BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10345
(221 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore
State
Length = 263
Score = 87.8 bits (216), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 98/210 (46%), Gaps = 29/210 (13%)
Query: 27 AEILGTFGLMFFGCMSCIGGFSQGSVPSLQPALMFGFVVSTIITIFGHISSAHLNPSVTV 86
AE T +FFG + + ++ G + LQ AL FG ++T++ GHIS AH+NP+VT
Sbjct: 15 AEFFATLFYVFFGLGASLR-WAPGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTF 73
Query: 87 AAFMLGDISVADALVYVMAQLIGAVLGYATLGHHGIPMLWQSEVLKFIFPWLNLXXXXXX 146
A + +S+ A+ YV+AQL+GAV G A L P + + L + P +++
Sbjct: 74 AFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVGQATIV 133
Query: 147 XXXXXXSI-----ATYYQLYQVNGP---------------------YTGASMNAARSIAP 180
ATY + + NG YTGA MN ARS AP
Sbjct: 134 EIFLTLQFVLCIFATYDE--RRNGRLGSVALAVGFSLTLGHLFGMYYTGAGMNPARSFAP 191
Query: 181 AFINNIWTKQWIYWTAPTLAGTVTPLIYTY 210
A + +T W+YW P + + L+Y +
Sbjct: 192 AILTRNFTNHWVYWVGPVIGAGLGSLLYDF 221
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A
Closed Water Pore
Length = 235
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 98/210 (46%), Gaps = 29/210 (13%)
Query: 27 AEILGTFGLMFFGCMSCIGGFSQGSVPSLQPALMFGFVVSTIITIFGHISSAHLNPSVTV 86
AE T +FFG + + ++ G + LQ AL FG ++T++ GHIS AH+NP+VT
Sbjct: 11 AEFFATLFYVFFGLGASLR-WAPGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTF 69
Query: 87 AAFMLGDISVADALVYVMAQLIGAVLGYATLGHHGIPMLWQSEVLKFIFPWLNLXXXXXX 146
A + +S+ A+ YV+AQL+GAV G A L P + + L + P +++
Sbjct: 70 AFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVGQATIV 129
Query: 147 XXXXXXSI-----ATYYQLYQVNGP---------------------YTGASMNAARSIAP 180
ATY + + NG YTGA MN ARS AP
Sbjct: 130 EIFLTLQFVLCIFATYDE--RRNGRLGSVALAVGFSLTLGHLFGMYYTGAGMNPARSFAP 187
Query: 181 AFINNIWTKQWIYWTAPTLAGTVTPLIYTY 210
A + +T W+YW P + + L+Y +
Sbjct: 188 AILTRNFTNHWVYWVGPVIGAGLGSLLYDF 217
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution
From Electron Micrograph
Length = 340
Score = 86.7 bits (213), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 87/195 (44%), Gaps = 33/195 (16%)
Query: 58 ALMFGFVVSTIITIFGHISSAHLNPSVTVAAFMLGDISVADALVYVMAQLIGAVLGYATL 117
+L FG ++T++ FGHIS H+NP+VTVA IS+A ++ Y+ AQ +GA++G L
Sbjct: 91 SLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGIL 150
Query: 118 ---------GHHGIPM----------LWQSEVLKFIFPWLNLXXXXXXXXXXXXSIA--- 155
G G+ L ++ F + S+A
Sbjct: 151 YLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSVALAI 210
Query: 156 ----TYYQLYQVNGPYTGASMNAARSIAPAFINNIWTKQWIYWTAPTLAGTVTPLIYTYA 211
L+ +N YTGASMN ARS PA I W WIYW P + + +Y Y
Sbjct: 211 GFSVAIGHLFAIN--YTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYV 268
Query: 212 F-----ERKRLEKQF 221
F ++RL++ F
Sbjct: 269 FCPDVELKRRLKEAF 283
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp Mip) In E. Coli Polar Lipids
Length = 220
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 98/210 (46%), Gaps = 29/210 (13%)
Query: 27 AEILGTFGLMFFGCMSCIGGFSQGSVPSLQPALMFGFVVSTIITIFGHISSAHLNPSVTV 86
AE T +FFG + + ++ G + LQ AL FG ++T++ GHIS AH+NP+VT
