4.3 61 50-114 4-73 (121)
78 PF08439 Peptidase_M3_N: Oligo 20.6 19 0.00042 24.8 -1.2 18 107-124 33-50 (70)
79 PLN00180 NDF6 (NDH-dependent f 20.4 1E+02 0.0022 26.2 2.8 22 46-67 141-163 (180)
80 PF10267 Tmemb_cc2: Predicted 20.3 3.6E+02 0.0078 25.6 6.7 24 58-81 247-270 (395)
81 PF14389 Lzipper-MIP1: Leucine 20.1 2E+02 0.0044 21.3 4.2 23 85-107 62-85 (88)
No 1
>cd07643 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Missing In Metastasis. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. Members of this subfamily include missing in metastasis (MIM) or metastasis suppressor 1 (MTSS1), metastasis suppressor 1-like (MTSSL) or ABBA (Actin-Bundling protein with BAIAP2 homology), and similar proteins. They contain an N-terminal IMD and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. MIM was originally identified as a missing transcript from metastatic bladder and prostate cancer cells. It is a scaffold protein that functions in a signaling pathway between the PDGF receptor, Src kinases, and actin assembly. It may also function as a cofactor of the Sonic hedgehog (Shh) transcriptional pathway and may participate in tumor development and progression via this pathway. ABBA regulate
Probab=100.00 E-value=1.2e-37 Score=267.05 Aligned_cols=111 Identities=58% Similarity=0.902 Sum_probs=109.0
Q ss_pred hhHHHHHHHHHhhhhhhHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCcc
Q psy10344 2 LKKYKKARSELKKRSTDTLRLQKKVGRKGVVGRNADLQKALQEVNERKAILEEAEKKALRAALIEERSRYCVFVTFLKPV 81 (189)
Q Consensus 2 ake~Kr~r~ElKkk~~~~~K~QKK~RRKg~g~~~~~l~~~lqdvs~rq~elee~e~~~lR~ALlEERrRfCflV~~~~pV 81 (189)
||+|||+|+|+|++++|++|+|||+ |||.++.++++|++++||++|+.+||++++++||+||||||+||||||++++||
T Consensus 121 ~k~~kk~R~elKk~~~dt~klqkk~-rKg~~~~~~~ldsa~~dvn~k~~~lEe~ek~alR~aLiEER~Rfc~Fvs~l~pV 199 (231)
T cd07643 121 AKEYKKARQEIKKKSSDTIRLQKKA-RKGKGDLQPQLDSAMQDVNDKYLLLEETEKKAVRNALIEERGRFCTFVSFLKPV 199 (231)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHH-hccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 7999999999999999999999999 667799999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhchhHHHHHHHHHHHHhCCCCCCc
Q psy10344 82 VDEEVAMLSELSHLQEVMVQLEKHTSDPYSLP 113 (189)
Q Consensus 82 v~~ei~~~~e~~~Lqe~l~~w~~~~~dP~kLP 113 (189)
+++||+|++|++|||++++++..+|.||++||
T Consensus 200 l~~e~~ml~E~~hl~~~~~~l~~~t~~p~~lp 231 (231)
T cd07643 200 LDEEISMLGEVTHLQTIMEDLASLTADPHKLP 231 (231)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhcCcccCc
Confidence 99999999999999999999999999999999
No 2
>cd07646 I-BAR_IMD_IRSp53 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Insulin Receptor tyrosine kinase Substrate p53. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. IRSp53 (Insulin Receptor tyrosine kinase Substrate p53) is also known as BAIAP2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2). It is a scaffolding protein that takes part in many signaling pathways including Cdc42-induced filopodia formation, Rac-mediated lamellipodia extension, and spine morphogenesis. IRSp53 exists as multiple splicing variants that differ mainly at the C-termini. One variant (T-form) is expressed exclusively in human breast cancer cells. The gene encoding IRSp53 is a putative susceptibility gene for Gilles de la Tourette syndrome. IRSp53 contains an N-terminal IMD, a CRIB (Cdc42 and Rac interactive binding motif), an SH3 domain, and a WASP
Probab=99.98 E-value=1e-32 Score=236.88 Aligned_cols=112 Identities=23% Similarity=0.347 Sum_probs=105.3
Q ss_pred ChhHHHHHHHHHhhhhhhHHHHH---HHhhhcCCCCCchHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy10344 1 MLKKYKKARSELKKRSTDTLRLQ---KKVGRKGVVGRNADL-----QKALQEVNERKAILEEAEKKALRAALIEERSRYC 72 (189)
Q Consensus 1 ~ake~Kr~r~ElKkk~~~~~K~Q---KK~RRKg~g~~~~~l-----~~~lqdvs~rq~elee~e~~~lR~ALlEERrRfC 72 (189)
|.+++|+|++|||.|+++++|+| ||+|||++|.+++++ .++++++++||.+||+|+++|||+||+|||||||
T Consensus 112 i~a~~Kky~~e~k~k~~sleK~qseLKKlRrKsqg~k~~~ky~~ke~q~~~~~~~~q~ele~f~~~~~k~Al~EErRRyc 191 (232)
T cd07646 112 LTAALKKYQTEHRSKGESLEKCQAELKKLRKKSQGSKNPQKYSDKELQYIEAISNKQGELENYVSDGYKTALTEERRRYC 191 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999 999999998777665 4789999999999999999999999999999999
Q ss_pred hhhhccCcchHHHHHhhhch-hHHHHHHHHHHHHhCCCCCC
Q psy10344 73 VFVTFLKPVVDEEVAMLSEL-SHLQEVMVQLEKHTSDPYSL 112 (189)
Q Consensus 73 flV~~~~pVv~~ei~~~~e~-~~Lqe~l~~w~~~~~dP~kL 112 (189)
||||+||.|++..+++|+.. ++|+++||.|++.|+||++|
T Consensus 192 flvdk~C~~~~~~~~yh~k~~~lL~~kl~~Wqe~c~~~~~~ 232 (232)
T cd07646 192 FLVEKQCAVAKNSIAYHSKGKELLTQKLPSWQQACSDPNKI 232 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhcCcccC
Confidence 99999999999999999884 99999999999999999986
No 3
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=99.97 E-value=1.1e-31 Score=225.88 Aligned_cols=111 Identities=46% Similarity=0.668 Sum_probs=95.3
Q ss_pred hhHHHHHHHHHhhhhhhHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCcc
Q psy10344 2 LKKYKKARSELKKRSTDTLRLQKKVGRKGVVGRNADLQKALQEVNERKAILEEAEKKALRAALIEERSRYCVFVTFLKPV 81 (189)
Q Consensus 2 ake~Kr~r~ElKkk~~~~~K~QKK~RRKg~g~~~~~l~~~lqdvs~rq~elee~e~~~lR~ALlEERrRfCflV~~~~pV 81 (189)
.++||+.+.+++|+..++.|++||. +||++.....+++++++|+.++.+||+|++++||+||+||||||||||++||||
T Consensus 108 ~ke~k~~~~~l~K~~se~~Kl~KK~-~kgk~~~~~~~~~~~~~v~~~~~ele~~~~~~~r~al~EERrRyc~lv~~~~~~ 186 (219)
T PF08397_consen 108 EKEYKRKRDELKKAESELKKLRKKS-RKGKDDQKYELKEALQDVTERQSELEEFEKQSLREALLEERRRYCFLVEKHCSV 186 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCC-CCCTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc-cCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777777777777776 555555556778999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhc-hhHHHHHHHHHHHHhCCCCCCc
Q psy10344 82 VDEEVAMLSE-LSHLQEVMVQLEKHTSDPYSLP 113 (189)
Q Consensus 82 v~~ei~~~~e-~~~Lqe~l~~w~~~~~dP~kLP 113 (189)
++++++||++ +++|+++|++|+++|+||++||
T Consensus 187 ~~~~~~~~~~~~~~L~~~~~~w~~~~~~~~~lP 219 (219)
T PF08397_consen 187 VKSELAFHNEAVEHLQEKLDDWQELCSDPSKLP 219 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTS-TTS--
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhcCcccCc
Confidence 9999999999 8999999999999999999999
No 4
>cd07645 I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. BAIAP2L1 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1) is also known as IRTKS (Insulin Receptor Tyrosine Kinase Substrate). It is widely expressed, serves as a substrate for the insulin receptor, and binds the small GTPase Rac. It plays a role in regulating the actin cytoskeleton and colocalizes with F-actin, cortactin, VASP, and vinculin. BAIAP2L1 expression leads to the formation of short actin bundles, distinct from filopodia-like protrusions induced by the expression of the related protein IRSp53. It contains an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The IMD domain of
Probab=99.97 E-value=5.7e-31 Score=225.05 Aligned_cols=108 Identities=24% Similarity=0.297 Sum_probs=101.6
Q ss_pred ChhHHHHHHHHHhhhhhhHHHHH---HHhhhcCCCCCchHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy10344 1 MLKKYKKARSELKKRSTDTLRLQ---KKVGRKGVVGRNADL-----QKALQEVNERKAILEEAEKKALRAALIEERSRYC 72 (189)
Q Consensus 1 ~ake~Kr~r~ElKkk~~~~~K~Q---KK~RRKg~g~~~~~l-----~~~lqdvs~rq~elee~e~~~lR~ALlEERrRfC 72 (189)
|..++|||++|+|.|+++++|+| ||+|||+||++++.. +++|++|++||.+||.|+++|||+||+|||||||
T Consensus 110 i~a~~Kkyq~E~k~k~dsLeK~~seLKK~RRKsqg~kn~~kye~Ke~~~~e~~~~~q~el~~f~~~~~k~AL~EErRRyc 189 (226)
T cd07645 110 MTATLKRYQTEHKNKLDSLEKSQADLKKIRRKSQGRRNASKYEHKENEYLETVTSRQSDIQKFIADGCREALLEEKRRFC 189 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999 999999999888853 6899999999999999999999999999999999
Q ss_pred hhhhccCcchHHHHHhhhc-hhHHHHHHHHHHHHhCC
Q psy10344 73 VFVTFLKPVVDEEVAMLSE-LSHLQEVMVQLEKHTSD 108 (189)
Q Consensus 73 flV~~~~pVv~~ei~~~~e-~~~Lqe~l~~w~~~~~d 108 (189)
||||+||.|+.+.+.+|+. .++|+++||.|++.|+|
T Consensus 190 FlvdkhC~~~~~~~~yh~k~~~lL~~klp~Wqe~c~d 226 (226)
T cd07645 190 FLVDKHCSFSNHIHYFHQQAAELLNSKLPVWQETCSD 226 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHhhcC
Confidence 9999999999988888887 49999999999999987
No 5
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=99.96 E-value=3.4e-29 Score=214.20 Aligned_cols=105 Identities=31% Similarity=0.476 Sum_probs=94.2
Q ss_pred hhHHHHHHHHHhhhhhhHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCcc
Q psy10344 2 LKKYKKARSELKKRSTDTLRLQKKVGRKGVVGRNADLQKALQEVNERKAILEEAEKKALRAALIEERSRYCVFVTFLKPV 81 (189)
Q Consensus 2 ake~Kr~r~ElKkk~~~~~K~QKK~RRKg~g~~~~~l~~~lqdvs~rq~elee~e~~~lR~ALlEERrRfCflV~~~~pV 81 (189)
++|||+.+.+++|...++.|++||.+++|.++....++++|++|++++.+||+|+++|||+||+||||||||||++||||
T Consensus 118 ~~E~K~~~~~l~K~~sel~Kl~KKs~~~~~~k~~~~l~~~~e~v~~k~~ele~~~~~~lr~al~EERrRyc~lv~~~c~v 197 (223)
T cd07605 118 KKEYKQKREDLDKARSELKKLQKKSQKSGTGKYQEKLDQALEELNDKQKELEAFVSQGLRDALLEERRRYCFLVDKHCSV 197 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777888886667888888999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhc-hhHHHHHHHHHHHHh
Q psy10344 82 VDEEVAMLSE-LSHLQEVMVQLEKHT 106 (189)
Q Consensus 82 v~~ei~~~~e-~~~Lqe~l~~w~~~~ 106 (189)
+++++++|.. .++|+++||.|+++|
T Consensus 198 ~~~e~~~~~~~~~~L~~~l~~w~~~~ 223 (223)
T cd07605 198 AKHEIAYHAKAMTLLSTRLPLWQELC 223 (223)
T ss_pred HHHHHHHHHHHHHHHHHhhHHhhhcC
Confidence 9999998876 799999999999987
No 6
>cd07644 I-BAR_IMD_BAIAP2L2 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 2. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. This group is composed of uncharacterized proteins known as BAIAP2L2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 2). They contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The related proteins, BAIAP2L1 and IRSp53, function as regulators of membrane dynamics and the actin cytoskeleton. The IMD domain binds and bundles actin filaments, binds membranes and produces membrane protrusions, and interacts with the small GTPase Rac.
Probab=99.88 E-value=4.7e-23 Score=175.20 Aligned_cols=100 Identities=14% Similarity=0.164 Sum_probs=88.7
Q ss_pred hhHHHHHHHHHhhhhhhHHHHH---HHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcc
Q psy10344 2 LKKYKKARSELKKRSTDTLRLQ---KKVGRKGVVGRNADLQKALQEVNERKAILEEAEKKALRAALIEERSRYCVFVTFL 78 (189)
Q Consensus 2 ake~Kr~r~ElKkk~~~~~K~Q---KK~RRKg~g~~~~~l~~~lqdvs~rq~elee~e~~~lR~ALlEERrRfCflV~~~ 78 (189)
..++|||+.|+|.|+++++|+| ||.|||+++. .-...++|+.+ +.+|++|+++|+|+||+||||||||||++|
T Consensus 111 ~~s~KkYq~E~r~k~dsleK~~selkk~rrk~qkn-~~e~kE~~~~l---q~~~~~f~~~~~k~Al~eErRRy~Flvek~ 186 (215)
T cd07644 111 EDSRRVYELEYRHRAANLEKCMSELWRMERQRDRN-VREMKENVNRL---RQSMQAFLKESQRAAELEEKRRYRFLAEKH 186 (215)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhcCC-chhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4589999999999999999999 8999998832 22234688888 899999999999999999999999999999
Q ss_pred CcchHHHHHhhhch-hHHHHHHHHHHHH
Q psy10344 79 KPVVDEEVAMLSEL-SHLQEVMVQLEKH 105 (189)
Q Consensus 79 ~pVv~~ei~~~~e~-~~Lqe~l~~w~~~ 105 (189)
|.|.+.-+++++.+ ++|+.+||.|++.
