Query psy10344
Match_columns 189
No_of_seqs 89 out of 113
Neff 4.4
Searched_HMMs 13730
Date Fri Aug 16 15:34:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10344.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/10344hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1y2oa1 a.238.1.3 (A:1-248) BA 99.9 6E-22 4.4E-26 162.7 14.6 122 2-123 124-247 (248)
2 d2elba1 a.238.1.1 (A:6-273) DC 93.8 0.097 7.1E-06 40.9 7.7 75 63-138 181-264 (268)
3 d1urua_ a.238.1.1 (A:) Amphiph 81.7 3.4 0.00025 29.8 8.2 39 67-105 172-211 (217)
4 d2d4ca1 a.238.1.1 (A:11-247) E 75.2 11 0.00079 27.5 9.4 31 74-104 205-236 (237)
5 d1y2oa1 a.238.1.3 (A:1-248) BA 62.9 17 0.0013 27.2 8.3 34 5-38 120-156 (248)
6 d1i4da_ a.238.1.2 (A:) Arfapti 60.5 15 0.0011 25.8 7.1 55 38-92 140-194 (200)
7 d1st6a4 a.24.9.1 (A:372-488) V 42.3 44 0.0032 23.7 7.1 52 9-61 57-111 (117)
8 d2efla1 a.238.1.4 (A:1-288) Fo 42.0 57 0.0042 23.6 11.4 56 65-124 218-273 (288)
9 d1st6a5 a.24.9.1 (A:489-646) V 33.1 85 0.0062 23.0 8.6 53 8-61 49-104 (158)
10 d1st6a3 a.24.9.1 (A:253-371) V 32.9 68 0.005 22.6 6.8 51 8-59 65-118 (119)
11 d2hzaa1 a.43.1.3 (A:1-48) Nick 22.9 26 0.0019 21.2 2.4 16 54-69 30-45 (48)
12 d2bj7a1 a.43.1.3 (A:1-50) Nick 20.5 28 0.002 21.3 2.2 16 53-68 31-46 (50)
No 1
>d1y2oa1 a.238.1.3 (A:1-248) BAP2/IRSp53 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.87 E-value=6e-22 Score=162.69 Aligned_cols=122 Identities=20% Similarity=0.281 Sum_probs=105.5
Q ss_pred hhHHHHHHHHHhhhhhhHHHHHHHhhhcCCCCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCc
Q psy10344 2 LKKYKKARSELKKRSTDTLRLQKKVGRKGVVGRN-ADLQKALQEVNERKAILEEAEKKALRAALIEERSRYCVFVTFLKP 80 (189)
Q Consensus 2 ake~Kr~r~ElKkk~~~~~K~QKK~RRKg~g~~~-~~l~~~lqdvs~rq~elee~e~~~lR~ALlEERrRfCflV~~~~p 80 (189)
.|++|++..++++...++.|++||.+++...... .....+.++++.++.+++++...+++.+++|||+||||||+.+|+
T Consensus 124 ~k~~k~~~~~l~K~~~~~~k~~kk~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~~eerkr~~~lv~~l~~ 203 (248)
T d1y2oa1 124 QTEQRSKGDALDKCQAELKKLRKKSQGSKNPQKYSDKELQYIDAISNKQGELENYVSDGYKTALTEERRRFCFLVEKQCA 203 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777777788888777444433222 233678899999999999999999999999999999999999999
Q ss_pred chHHHHHhhhch-hHHHHHHHHHHHHhCCCCCCchHHHHHHHHh
Q psy10344 81 VVDEEVAMLSEL-SHLQEVMVQLEKHTSDPYSLPPASEQVMADM 123 (189)
Q Consensus 81 Vv~~ei~~~~e~-~~Lqe~l~~w~~~~~dP~kLP~~seqvI~dl 123 (189)
|++.+++||++. +.|++.+|.|+++|.||++||+.+++||.+|
T Consensus 204 ~~~a~~~~~~q~~~~l~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 247 (248)
T d1y2oa1 204 VAKNSAAYHSKGKELLAQKLPLWQQACADPSKIPERAVQLMQQV 247 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHhCCHHHHHHHHhh
Confidence 999999999996 7899999999999999999999999999997
No 2