Sbjct: 9 AEFFATLFYVFFGLGASLR-WAPGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTF 67
Query: 87 AAFMLGDISVADALVYVMAQLIGAVLGYATLGHHGIPMLWQSEVLKFIFPWLNLXXXXXX 146
A + +S+ A+ YV+AQL+GAV G A L P + + L + P +++
Sbjct: 68 AFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVGQATIV 127
Query: 147 XXXXXXSI-----ATYYQLYQVNGP---------------------YTGASMNAARSIAP 180
ATY + + NG YTGA MN ARS AP
Sbjct: 128 EIFLTLQFVLCIFATYDE--RRNGRLGSVALAVGFSLTLGHLFGMYYTGAGMNPARSFAP 185
Query: 181 AFINNIWTKQWIYWTAPTLAGTVTPLIYTY 210
A + +T W+YW P + + L+Y +
Sbjct: 186 AILTRNFTNHWVYWVGPVIGAGLGSLLYDF 215
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4
(Aqp4m23) At 3.2 A Resolution By Electron
Crystallography
Length = 301
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 87/195 (44%), Gaps = 33/195 (16%)
Query: 58 ALMFGFVVSTIITIFGHISSAHLNPSVTVAAFMLGDISVADALVYVMAQLIGAVLGYATL 117
+L FG ++T++ FGHIS H+NP+VTVA IS+A ++ Y+ AQ +GA++G L
Sbjct: 52 SLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGIL 111
Query: 118 ---------GHHGIPM----------LWQSEVLKFIFPWLNLXXXXXXXXXXXXSIATYY 158
G G+ L ++ F + S+A
Sbjct: 112 YLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSVALAI 171
Query: 159 -------QLYQVNGPYTGASMNAARSIAPAFINNIWTKQWIYWTAPTLAGTVTPLIYTYA 211
L+ +N YTGASMN ARS PA I W WIYW P + + +Y Y
Sbjct: 172 GFSVAIGHLFAIN--YTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYV 229
Query: 212 F-----ERKRLEKQF 221
F ++RL++ F
Sbjct: 230 FCPDVELKRRLKEAF 244
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution
By Electron Crystallography
Length = 301
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 87/195 (44%), Gaps = 33/195 (16%)
Query: 58 ALMFGFVVSTIITIFGHISSAHLNPSVTVAAFMLGDISVADALVYVMAQLIGAVLGYATL 117
+L FG ++T++ FGHIS H+NP+VTVA IS+A ++ Y+ AQ +GA++G L
Sbjct: 52 SLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGIL 111
Query: 118 ---------GHHGIPM----------LWQSEVLKFIFPWLNLXXXXXXXXXXXXSIA--- 155
G G+ L ++ F + S+A
Sbjct: 112 YLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSVALAI 171
Query: 156 ----TYYQLYQVNGPYTGASMNAARSIAPAFINNIWTKQWIYWTAPTLAGTVTPLIYTYA 211
L+ +N YTGASMN ARS PA I W WIYW P + + +Y Y
Sbjct: 172 GFSVAIGHLFAIN--YTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYV 229
Query: 212 F-----ERKRLEKQF 221
F ++RL++ F
Sbjct: 230 FCPDVELKRRLKEAF 244
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom
Resolution
pdb|2B6P|A Chain A, X-Ray Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) In
An Open Pore State
pdb|2C32|A Chain A, Co-Axial Association Of Recombinant Eye Lens Aquaporin-0
Observed In Loosely Packed 3d-Crystals
Length = 263
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 100/213 (46%), Gaps = 30/213 (14%)
Query: 24 ICLAEILGTFGLMFFGCMSCIGGFSQGSVPSLQPALMFGFVVSTIITIFGHISSAHLNPS 83
IC AE + +FFG + + ++ G + LQ AL FG ++T++ GHIS AH+NP+
Sbjct: 13 IC-AEFFASLFYVFFGLGASLR-WAPGPLHVLQVALAFGLALATLVQAVGHISGAHVNPA 70
Query: 84 VTVAAFMLGDISVADALVYVMAQLIGAVLGYATLGHHGIPMLWQSEVLKFIFPWLNLXXX 143
VT A + +S+ A+ Y++AQL+GAV G A L P + + L + P +++