T Consensus 187 c~~~k~~~~yh~ka~~ll~~kl~~Wqe~ 214 (215)
T cd07644 187 YLLNNTFLQFQSRARGMLQTRVPSWKEQ 214 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhccC
Confidence 99999888888875 9999999999974
No 7
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=95.88 E-value=0.13 Score=43.62 Aligned_cols=98 Identities=15% Similarity=0.217 Sum_probs=61.7
Q ss_pred hhHHHHHHHHHhhhhhhHHHHH---HHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh--h
Q psy10344 2 LKKYKKARSELKKRSTDTLRLQ---KKVGRKGVVGRNADLQKALQEVNERKAILEEAEKKALRAALIEERSRYCVFV--T 76 (189)
Q Consensus 2 ake~Kr~r~ElKkk~~~~~K~Q---KK~RRKg~g~~~~~l~~~lqdvs~rq~elee~e~~~lR~ALlEERrRfCflV--~ 76 (189)
....|+|+.|+|++.+++.|.+ +|++||.++|++...-..-+.+..-.....+++ .-+++++ |=+.+- -
T Consensus 101 ~~~~K~y~ke~k~~~~~l~K~~se~~Kl~KK~~kgk~~~~~~~~~~~~~v~~~~~ele-~~~~~~~-----r~al~EERr 174 (219)
T PF08397_consen 101 TQLEKDYEKEYKRKRDELKKAESELKKLRKKSRKGKDDQKYELKEALQDVTERQSELE-EFEKQSL-----REALLEERR 174 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTSCHHHHHHHHHHHHHHHHHHHH-HHHHHHH-----HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccccHHHHHHHHHHHHHHHHHH-HHHHHHH-----HHHHHHHHH
Confidence 3567899999999999999988 888899999877754444444332222222222 2333332 222222 3
Q ss_pred ccCcchHHHHHhhhc-hhHHHHHHHHHHHH
Q psy10344 77 FLKPVVDEEVAMLSE-LSHLQEVMVQLEKH 105 (189)
Q Consensus 77 ~~~pVv~~ei~~~~e-~~~Lqe~l~~w~~~ 105 (189)
+||-||+..+.++.. +..+.+.+..+++.
T Consensus 175 Ryc~lv~~~~~~~~~~~~~~~~~~~~L~~~ 204 (219)
T PF08397_consen 175 RYCFLVEKHCSVVKSELAFHNEAVEHLQEK 204 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 678888888887775 56666666655554
No 8
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=95.44 E-value=0.049 Score=47.21 Aligned_cols=39 Identities=23% Similarity=0.230 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHhhhhhhHHHHH---HHhhhcCCCCCchHHHH
Q psy10344 2 LKKYKKARSELKKRSTDTLRLQ---KKVGRKGVVGRNADLQK 40 (189)
Q Consensus 2 ake~Kr~r~ElKkk~~~~~K~Q---KK~RRKg~g~~~~~l~~ 40 (189)
+...|+|..|+|++.++++|++ ||++||.+++..+....
T Consensus 111 ~~~~K~y~~E~K~~~~~l~K~~sel~Kl~KKs~~~~~~k~~~ 152 (223)
T cd07605 111 NKFEKDYKKEYKQKREDLDKARSELKKLQKKSQKSGTGKYQE 152 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCcccH
Confidence 4567999999999999999999 89999999874444433
No 9
>smart00721 BAR BAR domain.
Probab=94.32 E-value=0.66 Score=38.14 Aligned_cols=100 Identities=26% Similarity=0.311 Sum_probs=69.4
Q ss_pred hHHHHHHHHHhhhhhhHHHHH---HHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccC
Q psy10344 3 KKYKKARSELKKRSTDTLRLQ---KKVGRKGVVGRNADLQKALQEVNERKAILEEAEKKALRAALIEERSRYCVFVTFLK 79 (189)
Q Consensus 3 ke~Kr~r~ElKkk~~~~~K~Q---KK~RRKg~g~~~~~l~~~lqdvs~rq~elee~e~~~lR~ALlEERrRfCflV~~~~ 79 (189)
++.++.+...-++..|.+++. +++++++.......+.++-+++..-...++....+-..+...-.-.|.=+|+..+.
T Consensus 134 ~~~~~~~kk~~~~~lDyD~~~~kl~~~~~~~~~~~~~kl~~~e~el~~ak~~fe~~~~~l~~~l~~l~~~~~~~~~~~l~ 213 (239)
T smart00721 134 KEIKKARKKLERKLLDYDSARHKLKKAKKSKEKKKDEKLAKAEEELRKAKQEFEESNAQLVEELPQLVASRVDFFVNCLQ 213 (239)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHH
Confidence 445556666666667777766 34544433221124555666676667777777777777777777777778999999
Q ss_pred cchHHHHHhhhch-hHHHHHHHHH
Q psy10344 80 PVVDEEVAMLSEL-SHLQEVMVQL 102 (189)
Q Consensus 80 pVv~~ei~~~~e~-~~Lqe~l~~w 102 (189)
.|+.-++.+|..+ ..|++.++.|
T Consensus 214 ~~~~aq~~y~~~~~~~l~~l~~~l 237 (239)
T smart00721 214 ALIEAQLNFHRESYKLLQQLQQQL 237 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999985 7888887765
No 10
>KOG3771|consensus
Probab=91.25 E-value=4.7 Score=38.79 Aligned_cols=75 Identities=21% Similarity=0.263 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCcchHHHHHhhhchhHHHHHHHHHHHHhCCCC
Q psy10344 36 ADLQKALQEVNERKAILEEAEKKALRAALIEERSRYCVFVTFLKPVVDEEVAMLSELSHLQEVMVQLEKHTSDPY 110 (189)
Q Consensus 36 ~~l~~~lqdvs~rq~elee~e~~~lR~ALlEERrRfCflV~~~~pVv~~ei~~~~e~~~Lqe~l~~w~~~~~dP~ 110 (189)
..+.++=+++..-+.+.|+++.+-+-+.=+==-.|-=|||.-|..|+.-++.++.|++.|..+|.+......|+|
T Consensus 157 ~k~~KAeeEl~~Aq~~fE~lN~~L~eELP~L~~sRv~f~vp~Fqsl~~~q~vf~~Emskl~~~L~~v~~kl~dqh 231 (460)
T KOG3771|consen 157 AKLAKAEEELEKAQQVFEELNNELLEELPALYSSRVGFFVPTFQSLFNLQLVFHKEMSKLYKNLYDVLDKLFDQH 231 (460)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 345567778888888888888776666655557889999999999999999999999888888877777667663
No 11
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=88.93 E-value=4.4 Score=31.78 Aligned_cols=81 Identities=20% Similarity=0.276 Sum_probs=61.6
Q ss_pred hHHHHHHHHHhhhhhhHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCcch
Q psy10344 3 KKYKKARSELKKRSTDTLRLQKKVGRKGVVGRNADLQKALQEVNERKAILEEAEKKALRAALIEERSRYCVFVTFLKPVV 82 (189)
Q Consensus 3 ke~Kr~r~ElKkk~~~~~K~QKK~RRKg~g~~~~~l~~~lqdvs~rq~elee~e~~~lR~ALlEERrRfCflV~~~~pVv 82 (189)
+.++.++.++..+..++.++++++-+++..=..........++..+..+++.+.+..-++.-.++...+--+.++..+++
T Consensus 43 ~~~~~~~~~l~~~~~el~~~~~~l~~~~~~ls~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~i~~~i~~~v 122 (158)
T PF03938_consen 43 EKFKALQKELQAKQKELQKLQQKLQSQKATLSEEERQKRQQELQQKEQELQQFQQQAQQQLQQEEQELLQPIQKKINKAV 122 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTS----SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888888888844433222345567778899999999999999888888888888888888877776
Q ss_pred H
Q psy10344 83 D 83 (189)
Q Consensus 83 ~ 83 (189)
+
T Consensus 123 ~ 123 (158)
T PF03938_consen 123 E 123 (158)
T ss_dssp H
T ss_pred H
Confidence 5
No 12
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=88.39 E-value=4.3 Score=34.91 Aligned_cols=99 Identities=12% Similarity=0.136 Sum_probs=60.8
Q ss_pred hhHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCcchHHHHHhhhchhHHH
Q psy10344 17 TDTLRLQKKVGRKGVVGRNADLQKALQEVNERKAILEEAEKKALRAALIEERSRYCVFVTFLKPVVDEEVAMLSELSHLQ 96 (189)
Q Consensus 17 ~~~~K~QKK~RRKg~g~~~~~l~~~lqdvs~rq~elee~e~~~lR~ALlEERrRfCflV~~~~pVv~~ei~~~~e~~~Lq 96 (189)
.+++|++.|+ .|.. ..+..+++.++.-+.+++.-....|...=--|..|..||-+.+..+.+..-. .. ..+.
T Consensus 150 k~~eK~~~K~-~ka~----~~Y~~~v~~~~~~~~~~~~~m~~~~~~~Q~lEe~Ri~~~k~~l~~y~~~~~~-~~--~~~~ 221 (261)
T cd07648 150 KEIEKAEAKL-KKAQ----DEYKALVEKYNNIRADFETKMTDSCKRFQEIEESHLRQMKEFLASYAEVLSE-NH--SAVG 221 (261)
T ss_pred HHHHHHHHHH-HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cc--chHH
Confidence 3455666555 3322 3567788888888888888888888888888888888887776666442222 22 2333
Q ss_pred HHHHHHHHHhCCCCCCchHHHHHHHHhc
Q psy10344 97 EVMVQLEKHTSDPYSLPPASEQVMADMK 124 (189)
Q Consensus 97 e~l~~w~~~~~dP~kLP~~seqvI~dlk 124 (189)
+..+........- ..+.++..+|...+
T Consensus 222 ~~~e~~~~~~~~i-d~~~Di~~fv~~~g 248 (261)
T cd07648 222 QVHEEFKRQVDEL-TVDKLLRQFVESKG 248 (261)
T ss_pred HHHHHHHHHHHhC-CHHHHHHHHHHcCC
Confidence 3444443333322 23467778877765
No 13
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=88.16 E-value=9.2 Score=30.37 Aligned_cols=98 Identities=20% Similarity=0.251 Sum_probs=56.9
Q ss_pred hHHHHHHHHHhhhhhhHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCcch
Q psy10344 3 KKYKKARSELKKRSTDTLRLQKKVGRKGVVGRNADLQKALQEVNERKAILEEAEKKALRAALIEERSRYCVFVTFLKPVV 82 (189)
Q Consensus 3 ke~Kr~r~ElKkk~~~~~K~QKK~RRKg~g~~~~~l~~~lqdvs~rq~elee~e~~~lR~ALlEERrRfCflV~~~~pVv 82 (189)
++.++......++.-|.++.+.++.+-...+..+...+-++.....+..+.+.....+-... -.|.=+|...+..|+
T Consensus 131 ~~i~~~~kkr~~~~ldyd~~~~k~~k~~~~~~~~~~~~~l~~a~~~f~~~~~~l~~~l~~l~---~~~~~~l~~~l~~~i 207 (229)
T PF03114_consen 131 KEIKKLIKKREKKRLDYDSARSKLEKLRKKKSKSSKEEKLEEAKEEFEALNEELKEELPKLF---AKRQDILEPCLQSFI 207 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHTTSSBTHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 44566666666677777777755522221111111133444444444444444444444333 344556668888889
Q ss_pred HHHHHhhhch-hHHHHHHHHHH
Q psy10344 83 DEEVAMLSEL-SHLQEVMVQLE 103 (189)
Q Consensus 83 ~~ei~~~~e~-~~Lqe~l~~w~ 103 (189)
..++.+|..+ ..|++..+.|.
T Consensus 208 ~~q~~~~~~~~~~l~~l~~~l~ 229 (229)
T PF03114_consen 208 EAQLQYFQQLYQILEELQPQLA 229 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999884 88888887763
No 14
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=86.94 E-value=9.4 Score=29.12 Aligned_cols=86 Identities=24% Similarity=0.317 Sum_probs=42.3
Q ss_pred HHHHHHHHhhhhhhHHHHH---HHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCcc
Q psy10344 5 YKKARSELKKRSTDTLRLQ---KKVGRKGVVGRNADLQKALQEVNERKAILEEAEKKALRAALIEERSRYCVFVTFLKPV 81 (189)
Q Consensus 5 ~Kr~r~ElKkk~~~~~K~Q---KK~RRKg~g~~~~~l~~~lqdvs~rq~elee~e~~~lR~ALlEERrRfCflV~~~~pV 81 (189)
.+..+....++..+.+... +++++|+. ....+.++-+++..-....+.+..+-+.+.-.=.-.+.=.|+..+..+
T Consensus 96 ~~~~~k~~~~~~~~yd~~~~k~~~~~~~~~--~~~~l~~~~~~~~~ar~~y~~~~~~~~~~l~~~~~~~~~~~~~~L~~~ 173 (194)
T cd07307 96 IKKRRKKLDKARLDYDAAREKLKKLRKKKK--DSSKLAEAEEELQEAKEKYEELREELIEDLNKLEEKRKELFLSLLLSF 173 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3444444444444444444 22322222 223344444444444444444444444333221222222788888888
Q ss_pred hHHHHHhhhch
Q psy10344 82 VDEEVAMLSEL 92 (189)
Q Consensus 82 v~~ei~~~~e~ 92 (189)
++.++.++.++
T Consensus 174 ~~~q~~~~~~~ 184 (194)
T cd07307 174 IEAQSEFFKEV 184 (194)
T ss_pred HHHHHHHHHhH
Confidence 88888888875
No 15
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=84.28 E-value=15 Score=32.25 Aligned_cols=99 Identities=7% Similarity=0.056 Sum_probs=64.1
Q ss_pred hhHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCcchHHHHHhhhchhHHH
Q psy10344 17 TDTLRLQKKVGRKGVVGRNADLQKALQEVNERKAILEEAEKKALRAALIEERSRYCVFVTFLKPVVDEEVAMLSELSHLQ 96 (189)
Q Consensus 17 ~~~~K~QKK~RRKg~g~~~~~l~~~lqdvs~rq~elee~e~~~lR~ALlEERrRfCflV~~~~pVv~~ei~~~~e~~~Lq 96 (189)
.+++|++.|+ +|. ...+..+++.++.-+..+++-....|...=--|..|..||-+.+..+.+..-... ..+.