>d2elba1 a.238.1.1 (A:6-273) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=93.77 E-value=0.097 Score=40.95 Aligned_cols=75 Identities=9% Similarity=0.200 Sum_probs=47.8
Q ss_pred HHHHhhhhhhhhhhccCcchHHHHHhhhch-hHH----H----HHHHHHHHHhCCCCCCchHHHHHHHHhcCCCCcccCC
Q psy10344 63 ALIEERSRYCVFVTFLKPVVDEEVAMLSEL-SHL----Q----EVMVQLEKHTSDPYSLPPASEQVMADMKGSDTTWLLP 133 (189)
Q Consensus 63 ALlEERrRfCflV~~~~pVv~~ei~~~~e~-~~L----q----e~l~~w~~~~~dP~kLP~~seqvI~dlk~s~~~~~~~ 133 (189)
..+++|++|.++ +.++.++..++.+|+.. +.| . +.-..+++....-+..-...++.+.++......+-.+
T Consensus 181 ~~l~~~k~~~~l-~~l~~~~~a~~~ff~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P 259 (268)
T d2elba1 181 NTLQYKKKIALL-EPLLGYMQAQISFFKMGSENLNEQLEEFLANIGTSVQNVRREMDSDIETMQQTIEDLEVASDPLYVP 259 (268)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSSS
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccCCC
Confidence 367889999885 46688888888888762 222 2 2223344554445556677888899998766655334
Q ss_pred CCCCC
Q psy10344 134 SPTSS 138 (189)
Q Consensus 134 ~p~~s 138 (189)
+|++.
T Consensus 260 ~~~p~ 264 (268)
T d2elba1 260 DPDPT 264 (268)
T ss_dssp SCCTT
T ss_pred CCCCC
Confidence 44433
No 3
>d1urua_ a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=81.73 E-value=3.4 Score=29.81 Aligned_cols=39 Identities=23% Similarity=0.210 Sum_probs=27.4
Q ss_pred hhhhhhhhhhccCcchHHHHHhhhch-hHHHHHHHHHHHH
Q psy10344 67 ERSRYCVFVTFLKPVVDEEVAMLSEL-SHLQEVMVQLEKH 105 (189)
Q Consensus 67 ERrRfCflV~~~~pVv~~ei~~~~e~-~~Lqe~l~~w~~~ 105 (189)
+..|.-+|+..+..++..++.+++.+ ..+.+..+.+..+
T Consensus 172 ~~~~~~~~~~~l~~~~~~q~~~~~~~~~~~~~l~~~~~~l 211 (217)
T d1urua_ 172 YDSRILFLVTNLQTLFATEQVFHNETAKIYSELEAIVDKL 211 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555688888888999999999884 5555555555444
No 4
>d2d4ca1 a.238.1.1 (A:11-247) Endophilin-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=75.16 E-value=11 Score=27.46 Aligned_cols=31 Identities=29% Similarity=0.411 Sum_probs=26.1
Q ss_pred hhhccCcchHHHHHhhhc-hhHHHHHHHHHHH
Q psy10344 74 FVTFLKPVVDEEVAMLSE-LSHLQEVMVQLEK 104 (189)
Q Consensus 74 lV~~~~pVv~~ei~~~~e-~~~Lqe~l~~w~~ 104 (189)
|++.+..+++.++.+|.. ...|++..+.+.+
T Consensus 205 ~~~~l~~~~~aq~~y~~~~~~~l~~l~~~l~~ 236 (237)
T d2d4ca1 205 QVSQLSALVQAQLEYHKQAVQILQQVTVRLEE 236 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 357788999999999998 4889999888865
No 5
>d1y2oa1 a.238.1.3 (A:1-248) BAP2/IRSp53 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=62.87 E-value=17 Score=27.17 Aligned_cols=34 Identities=24% Similarity=0.277 Sum_probs=23.3
Q ss_pred HHHHHHHHhhhhhhHHHHH---HHhhhcCCCCCchHH
Q psy10344 5 YKKARSELKKRSTDTLRLQ---KKVGRKGVVGRNADL 38 (189)
Q Consensus 5 ~Kr~r~ElKkk~~~~~K~Q---KK~RRKg~g~~~~~l 38 (189)
-|++..+.++...++.|.+ +|++||+.++.....