Sbjct: 71 VTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVGQA 130
Query: 144 XXXXXXXXXS-----IATYYQLYQVNGP---------------------YTGASMNAARS 177
ATY + + NG YTGA MN ARS
Sbjct: 131 TIVEIFLTLQFVLCIFATYDE--RRNGRLGSVALAVGFSLTLGHLFGMYYTGAGMNPARS 188
Query: 178 IAPAFINNIWTKQWIYWTAPTLAGTVTPLIYTY 210
APA + +T W+YW P + + L+Y +
Sbjct: 189 FAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDF 221
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its
Mechanism Of Conductance
Length = 223
Score = 84.3 bits (207), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 58 ALMFGFVVSTIITIFGHISSAHLNPSVTVAAFMLGDISVADALVYVMAQLIGAVLGYATL 117
+L FG ++T++ FGHIS H+NP+VTVA IS+A ++ Y+ AQ +GA++G L
Sbjct: 43 SLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGIL 102
Query: 118 ---------GHHGIPM----------LWQSEVLKFIFPWLNLXXXXXXXXXXXXSIATYY 158
G G+ M L ++ F + SIA
Sbjct: 103 YLVTPPSVVGGLGVTMVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIALAI 162
Query: 159 -------QLYQVNGPYTGASMNAARSIAPAFINNIWTKQWIYWTAPTLAGTVTPLIYTYA 211
L+ +N YTGASMN ARS PA I W WIYW P + + +Y Y
Sbjct: 163 GFSVAIGHLFAIN--YTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGGLYEYV 220
Query: 212 F 212
F
Sbjct: 221 F 221
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|B Chain B, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|C Chain C, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|D Chain D, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
Length = 266
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 98/217 (45%), Gaps = 32/217 (14%)
Query: 22 LEICLAEILGTFGLMFFGCMSCIGGFSQGSVPS-LQPALMFGFVVSTIITIFGHISSAHL 80
L+ AE L T +FFG S + S ++P+ LQ AL FG + T+ G +S H+
Sbjct: 12 LKAVFAEFLATLIFVFFGLGSALKWPS--ALPTILQIALAFGLAIGTLAQALGPVSGGHI 69
Query: 81 NPSVTVAAFMLGDISVADALVYVMAQLIGAVLGYATLGHHGIPML--------------- 125
NP++T+A + IS+ A YV AQL+GA+ G L +G+ L
Sbjct: 70 NPAITLALLVGNQISLLRAFFYVAAQLVGAIAGAGIL--YGVAPLNARGNLAVNALNNNT 127
Query: 126 --WQSEVLKFIFPW-LNLXXXXXXXXXXXX-------SIATYYQLYQVNGPY-TGASMNA 174
Q+ V++ I + L L SI L + G Y TG SMN
Sbjct: 128 TQGQAMVVELILTFQLALCIFASTDSRRTSPVGSPALSIGLSVTLGHLVGIYFTGCSMNP 187
Query: 175 ARSIAPAFINNIWT-KQWIYWTAPTLAGTVTPLIYTY 210
ARS PA + N ++ W++W P + + ++Y Y
Sbjct: 188 ARSFGPAVVMNRFSPAHWVFWVGPIVGAVLAAILYFY 224
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron
Crystallography
pdb|1IH5|A Chain A, Crystal Structure Of Aquaporin-1
pdb|1H6I|A Chain A, A Refined Structure Of Human Aquaporin 1
Length = 269
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 97/215 (45%), Gaps = 30/215 (13%)
Query: 26 LAEILGTFGLMFFGCMSCIG-----GFSQGSV-PSLQPALMFGFVVSTIITIFGHISSAH 79
+AE L T +F S +G G +Q +V +++ +L FG ++T+ GHIS AH
Sbjct: 15 VAEFLATTLFVFISIGSALGFKYPVGNNQTAVQDNVKVSLAFGLSIATLAQSVGHISGAH 74
Query: 80 LNPSVTVAAFMLGDISVADALVYVMAQLIGAVLGYA------------TLGHHGIPMLWQ 127
LNP+VT+ + IS+ AL+Y++AQ +GA++ A +LG + +
Sbjct: 75 LNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITSSLTGNSLGRNDLADGVN 134
Query: 128 S---------EVLKFIFPWLNLXXXXXXXXXXXXSIATYYQL---YQVNGPYTGASMNAA 175