T Consensus 157 k~leK~~~k~-~ka----~~~Y~~~v~~l~~~~~~~~~~m~~~~~~~Q~~Ee~Ri~~~k~~l~~y~~~~s~~~---~~~~ 228 (269)
T cd07673 157 REIEKAAVKS-KKA----TESYKLYVEKYALAKADFEQKMTETAQKFQDIEETHLIRIKEIIGSYSNSVKEIH---IQIG 228 (269)
T ss_pred HHHHHHHHHH-HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---ChHH
Confidence 4455555555 222 2245678888888888999999999999999999999999988776655222221 3333
Q ss_pred HHHHHHHHHhCCCCCCchHHHHHHHHhc
Q psy10344 97 EVMVQLEKHTSDPYSLPPASEQVMADMK 124 (189)
Q Consensus 97 e~l~~w~~~~~dP~kLP~~seqvI~dlk 124 (189)
+..+........- ....++..+|...+
T Consensus 229 ~~~e~ir~~le~~-d~~~Di~~fi~~~g 255 (269)
T cd07673 229 QVHEEFINNMANT-TVESLIQKFAESKG 255 (269)
T ss_pred HHHHHHHHHHHhC-CHHHHHHHHHHhcC
Confidence 3334444333322 23478888888765
No 16
>cd07611 BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of the T-tubule network. The N-BAR domain of amphiphysin forms a curved dimer with a posit
Probab=82.65 E-value=27 Score=30.27 Aligned_cols=85 Identities=16% Similarity=0.103 Sum_probs=57.5
Q ss_pred hhhHHHHHHHhhhcCC---CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCcchHHHHHhhhch
Q psy10344 16 STDTLRLQKKVGRKGV---VGRNADLQKALQEVNERKAILEEAEKKALRAALIEERSRYCVFVTFLKPVVDEEVAMLSEL 92 (189)
Q Consensus 16 ~~~~~K~QKK~RRKg~---g~~~~~l~~~lqdvs~rq~elee~e~~~lR~ALlEERrRfCflV~~~~pVv~~ei~~~~e~ 92 (189)
..|-++++.++ +|=+ +.--..+-++-+++..-+.+.|.++..-.-+.=.===.|-=||+.+|.+++..++.++.|+
T Consensus 117 llDYD~~r~~~-~kL~~k~~kDe~KL~kAe~el~~Ak~~ye~lN~~Lk~ELP~L~~~Ri~f~~psFeal~~~q~~f~~E~ 195 (211)
T cd07611 117 LVDYDSARHHL-EALQTSKRKDEGRIAKAEEEFQKAQKVFEEFNVDLQEELPSLWSRRVGFYVNTFKNVSSLEAKFHKEI 195 (211)
T ss_pred HhhHHHHHHHH-HHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhHHHHHHHHHHHHHHH
Confidence 45666666444 2211 1122455678888888888888877654444333335788999999999999999999997
Q ss_pred hHHHHHHHH
Q psy10344 93 SHLQEVMVQ 101 (189)
Q Consensus 93 ~~Lqe~l~~ 101 (189)
+.+...|..
T Consensus 196 ~k~~~~l~~ 204 (211)
T cd07611 196 SVLCHKLYE 204 (211)
T ss_pred HHHHHHHHH
Confidence 666555543
No 17
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=81.99 E-value=18 Score=31.60 Aligned_cols=74 Identities=18% Similarity=0.253 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCcchHHHHHhhhc-hhHHHHHHHHHHHHhCCCCCCc
Q psy10344 36 ADLQKALQEVNERKAILEEAEKKALRAALIEERSRYCVFVTFLKPVVDEEVAMLSE-LSHLQEVMVQLEKHTSDPYSLP 113 (189)
Q Consensus 36 ~~l~~~lqdvs~rq~elee~e~~~lR~ALlEERrRfCflV~~~~pVv~~ei~~~~e-~~~Lqe~l~~w~~~~~dP~kLP 113 (189)
+.+..-|++..++..+-.+.....+.+.|-.|- -++..+..|++-++.||.. +++|++.++.++....+...-|
T Consensus 161 ~~l~eE~e~ae~k~e~~~e~~~~~M~~~l~~E~----e~~~~l~~lv~aQl~YH~~a~e~L~~l~~~l~~~~~~~~~kp 235 (244)
T cd07595 161 DALKDEYEEAELKLEQCRDALATDMYEFLAKEA----EIASYLIDLIEAQREYHRTALSVLEAVLPELQEQIEQSPSKP 235 (244)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 455666676666666666666666666444433 3455666778889999987 5999999999888877655444
No 18
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=81.14 E-value=32 Score=29.60 Aligned_cols=65 Identities=20% Similarity=0.283 Sum_probs=45.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCcchHHHHHhhhchhHHHHHH
Q psy10344 35 NADLQKALQEVNERKAILEEAEKKALRAALIEERSRYCVFVTFLKPVVDEEVAMLSELSHLQEVM 99 (189)
Q Consensus 35 ~~~l~~~lqdvs~rq~elee~e~~~lR~ALlEERrRfCflV~~~~pVv~~ei~~~~e~~~Lqe~l 99 (189)
...+-++-+++..-+.+.+.+...-..+.=.===.|-=||+..|.+++..+..++.|++.+...|
T Consensus 138 e~KL~kae~el~~Ak~~Ye~lN~~L~~ELP~L~~~ri~f~~p~F~sl~~~q~~F~~e~~~~~~~l 202 (211)
T cd07588 138 DQKLTKAEEELQQAKKVYEELNTELHEELPALYDSRIAFYVDTLQSIFAAESVFHKEIGKVNTKL 202 (211)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777777777777665544443222246778999999999999999999975554444
No 19
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=80.89 E-value=28 Score=30.27 Aligned_cols=83 Identities=7% Similarity=0.044 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCcchHHHHHhhhchhHHHHHHHHHHHHhCCCCCCchHHH
Q psy10344 38 LQKALQEVNERKAILEEAEKKALRAALIEERSRYCVFVTFLKPVVDEEVAMLSELSHLQEVMVQLEKHTSDPYSLPPASE 117 (189)
Q Consensus 38 l~~~lqdvs~rq~elee~e~~~lR~ALlEERrRfCflV~~~~pVv~~ei~~~~e~~~Lqe~l~~w~~~~~dP~kLP~~se 117 (189)
+..+++..+..+.++++.....|...=--|..|..||-+.+.-+.+...... ..+.+..+.........+ ...++.
T Consensus 166 y~~~~~ky~~~~~~~~~~m~~~~~~~Q~~Ee~Ri~~lk~~L~~~~~~~~~~~---~~~~~~~e~~~~~l~~id-~~~Di~ 241 (261)
T cd07674 166 LRGSVEKYNRARGDFEQKMLESAQKFQDIEETHLRHMKLLIKGYSHSVEDTH---VQIGQVHEEFKQNVENVG-VENLIR 241 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHhCC-HHHHHH
Confidence 4556777777788888888888888888899999999998776643221211 224444444444444333 457788
Q ss_pred HHHHHhc
Q psy10344 118 QVMADMK 124 (189)
Q Consensus 118 qvI~dlk 124 (189)
.+|...+
T Consensus 242 ~fv~~~~ 248 (261)
T cd07674 242 KFAESKG 248 (261)
T ss_pred HHHHhCC
Confidence 8888775
No 20
>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 3 (Bin3) is widely expressed in many tissues except in the brain. It plays roles in regulating filamentous actin localization and in cell division. In humans, the Bin3 gene is located in chromosome 8p21.3, a region that is implicated in cancer suppression. Homozygous inactivation of the Bin3 gene in mice led to the development of cataracts and an increased likelihood of lymphomas during aging, suggesting a role for Bin3 in lens development and cancer suppression. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=76.30 E-value=51 Score=28.63 Aligned_cols=78 Identities=22% Similarity=0.224 Sum_probs=54.6
Q ss_pred hhhHHHHH---HHhhhcCCCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCcchHHHHHhhhc
Q psy10344 16 STDTLRLQ---KKVGRKGVVG-RNADLQKALQEVNERKAILEEAEKKALRAALIEERSRYCVFVTFLKPVVDEEVAMLSE 91 (189)
Q Consensus 16 ~~~~~K~Q---KK~RRKg~g~-~~~~l~~~lqdvs~rq~elee~e~~~lR~ALlEERrRfCflV~~~~pVv~~ei~~~~e 91 (189)
..|.++++ +|+.-|...+ ....+.++-+++..-+.+.+.+...-..+.=.==-.|.=||+..|.+|+..++.++.+
T Consensus 121 l~DYD~~r~~~~kl~~K~~k~~~~~KL~kae~el~~Ak~~ye~~N~~L~~ELP~l~~~r~~f~~p~Fqsl~~~Ql~f~~e 200 (225)
T cd07590 121 LQEYERLQAKVEKLAEKEKTGPNLAKLEQAEKALAAARADFEKQNIKLLEELPKFYNGRTDYFQPCFEALIKSQVLYYSQ 200 (225)
T ss_pred HHHHHHHHHHHHHHHhCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHHHHHHHHHHHHHHH
Confidence 35566666 3332222221 1245678888888889999888877666554444677889999999999999999998
Q ss_pred hh
Q psy10344 92 LS 93 (189)
Q Consensus 92 ~~ 93 (189)
+.
T Consensus 201 ~~ 202 (225)
T cd07590 201 ST 202 (225)
T ss_pred HH
Confidence 63
No 21
>cd07612 BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 2 (Bin2) is a BAR domain containing protein that is mainly expressed in hematopoietic cells. It is upregulated during granulocyte differentiation and is thought to function primarily in this lineage. The BAR domain of Bin2 is closely related to the BAR domains of amphiphysins, which function primarily in endocytosis and other membrane remodeling events. Amphiphysins contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Unlike amphiphysins, Bin2 does not appear to contain a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (
Probab=74.03 E-value=59 Score=28.23 Aligned_cols=65 Identities=22% Similarity=0.300 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCcchHHHHHhhhchhHHHHHHH
Q psy10344 36 ADLQKALQEVNERKAILEEAEKKALRAALIEERSRYCVFVTFLKPVVDEEVAMLSELSHLQEVMV 100 (189)
Q Consensus 36 ~~l~~~lqdvs~rq~elee~e~~~lR~ALlEERrRfCflV~~~~pVv~~ei~~~~e~~~Lqe~l~ 100 (189)
..+-++-+++..-+.+.|.++..-.-+.=.===.|-=||+..|.+++..+..++.|++.+-..|.
T Consensus 139 ~KL~kAe~el~~Ak~~ye~lN~~L~~ELP~L~~~Ri~f~~psFeal~~~q~~F~~E~~k~~~~l~ 203 (211)
T cd07612 139 AKIAKAEEEFNRAQVVFEDINRELREELPILYDSRIGCYVTVFQNISNLRDTFYKEMSKLNHDLY 203 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577888888888888888876655544334578899999999999999999999765554443
No 22
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=63.88 E-value=78 Score=27.17 Aligned_cols=65 Identities=17% Similarity=0.154 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCcchHHHHHhhhch-hHHHHHHH
Q psy10344 36 ADLQKALQEVNERKAILEEAEKKALRAALIEERSRYCVFVTFLKPVVDEEVAMLSEL-SHLQEVMV 100 (189)
Q Consensus 36 ~~l~~~lqdvs~rq~elee~e~~~lR~ALlEERrRfCflV~~~~pVv~~ei~~~~e~-~~Lqe~l~ 100 (189)
..+.++-+++..-..+.+.+...-..+.=.==-.|+=||+..+..|+.-++.++.++ +.|.+..+
T Consensus 144 ~kL~kae~el~~a~~~Ye~lN~~Lk~ELP~l~~~r~~~l~~~f~s~~~iQ~~~~~~~y~~l~~~~~ 209 (224)
T cd07591 144 TKLPRAEKELDEAKEVYETLNDQLKTELPQLVDLRIPYLDPSFEAFVKIQLRFFTEGYERLAQVQR 209 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555555555555555544332222211124566699999999999999999885 56665553
No 23
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=61.11 E-value=65 Score=28.18 Aligned_cols=65 Identities=17% Similarity=0.282 Sum_probs=38.5
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHhhhcCCCCCch-HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhhhhhhh
Q psy10344 4 KYKKARSELKKRSTDTLRLQKKVGRKGVVGRNA-DLQKALQEVNERKAILEE--AEKKALRAALIEERSRYCVF 74 (189)
Q Consensus 4 e~Kr~r~ElKkk~~~~~K~QKK~RRKg~g~~~~-~l~~~lqdvs~rq~elee--~e~~~lR~ALlEERrRfCfl 74 (189)
+|-.+++.+++|-....|+ |+.++.++ .+|++++++..-..--++ ..-+-+...|..|++||=..