T Consensus 120 kK~~~k~~k~~~~~l~K~~~~~~k~~kk~~~~~~~~~ 156 (248)
T d1y2oa1 120 LKKYQTEQRSKGDALDKCQAELKKLRKKSQGSKNPQK 156 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchH
Confidence 3667777777777888888 667666666555444
No 6
>d1i4da_ a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Human (Homo sapiens) [TaxId: 9606]}
Probab=60.53 E-value=15 Score=25.76 Aligned_cols=55 Identities=13% Similarity=0.036 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCcchHHHHHhhhch
Q psy10344 38 LQKALQEVNERKAILEEAEKKALRAALIEERSRYCVFVTFLKPVVDEEVAMLSEL 92 (189)
Q Consensus 38 l~~~lqdvs~rq~elee~e~~~lR~ALlEERrRfCflV~~~~pVv~~ei~~~~e~ 92 (189)
+..+-+++..-...++....+-+.+.-.=+..|.=.|+..+..++...+.+|...
T Consensus 140 l~~ae~~~~~a~~~fe~~~~~~~~~l~~l~~~r~~~~~~~l~~~~~~~~~f~~~~ 194 (200)
T d1i4da_ 140 LESAQATFQAHRDKYEKLRGDVAIKLKFLEENKIKVMHKQLLLFHNAVSAYFAGN 194 (200)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555566666665555555544445555667778888888888888763
No 7
>d1st6a4 a.24.9.1 (A:372-488) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=42.30 E-value=44 Score=23.67 Aligned_cols=52 Identities=13% Similarity=0.233 Sum_probs=39.8
Q ss_pred HHHHhhhhhhHHHHHHH---hhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10344 9 RSELKKRSTDTLRLQKK---VGRKGVVGRNADLQKALQEVNERKAILEEAEKKALR 61 (189)
Q Consensus 9 r~ElKkk~~~~~K~QKK---~RRKg~g~~~~~l~~~lqdvs~rq~elee~e~~~lR 61 (189)
+.||-..-++++.+-.+ +|+.|+| ..|+-.+....|.++..+|...+.+++-
T Consensus 57 r~~il~lc~ei~~lt~qLadLr~~GkG-~sPeA~~lA~qi~~kL~~L~~~v~~Av~ 111 (117)
T d1st6a4 57 RDDILRSLGEISALTAKLSDLRRHGKG-DSPEARALAKQIATSLQNLQSKTNRAVA 111 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCC-SSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777778877755 4888987 4677788888888888888888776654
No 8
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=42.03 E-value=57 Score=23.63 Aligned_cols=56 Identities=13% Similarity=0.086 Sum_probs=34.1
Q ss_pred HHhhhhhhhhhhccCcchHHHHHhhhchhHHHHHHHHHHHHhCCCCCCchHHHHHHHHhc
Q psy10344 65 IEERSRYCVFVTFLKPVVDEEVAMLSELSHLQEVMVQLEKHTSDPYSLPPASEQVMADMK 124 (189)
Q Consensus 65 lEERrRfCflV~~~~pVv~~ei~~~~e~~~Lqe~l~~w~~~~~dP~kLP~~seqvI~dlk 124 (189)
-.|..|+-++.+.+.-++..+..+ ...++..++.+...+..-+ ...+.+.+|...+
T Consensus 218 ~~e~~r~~~~k~~l~~~~~~~~~~---~~~~~~~~~~l~~~~~~id-~~~D~~~fi~~~~ 273 (288)
T d2efla1 218 EMEERRIVRMGESMKTYAEVDRQV---IPIIGKCLDGIVKAAESID-QKNDSQLVIEAYK 273 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHTCC-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHHHHCC-HHHHHHHHHHHcC
Confidence 347777777777655554432222 2455555666666665554 3567888888885
No 9