S L+ + L +A + + + YTG +N A
Sbjct: 135 SGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGSAPLAIGLSVALGHLLAIDYTGCGINPA 194
Query: 176 RSIAPAFINNIWTKQWIYWTAPTLAGTVTPLIYTY 210
RS A I + ++ WI+W P + G + LIY +
Sbjct: 195 RSFGSAVITHNFSNHWIFWVGPFIGGALAVLIYDF 229
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel
Length = 271
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 79/181 (43%), Gaps = 24/181 (13%)
Query: 54 SLQPALMFGFVVSTIITIFGHISSAHLNPSVTVAAFMLGDISVADALVYVMAQLIGAVLG 113
+++ +L FG ++T+ GHIS AHLNP+VT+ + ISV A++Y++AQ +GA++
Sbjct: 51 NVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVA 110
Query: 114 YATLGHHGIPMLWQSEVLKFIFPWLN--------LXXXXXXXXXXXXSIATYYQLYQVNG 165
A L + S L + P +N + + + +G
Sbjct: 111 TAILSGITSSLPDNSLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGSG 170
Query: 166 P----------------YTGASMNAARSIAPAFINNIWTKQWIYWTAPTLAGTVTPLIYT 209
P YTG +N ARS + I + + WI+W P + + LIY
Sbjct: 171 PLAIGFSVALGHLLAIDYTGCGINPARSFGSSVITHNFQDHWIFWVGPFIGAALAVLIYD 230
Query: 210 Y 210
+
Sbjct: 231 F 231
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|C Chain C, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|D Chain D, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
Length = 303
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 87/230 (37%), Gaps = 36/230 (15%)
Query: 25 CLAEILGTFGLMFFGCMSCIGGFSQ----GSVPSLQPALMFGFVVSTIITIFGHISSAHL 80
+AE + T ++ + IG + GSV L A FG ++ ++ IS H+
Sbjct: 41 AIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGHI 100
Query: 81 NPSVTVAAFMLGDISVADALVYVMAQLIGAVLGYA--------------------TLGHH 120
NP+VT F+ +S+ ALVY++AQ +GA+ G LG++
Sbjct: 101 NPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALGYN 160
Query: 121 GIPMLWQSEVLKFIFPWLNLXXXXXXXXXXXXSIA---------TYYQLYQVNGPYTGAS 171
L + F+ + + + ++ P TG
Sbjct: 161 KGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTG 220
Query: 172 MNAARSIAPAFI---NNIWTKQWIYWTAPTLAGTVTPLIYTYAFERKRLE 218
+N ARS A I N +W QWI+W P + V + Y ++
Sbjct: 221 INPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYVLRAAAIK 270
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
pdb|3CN6|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
Length = 304
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 87/230 (37%), Gaps = 36/230 (15%)
Query: 25 CLAEILGTFGLMFFGCMSCIGGFSQ----GSVPSLQPALMFGFVVSTIITIFGHISSAHL 80
+AE + T ++ + IG + GSV L A FG ++ ++ IS H+
Sbjct: 64 AIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGHI 123
Query: 81 NPSVTVAAFMLGDISVADALVYVMAQLIGAVLGYA--------------------TLGHH 120
NP+VT F+ +S+ ALVY++AQ +GA+ G LG++
Sbjct: 124 NPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALGYN 183
Query: 121 GIPMLWQSEVLKFIFPWLNLXXXXXXXXXXXXSIA---------TYYQLYQVNGPYTGAS 171
L + F+ + + + ++ P TG
Sbjct: 184 KGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTG 243
Query: 172 MNAARSIAPAFI---NNIWTKQWIYWTAPTLAGTVTPLIYTYAFERKRLE 218
+N ARS A I N +W QWI+W P + V + Y ++
Sbjct: 244 INPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYVLRAAAIK 293
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