T Consensus 130 e~~qAq~~~~~K~~~~~rl------k~s~~i~~~KvdeA~~~l~eA~~~e~~l~~k~~rIs~nm~~E~~rf~~~ 197 (230)
T cd07625 130 ELIQAQQNTKSKQEAARRL------KAKRDINPLKVDEAIRQLEEATKHEHDLSLKLKRITGNMLIERKEWTDW 197 (230)
T ss_pred HHHHHHHHHHHHHHHHHHH------hcCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666655555432 34455445 557777776643333332 34556778889999988543
No 24
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=61.09 E-value=32 Score=29.68 Aligned_cols=33 Identities=21% Similarity=0.172 Sum_probs=25.6
Q ss_pred hhhhccCcchHHHHHhhhc-hhHHHHHHHHHHHH
Q psy10344 73 VFVTFLKPVVDEEVAMLSE-LSHLQEVMVQLEKH 105 (189)
Q Consensus 73 flV~~~~pVv~~ei~~~~e-~~~Lqe~l~~w~~~ 105 (189)
-++..|..||+-++.||.. .+.|++....|-..
T Consensus 178 e~~~~L~~lv~AQl~Yh~q~~e~L~~l~~~~~~~ 211 (215)
T cd07593 178 DQYRDLTDLLDAELDYHQQSLDVLREVRQSWPSK 211 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 4556677788889999988 58888888888543
No 25
>PRK10780 periplasmic chaperone; Provisional
Probab=59.99 E-value=77 Score=25.58 Aligned_cols=28 Identities=29% Similarity=0.347 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHhhhhhhHHHHHHHhhhc
Q psy10344 2 LKKYKKARSELKKRSTDTLRLQKKVGRK 29 (189)
Q Consensus 2 ake~Kr~r~ElKkk~~~~~K~QKK~RRK 29 (189)
-++++.++.|++.+..++.+...+..++
T Consensus 49 e~~~~~~q~el~~~~~elq~~~~~~q~~ 76 (165)
T PRK10780 49 ENEFKGRASELQRMETDLQAKMQKLQRD 76 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3577888888888888888777777444
No 26
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=59.14 E-value=21 Score=28.43 Aligned_cols=85 Identities=22% Similarity=0.269 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCcchHHHHHhhh--------chhHHHHHHHHHHHHhCC
Q psy10344 37 DLQKALQEVNERKAILEEAEKKALRAALIEERSRYCVFVTFLKPVVDEEVAMLS--------ELSHLQEVMVQLEKHTSD 108 (189)
Q Consensus 37 ~l~~~lqdvs~rq~elee~e~~~lR~ALlEERrRfCflV~~~~pVv~~ei~~~~--------e~~~Lqe~l~~w~~~~~d 108 (189)
.....+..+.++..+|+.. .-....-+-+=|+|+--|..++-.|+. -+..+. +-+.|...|+.+.....+
T Consensus 48 ~~~~~l~~i~~~l~~L~~~-~~~~~~rl~~~r~r~~~L~hR~l~v~~-~~eilr~~g~~l~~eEe~L~~~le~l~~~l~~ 125 (141)
T PF13874_consen 48 QHRERLKEINDKLEELQKH-DLETSARLEEARRRHQELSHRLLRVLR-KQEILRNRGYALSPEEEELRKRLEALEAQLNA 125 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-------------------------
T ss_pred HHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 3456888899998888554 666677788889999988888766653 222322 236888999999999999
Q ss_pred CCCCchHHHHHHHHh
Q psy10344 109 PYSLPPASEQVMADM 123 (189)
Q Consensus 109 P~kLP~~seqvI~dl 123 (189)
|+.+....+.+...|
T Consensus 126 p~~~~~rl~El~a~l 140 (141)
T PF13874_consen 126 PAQLKGRLNELWAQL 140 (141)
T ss_dssp ---------------
T ss_pred chhHHHHHHHHHHHh
Confidence 999998887776543
No 27
>cd07613 BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. Endophilin-A1 (or endophilin-1) is also referred to as SH3P4 (SH3 domain containing protein 4) or SH3GL2 (SH3 domain containing Grb2-like protein 2). It is localized in presynaptic nerve terminals. It plays many roles i
Probab=57.85 E-value=1.1e+02 Score=26.68 Aligned_cols=36 Identities=25% Similarity=0.325 Sum_probs=29.5
Q ss_pred hhhhccCcchHHHHHhhhc-hhHHHHHHHHHHHHhCC
Q psy10344 73 VFVTFLKPVVDEEVAMLSE-LSHLQEVMVQLEKHTSD 108 (189)
Q Consensus 73 flV~~~~pVv~~ei~~~~e-~~~Lqe~l~~w~~~~~d 108 (189)
-.|..|..||+-++.||.. .+.|++..+.|.+-..|
T Consensus 186 e~~~~L~~fveAQl~Yh~qa~eiL~~l~~~l~~~~~~ 222 (223)
T cd07613 186 EQVSQLSALVQAQLEYHKQATQILQQVTVKLEDRIRE 222 (223)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4556778888999999998 59999999999876654
No 28
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=57.62 E-value=38 Score=27.79 Aligned_cols=58 Identities=29% Similarity=0.449 Sum_probs=44.5
Q ss_pred hHHHHHHHHHhhhhhhHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q psy10344 3 KKYKKARSELKKRSTDTLRLQKKVGRKGVVGRNADLQKALQEVNERKAILEEAEKKALRAALIEERSRYCVFVT 76 (189)
Q Consensus 3 ke~Kr~r~ElKkk~~~~~K~QKK~RRKg~g~~~~~l~~~lqdvs~rq~elee~e~~~lR~ALlEERrRfCflV~ 76 (189)
+.|-++|+||-..-.++-++|-. +-.+++.++.|..+|++..+ .|++ +|=.+|=||..
T Consensus 8 rny~~a~aeL~~a~~~I~~~q~r------------~a~a~~~~~~r~seldqA~~-~~~e---ae~k~~~~~a~ 65 (136)
T PF11570_consen 8 RNYEAARAELDQADEDIATLQER------------QASAEQALNGRRSELDQANK-KVKE---AEIKQDEFFAN 65 (136)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHH-HHHH---HHHHHCCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHhhHHHHHHHHHH-HHHH---HHhcccccccC
Confidence 67889999998877777766622 23467789999999999876 5777 78888887764
No 29
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=52.63 E-value=1.5e+02 Score=25.35 Aligned_cols=61 Identities=20% Similarity=0.237 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhhhccCcchHHHHHhhhch-hHHHH
Q psy10344 36 ADLQKALQEVNERKAILEEAEKK-ALRAALIEERSRYCVFVTFLKPVVDEEVAMLSEL-SHLQE 97 (189)
Q Consensus 36 ~~l~~~lqdvs~rq~elee~e~~-~lR~ALlEERrRfCflV~~~~pVv~~ei~~~~e~-~~Lqe 97 (189)
..+.++-+++..-..-.+...-+ -+.=..|++|+|| -|+..+..+++-++++|+.. +.|.+
T Consensus 136 ~~~~ea~~~l~~~R~~F~~~~ldyv~~ln~~q~kKk~-e~le~ll~~m~A~~tFF~qG~ell~~ 198 (202)
T cd07606 136 EILAAAEEDLGTTRSAFETARFDLMNRLHAADARKRV-EFLERLSGSMDAHLAFFKSGYELLRQ 198 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555553333333222222 1233458999999 66777788889899999874 55543
No 30
>KOG1595|consensus
Probab=51.83 E-value=12 Score=36.63 Aligned_cols=46 Identities=15% Similarity=0.062 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCcchHHHHHhhhc
Q psy10344 40 KALQEVNERKAILEEAEKKALRAALIEERSRYCVFVTFLKPVVDEEVAMLSE 91 (189)
Q Consensus 40 ~~lqdvs~rq~elee~e~~~lR~ALlEERrRfCflV~~~~pVv~~ei~~~~e 91 (189)
+|.+.|.+-+--=+.+....|++- .==+||||||... .+|+.++..
T Consensus 254 EyaHgvfEcwLHPa~YRT~~CkDg-~~C~RrvCfFAH~-----~eqLR~l~~ 299 (528)
T KOG1595|consen 254 EYAHGVFECWLHPARYRTRKCKDG-GYCPRRVCFFAHS-----PEQLRPLPP 299 (528)
T ss_pred ccccceehhhcCHHHhccccccCC-CCCccceEeeecC-----hHHhcccCC
Confidence 345555444444445555555554 2334699999987 778877764
No 31
>KOG4403|consensus
Probab=51.79 E-value=75 Score=31.09 Aligned_cols=85 Identities=16% Similarity=0.141 Sum_probs=42.4
Q ss_pred HHHHhhhhhhHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCcchHHHHHh
Q psy10344 9 RSELKKRSTDTLRLQKKVGRKGVVGRNADLQKALQEVNERKAILEEAEKKALRAALIEERSRYCVFVTFLKPVVDEEVAM 88 (189)
Q Consensus 9 r~ElKkk~~~~~K~QKK~RRKg~g~~~~~l~~~lqdvs~rq~elee~e~~~lR~ALlEERrRfCflV~~~~pVv~~ei~~ 88 (189)
..+++.+.+..+|++||- ----|..+..-...+.+|..++-+......+ -.+++-||---=--+..+|.| .|.+
T Consensus 360 ekql~~Ake~~eklkKKr-ssv~gtl~vahgsslDdVD~kIleak~al~e--vtt~lrErl~RWqQIE~lcGf---~iv~ 433 (575)
T KOG4403|consen 360 EKQLKEAKEMAEKLKKKR-SSVFGTLHVAHGSSLDDVDHKILEAKSALSE--VTTLLRERLHRWQQIESLCGF---QIVN 433 (575)
T ss_pred HHHHHHHHHHHHHHHHhh-cchheeeeeccccchhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhCc---eeec
Confidence 345555556666666553 1100111111123466666666554332211 123344443333446677888 7777
Q ss_pred hhchhHHHHHH
Q psy10344 89 LSELSHLQEVM 99 (189)
Q Consensus 89 ~~e~~~Lqe~l 99 (189)
.+++.+|...|
T Consensus 434 nngl~~l~~sl 444 (575)
T KOG4403|consen 434 NNGLPSLNRSL 444 (575)
T ss_pred CCCchHHHHHH
Confidence 77777777666
No 32
>cd07615 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins localized at synapses that interacts with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated e
Probab=48.76 E-value=65 Score=28.14 Aligned_cols=32 Identities=13% Similarity=0.244 Sum_probs=25.0
Q ss_pred ccCcchHHHHHhhhc-hhHHHHHHHHHHHHhCC
Q psy10344 77 FLKPVVDEEVAMLSE-LSHLQEVMVQLEKHTSD 108 (189)
Q Consensus 77 ~~~pVv~~ei~~~~e-~~~Lqe~l~~w~~~~~d 108 (189)
.+..||+-++.||.. .+.|++..+.+++-..|
T Consensus 190 ~L~~lv~AQl~Yh~~a~eiL~~l~~~l~~~~~~ 222 (223)
T cd07615 190 QLSVLIEAALDYHRQSTEILEDLQSKLQNRIST 222 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455677889999988 58999998888876554
No 33
>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation.
Probab=48.68 E-value=1.9e+02 Score=25.55 Aligned_cols=67 Identities=10% Similarity=0.244 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCcchHHHHHhhhc-hhHHHHHHHHHHHHhC
Q psy10344 37 DLQKALQEVNERKAILEEAEKKALRAALIEERSRYCVFVTFLKPVVDEEVAMLSE-LSHLQEVMVQLEKHTS 107 (189)
Q Consensus 37 ~l~~~lqdvs~rq~elee~e~~~lR~ALlEERrRfCflV~~~~pVv~~ei~~~~e-~~~Lqe~l~~w~~~~~ 107 (189)
.+++.++....+..+.++.....+=..|.+| --++..++.+|+-++.||.. .+.|++.+|.++.+..
T Consensus 164 ~l~ee~e~a~~k~E~~kD~~~~dm~~~l~~e----~e~~~~l~~lv~aQ~eYHr~a~e~Le~~~p~i~~~~~ 231 (246)
T cd07618 164 MLKEEMDEAGNKVEQCKDQLAADMYNFASKE----GEYAKFFVLLLEAQADYHRKALAVIEKVLPEIQAHQD 231 (246)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555554444344444555443 23455666677888999887 5899999988877764
No 34
>cd07681 F-BAR_PACSIN3 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 3 or Syndapin III is expressed ubiquitously and regulates glucose uptake in adipocytes through its role in GLUT1 trafficking. It also modulates the subcellular localization and stimulus-specific function of the cation channel TRPV4. PACSIN 3 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to
Probab=46.81 E-value=1.9e+02 Score=25.74 Aligned_cols=70 Identities=24% Similarity=0.357 Sum_probs=48.8
Q ss_pred hHHHHHHHhhhcCCCC---CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCcchHHHHHhh
Q psy10344 18 DTLRLQKKVGRKGVVG---RNADLQKALQEVNERKAILEEAEKKALRAALIEERSRYCVFVTFLKPVVDEEVAML 89 (189)
Q Consensus 18 ~~~K~QKK~RRKg~g~---~~~~l~~~lqdvs~rq~elee~e~~~lR~ALlEERrRfCflV~~~~pVv~~ei~~~ 89 (189)
++.|++-|+ +|.+.. ....+.+++++++.=...+++.-...|-..--.|+.|.+||-+.+..+ ...+.+.