>d1st6a5 a.24.9.1 (A:489-646) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=33.12 E-value=85 Score=23.02 Aligned_cols=53 Identities=11% Similarity=0.181 Sum_probs=40.5
Q ss_pred HHHHHhhhhhhHHHHHHHh---hhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10344 8 ARSELKKRSTDTLRLQKKV---GRKGVVGRNADLQKALQEVNERKAILEEAEKKALR 61 (189)
Q Consensus 8 ~r~ElKkk~~~~~K~QKK~---RRKg~g~~~~~l~~~lqdvs~rq~elee~e~~~lR 61 (189)
.+.+|-..-+++..+--++ |++|+| ..|+-.+....|..+..+|...+.+++-
T Consensus 49 ~r~~Il~~C~el~~l~~~LadLr~~G~G-~sPeA~~lA~qi~~kL~dL~~~v~~Avv 104 (158)
T d1st6a5 49 YRQDLLAKCDRVDQLAAQLADLAARGEG-ESPQARAIAAQLQDSLKDLKARMQEAMT 104 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSTTSSCC-SSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677877778888777544 788887 4567777777799999998888877775
No 10
>d1st6a3 a.24.9.1 (A:253-371) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=32.86 E-value=68 Score=22.64 Aligned_cols=51 Identities=14% Similarity=0.157 Sum_probs=37.1
Q ss_pred HHHHHhhhhhhHHHHHHH---hhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q psy10344 8 ARSELKKRSTDTLRLQKK---VGRKGVVGRNADLQKALQEVNERKAILEEAEKKA 59 (189)
Q Consensus 8 ~r~ElKkk~~~~~K~QKK---~RRKg~g~~~~~l~~~lqdvs~rq~elee~e~~~ 59 (189)
.+.||.+.-+++..+--+ +|+.|+| ..|+-.+....|.++..+|..-+.++
T Consensus 65 ~r~~Il~~c~ei~~lt~qLadLr~~G~G-~sPeA~~lA~qi~~kL~~L~~~v~~A 118 (119)
T d1st6a3 65 ERREILGTCKTLGQMTDQLADLRARGQG-ATPMAMQKAQQVSQGLDLLTAKVENA 118 (119)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTTTTCC-CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 457777777788877744 4888887 46777777778888888877766554
No 11
>d2hzaa1 a.43.1.3 (A:1-48) Nickel responsive regulator NikR, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=22.85 E-value=26 Score=21.18 Aligned_cols=16 Identities=44% Similarity=0.569 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHhhh
Q psy10344 54 EAEKKALRAALIEERS 69 (189)
Q Consensus 54 e~e~~~lR~ALlEERr 69 (189)
+++++.+|+.|+|++-
T Consensus 30 EaIRdliR~~l~~~~~ 45 (48)
T d2hzaa1 30 EAIRDILRSALAQEAT 45 (48)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhH
Confidence 5788999999999873
No 12
>d2bj7a1 a.43.1.3 (A:1-50) Nickel responsive regulator NikR, N-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=20.49 E-value=28 Score=21.29 Aligned_cols=16 Identities=25% Similarity=0.385 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHhh
Q psy10344 53 EEAEKKALRAALIEER 68 (189)
Q Consensus 53 ee~e~~~lR~ALlEER 68 (189)
-+++++.+|+.|+|++
T Consensus 31 SEaIRdliR~~l~~~~ 46 (50)
T d2bj7a1 31 SEAIRDLIRDFIIRHE 46 (50)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3688899999999986
Done!