pdb|1Z98|M Chain M, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
Length = 281
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 87/230 (37%), Gaps = 36/230 (15%)
Query: 25 CLAEILGTFGLMFFGCMSCIGGFSQ----GSVPSLQPALMFGFVVSTIITIFGHISSAHL 80
+AE + T ++ + IG + GSV L A FG ++ ++ IS H+
Sbjct: 41 AIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGHI 100
Query: 81 NPSVTVAAFMLGDISVADALVYVMAQLIGAVLGYA--------------------TLGHH 120
NP+VT F+ +S+ ALVY++AQ +GA+ G LG++
Sbjct: 101 NPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALGYN 160
Query: 121 GIPMLWQSEVLKFIFPWLNLXXXXXXXXXXXXSIA---------TYYQLYQVNGPYTGAS 171
L + F+ + + + ++ P TG
Sbjct: 161 KGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTG 220
Query: 172 MNAARSIAPAFI---NNIWTKQWIYWTAPTLAGTVTPLIYTYAFERKRLE 218
+N ARS A I N +W QWI+W P + V + Y ++
Sbjct: 221 INPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYVLRAAAIK 270
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e,
S274e Mutant
Length = 304
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 86/230 (37%), Gaps = 36/230 (15%)
Query: 25 CLAEILGTFGLMFFGCMSCIGGFSQ----GSVPSLQPALMFGFVVSTIITIFGHISSAHL 80
+AE + T ++ + IG + GSV L A FG ++ ++ IS H+
Sbjct: 64 AIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGHI 123
Query: 81 NPSVTVAAFMLGDISVADALVYVMAQLIGAVLGYA--------------------TLGHH 120
NP+VT F+ + + ALVY++AQ +GA+ G LG++
Sbjct: 124 NPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALGYN 183
Query: 121 GIPMLWQSEVLKFIFPWLNLXXXXXXXXXXXXSIA---------TYYQLYQVNGPYTGAS 171
L + F+ + + + ++ P TG
Sbjct: 184 KGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTG 243
Query: 172 MNAARSIAPAFI---NNIWTKQWIYWTAPTLAGTVTPLIYTYAFERKRLE 218
+N ARS A I N +W QWI+W P + V + Y ++
Sbjct: 244 INPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYVLRAAAIK 293
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e
Mutant
Length = 300
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 86/230 (37%), Gaps = 36/230 (15%)
Query: 25 CLAEILGTFGLMFFGCMSCIGGFSQ----GSVPSLQPALMFGFVVSTIITIFGHISSAHL 80
+AE + T ++ + IG + GSV L A FG ++ ++ IS H+
Sbjct: 60 AIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGHI 119
Query: 81 NPSVTVAAFMLGDISVADALVYVMAQLIGAVLGYA--------------------TLGHH 120
NP+VT F+ + + ALVY++AQ +GA+ G LG++
Sbjct: 120 NPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALGYN 179
Query: 121 GIPMLWQSEVLKFIFPWLNLXXXXXXXXXXXXSIA---------TYYQLYQVNGPYTGAS 171
L + F+ + + + ++ P TG
Sbjct: 180 KGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTG 239
Query: 172 MNAARSIAPAFI---NNIWTKQWIYWTAPTLAGTVTPLIYTYAFERKRLE 218
+N ARS A I N +W QWI+W P + V + Y ++
Sbjct: 240 INPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYVLRAAAIK 289