T Consensus 169 q~~K~~~kl-eK~~~~~~k~~~~Y~~~v~~L~~~~~~w~e~m~~~~d~~Q~~EeeRi~flK~~L~~~-~~~l~~~ 241 (258)
T cd07681 169 QLRKLQDRV-EKCTQEAEKAKEQYEKALEELNRYNPRYMEDMEQAFEICQEAERKRLCFFKEMLLDL-HQHLDLS 241 (258)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhh
Confidence 345555555 333321 122345678888888888999999999999999999999999987666 3344443
No 35
>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=44.19 E-value=2e+02 Score=25.28 Aligned_cols=60 Identities=12% Similarity=0.214 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCcchHHHHHhhhc-hhHHHHHHH
Q psy10344 36 ADLQKALQEVNERKAILEEAEKKALRAALIEERSRYCVFVTFLKPVVDEEVAMLSE-LSHLQEVMV 100 (189)
Q Consensus 36 ~~l~~~lqdvs~rq~elee~e~~~lR~ALlEERrRfCflV~~~~pVv~~ei~~~~e-~~~Lqe~l~ 100 (189)
..+...++...++...-.+.....+.+. ++. - -++..++.|++-++.||.. ...|.+.++
T Consensus 180 ~~~~~e~E~aEdef~~a~E~a~~~M~~i-l~~-~---e~i~~L~~fv~AQl~Yh~~~~e~L~~l~~ 240 (242)
T cd07600 180 EAARVEVETAEDEFVSATEEAVELMKEV-LDN-P---EPLQLLKELVKAQLAYHKTAAELLEELLS 240 (242)
T ss_pred cchHHHHHHHHHHHHHhHHHHHHHHHHH-Hhh-h---HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444445544444444444334444333 443 2 2688888899999999976 467766554
No 36
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=44.09 E-value=82 Score=25.10 Aligned_cols=42 Identities=19% Similarity=0.216 Sum_probs=22.8
Q ss_pred HHHHHHHHHhhhhhhh-----hhhccCcchHHHHHhhhchhHHHHHHHHHHHH
Q psy10344 58 KALRAALIEERSRYCV-----FVTFLKPVVDEEVAMLSELSHLQEVMVQLEKH 105 (189)
Q Consensus 58 ~~lR~ALlEERrRfCf-----lV~~~~pVv~~ei~~~~e~~~Lqe~l~~w~~~ 105 (189)
+-+...+.+|-.||=. |-..+..++..++.++ +..++.|...
T Consensus 169 ~~i~~~~~~El~~f~~~~~~dlk~~l~~~~~~qi~~~------~~~~~~W~~~ 215 (218)
T cd07596 169 EEISERLKEELKRFHEERARDLKAALKEFARLQVQYA------EKIAEAWESL 215 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhh
Confidence 3445566666666643 4455555555555544 4455566654
No 37
>PF06409 NPIP: Nuclear pore complex interacting protein (NPIP); InterPro: IPR009443 This family consists of a series of primate specific nuclear pore complex interacting protein (NPIP) sequences. The function of this family is unknown but is well conserved from African apes to humans [].
Probab=44.06 E-value=57 Score=29.35 Aligned_cols=51 Identities=18% Similarity=0.189 Sum_probs=25.7
Q ss_pred HHHHHhhhchhHHHHHHHHHHHHhCCC------CCCchHHHHHHHHhcCCCCcccCCCCCC
Q psy10344 83 DEEVAMLSELSHLQEVMVQLEKHTSDP------YSLPPASEQVMADMKGSDTTWLLPSPTS 137 (189)
Q Consensus 83 ~~ei~~~~e~~~Lqe~l~~w~~~~~dP------~kLP~~seqvI~dlk~s~~~~~~~~p~~ 137 (189)
++.+.|..--.+....++-|-.+|+|| ++-||-+ +..-..|++|+.+|||-
T Consensus 191 ~nwvrm~Aaeh~hssgl~~spyL~A~~l~~~M~~~ppppt----~~~~~~~~~l~~~t~p~ 247 (265)
T PF06409_consen 191 DNWVRMAAAEHHHSSGLPYSPYLMAEALQREMGHQPPPPT----QQHSITDNSLSLKTPPE 247 (265)
T ss_pred HHHHHHHHHHhccCCCCcCchHHhHHHHHHhhCCCCcCCc----ccccccCCccCcCCCcc
Confidence 444544433222333566666677654 3344444 22223446777777764
No 38
>cd07614 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated
Probab=44.03 E-value=92 Score=27.17 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=29.2
Q ss_pred hhhhhhccCcchHHHHHhhhc-hhHHHHHHHHHHHHhCC
Q psy10344 71 YCVFVTFLKPVVDEEVAMLSE-LSHLQEVMVQLEKHTSD 108 (189)
Q Consensus 71 fCflV~~~~pVv~~ei~~~~e-~~~Lqe~l~~w~~~~~d 108 (189)
.--++..+..||+-++.||.. .+.|++....+++-..|
T Consensus 184 e~e~~~~L~~lveAQl~Yh~qa~eiL~~l~~~l~~~~~~ 222 (223)
T cd07614 184 DIEQVSQLSALVDAQLDYHRQAVQILDELAEKLKRRMRE 222 (223)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345566777888999999988 58888888888776554
No 39
>COG1422 Predicted membrane protein [Function unknown]
Probab=43.40 E-value=20 Score=31.07 Aligned_cols=37 Identities=16% Similarity=0.251 Sum_probs=18.3
Q ss_pred HhhhhhhHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHHHHHHH
Q psy10344 12 LKKRSTDTLRLQKKVGRKGVVGRNADLQKALQEVNERKAILEEA 55 (189)
Q Consensus 12 lKkk~~~~~K~QKK~RRKg~g~~~~~l~~~lqdvs~rq~elee~ 55 (189)
+++..+++.+-.++++|+|- +..++.++++|.|+-..
T Consensus 77 ~qk~m~efq~e~~eA~~~~d-------~~~lkkLq~~qmem~~~ 113 (201)
T COG1422 77 LQKMMKEFQKEFREAQESGD-------MKKLKKLQEKQMEMMDD 113 (201)
T ss_pred HHHHHHHHHHHHHHHHHhCC-------HHHHHHHHHHHHHHHHH
Confidence 34445566666667744443 23344444445444443
No 40
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=40.95 E-value=2.3e+02 Score=28.70 Aligned_cols=54 Identities=22% Similarity=0.329 Sum_probs=39.5
Q ss_pred hHHHHHHHHHhhhhhhHHHHHHHhh------hcCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q psy10344 3 KKYKKARSELKKRSTDTLRLQKKVG------RKGVVGRNADLQKALQEVNERKAILEEAEK 57 (189)
Q Consensus 3 ke~Kr~r~ElKkk~~~~~K~QKK~R------RKg~g~~~~~l~~~lqdvs~rq~elee~e~ 57 (189)
.|+|+.|.|+|.|-+.+..+++.++ |.+.. -...|..++..+.+|-.-||+-..
T Consensus 552 ~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~-~~e~L~~aL~amqdk~~~LE~sLs 611 (697)
T PF09726_consen 552 SELKKLRRELKQKEEQIRELESELQELRKYEKESEK-DTEVLMSALSAMQDKNQHLENSLS 611 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5899999999999888888886552 22221 235677888899999888887543
No 41
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog
Probab=40.33 E-value=1.5e+02 Score=26.28 Aligned_cols=43 Identities=16% Similarity=0.210 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCcc
Q psy10344 39 QKALQEVNERKAILEEAEKKALRAALIEERSRYCVFVTFLKPV 81 (189)
Q Consensus 39 ~~~lqdvs~rq~elee~e~~~lR~ALlEERrRfCflV~~~~pV 81 (189)
...+++++.-...+++-....|-..=-.|..|.+||.+.+-.+
T Consensus 192 ~~~l~~ln~~~~~y~~~m~~vfd~~Q~~Ee~Ri~flk~~l~~~ 234 (258)
T cd07680 192 EKVLDDVGKTTPQYMENMEQVFEQCQQFEEKRLVFLKEVLLDI 234 (258)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777777888888888888888888999999999885544
No 42
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=39.50 E-value=1.7e+02 Score=25.43 Aligned_cols=65 Identities=20% Similarity=0.196 Sum_probs=39.6
Q ss_pred hhHHHHHHHhhhcCCC--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCcc
Q psy10344 17 TDTLRLQKKVGRKGVV--GRNADLQKALQEVNERKAILEEAEKKALRAALIEERSRYCVFVTFLKPV 81 (189)
Q Consensus 17 ~~~~K~QKK~RRKg~g--~~~~~l~~~lqdvs~rq~elee~e~~~lR~ALlEERrRfCflV~~~~pV 81 (189)
.+++|++.|+.++.+. .....+..+++.++.-+..+++.....|...=--|..|--||-+.+..+
T Consensus 168 ~eleK~~~k~~k~~~~~~~~~~~Y~~~l~~~n~~~~~y~~~m~~~~~~~Q~lEe~Ri~~lk~~l~~y 234 (258)
T cd07655 168 DQVKKLQDKVEKCKQEVSKTKDKYEKALEDLNKYNPRYMEDMEQVFDKCQEFEEKRLDFFKEILLSY 234 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777666443321 1112334556666666667777777777777777777777777765544
No 43
>PRK10722 hypothetical protein; Provisional
Probab=38.19 E-value=48 Score=29.68 Aligned_cols=43 Identities=33% Similarity=0.374 Sum_probs=28.1
Q ss_pred HHHHHHHHHhhhhhhhhhhccCcchHHHHHhhhc-hhHHHHHHHHHHH
Q psy10344 58 KALRAALIEERSRYCVFVTFLKPVVDEEVAMLSE-LSHLQEVMVQLEK 104 (189)
Q Consensus 58 ~~lR~ALlEERrRfCflV~~~~pVv~~ei~~~~e-~~~Lqe~l~~w~~ 104 (189)
+.+.=+|-|||.||-.|..- .|.++.-+.+ ..+||.-|++.++
T Consensus 154 Q~l~l~LaeEr~Ry~rLQq~----sD~qlD~lrqq~~~Lq~~L~~t~r 197 (247)
T PRK10722 154 QALQLALAEERQRYQKLQQS----SDSELDALRQQQQRLQYQLELTTR 197 (247)
T ss_pred hHHHHhHHHHHHHHHHHhhc----cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788999999988432 3567777766 4555555544443
No 44
>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra
Probab=37.85 E-value=2.7e+02 Score=24.12 Aligned_cols=37 Identities=19% Similarity=0.289 Sum_probs=29.8
Q ss_pred hhhhhccCcchHHHHHhhhc-hhHHHHHHHHHHHHhCC
Q psy10344 72 CVFVTFLKPVVDEEVAMLSE-LSHLQEVMVQLEKHTSD 108 (189)
Q Consensus 72 CflV~~~~pVv~~ei~~~~e-~~~Lqe~l~~w~~~~~d 108 (189)
--++..+..||+-++.||.. ...|.+..+.|++...|
T Consensus 185 ~e~~~~L~~lveAQl~Yh~~~~e~L~~l~~~L~~~~~~ 222 (223)
T cd07592 185 VEQVSQLSALVEAQLDYHRQSAEILEELQSKLQERISE 222 (223)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34566777888889999988 58999999999877655
No 45
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=37.34 E-value=2.9e+02 Score=29.30 Aligned_cols=84 Identities=21% Similarity=0.310 Sum_probs=50.5
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhhhhhhhh---hccCcchHHHHHhhhch----hHHHHHHHH
Q psy10344 31 VVGRNADLQKALQEVNERKAILEEAEK--KALRAALIEERSRYCVFV---TFLKPVVDEEVAMLSEL----SHLQEVMVQ 101 (189)
Q Consensus 31 ~g~~~~~l~~~lqdvs~rq~elee~e~--~~lR~ALlEERrRfCflV---~~~~pVv~~ei~~~~e~----~~Lqe~l~~ 101 (189)
+.|++|++++.++.+..-+.++++.++ .+|+.+|.+-|.+..-+. ..+....+ +|.++..+ .+||+.=..
