RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10344
(189 letters)
>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD,
protein binding; HET: MSE; 1.85A {Mus musculus}
Length = 253
Score = 110 bits (275), Expect = 4e-30
Identities = 63/123 (51%), Positives = 90/123 (73%), Gaps = 3/123 (2%)
Query: 3 KKYKKARSELKKRSTDTLRLQKKVGRKGVVGRNAD---LQKALQEVNERKAILEEAEKKA 59
K+YKKAR E+KK+S+DTL+LQKK + GR L ALQ+VN++ +LEE EK+A
Sbjct: 131 KEYKKARQEIKKKSSDTLKLQKKAKKVDAQGRGDIQPQLDSALQDVNDKYLLLEETEKQA 190
Query: 60 LRAALIEERSRYCVFVTFLKPVVDEEVAMLSELSHLQEVMVQLEKHTSDPYSLPPASEQV 119
+R ALIEER R+C F++ L+PV++EE++ML E++HLQ + L+ T DP+ LP +SEQV
Sbjct: 191 VRKALIEERGRFCTFISMLRPVIEEEISMLGEITHLQTISEDLKSLTMDPHKLPSSSEQV 250
Query: 120 MAD 122
+ D
Sbjct: 251 ILD 253
>2ykt_A Brain-specific angiogenesis inhibitor 1-associate protein 2;
signaling protein, NPY motif, binding pocket; 2.11A
{Homo sapiens} PDB: 1y2o_A 1wdz_A
Length = 253
Score = 99.6 bits (247), Expect = 4e-26
Identities = 25/127 (19%), Positives = 51/127 (40%), Gaps = 2/127 (1%)
Query: 2 LKKYKKARSELKKRSTDTLRLQKKVGRKGVVGRNAD-LQKALQEVNERKAILEEAEKKAL 60
+ + L K + +L+KK + +D + + ++ ++ LE
Sbjct: 127 QTEQRSKGDALDKCQAELKKLRKKSQGSKNPQKYSDKELQYIDAISNKQGELENYVSDGY 186
Query: 61 RAALIEERSRYCVFVTFLKPVVDEEVAMLSELSH-LQEVMVQLEKHTSDPYSLPPASEQV 119
+ AL EER R+C V V A S+ L + + ++ +DP +P + Q+
Sbjct: 187 KTALTEERRRFCFLVEKQCAVAKNSAAYHSKGKELLAQKLPLWQQACADPSKIPERAVQL 246
Query: 120 MADMKGS 126
M + +
Sbjct: 247 MQQVASN 253
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2;
I-BAR, protein binding; 2.25A {Mus musculus}
Length = 222
Score = 53.7 bits (128), Expect = 2e-09
Identities = 15/95 (15%), Positives = 40/95 (42%), Gaps = 15/95 (15%)
Query: 3 KKYKKARSELKKRSTDTLRLQKKVGRKGVVGRNADLQKALQEVNERKAILEEAEKKALRA 62
+Y+ + L+K ++ R+++K + ++ + VN A ++ ++ RA
Sbjct: 126 IEYRHRAANLEKCMSELWRMERKRDKN--------AREMKESVNRLHAQMQAFVSESKRA 177
Query: 63 ALIEERSRYCVFVTFLKPVVDEEVAMLSELSHLQE 97
A +EE+ RY + ++ + + +
Sbjct: 178 AELEEKRRYRF-------LAEKHLLLSNTFLQFLG 205
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.9 bits (103), Expect = 1e-05
Identities = 24/158 (15%), Positives = 47/158 (29%), Gaps = 52/158 (32%)
Query: 50 AILEEAEKKALRAALI-----------EE-RSRYCVFVTFLKPVVDEEVAMLSELSHLQE 97
A+ + + I EE R Y + + ++ LSEL
Sbjct: 144 ALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELI---- 199
Query: 98 VMVQLEKHTSDPYSLPPASEQVMADMKGSDTT----WLLPSPTS---------------- 137
+ T D + ++ ++ T +LL P S
Sbjct: 200 ------RTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTA 253
Query: 138 -----SPGSLGSRKS--SMCS---ISSINSSSSGSSKS 165
+PG L S + S ++++ + + S +S
Sbjct: 254 KLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWES 291
Score = 34.3 bits (78), Expect = 0.022
Identities = 18/131 (13%), Positives = 37/131 (28%), Gaps = 50/131 (38%)
Query: 30 GVVG-RNADLQKALQEVNERKAILEEAEKKALRAALIEERSRYCVFVTFLKPVVDEEVAM 88
+ +Q + + N K + +L+ V V+ P
Sbjct: 340 SISNLTQEQVQDYVNKTNSHLP-----AGKQVEISLVNGAKNL-V-VS--GPPQS----- 385
Query: 89 LSELSHLQEVMVQLEKHTSD--------PYS----------LP-----------PASEQV 119
L + + L K + P+S LP PAS+ +