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|1RC2|A Chain A, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|2ABM|A Chain A, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|B Chain B, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|C Chain C, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|D Chain D, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|E Chain E, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|F Chain F, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|G Chain G, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|H Chain H, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
Length = 231
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Query: 27 AEILGTFGLMFFGCMSCI--GGFSQGSVPSLQPALMFGFVVSTIITIFGHISSAHLNPSV 84
AE GTF L+F GC S + GF + + AL FG V T+ GHIS H NP+V
Sbjct: 7 AECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAV 66
Query: 85 TVAAFMLGDISVADALVYVMAQLIGAVLGYATL 117
T+ + G + + YV+AQ++G ++ A L
Sbjct: 67 TIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALL 99
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f
pdb|3NKA|B Chain B, Crystal Structure Of Aqpz H174g,T183f
Length = 234
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Query: 27 AEILGTFGLMFFGCMSCI--GGFSQGSVPSLQPALMFGFVVSTIITIFGHISSAHLNPSV 84
AE GTF L+F GC S + GF + + AL FG V T+ GHIS H NP+V
Sbjct: 10 AECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAV 69
Query: 85 TVAAFMLGDISVADALVYVMAQLIGAVLGYATL 117
T+ + G + + YV+AQ++G ++ A L
Sbjct: 70 TIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALL 102
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f
pdb|3NKC|B Chain B, Crystal Structure Of Aqpz F43w,H174g,T183f
Length = 234
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Query: 27 AEILGTFGLMFFGCMSCI--GGFSQGSVPSLQPALMFGFVVSTIITIFGHISSAHLNPSV 84
AE GTF L+F GC S + GF + + AL +G V T+ GHIS H NP+V
Sbjct: 10 AECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAWGLTVLTMAFAVGHISGGHFNPAV 69
Query: 85 TVAAFMLGDISVADALVYVMAQLIGAVLGYATL 117
T+ + G + + YV+AQ++G ++ A L
Sbjct: 70 TIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALL 102
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w
pdb|3NK5|B Chain B, Crystal Structure Of Aqpz Mutant F43w
Length = 234
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
Query: 27 AEILGTFGLMFFGCMSCI--GGFSQGSVPSLQPALMFGFVVSTIITIFGHISSAHLNPSV 84
AE GTF L+F GC S + GF + AL +G V T+ GHIS H NP+V
Sbjct: 10 AECFGTFWLVFGGCGSAVLAAGFPALGIGFAGVALAWGLTVLTMAFAVGHISGGHFNPAV 69
Query: 85 TVAAFMLGDISVADALVYVMAQLIGAVLGYATL 117
T+ + G + + YV+AQ++G ++ A L
Sbjct: 70 TIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALL 102
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9F|B Chain B, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9G|A Chain A, Crystal Structure Of Aqpz Mutant L170c Complexed With
Mercury
Length = 234
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
Query: 27 AEILGTFGLMFFGCMSCI--GGFSQGSVPSLQPALMFGFVVSTIITIFGHISSAHLNPSV 84
AE GTF L+F G S + GF + + AL FG V T+ GHIS H NP+V
Sbjct: 10 AESFGTFWLVFGGSGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAV 69
Query: 85 TVAAFMLGDISVADALVYVMAQLIGAVLGYATL 117
T+ + G + + YV+AQ++G ++ A L
Sbjct: 70 TIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALL 102
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c.