T Consensus 176 P~GrnP~iNq~l~klkq~~~ei~e~eke~a~yh~lLe~r~~~~~rl~~l~~elr~~~~-~i~~~~~~v~l~~~lqE~k~L 254 (984)
T COG4717 176 PSGRNPQINQLLEKLKQERNEIDEAEKEYATYHKLLESRRAEHARLAELRSELRADRD-HIRALRDAVELWPRLQEWKQL 254 (984)
T ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHHHH
Confidence 446799999999999988888888766 478877776555544444 44444422 44444442 233333333
Q ss_pred HHHHh---CCCCCCchH
Q psy10344 102 LEKHT---SDPYSLPPA 115 (189)
Q Consensus 102 w~~~~---~dP~kLP~~ 115 (189)
=++++ .+|-..|++
T Consensus 255 eqel~~~~~e~~~fP~D 271 (984)
T COG4717 255 EQELTRRREELATFPRD 271 (984)
T ss_pred HHHhccchhhhccCCch
Confidence 33444 355556655
No 46
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=36.17 E-value=3.9e+02 Score=27.08 Aligned_cols=44 Identities=7% Similarity=0.092 Sum_probs=31.1
Q ss_pred HHHHhhhhhhhhhhccCcch--HHHHHhhhc--hhHHH-HHHHHHHHHh
Q psy10344 63 ALIEERSRYCVFVTFLKPVV--DEEVAMLSE--LSHLQ-EVMVQLEKHT 106 (189)
Q Consensus 63 ALlEERrRfCflV~~~~pVv--~~ei~~~~e--~~~Lq-e~l~~w~~~~ 106 (189)
+|..+=+-|=-.+.++-+++ .-+++++.+ ++.+. +..+.|.++-
T Consensus 310 ~l~~~i~s~~~k~~~~~~~I~ka~~~sIi~~gv~~r~n~~L~~rW~~L~ 358 (683)
T PF08580_consen 310 KLSKQIESKEKKKSHYFPAIYKARVLSIIDKGVADRLNADLAQRWLELK 358 (683)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhhhhHHHHhhHHHHHHHHHHH
Confidence 35666666666777788887 666677765 36777 7888888885
No 47
>KOG3684|consensus
Probab=35.89 E-value=1.5e+02 Score=29.02 Aligned_cols=29 Identities=17% Similarity=0.282 Sum_probs=20.2
Q ss_pred HHHHhhhc-hhHHHHHHHHHHHHhCCCCCC
Q psy10344 84 EEVAMLSE-LSHLQEVMVQLEKHTSDPYSL 112 (189)
Q Consensus 84 ~ei~~~~e-~~~Lqe~l~~w~~~~~dP~kL 112 (189)
..|+++.+ ++.|++-|..+-.+++.|..-
T Consensus 448 ~qI~~Le~kl~~l~~~l~s~~~~~~~~~~~ 477 (489)
T KOG3684|consen 448 KQIDTLESKLEALTASLSSLPGLLAQPLRS 477 (489)
T ss_pred HHHHHHHHHHHHHHHHHHhCchhhcCcccc
Confidence 36666665 688888887777777766443
No 48
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=34.86 E-value=2.9e+02 Score=23.62 Aligned_cols=75 Identities=12% Similarity=0.219 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCcchHHHHHhhhc-hhH--HHHHHHHHHHHhCCCCCCc
Q psy10344 37 DLQKALQEVNERKAILEEAEKKALRAALIEERSRYCVFVTFLKPVVDEEVAMLSE-LSH--LQEVMVQLEKHTSDPYSLP 113 (189)
Q Consensus 37 ~l~~~lqdvs~rq~elee~e~~~lR~ALlEERrRfCflV~~~~pVv~~ei~~~~e-~~~--Lqe~l~~w~~~~~dP~kLP 113 (189)
.+..-|..+-++..+||+-.-+-+|+.|.. ||-.++..|+.++.-+.-+.. ++. -..-|..|.+.-+--...|
T Consensus 179 ~~~~~m~~~~~~~Q~lEe~Ri~~~k~~l~~----y~~~~~~~~~~~~~~~e~~~~~~~~id~~~Di~~fv~~~gtG~~~P 254 (261)
T cd07648 179 DFETKMTDSCKRFQEIEESHLRQMKEFLAS----YAEVLSENHSAVGQVHEEFKRQVDELTVDKLLRQFVESKGTGTEKP 254 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhccchHHHHHHHHHHHHHhCCHHHHHHHHHHcCCCCCCCC
Confidence 445556666666677777777777777764 777777777765544443333 222 2344566666666555555
Q ss_pred hH
Q psy10344 114 PA 115 (189)
Q Consensus 114 ~~ 115 (189)
+.
T Consensus 255 ~~ 256 (261)
T cd07648 255 EL 256 (261)
T ss_pred CC
Confidence 53
No 49
>PF14854 LURAP: Leucine rich adaptor protein
Probab=30.73 E-value=84 Score=25.35 Aligned_cols=41 Identities=29% Similarity=0.386 Sum_probs=17.7
Q ss_pred ccCCCCCCCCCCCCCCCCcccccc-cccCCCCCCCCCCCCCC
Q psy10344 130 WLLPSPTSSPGSLGSRKSSMCSIS-SINSSSSGSSKSHHSPS 170 (189)
Q Consensus 130 ~~~~~p~~s~~~~~srkss~cs~~-s~~~~~~~~~~~~~~~~ 170 (189)
|-.+--.+..+..+|.-+|.||+. +-..+.-||..+-+-|+
T Consensus 57 WlmEEr~~l~s~~SSlt~S~~SL~~s~~~s~rgs~~sl~d~~ 98 (121)
T PF14854_consen 57 WLMEERGALTSRCSSLTSSLYSLLESQDTSLRGSWNSLQDPN 98 (121)
T ss_pred HHHHHhhcccCCcccccccccccccCCCccccCchhccCCCC
Confidence 433333333333445556666643 22233345544444443
No 50
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=30.26 E-value=4.5e+02 Score=26.73 Aligned_cols=46 Identities=13% Similarity=0.233 Sum_probs=27.2
Q ss_pred HHHHHHhhhh-hhhhhhccCc-chHHHHHhhhchhHHHHHHHHHHHHh
Q psy10344 61 RAALIEERSR-YCVFVTFLKP-VVDEEVAMLSELSHLQEVMVQLEKHT 106 (189)
Q Consensus 61 R~ALlEERrR-fCflV~~~~p-Vv~~ei~~~~e~~~Lqe~l~~w~~~~ 106 (189)
|...|++|-. .=-.+..+.| ..+.|-.|..|+..++..|..++...
T Consensus 608 ~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si 655 (717)
T PF10168_consen 608 KQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQDLKASI 655 (717)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555533 2123345556 45668888888877777776655443
No 51
>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length. Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown.
Probab=29.52 E-value=3.9e+02 Score=23.48 Aligned_cols=49 Identities=12% Similarity=0.245 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCcchHHHHHhhhc-hhHHHHHHHHHHH
Q psy10344 45 VNERKAILEEAEKKALRAALIEERSRYCVFVTFLKPVVDEEVAMLSE-LSHLQEVMVQLEK 104 (189)
Q Consensus 45 vs~rq~elee~e~~~lR~ALlEERrRfCflV~~~~pVv~~ei~~~~e-~~~Lqe~l~~w~~ 104 (189)
...-...+++|+++.++.. +.-|.- ||-.|+.+|.. ++.|+...+.++.
T Consensus 162 ~~~Lee~i~~FEkqKl~Dl----K~i~sd-------Fv~iEM~fHaKALEv~T~a~q~i~~ 211 (219)
T PF06730_consen 162 TKQLEETIDNFEKQKLKDL----KKIFSD-------FVTIEMVFHAKALEVYTAAYQDIQN 211 (219)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3334455667888777753 333333 44559999988 6888887766654
No 52
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=29.46 E-value=2.1e+02 Score=24.40 Aligned_cols=11 Identities=27% Similarity=0.522 Sum_probs=7.1
Q ss_pred hHHHHHHHhhh
Q psy10344 18 DTLRLQKKVGR 28 (189)
Q Consensus 18 ~~~K~QKK~RR 28 (189)
+++|++.|+.|
T Consensus 154 e~eK~~~K~~k 164 (239)
T cd07647 154 EAEKLKKKAAQ 164 (239)
T ss_pred HHHHHHHHHHH
Confidence 56777777733
No 53
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=28.92 E-value=1.2e+02 Score=26.03 Aligned_cols=44 Identities=30% Similarity=0.348 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhhhhhhhhhhccCcchHHHHHhhhc-hhHHHHHHHHHH
Q psy10344 56 EKKALRAALIEERSRYCVFVTFLKPVVDEEVAMLSE-LSHLQEVMVQLE 103 (189)
Q Consensus 56 e~~~lR~ALlEERrRfCflV~~~~pVv~~ei~~~~e-~~~Lqe~l~~w~ 103 (189)
+.+.+.=+|-|||.||--|..- .|.++.-+.+ -.+|+.-|+.=+
T Consensus 106 e~Q~lql~L~eEr~Ry~rLQqs----sD~~lD~Lr~qq~~Lq~qL~~T~ 150 (179)
T PF13942_consen 106 EQQVLQLQLSEERARYQRLQQS----SDSELDALRQQQQRLQYQLDTTT 150 (179)
T ss_pred HhHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788999999999887654 5888888887 477776664433
No 54
>PF07373 CAMP_factor: CAMP factor (Cfa); InterPro: IPR010860 This family consists of several bacterial CAMP factor (Cfa) proteins, which seem to be specific to Streptococcus species. The CAMP reaction is a synergistic lysis of erythrocytes by the interaction of an extracellular protein (CAMP factor) produced by some streptococcal species with the Staphylococcus aureus sphingomyelinase C (beta-toxin) [].
Probab=28.69 E-value=1.4e+02 Score=26.41 Aligned_cols=67 Identities=24% Similarity=0.358 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCcchHHHHHhhhc-hhHHHHHHHHHHH---HhCCCCCC
Q psy10344 37 DLQKALQEVNERKAILEEAEKKALRAALIEERSRYCVFVTFLKPVVDEEVAMLSE-LSHLQEVMVQLEK---HTSDPYSL 112 (189)
Q Consensus 37 ~l~~~lqdvs~rq~elee~e~~~lR~ALlEERrRfCflV~~~~pVv~~ei~~~~e-~~~Lqe~l~~w~~---~~~dP~kL 112 (189)
+-.+.+++|+.+..+|.+. +..++... ...+|.-+-+ +..|.+.|+...+ ...|+..+
T Consensus 16 ~a~~~~~~vn~~i~~L~~~-q~~v~~~~-----------------~~~~I~~ll~ta~~l~~~l~~~~~G~~~~ydl~sI 77 (228)
T PF07373_consen 16 EAQQELQDVNARIAQLQSI-QKSVKGSD-----------------YEKEINKLLKTAFELKQSLEKIAEGGITIYDLDSI 77 (228)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHhcccch-----------------HHHHHHHHHHHHHHHHHHHHHHhcCCCcccchhhH
Confidence 3467899999999999988 55555444 2345555555 5677888877777 77899999
Q ss_pred chHHHHHHH
Q psy10344 113 PPASEQVMA 121 (189)
Q Consensus 113 P~~seqvI~ 121 (189)
|++++-++.
T Consensus 78 ~~Ri~Ll~~ 86 (228)
T PF07373_consen 78 PARIELLID 86 (228)
T ss_pred HHHHHHHHH
Confidence 999987654
No 55
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=28.53 E-value=1.9e+02 Score=28.94 Aligned_cols=61 Identities=20% Similarity=0.143 Sum_probs=44.0
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------hhhhhh-------hhccCcchHHHHHhhhc
Q psy10344 30 GVVGRNADLQKALQEVNERKAILEEAEKKALRAALIEER---------SRYCVF-------VTFLKPVVDEEVAMLSE 91 (189)
Q Consensus 30 g~g~~~~~l~~~lqdvs~rq~elee~e~~~lR~ALlEER---------rRfCfl-------V~~~~pVv~~ei~~~~e 91 (189)
.-+.....+...++++..++.+|++..+..-.+||-|+- =|.||| +|.+||+.+ +..|+.-
T Consensus 447 ~v~~~~~~~r~~a~~~Lq~e~elqeiv~lVG~eal~e~~~~il~va~~ire~fLqQnafd~vD~~~~~~k-q~~mm~~ 523 (588)
T COG1155 447 NVSPEWGALRDQAMEILQRESELQEIVQLVGYDALPEKEKSILDVARIIREDFLQQNAFDEIDAYCSLRK-QYLMLKA 523 (588)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHhhcccCcccccCCHHH-HHHHHHH
Confidence 344456677777788888999999988777666665443 378998 788999965 6666654
No 56
>KOG3850|consensus
Probab=28.52 E-value=2.1e+02 Score=27.57 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=19.0
Q ss_pred HHHHHHHhhhhhhhhhhccCcch
Q psy10344 60 LRAALIEERSRYCVFVTFLKPVV 82 (189)
Q Consensus 60 lR~ALlEERrRfCflV~~~~pVv 82 (189)
+-++|-|||=||--|-+.+.-.+
T Consensus 297 i~etLQEERyR~erLEEqLNdlt 319 (455)
T KOG3850|consen 297 IAETLQEERYRYERLEEQLNDLT 319 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHH
Confidence 34689999999999988877665
No 57
>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function. Members are predicted to be integral membrane proteins.; GO: 0016020 membrane
Probab=28.24 E-value=1.3e+02 Score=24.12 Aligned_cols=44 Identities=16% Similarity=0.268 Sum_probs=24.9
Q ss_pred HHHHhhhhhhHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHHHH
Q psy10344 9 RSELKKRSTDTLRLQKKVGRKGVVGRNADLQKALQEVNERKAIL 52 (189)
Q Consensus 9 r~ElKkk~~~~~K~QKK~RRKg~g~~~~~l~~~lqdvs~rq~el 52 (189)
..+.+++..++++..+++++.+.......+.+--+++...+.++
T Consensus 42 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~ 85 (168)
T PF01956_consen 42 MDKYQKRMKEFQKRYRELRKNGDFKKPKKLEKRQMELMEKQQEM 85 (168)
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHHHH
Confidence 45556666777777788866554333334444444455555554
No 58
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.01 E-value=2.3e+02 Score=25.60 Aligned_cols=64 Identities=17% Similarity=0.234 Sum_probs=28.5
Q ss_pred HHHHHHHHhhhhhhHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy10344 5 YKKARSELKKRSTDTLRLQKKVGRKGVVGRNADLQKALQEVNERKAILEEAEKKALRAALIEERSRYC 72 (189)
Q Consensus 5 ~Kr~r~ElKkk~~~~~K~QKK~RRKg~g~~~~~l~~~lqdvs~rq~elee~e~~~lR~ALlEERrRfC 72 (189)
-+..+.|+..-...++..++|. ..-+ +...+...-|..+...+.++++-|.+ |..++++|-|=-
T Consensus 47 ~~~~q~ei~~L~~qi~~~~~k~-~~~~-~~i~~~~~eik~l~~eI~~~~~~I~~--r~~~l~~raRAm 110 (265)
T COG3883 47 KKNIQNEIESLDNQIEEIQSKI-DELQ-KEIDQSKAEIKKLQKEIAELKENIVE--RQELLKKRARAM 110 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 3444445444444455555554 1111 11122223333333333333333332 677888888843
No 59
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=26.83 E-value=2.4e+02 Score=23.08 Aligned_cols=37 Identities=14% Similarity=0.284 Sum_probs=18.3
Q ss_pred HHHHhhhhh-----hhhhhccCcchHHHHHhhhchhHHHHHHHHHHHH
Q psy10344 63 ALIEERSRY-----CVFVTFLKPVVDEEVAMLSELSHLQEVMVQLEKH 105 (189)
Q Consensus 63 ALlEERrRf-----CflV~~~~pVv~~ei~~~~e~~~Lqe~l~~w~~~ 105 (189)
.+..|-.|| --|-..+..+++.+| .+=++.++.|...