Sbjct: 386 ------LYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLI 439
Query: 120 MADMKGSDTTW 130
D+ ++ ++
Sbjct: 440 NKDLVKNNVSF 450
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.8 bits (97), Expect = 6e-05
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 7/65 (10%)
Query: 2 LKKYKK----ARSELKKRSTDTLRLQKKVGRKGVVGRNADL-QKALQEVNERKAILEEAE 56
LK YK + ++ L K+ + + DL + AL E +AI EEA
Sbjct: 527 LKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALM--AEDEAIFEEAH 584
Query: 57 KKALR 61
K+ R
Sbjct: 585 KQVQR 589
Score = 31.0 bits (69), Expect = 0.28
Identities = 34/193 (17%), Positives = 63/193 (32%), Gaps = 38/193 (19%)
Query: 11 ELKKRSTDTLRLQKKVGRKGVVGRNADLQKALQEVNER------KAILEEAEKKALRAAL 64
K + TLRL + K +QK ++EV I E + ++ +
Sbjct: 56 MSKDAVSGTLRLFWTLLSKQ----EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM 111
Query: 65 -IEERSRYCVFVTFLKPVVDEEVAMLSELSHLQEVMVQLEKHTSDPYSLPPASEQVMADM 123
IE+R R + V+ L L++ +++L PA ++ +
Sbjct: 112 YIEQRDRLY---NDNQVFAKYNVSRLQPYLKLRQALLELR----------PAKNVLIDGV 158
Query: 124 KGSDTTWLLPSPTSSPG------------SLGSRKSSMCSISSINSSSSGSSKSHHSPSH 171
GS TW+ S +L + S + + + S S
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218
Query: 172 NYWN--RSIHQLK 182
+ N IH ++
Sbjct: 219 HSSNIKLRIHSIQ 231
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 32.9 bits (75), Expect = 0.060
Identities = 26/107 (24%), Positives = 48/107 (44%), Gaps = 6/107 (5%)
Query: 2 LKKYKKARSELKKRSTDTLRLQKKVGRKGVVGRNADLQKALQEVNERKAILEEAEKKALR 61
LKK +K+R EL+K L+ + + + A+LQ + E+ + A EE E +A
Sbjct: 1048 LKKEEKSRQELEKIKRK---LEGES--SDLHEQIAELQAQIAELKAQLAKKEE-ELQAAL 1101
Query: 62 AALIEERSRYCVFVTFLKPVVDEEVAMLSELSHLQEVMVQLEKHTSD 108
A L +E S+ + ++ + + +L + + EK D
Sbjct: 1102 ARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRD 1148
Score = 29.0 bits (65), Expect = 0.98
Identities = 14/105 (13%), Positives = 39/105 (37%), Gaps = 17/105 (16%)
Query: 1 MLKKYKKARSELKKRSTDTLRLQKKVGRKGVVGRNADLQKALQEVNERKAILEEAEKKAL 60
M + ++ ++ + ++Q+++ DL++ L+E + L+ EK
Sbjct: 932 MEARIEEEEERSQQLQAEKKKMQQQM---------LDLEEQLEEEEAARQKLQL-EKVTA 981
Query: 61 RAALIEERSRYCVFVTFLKPVVDEEVAMLSELSHLQEVMVQLEKH 105
+ + + + D+ + E L+E + L +
Sbjct: 982 DGKIKKMEDD-------ILIMEDQNNKLTKERKLLEERVSDLTTN 1019
Score = 28.3 bits (63), Expect = 1.9
Identities = 16/103 (15%), Positives = 38/103 (36%), Gaps = 10/103 (9%)
Query: 3 KKYKKARSELKKRSTDTLRLQKKVGRKGVVGRNADLQKALQEVNERKAILEEAEKKALRA 62
+ K+ + + + LQ+K+ + A+ ++ + +K LEE +
Sbjct: 878 AELKELEQKHTQLCEEKNLLQEKL--QAETELYAEAEEMRVRLAAKKQELEEILHEMEAR 935
Query: 63 ALIEERSRYCVFVTFLKPVVDEEVAMLSELSHLQEVMVQLEKH 105
EE + + E+ M ++ L+E + + E
Sbjct: 936 IEEEEER--------SQQLQAEKKKMQQQMLDLEEQLEEEEAA 970
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 32.8 bits (75), Expect = 0.068
Identities = 22/104 (21%), Positives = 37/104 (35%), Gaps = 13/104 (12%)
Query: 2 LKKYKKARSELKKRSTDTLRLQKKVGRKGVVGRNADLQKALQEVNERKAILEEAEKKALR 61
LK ++ KK L+ K+ LQ+ + E N+ L E + L
Sbjct: 909 LKIEARSVERYKKLHIG---LENKI---------MQLQRKIDEQNKEYKSLLE-KMNNLE 955
Query: 62 AALIEERSRYCVFVTFLKPVVDEEVAMLSELSHLQEVMVQLEKH 105
E + V L+ +E + + LQE + +L K
