RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10344
(189 letters)
>d1y2oa1 a.238.1.3 (A:1-248) BAP2/IRSp53 N-terminal domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 248
Score = 82.8 bits (204), Expect = 3e-20
Identities = 25/125 (20%), Positives = 50/125 (40%), Gaps = 2/125 (1%)
Query: 1 MLKKYKKARSELKKRSTDTLRLQKKVGRKGVVGRNAD-LQKALQEVNERKAILEEAEKKA 59
+ + L K + +L+KK + +D + + ++ ++ LE
Sbjct: 123 YQTEQRSKGDALDKCQAELKKLRKKSQGSKNPQKYSDKELQYIDAISNKQGELENYVSDG 182
Query: 60 LRAALIEERSRYCVFVTFLKPVVDEEVAMLSELSH-LQEVMVQLEKHTSDPYSLPPASEQ 118
+ AL EER R+C V V A S+ L + + ++ +DP +P + Q
Sbjct: 183 YKTALTEERRRFCFLVEKQCAVAKNSAAYHSKGKELLAQKLPLWQQACADPSKIPERAVQ 242
Query: 119 VMADM 123
+M +
Sbjct: 243 LMQQV 247
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum
aestivum) [TaxId: 4565]}
Length = 381
Score = 30.8 bits (68), Expect = 0.079
Identities = 7/48 (14%), Positives = 14/48 (29%), Gaps = 1/48 (2%)
Query: 125 GSDTTWLLPSPTSSPGSLGSRKSSMCSISSINSSSSGSSKSHHSPSHN 172
W P + S C +++ + + S S H+
Sbjct: 31 AGPLVWSTCDGGQPPAEI-PCSSPTCLLANAYPAPGCPAPSCGSDKHD 77
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans)
[TaxId: 5476]}
Length = 342
Score = 29.1 bits (64), Expect = 0.27
Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 2/58 (3%)
Query: 113 PPASEQVMADMKGSDTTWLLPSPTSSPGSLGSRKSSMCSISSI-NSSSSGSSKSHHSP 169
V+ D GS W+ + + + C + S S +S+ ++P
Sbjct: 23 NNQKLNVIVDT-GSSDLWVPDVNVDCQVTYSDQTADFCKQKGTYDPSGSSASQDLNTP 79
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis)
[TaxId: 5482]}
Length = 334
Score = 28.7 bits (63), Expect = 0.36
Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 113 PPASEQVMADMKGSDTTWLLPSPTSSPGSLGSRKSSMCSISSI-NSSSSGSSKS 165
+ V+ D GS W++ + + + ++ C + SSS S+++
Sbjct: 23 NQQKQTVVIDT-GSSDLWVVDTDAECQVTYSGQTNNFCKQEGTFDPSSSSSAQN 75
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus
tulipiferae), Polyporopepsin [TaxId: 5319]}
Length = 340
Score = 28.4 bits (62), Expect = 0.59
Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 3/68 (4%)
Query: 113 PPASEQVMADMKGSDTTWLLPSPTSSPGSLGSRKSSMCSISSINSSSSG--SSKSHHSPS 170
P + ++ D GS TWL + S S S S++ + S SG + + S
Sbjct: 23 PATTYSLLVDT-GSSNTWLGADKSYVKTSTSSATSDKVSVTYGSGSFSGTEYTDTVTLGS 81
Query: 171 HNYWNRSI 178
+SI
Sbjct: 82 LTIPKQSI 89
>d1xksa_ b.69.14.1 (A:) Nuclear pore complex protein Nup133 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 403
Score = 28.3 bits (63), Expect = 0.63
Identities = 13/72 (18%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Query: 118 QVMADMKGSDTTWLLPSPTSSPGSLGSRKSSMCSISSINSSSSGSSKSHHSPSHNYWNRS 177
+++ + G +LP +G + SS+ I S +S + SS ++++ +
Sbjct: 157 RLIPESSGKIHQHILPQGQGMLSGIGRKVSSLFGILSPSSDLTLSSVLWDRERSSFYSLT 216
Query: 178 IHQLKISWEIQN 189
+ WE+ +
Sbjct: 217 SSNISK-WELDD 227
>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable
domain, VL-kappa {Mouse (Mus musculus), cluster 1.1
[TaxId: 10090]}
Length = 112
Score = 27.3 bits (60), Expect = 0.66
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 134 SPTSSPGSLGSRKSSMCSISSINSSSSGSSKSH 166
SP + ++G S C S +S+G + +
Sbjct: 7 SPKTISVTIGQPASISCKSSQRLLNSNGKTFLN 39
>d1li4a2 c.23.12.3 (A:3-189,A:353-432) S-adenosylhomocystein
hydrolase {Human (Homo sapiens) [TaxId: 9606]}
Length = 267
Score = 27.5 bits (61), Expect = 1.1
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 64 LIEERSRYCVFVTFLKPVVDEEVAMLSELSHLQEVMVQLEKHTSD 108
L +Y V V FL +DE VA HL ++ V+L K T
Sbjct: 207 LWTHPDKYPVGVHFLPKKLDEAVAEA----HLGKLNVKLTKLTEK 247
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme)
{Plasmodium vivax [TaxId: 5855]}
Length = 373
Score = 26.8 bits (58), Expect = 1.8
Identities = 8/58 (13%), Positives = 16/58 (27%), Gaps = 1/58 (1%)
Query: 113 PPASEQVMADMKGSDTTWLLPSPTSSPGSLGSRKSSMCSISSINSSSSGSSKSHHSPS 170
++ D GS W+ +S G S + ++ S +
Sbjct: 71 NHQKFMLIFDT-GSANLWVPSKKCNSSGCSIKNLYDSSKSKSYEKDGTKVDITYGSGT 127