pdb|2O9D|B Chain B, Crystal Structure Of Aqpz Mutant T183c
Length = 234
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
Query: 27 AEILGTFGLMFFGCMSCI--GGFSQGSVPSLQPALMFGFVVSTIITIFGHISSAHLNPSV 84
AE GTF L+F G S + GF + + AL FG V T+ GHIS H NP+V
Sbjct: 10 AESFGTFWLVFGGSGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAV 69
Query: 85 TVAAFMLGDISVADALVYVMAQLIGAVLGYATL 117
T+ + G + + YV+AQ++G ++ A L
Sbjct: 70 TIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALL 102
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With
Mercury
Length = 234
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
Query: 27 AEILGTFGLMFFGCMSCI--GGFSQGSVPSLQPALMFGFVVSTIITIFGHISSAHLNPSV 84
AE GTF L+F G S + GF + + AL FG V T+ GHIS H NP+V
Sbjct: 10 AESFGTFWLVFGGSGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAV 69
Query: 85 TVAAFMLGDISVADALVYVMAQLIGAVLGYATL 117
T+ + G + + YV+AQ++G ++ A L
Sbjct: 70 TIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALL 102
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution
pdb|2F2B|A Chain A, Crystal Structure Of Integral Membrane Protein Aquaporin
Aqpm At 1.68a Resolution
Length = 246
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 97/236 (41%), Gaps = 51/236 (21%)
Query: 25 CLAEILGTFGLMFFGCMSCIGGF---SQGSVPS---------------LQPALMFGFVVS 66
C+AE +GTF L+FFG S S G+ P+ + L FGF ++
Sbjct: 8 CIAEFIGTFILVFFGAGSAAVTLMIASGGTSPNPFNIGIGLLGGLGDWVAIGLAFGFAIA 67
Query: 67 TIITIFGHISSAHLNPSVTVAAFMLGDISVADALVYVMAQLIGAV-----------LGYA 115
I G+IS H+NP+VT+ + + + + Y++AQL+GA +G A
Sbjct: 68 ASIYALGNISGCHINPAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGSFIFLQCAGIGAA 127
Query: 116 TLGHHG----IPML--WQSEVLKFIFPWLNLXXXXXXXXXXXXSIA--------TYYQLY 161
T+G G P + WQ+ + + + +L + T +
Sbjct: 128 TVGGLGATAPFPGISYWQAMLAEVVGTFLLMITIMGIAVDERAPKGFAGIIIGLTVAGII 187
Query: 162 QVNGPYTGASMNAARSIAPAFIN-------NIWTKQWIYWTAPTLAGTVTPLIYTY 210
G +G+S+N AR+ P ++N ++W IY P + + L Y Y
Sbjct: 188 TTLGNISGSSLNPARTFGP-YLNDMIFAGTDLWNYYSIYVIGPIVGAVLAALTYQY 242
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Mutation W48f, F200t
Length = 281
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 25 CLAEILGTFGLMFFGCMSCIGGF--SQGSVPSLQPALMFGFVVSTIITIFGHISSAHLNP 82
C+AE LGT L+FFG + C+ + S + +++FG V+ I + +S AHLNP
Sbjct: 11 CIAEFLGTGLLIFFG-VGCVAALKVAGASFGQWEISVIFGLGVAMAIYLTAGVSGAHLNP 69
Query: 83 SVTVAAFMLGDISVADALVYVMAQLIGA 110
+VT+A ++ + ++++Q+ GA
Sbjct: 70 AVTIALWLFACFDKRKVIPFIVSQVAGA 97