Sbjct: 956 ITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKE 999
Score = 29.3 bits (66), Expect = 0.96
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Query: 3 KKYKKARSELKKRSTDTLRLQKKVGRKGVVGRNADLQKALQEVNERKAILEEAEKKALRA 62
+ ++ SELK+++T ++++ R+ D K + E E+K E K L
Sbjct: 1019 HETEQLVSELKEQNTLLKTEKEELNRR-----IHDQAKEITETMEKKL---VEETKQLEL 1070
Query: 63 ALIEERSRY 71
L +ER RY
Sbjct: 1071 DLNDERLRY 1079
>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers,
NAD binding DOMA amino acid insertional region,
hydrolase; HET: ADN NAD; 1.60A {Mycobacterium
tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*
Length = 494
Score = 29.4 bits (66), Expect = 0.65
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 7/49 (14%)
Query: 63 ALIE---ERSRYCVFVTFLKPVVDEEVAMLSELSHLQEVMVQLEKHTSD 108
A IE + Y V L +DE+VA + H++ + L K T +
Sbjct: 430 AQIELWTKNDEYDNEVYRLPKHLDEKVARI----HVEALGGHLTKLTKE 474
>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics,
seattle structural G center for infectious disease; HET:
ADN NAD; 2.39A {Brucella melitensis biovar abortus}
Length = 464
Score = 29.2 bits (66), Expect = 0.74
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 64 LIEERSRYCVFVTFLKPVVDEEVAMLSELSHLQEVMVQLEKHTSD 108
L Y V L +DE+VA L HL ++ +L + +
Sbjct: 404 LFTRTDAYKNEVYVLPKHLDEKVARL----HLDKLGAKLTVLSEE 444
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase
inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB:
1t6g_A 2b42_A 3hd8_A
Length = 381
Score = 29.0 bits (64), Expect = 0.91
Identities = 7/48 (14%), Positives = 14/48 (29%), Gaps = 1/48 (2%)
Query: 125 GSDTTWLLPSPTSSPGSLGSRKSSMCSISSINSSSSGSSKSHHSPSHN 172
W P + S C +++ + + S S H+
Sbjct: 31 AGPLVWSTCDGGQPPAEI-PCSSPTCLLANAYPAPGCPAPSCGSDKHD 77
>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex,
NAD cofactor, regul SAM-dependent methylation reactions;
HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A*
3onf_A*
Length = 488
Score = 29.0 bits (65), Expect = 0.94
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 9/51 (17%)
Query: 63 ALIE-----ERSRYCVFVTFLKPVVDEEVAMLSELSHLQEVMVQLEKHTSD 108
A +E +Y V L +DE+VA L HL+++ +L K + D
Sbjct: 422 AQLELWNEKSSGKYEKKVYVLPKHLDEKVAAL----HLEKLGAKLTKLSKD 468
>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid,
S-adenosyl-L-homocysteine hydro NAD, one-carbon
metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei}
PDB: 3glq_A*
Length = 494
Score = 28.6 bits (64), Expect = 1.3
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Query: 63 ALIE---ERSRYCVFVTFLKPVVDEEVAMLSELSHLQEVMVQLEKHTSD 108
A IE Y V L +DE+VA L HL + QL + + D
Sbjct: 430 AQIELFTRGGEYANKVYVLPKHLDEKVARL----HLARIGAQLSELSDD 474
>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium
falciparum} SCOP: c.2.1.4 c.23.12.3
Length = 479
Score = 28.6 bits (64), Expect = 1.3
Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 9/51 (17%)
Query: 63 ALIE-----ERSRYCVFVTFLKPVVDEEVAMLSELSHLQEVMVQLEKHTSD 108
A ++ + ++Y V L +DE+VA+ HL+++ L + +
Sbjct: 413 AQLDLWQNKDTNKYENKVYLLPKHLDEKVALY----HLKKLNASLTELDDN 459
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Length = 326