>d1ss6a_ d.245.1.1 (A:) NSFL1 (p97 ATPase) cofactor p47, SEP domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 25.5 bits (56), Expect = 1.9
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 77 FLKPVVDEEVAM-LSELSHLQEVMVQLEKHTSDPYSLPP 114
FL+ + EV L L+H +V + +E H + + P
Sbjct: 41 FLESIRRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPK 79
>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable
domain, VL-kappa {Mouse (Mus musculus), cluster 4
[TaxId: 10090]}
Length = 108
Score = 25.1 bits (54), Expect = 3.5
Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 2/54 (3%)
Query: 134 SPTSSPGSLGSRKSSMCSISSINSSSSG--SSKSHHSPSHNYWNRSIHQLKISW 185
SP+ S G + C S S S K + + ++ S Q I
Sbjct: 7 SPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPS 60
>d1o20a_ c.82.1.1 (A:) Gamma-glutamyl phosphate reductase
{Thermotoga maritima [TaxId: 2336]}
Length = 414
Score = 25.8 bits (55), Expect = 3.9
Identities = 12/69 (17%), Positives = 27/69 (39%), Gaps = 14/69 (20%)
Query: 1 MLKKYKKARSELKKRSTDTLRLQKKVGRKGVVGRNADLQKALQEVNERKAILEEAEKKAL 60
KK ++A L+ +T +N ++K ++++ER+ + EA + +
Sbjct: 6 KAKKVREAWDVLRNATTRE--------------KNKAIKKIAEKLDERRKEILEANRIDV 51
Query: 61 RAALIEERS 69
A
Sbjct: 52 EKARERGVK 60
>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable
domain, VL-kappa {Mouse (Mus musculus), cluster 1.1
[TaxId: 10090]}
Length = 113
Score = 24.6 bits (53), Expect = 5.2
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 134 SPTSSPGSLGSRKSSMCSISSINSSSSGSSKSH 166
+P P SLG + S C S ++G++
Sbjct: 8 TPLYLPVSLGDQASISCRSSQTIVHNNGNTYLE 40
>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus)
[TaxId: 9913]}
Length = 169
Score = 25.0 bits (53), Expect = 5.3
Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 13/59 (22%)
Query: 1 MLKKYKKARSELKKRSTDTLRLQKKVGRKGVVGRNADLQKALQEVNERKAILEEAEKKA 59
LK+Y +A ++LKK + + + +Q L +V ++ ++ EK A
Sbjct: 123 GLKEYDQALADLKK----AQEIAPE---------DKAIQAELLKVKQKIKAQKDKEKAA 168
>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable
domain, VL-kappa {Mouse (Mus musculus), cluster 1.1
[TaxId: 10090]}
Length = 112
Score = 24.6 bits (53), Expect = 5.3
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 134 SPTSSPGSLGSRKSSMCSISSINSSSSGSS 163
+ S P + G S C S S+G++
Sbjct: 7 AAPSVPVTPGESVSISCRSSKSLLHSNGNT 36
>d1fuoa_ a.127.1.1 (A:) Fumarase {Escherichia coli [TaxId: 562]}
Length = 456
Score = 25.1 bits (54), Expect = 6.4
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 36 ADLQKALQEVNERKAILEEAEKKALRAALIE 66
A ++A +VNE +L E + A+R A E
Sbjct: 46 ALTKRAAAKVNEDLGLLSEEKASAIRQAADE 76
>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable
domain, VL-kappa {Mouse (Mus musculus), cluster 4
[TaxId: 10090]}
Length = 107
Score = 24.0 bits (51), Expect = 6.9
Identities = 9/47 (19%), Positives = 13/47 (27%)
Query: 134 SPTSSPGSLGSRKSSMCSISSINSSSSGSSKSHHSPSHNYWNRSIHQ 180
S +S SLG R + C S S + +
Sbjct: 7 SSSSFSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATS 53
>d2q22a1 d.365.1.1 (A:8-138) Uncharacterized protein Ava3019
{Anabaena variabilis [TaxId: 1172]}
Length = 131
Score = 24.0 bits (52), Expect = 8.8
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 36 ADLQKALQEVN--ERKAILEEAEKKALRAALIE 66
AD +K L + N + IL+ +EK+++R ALI
Sbjct: 5 ADAKKILNKFNCLDIAPILKPSEKESVRRALIL 37
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.310 0.123 0.340
Gapped
Lambda K H
0.267 0.0657 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 656,450
Number of extensions: 28151
Number of successful extensions: 116
Number of sequences better than 10.0: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 30
Length of query: 189
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 109
Effective length of database: 1,309,196
Effective search space: 142702364
Effective search space used: 142702364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 50 (23.2 bits)