T Consensus 192 ~~k~E~~rf~~~k~~d~k~~l~~~~~~~i------~~~~~~~~~We~~ 233 (236)
T PF09325_consen 192 NIKKELERFEKEKVKDFKSMLEEYAESQI------EYQKKMLEAWETF 233 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhH
Confidence 344444444 334444444444444 4445667777654
No 60
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=26.31 E-value=2.8e+02 Score=23.59 Aligned_cols=10 Identities=20% Similarity=0.189 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q psy10344 52 LEEAEKKALR 61 (189)
Q Consensus 52 lee~e~~~lR 61 (189)
+++.-...|.
T Consensus 190 ~~~~~~~~~~ 199 (239)
T cd07647 190 WESEHATACQ 199 (239)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 61
>KOG4796|consensus
Probab=25.74 E-value=3.9e+02 Score=26.90 Aligned_cols=79 Identities=15% Similarity=0.309 Sum_probs=40.6
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHhh-hcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCcch
Q psy10344 4 KYKKARSELKKRSTDTLRLQKKVG-RKGVVGRNADLQKALQEVNERKAILEEAEKKALRAALIEERSRYCVFVTFLKPVV 82 (189)
Q Consensus 4 e~Kr~r~ElKkk~~~~~K~QKK~R-RKg~g~~~~~l~~~lqdvs~rq~elee~e~~~lR~ALlEERrRfCflV~~~~pVv 82 (189)
||....+++-.....+..|.-+++ |-.+|. +.+++.-..| +.|++.|+ .---..|||.||
T Consensus 516 EYreLharve~vs~rF~~Lea~L~srls~gS--~ey~~i~~qI---~qEYeki~---~dp~y~eeK~Rc----------- 576 (604)
T KOG4796|consen 516 EYRELHARVETVSRRFRQLEAQLKSRLSPGS--PEYKQIEKQI---LQEYEKIR---KDPNYMEEKQRC----------- 576 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCC--CcHHHHHHHH---HHHHHHhh---cCccHHHHHHHH-----------
Confidence 444555555555555555655553 333332 2333333333 23333333 223345666665
Q ss_pred HHHHHhhhc-hhHHHHHHHHHHHH
Q psy10344 83 DEEVAMLSE-LSHLQEVMVQLEKH 105 (189)
Q Consensus 83 ~~ei~~~~e-~~~Lqe~l~~w~~~ 105 (189)
+|||. +.||...|-.|.+.
T Consensus 577 ----eYLhsKLaHIK~lI~efDk~ 596 (604)
T KOG4796|consen 577 ----EYLHSKLAHIKTLIGEFDKQ 596 (604)
T ss_pred ----HHHHHHHHHHHHHHHHHHHh
Confidence 44554 67888888887664
No 62
>PF07957 DUF3294: Protein of unknown function (DUF3294); InterPro: IPR012917 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This is a family of mitochondrial ribosomal proteins, which appears to be fungal specific [].
Probab=25.59 E-value=2.1e+02 Score=25.16 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10344 39 QKALQEVNERKAILEEAEKKALRAA 63 (189)
Q Consensus 39 ~~~lqdvs~rq~elee~e~~~lR~A 63 (189)
...+|.|..-|.+|+..+.++.|++
T Consensus 73 eDLVQLV~ELQgQLd~lEeRsiRR~ 97 (216)
T PF07957_consen 73 EDLVQLVGELQGQLDNLEERSIRRT 97 (216)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999964
No 63
>PF03792 PBC: PBC domain; InterPro: IPR005542 Pbx proteins are members of the TALE (three-amino-acid loop extension) family of atypical homeodomain proteins, whose members are characterised by a three-residue insertion in the first helix of the homeodomain involved in their interaction with Hox proteins. Examination of Pbx1 has shown that, in addition to the homeodomain, a short 16-residue C-terminal tail is essential for maximal cooperative interactions with Hox partners as well as for maximal monomeric binding of Pbx1 to DNA. The PBX domain is a bipartite acidic domain [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=25.42 E-value=4.5e+02 Score=22.77 Aligned_cols=36 Identities=14% Similarity=0.282 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy10344 37 DLQKALQEVNERKAILEEAEKKALRAALIEERSRYC 72 (189)
Q Consensus 37 ~l~~~lqdvs~rq~elee~e~~~lR~ALlEERrRfC 72 (189)
.....+..|..|..-++.-.++.-.+|++-=|+||+
T Consensus 155 eiE~m~~~i~~Kf~~iq~qLKQstCEaVm~LRsRfl 190 (191)
T PF03792_consen 155 EIERMVNIIHRKFSKIQMQLKQSTCEAVMILRSRFL 190 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346788899999999999999999999999999996
No 64
>PF07303 Occludin_ELL: Occludin homology domain; InterPro: IPR010844 This represents a conserved region approximately 100 residues long within eukaryotic occludin proteins and the RNA polymerase II elongation factor ELL. Occludin is an integral membrane protein that localises to tight junctions [], while ELL is an elongation factor that can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by polymerase at multiple sites along the DNA []. This shared domain is thought to mediate protein interactions [].; PDB: 1WPA_A 3G7C_A 1XAW_A.
Probab=25.11 E-value=3.1e+02 Score=20.87 Aligned_cols=67 Identities=12% Similarity=0.118 Sum_probs=34.5
Q ss_pred hHHHHHHHHHhhhhhhHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhc
Q psy10344 3 KKYKKARSELKKRSTDTLRLQKKVGRKGVVGRNADLQKALQEVNERKAILEEAEKKALRAALIEERSRYCVFVTF 77 (189)
Q Consensus 3 ke~Kr~r~ElKkk~~~~~K~QKK~RRKg~g~~~~~l~~~lqdvs~rq~elee~e~~~lR~ALlEERrRfCflV~~ 77 (189)
.|||...+++-.-......|...+.+-..| ......+. .|-..+..+. .--..-.|+|.||.+|-++
T Consensus 22 ~EYk~L~~~v~~v~~~f~~L~~~l~~l~~~--s~ey~~i~-~I~~eY~k~K-----k~~p~y~~~K~Rc~yL~~K 88 (101)
T PF07303_consen 22 DEYKELHAEVDAVSRRFQELDSELKRLPPG--SQEYKRIA-QILQEYNKKK-----KRDPNYQEKKKRCEYLHNK 88 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-TT--SHHHHHHH----HHHHHHH-----HTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--CcHHHHHH-HHHHHHHHHH-----hcCccHHHHHHHHHHHHHH
Confidence 367777777776666677777666222222 23333333 3322222221 1224567888887776555
No 65
>COG1422 Predicted membrane protein [Function unknown]
Probab=24.89 E-value=99 Score=26.90 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=15.2
Q ss_pred ChhHHHHHHHHHhhhhhh--HHHHH
Q psy10344 1 MLKKYKKARSELKKRSTD--TLRLQ 23 (189)
Q Consensus 1 ~ake~Kr~r~ElKkk~~~--~~K~Q 23 (189)
|+|||+++..|.+++.++ ++|+|
T Consensus 80 ~m~efq~e~~eA~~~~d~~~lkkLq 104 (201)
T COG1422 80 MMKEFQKEFREAQESGDMKKLKKLQ 104 (201)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 467777777777776554 55555
No 66
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=24.65 E-value=3e+02 Score=23.79 Aligned_cols=29 Identities=10% Similarity=-0.154 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhc
Q psy10344 49 KAILEEAEKKALRAALIEERSRYCVFVTF 77 (189)
Q Consensus 49 q~elee~e~~~lR~ALlEERrRfCflV~~ 77 (189)
..++++--...+...=--|+.|.+||-+.
T Consensus 181 r~~we~~m~~~~~~~Q~~Ee~Rl~~lk~~ 209 (233)
T cd07649 181 QSKWFEEMVTTSLELERLEVERIEMIRQH 209 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443
No 67
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=24.16 E-value=1.6e+02 Score=25.55 Aligned_cols=61 Identities=11% Similarity=0.048 Sum_probs=37.5
Q ss_pred hHHHHHHHhhhcCCCC---CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccC
Q psy10344 18 DTLRLQKKVGRKGVVG---RNADLQKALQEVNERKAILEEAEKKALRAALIEERSRYCVFVTFLK 79 (189)
Q Consensus 18 ~~~K~QKK~RRKg~g~---~~~~l~~~lqdvs~rq~elee~e~~~lR~ALlEERrRfCflV~~~~ 79 (189)
+++|++.|+ .|.+.. ....+..++..++.=...+++--...|-..---|.-|..||-+.+-
T Consensus 155 e~~K~~~Kl-~K~~~~~~k~~~~Y~~~v~~l~~~~~~w~~~~~~~c~~fq~lEeeRi~f~k~~lw 218 (240)
T cd07672 155 QQEKLFAKL-AQSKQNAEDADRLYMQNISVLDKIREDWQKEHVKACEFFEKQECERINFFRNAVW 218 (240)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666 333321 1223455677776667777777777888776667777777665533
No 68
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=23.87 E-value=4.7e+02 Score=22.49 Aligned_cols=58 Identities=17% Similarity=0.161 Sum_probs=27.5
Q ss_pred HHHHHHHhhhhhhHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10344 6 KKARSELKKRSTDTLRLQKKVGRKGVVGRNADLQKALQEVNERKAILEEAEKKALRAA 63 (189)
Q Consensus 6 Kr~r~ElKkk~~~~~K~QKK~RRKg~g~~~~~l~~~lqdvs~rq~elee~e~~~lR~A 63 (189)
+-+..|+..=-..+.++|++..++...+.+..+...--++++...+-+.-+..-+-++
T Consensus 108 ~s~~~ei~~L~~kI~~L~~~in~~~k~~~n~~i~slk~EL~d~iKe~e~~emeLyyec 165 (181)
T PF04645_consen 108 KSIKKEIEILRLKISSLQKEINKNKKKDLNEEIESLKSELNDLIKEREIREMELYYEC 165 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444443344677777775555543333333333344444444444444434333
No 69
>PF00429 TLV_coat: ENV polyprotein (coat polyprotein); InterPro: IPR018154 Enveloped viruses such as Human immunodeficiency virus 1, influenza virus, and Ebola virus sp. express a surface glycoprotein that mediates both cell attachment and fusion of viral and cellular membranes. The ENV polyprotein (coat polyprotein) usually contains two coat proteins which differ depending on the source. The structure of a number of the ENV polyprotein domains have been determined: The crystal structure of an extraviral segment of the Moloney murine leukemia virus (MoMuLV) transmembrane (TM) subunit has been determined to 1.7-A resolution. This segment contains a trimeric coiled coil, with a hydrophobic cluster at its base and a strand that packs in an antiparallel orientation against the coiled coil. This structure serves as a model for a wide range of viral fusion proteins; key residues in this structure are conserved among C- and D-type retroviruses and the filovirus ebola []. An essential step in retrovirus infection is the binding of the virus to its receptor on a target cell. The structure of the receptor-binding domain of the envelope glycoprotein from Friend murine leukemia virus (F-MuLV) has been determined determined to 2.0-A resolution. The core of the domain is an antiparallel beta sandwich, with two interstrand loops forming a helical subdomain atop the sandwich. The residues in the helical region, but not in the beta sandwich, are highly variable among mammalian C-type retroviruses with distinct tropisms, indicating that the helical subdomain determines the receptor specificity of the virus []. ; PDB: 1LCS_B 1MOF_A 1XNL_A 2XZ3_A 1AOL_A 1Y4M_C.