Score = 27.6 bits (62), Expect = 2.1
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 3 KKYKKARSELKKRSTDTLRLQKKVGRKGVVGRNADLQKALQEVNERKAILEEAEKKALRA 62
YK+ +K DT+ K+G V R +K + E EE +LR
Sbjct: 218 PVYKEKI--VKASIRDTVVTGAKLGHPARVLRTPFARKIQEMEFENPMQAEEMLVGSLRR 275
Query: 63 ALIE 66
A++E
Sbjct: 276 AVVE 279
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 27.9 bits (62), Expect = 2.6
Identities = 19/93 (20%), Positives = 31/93 (33%), Gaps = 6/93 (6%)
Query: 36 ADLQKALQEVNERKAIL-----EEAEKKALRAALIEERSRYCVFVTFLKPVVDEEVAMLS 90
ADL LQ V E K E E +R A+ E + V +
Sbjct: 725 ADLNGGLQFVPELKEFTAKLRKELVETSEVRKAVSIETALEHKVVNGNSADAAYAQVEIQ 784
Query: 91 ELSHLQEVMVQLEKHTSDPYSLPPASEQVMADM 123
+++Q +L+ + P E + D+
Sbjct: 785 PRANIQLDFPELKPYKQVKQIAPAELE-GLLDL 816
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase
domain, transferase; HET: MSE ADP; 2.10A {Bacillus
subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Length = 218
Score = 26.8 bits (60), Expect = 3.7
Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 39 QKALQEVNERKAILEEAEKKALRAALIEERSR 70
+K + + E+ LE+A ++ +EER R
Sbjct: 2 RKERERLEEK---LEDANERIAELVKLEERQR 30
>1ss6_A P47, NSFL1 cofactor P47, P47 protein, P97; , SEP, signaling
protein; NMR {Homo sapiens} SCOP: d.245.1.1
Length = 102
Score = 26.0 bits (57), Expect = 3.7
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 77 FLKPVVDEEVAM-LSELSHLQEVMVQLEKHTSDPYSLPP 114
FL+ + EV L L+H +V + +E H + + P
Sbjct: 41 FLESIRRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPK 79
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.5 bits (57), Expect = 3.8
Identities = 6/27 (22%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
Query: 3 KKYKKARSELKKRSTDT---LRLQKKV 26
+ KK ++ LK + D+ L ++ +
Sbjct: 20 QALKKLQASLKLYADDSAPALAIKATM 46
Score = 25.3 bits (54), Expect = 9.9
Identities = 8/43 (18%), Positives = 18/43 (41%), Gaps = 17/43 (39%)
Query: 117 EQVMADMKGSDTTWL-LPSPTSSPGSLGSRKSSMCSISSINSS 158
+Q + ++ S L L + S+P +L +I ++
Sbjct: 19 KQALKKLQAS----LKLYADDSAP-AL-----------AIKAT 45
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C,
TPR-containing domain, structural genomics; 1.63A
{Plasmodium falciparum} SCOP: a.118.8.1
Length = 198
Score = 26.7 bits (59), Expect = 4.0
Identities = 7/60 (11%), Positives = 17/60 (28%), Gaps = 13/60 (21%)
Query: 2 LKKYKKARSELKKRSTDTLRLQKKVGRKGVVGRNADLQKALQEVNERKAILEEAEKKALR 61
++A+ L K L N D++ + + + + +K
Sbjct: 135 FGFLEEAKENLYK----AASLNPN---------NLDIRNSYELCVNKLKEARKKDKLTFG 181
>3ce2_A Putative peptidase; structural genomics, unknown function, P
protein structure initiative; 2.60A {Chlamydophila
abortus}
Length = 618
Score = 27.0 bits (60), Expect = 4.6
Identities = 16/148 (10%), Positives = 42/148 (28%), Gaps = 20/148 (13%)
Query: 3 KKYKKARSELKKRSTDTLRLQKKVGRKGVVGRNADLQKALQEVNERKAILEE-------- 54
K +K ++ + + + + L L + + L +
Sbjct: 34 KAWKADLDSFGLKTDGSPTWPALQATQYQLDNSESLLSLLTTLFSIERKLNKLYVYAHLT 93
Query: 55 -------AEKKALRAALIEERSRYCVFVTFLKP----VVDEEVAMLSELSHLQEVMVQLE 103
E A ++ + + ++++P + + +A L LE
Sbjct: 94 HDQDITNQEGIADLKSITHLHTLFAEETSWVQPALTSLSESLIAQHLSAPCLAPYRFYLE 153
Query: 104 KHTSD-PYSLPPASEQVMADMKGSDTTW 130
K ++ P E+++A
Sbjct: 154 KIFRLSIHTGTPGEEKILASAFTPLEVA 181
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein,
structural genomics, PSI- 2, protein structure
initiative; 3.00A {Corynebacterium diphtheriae}
Length = 583
Score = 26.9 bits (59), Expect = 5.4
Identities = 9/61 (14%), Positives = 17/61 (27%), Gaps = 7/61 (11%)
Query: 34 RNADLQKALQEVN--ER-----KAILEEAEKKALRAALIEERSRYCVFVTFLKPVVDEEV 86
R L + + ++ + + R IEE + V T + V
Sbjct: 355 RYPALADLYRALGLVDKQGVGVDRMYQAMIALGHRPPTIEEIAGPFVETTLVGGRPVLPV 414
Query: 87 A 87
Sbjct: 415 L 415
>3nwc_A SMC protein; structural maintenance of chromosomes (SMC), SMC
hinge domai dimerization, DNA binding, cell cycle;
1.70A {Pyrococcus furiosus}
Length = 189
Score = 26.1 bits (58), Expect = 6.4
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 3 KKYKKARSELKKRSTDTLRLQKKVGRKGVVGRNADL 38
++ A ++ + R K+ G G+ G A+L
Sbjct: 8 RELIAAEAQREVRGNRAAEELKRSGIGGIYGTLAEL 43
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 26.3 bits (57), Expect = 6.5
Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 15/81 (18%)
Query: 6 KKARSELKKRSTDTLRLQKKVGRKGVVGRNADLQKALQEVNERKAILEEAEKKALRAALI 65
+K R E +KR LQ+ V +KA +++ E E +K I
Sbjct: 88 RKWREEQRKR------LQEL-DAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRI 140
Query: 66 EERSRYCVFVTFLKPVVDEEV 86
+++ F + D ++
Sbjct: 141 ADKA-------FYQQ-PDADI 153
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 26.4 bits (58), Expect = 7.0
Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 13/60 (21%)
Query: 2 LKKYKKARSELKKRSTDTLRLQKKVGRKGVVGRNADLQKALQEVNERKAILEEAEKKALR 61
+ ++ AR++ +K L+L N + L +R EKK
Sbjct: 243 VNDFELARADFQK----VLQLYPN---------NKAAKTQLAVCQQRIRRQLAREKKLYA 289
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 26.2 bits (57), Expect = 8.0
Identities = 5/60 (8%), Positives = 21/60 (35%), Gaps = 13/60 (21%)
Query: 2 LKKYKKARSELKKRSTDTLRLQKKVGRKGVVGRNADLQKALQEVNERKAILEEAEKKALR 61
+ +++ A+ + +K L + + N + + ++ E +++
Sbjct: 364 MNEFESAKGDFEK----VLEVNPQ---------NKAARLQISMCQKKAKEHNERDRRIYA 410
>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase,
NAD, one-carbon metabolism, phosphoprotein; HET: NAD;
2.25A {Homo sapiens} PDB: 3mtg_A*
Length = 435
Score = 26.1 bits (58), Expect = 9.3
Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 8/50 (16%)
Query: 63 ALIE----ERSRYCVFVTFLKPVVDEEVAMLSELSHLQEVMVQLEKHTSD 108
ALIE RY V L +DE VA L HL L + T +
Sbjct: 374 ALIELYNAPEGRYKQDVYLLPKKMDEYVASL----HLPTFDAHLTELTDE 419
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.310 0.123 0.340
Gapped
Lambda K H
0.267 0.0599 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,740,276
Number of extensions: 152508
Number of successful extensions: 332
Number of sequences better than 10.0: 1
Number of HSP's gapped: 325
Number of HSP's successfully gapped: 56
Length of query: 189
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 101
Effective length of database: 4,244,745
Effective search space: 428719245
Effective search space used: 428719245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (24.9 bits)