Probab=23.66 E-value=2.6e+02 Score=27.49 Aligned_cols=31 Identities=32% Similarity=0.547 Sum_probs=7.8
Q ss_pred HHHHHHHHHHhhhhhhhhhhccCcchHHHHHhhhc
Q psy10344 57 KKALRAALIEERSRYCVFVTFLKPVVDEEVAMLSE 91 (189)
Q Consensus 57 ~~~lR~ALlEERrRfCflV~~~~pVv~~ei~~~~e 91 (189)
+-|+-.+|=|| =||++| +..+++..|.-+.|
T Consensus 472 ~Gg~C~~l~~~---CC~y~~-~s~~v~~~i~~l~e 502 (561)
T PF00429_consen 472 QGGLCAALKEE---CCFYIN-HSGIVRDSIKKLRE 502 (561)
T ss_dssp GTSHHHHHTS-----------------HHHHHHTT
T ss_pred cCCchhhhCCc---eEEEEC-CccchhHHHHHHHH
Confidence 33444444433 455554 23343444444444
No 70
>cd07679 F-BAR_PACSIN2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 2 (PACSIN2). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 2 or Syndapin II is expressed ubiquitously and is involved in the regulation of tubulin polymerization. It associates with Golgi membranes and forms a complex with dynamin II which is crucial in promoting vesicle formation from the trans-Golgi network. PACSIN 2 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave su
Probab=23.26 E-value=5.5e+02 Score=23.03 Aligned_cols=63 Identities=22% Similarity=0.248 Sum_probs=45.1
Q ss_pred hHHHHHHHhhhcCCCC---CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCcc
Q psy10344 18 DTLRLQKKVGRKGVVG---RNADLQKALQEVNERKAILEEAEKKALRAALIEERSRYCVFVTFLKPV 81 (189)
Q Consensus 18 ~~~K~QKK~RRKg~g~---~~~~l~~~lqdvs~rq~elee~e~~~lR~ALlEERrRfCflV~~~~pV 81 (189)
.+.|+|-|+ .|.+.. ....+.+.|++|+.=...+++--...|-..=-.|+.|.+||-+.+-.+
T Consensus 169 q~~K~~~k~-~k~~~~~~k~~~~Y~~~l~~L~~~~~~y~e~m~~~fe~~Q~~E~eRi~F~K~~l~~~ 234 (258)
T cd07679 169 QLKKLQDKV-EKCKQDVLKTKEKYEKSLKELDQTTPQYMENMEQVFEQCQQFEEKRLRFFREVLLEV 234 (258)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666555 333321 122446788888888888888888899988899999999998875444
No 71
>KOG3091|consensus
Probab=22.55 E-value=7.6e+02 Score=24.45 Aligned_cols=85 Identities=14% Similarity=0.166 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCcchH-HHHHhhhc------hhHHHHHHHHHHHHhCCCCCC
Q psy10344 40 KALQEVNERKAILEEAEKKALRAALIEERSRYCVFVTFLKPVVD-EEVAMLSE------LSHLQEVMVQLEKHTSDPYSL 112 (189)
Q Consensus 40 ~~lqdvs~rq~elee~e~~~lR~ALlEERrRfCflV~~~~pVv~-~ei~~~~e------~~~Lqe~l~~w~~~~~dP~kL 112 (189)
-.|..|.++..+|+.-.++++-. +.|-|+|.-.|-.+.--|+- .||--... =+.|..+|+.+....++|++|
T Consensus 355 ~ri~~i~e~v~eLqk~~ad~~~K-I~~~k~r~~~Ls~RiLRv~ikqeilr~~G~~L~~~EE~Lr~Kldtll~~ln~Pnq~ 433 (508)
T KOG3091|consen 355 IRINAIGERVTELQKHHADAVAK-IEEAKNRHVELSHRILRVMIKQEILRKRGYALTPDEEELRAKLDTLLAQLNAPNQL 433 (508)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccHHHHHHHHHHHHHHhcChHHH
Confidence 35666777777777555555432 45566676666666444432 22211111 268999999999999999999
Q ss_pred chHHHHHHHHhcC
Q psy10344 113 PPASEQVMADMKG 125 (189)
Q Consensus 113 P~~seqvI~dlk~ 125 (189)
=-++-.+.+.++-
T Consensus 434 k~Rl~~L~e~~r~ 446 (508)
T KOG3091|consen 434 KARLDELYEILRM 446 (508)
T ss_pred HHHHHHHHHHHHh
Confidence 9999888888764
No 72
>cd07353 harmonin_N N-terminal protein-binding module of harmonin. Harmonin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein, which organizes the Usher protein network of the inner ear and the retina. Harmonin contains a single copy of this domain, which is found at the N-terminus of all three harmonin isoform classes (a, b and c), and which preceeds the first PDZ protein-binding domain, PDZ1. This harmonin_N domain binds specifically to a short internal peptide fragment of the cadherin 23 cytoplasmic domain; cadherin 23 is a component of the Usher protein network.
Probab=21.87 E-value=92 Score=23.22 Aligned_cols=29 Identities=21% Similarity=0.311 Sum_probs=25.8
Q ss_pred HHHhhhchhHHHHHHHHHHHHhCCCCCCc
Q psy10344 85 EVAMLSELSHLQEVMVQLEKHTSDPYSLP 113 (189)
Q Consensus 85 ei~~~~e~~~Lqe~l~~w~~~~~dP~kLP 113 (189)
-+.|+|+--.|.+.+-++....++|+.+|
T Consensus 28 ~Lr~YHqSm~lp~li~Dlk~VIN~P~R~p 56 (79)
T cd07353 28 VLRMYHQSMNLPVLVGDLKLVINEPSRLP 56 (79)
T ss_pred HHHHHHhccCHHHHHHHHHHHhCCccccc
Confidence 35688888889999999999999999999
No 73
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=21.73 E-value=1.5e+02 Score=25.50 Aligned_cols=40 Identities=18% Similarity=0.047 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcc
Q psy10344 39 QKALQEVNERKAILEEAEKKALRAALIEERSRYCVFVTFL 78 (189)
Q Consensus 39 ~~~lqdvs~rq~elee~e~~~lR~ALlEERrRfCflV~~~ 78 (189)
..+++++..-..++++.-.++|...=.-|.-|.+||-+.+
T Consensus 195 ~~~~~~l~~~~~~~~~~~~~~~~~~Q~~E~~rl~~~k~~l 234 (239)
T cd07658 195 YTCCVRLERLRLEWESALRKGLNQYESLEEERLQHLKHSL 234 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666777778888888888788888888887654
No 74
>PF04644 Motilin_ghrelin: Motilin/ghrelin; InterPro: IPR006738 Motilin is a gastrointestinal regulatory polypeptide produced by motilin cells in the duodenal epithelium. It is released into the general circulation at about 100-min intervals during the inter-digestive state and is the most important factor in controlling the inter-digestive migrating contractions. Motilin also stimulates endogenous release of the endocrine pancreas []. This domain is also found in ghrelin, a growth hormone secretagogue synthesised by endocrine cells in the stomach. Ghrelin stimulates growth hormone secretagogue receptors in the pituitary. These receptors are distinct from the growth hormone-releasing hormone receptors, and thus provide a means of controlling pituitary growth hormone release by the gastrointestinal system [].; GO: 0005179 hormone activity, 0005576 extracellular region; PDB: 1LBJ_A.
Probab=21.63 E-value=48 Score=20.38 Aligned_cols=17 Identities=29% Similarity=0.390 Sum_probs=10.9
Q ss_pred hhHHHHHHHhhhcCCCC
Q psy10344 17 TDTLRLQKKVGRKGVVG 33 (189)
Q Consensus 17 ~~~~K~QKK~RRKg~g~ 33 (189)
.++.|+|.|.|+||+..
T Consensus 7 ~e~qr~QekE~nk~~kK 23 (28)
T PF04644_consen 7 SEHQRMQEKERNKGQKK 23 (28)
T ss_dssp HHHHHHHHHHHHHH---
T ss_pred hHHHHHHHHHhccCccc
Confidence 45678888888888754
No 75
>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase 2 (GRAF2), also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA which regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle and also interacts with PKNbeta, which is a target of Rho. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of the related prote
Probab=21.30 E-value=5.4e+02 Score=22.25 Aligned_cols=60 Identities=13% Similarity=0.159 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhhhccCcchHHHHHhhhch-hHHHH
Q psy10344 37 DLQKALQEVNERKAILEEAEKK-ALRAALIEERSRYCVFVTFLKPVVDEEVAMLSEL-SHLQE 97 (189)
Q Consensus 37 ~l~~~lqdvs~rq~elee~e~~-~lR~ALlEERrRfCflV~~~~pVv~~ei~~~~e~-~~Lqe 97 (189)
.+.++-++|..-.......-=+ -+.=-.|++|+||.|+-.. ..++...+++|+.. +++++
T Consensus 141 e~~EA~~~l~~~r~~F~~~sLdYv~qin~lQ~rKKfe~le~l-l~~m~a~~tffhqG~el~~d 202 (207)
T cd07635 141 QLQEADVQVEQNRQHFYELSLEYVCKLQEIQERKKFECVEPM-LSFFQGVFTFYHQGYELAKD 202 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHh
Confidence 5555555554433332222111 2234468999999987665 45667888888764 55543
No 76
>PLN03069 magnesiumprotoporphyrin-IX chelatase subunit H; Provisional
Probab=21.14 E-value=67 Score=34.53 Aligned_cols=53 Identities=19% Similarity=0.352 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhhhhhhhhhhccCcchHHHHHhhhchhHHHHHHHHHHHHhCCCC
Q psy10344 56 EKKALRAALIEERSRYCVFVTFLKPVVDEEVAMLSELSHLQEVMVQLEKHTSDPY 110 (189)
Q Consensus 56 e~~~lR~ALlEERrRfCflV~~~~pVv~~ei~~~~e~~~Lqe~l~~w~~~~~dP~ 110 (189)
+.+..=|+.+--||=|+.+||.+-|.+. ...+++++..|.+.|+.|.+.- ||.
T Consensus 646 ~vnNPgEg~~AKRR~~AviIsHLtPP~~-~AgLY~~L~~L~~li~eY~~~~-~~~ 698 (1220)
T PLN03069 646 AANNPSEATIAKRRSYANTISYLTPPAE-NAGLYKGLKQLSELISSYQSLK-DSG 698 (1220)
T ss_pred eCCCcchHHHHHhcccceeeecCCCCcc-cccccHHHHHHHHHHHHHHhcc-Ccc
Confidence 3444557888899999999999999986 7888999999999999999764 443
No 77
>PF08361 TetR_C_2: MAATS-type transcriptional repressor, C-terminal region; InterPro: IPR013572 This entry is named after the various transcriptional regulatory proteins that it contains, including MtrR (Q6RV06 from SWISSPROT), AcrR (P34000 from SWISSPROT), ArpR (Q9KJC4 from SWISSPROT), TtgR (Q9AIU0 from SWISSPROT) and SmeT (Q8KLP4 from SWISSPROT). These are members of the TetR (tetracycline resistance) family of transcriptional repressors, that are involved in the control of expression of multidrug resistance proteins [, , ]. ; GO: 0003677 DNA binding; PDB: 3BCG_B 2QOP_A 2UXP_B 2XDN_C 2UXH_A 2UXI_B 2UXO_A 2UXU_B 2WUI_A 2W53_A ....
Probab=20.79 E-value=1.9e+02 Score=21.82 Aligned_cols=61 Identities=28% Similarity=0.428 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh--------hhhhhccCcchHHHHHhhhc-hhHHHHHHHHHHHHhCCCCCCch
Q psy10344 50 AILEEAEKKALRAALIEERSRY--------CVFVTFLKPVVDEEVAMLSE-LSHLQEVMVQLEKHTSDPYSLPP 114 (189)
Q Consensus 50 ~elee~e~~~lR~ALlEERrRf--------CflV~~~~pVv~~ei~~~~e-~~~Lqe~l~~w~~~~~dP~kLP~ 114 (189)
..|.++.-..++.+.-.||.|= |-||+-..|+.+.+..+..+ ...|...+ ..+.+-.+||+
T Consensus 4 ~~Lr~~~~~~l~~l~~d~~~Rrv~~I~~~kcE~~~e~~~~~~r~~~~~~~~~~~i~~~l----~~A~~~g~L~~ 73 (121)
T PF08361_consen 4 ERLREALIEALRRLAEDERQRRVFEILFHKCEYVEEMAPVRERRREAQREALARIERLL----RRAQARGQLPA 73 (121)
T ss_dssp HHHHHHHHHHHHHHHHSHHHHHHHHHHHHS--SSTTTHHHHHHHHHHHHHHHHHHHHHH----HHHHHTTSS-T
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcccCCcccHHHHHHHHHHHHHHHHHHHHH----HHHHHcCCCCC
Confidence 4567777777777777777663 66666666776666666655 35666666 34444444444
No 78
>PF08439 Peptidase_M3_N: Oligopeptidase F; InterPro: IPR013647 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found towards the N terminus of metallopeptidases belonging to MEROPS peptidase subfamily M3B (oligopeptidase F, clan MA). An example protein is Lactococcus lactisPepF []. The function of this N-terminal domain is unknown.; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding; PDB: 2QR4_B 3CE2_A.
Probab=20.57 E-value=19 Score=24.78 Aligned_cols=18 Identities=17% Similarity=0.314 Sum_probs=12.9
Q ss_pred CCCCCCchHHHHHHHHhc
Q psy10344 107 SDPYSLPPASEQVMADMK 124 (189)
Q Consensus 107 ~dP~kLP~~seqvI~dlk 124 (189)
.-||+|+++.|.+|..+.
T Consensus 33 ~k~H~Ls~~~E~lLa~~~ 50 (70)
T PF08439_consen 33 YKKHTLSEEEEKLLAKLS 50 (70)
T ss_dssp GGGG---HHHHHHHHHCC
T ss_pred hCCcCCCHHHHHHHHHhh
Confidence 468999999999999983
No 79
>PLN00180 NDF6 (NDH-dependent flow 6); Provisional
Probab=20.35 E-value=1e+02 Score=26.24 Aligned_cols=22 Identities=45% Similarity=0.549 Sum_probs=15.1
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHh
Q psy10344 46 NERKAILEE-AEKKALRAALIEE 67 (189)
Q Consensus 46 s~rq~elee-~e~~~lR~ALlEE 67 (189)
-+||.+||+ ..++-+|+.||||
T Consensus 141 Yd~QEd~E~sAReeL~REELiEE 163 (180)
T PLN00180 141 YERQEDIEESARAELWREELIEE 163 (180)
T ss_pred eehHHHHHHHHHHHHHHHHHHHH
Confidence 356777765 4455678888887
No 80
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=20.28 E-value=3.6e+02 Score=25.62 Aligned_cols=24 Identities=33% Similarity=0.350 Sum_probs=18.5
Q ss_pred HHHHHHHHHhhhhhhhhhhccCcc
Q psy10344 58 KALRAALIEERSRYCVFVTFLKPV 81 (189)
Q Consensus 58 ~~lR~ALlEERrRfCflV~~~~pV 81 (189)
.-+.++|-|||-||=-|-+.+.-.
T Consensus 247 ~~~~~~LqEEr~R~erLEeqlNd~ 270 (395)
T PF10267_consen 247 QFILEALQEERYRYERLEEQLNDL 270 (395)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHH
Confidence 456789999999998888874444
No 81
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=20.07 E-value=2e+02 Score=21.26 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=16.5
Q ss_pred HHHhhhc-hhHHHHHHHHHHHHhC
Q psy10344 85 EVAMLSE-LSHLQEVMVQLEKHTS 107 (189)
Q Consensus 85 ei~~~~e-~~~Lqe~l~~w~~~~~ 107 (189)
||+++.. |.+|...|.++.....
T Consensus 62 EIA~lE~eV~~LE~~v~~L~~~l~ 85 (88)
T PF14389_consen 62 EIALLEAEVAKLEQKVLSLYRQLF 85 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777764 7888888877765543
Done!