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|B Chain B, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|C Chain C, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|D Chain D, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|E Chain E, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|F Chain F, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|G Chain G, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|H Chain H, Archaeoglobus Fulgidus Aquaporin
Length = 246
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 18/105 (17%)
Query: 27 AEILGTFGLMFFGCMSCIGGF---SQGSVPS---------------LQPALMFGFVVSTI 68
AE++GTF L+FFG + + + P+ + F ++ +
Sbjct: 11 AEVVGTFILVFFGPGAAVITLMIANGADKPNEFNIGIGALGGLGDWFAIGMAFALAIAAV 70
Query: 69 ITIFGHISSAHLNPSVTVAAFMLGDISVADALVYVMAQLIGAVLG 113
I G IS AH+NP+VT+A + +G + + Y++AQ IGA LG
Sbjct: 71 IYSLGRISGAHINPAVTIALWSIGRFPGREVVPYIVAQFIGAALG 115
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 72/182 (39%), Gaps = 30/182 (16%)
Query: 59 LMFGFVVSTIITIFGHISSAHLNPSVTVAAFMLGDISVADALVYVMAQLIGAVLGY---- 114
+ F ++ +I G IS AH+NP+VT+A + +G + + Y++AQ IGA LG
Sbjct: 61 MAFALAIAAVIYSLGRISGAHINPAVTIALWSIGRFPGREVVPYIVAQFIGAALGSLLFL 120
Query: 115 -------ATLGHHGIPMLW------QSEVLKFIFPWLNLXXXXXXXXXXXXSIA------ 155
AT+G G + Q+ + + I +L +
Sbjct: 121 ACVGPAAATVGGLGATAPFPGIGYGQAILTEAIGTFLLMLVIMGVAVDERAPPGFAGLVI 180
Query: 156 --TYYQLYQVNGPYTGASMNAARSIAPAFIN-----NIWTKQWIYWTAPTLAGTVTPLIY 208
T + G TG+S+N AR+ P + N+W IY P + +Y
Sbjct: 181 GLTVGGIITTIGNITGSSLNPARTFGPYLGDSLMGINLWQYFPIYVIGPIVGAVAAAWLY 240
Query: 209 TY 210
Y
Sbjct: 241 NY 242
Score = 34.3 bits (77), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 23 EICLAEILGTFGLMFFGCMSCIGGFSQGSVPSLQPALMFGFVVSTIITIFGHISSAHLNP 82
+ L E +GTF LM + +G P L+ G V IIT G+I+ + LNP
Sbjct: 146 QAILTEAIGTFLLM----LVIMGVAVDERAPPGFAGLVIGLTVGGIITTIGNITGSSLNP 201
Query: 83 SVTVAAFMLGDISVADAL-----VYVMAQLIGAV 111
+ T + LGD + L +YV+ ++GAV
Sbjct: 202 ARTFGPY-LGDSLMGINLWQYFPIYVIGPIVGAV 234
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) With Substrate Glycerol
pdb|1LDA|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(glpf) Without Substrate Glycerol
pdb|1LDI|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Without Substrate Glycerol
Length = 281
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 25 CLAEILGTFGLMFFGCMSCIGGF--SQGSVPSLQPALMFGFVVSTIITIFGHISSAHLNP 82
C+AE LGT L+FFG + C+ + S + ++++G V+ I + +S AHLNP
Sbjct: 11 CIAEFLGTGLLIFFG-VGCVAALKVAGASFGQWEISVIWGLGVAMAIYLTAGVSGAHLNP 69
Query: 83 SVTVAAFMLGDISVADALVYVMAQLIGA 110
+VT+A ++ + ++++Q+ GA
Sbjct: 70 AVTIALWLFACFDKRKVIPFIVSQVAGA 97
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
pdb|3LLQ|B Chain B, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
Length = 256
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 26 LAEILGTFGLMFFGCMSCI--GGFSQGSVPSLQPALMFGFVVSTIITIFGHISSAHLNPS 83
LAE GTF L+F GC S + F + + AL FG V T+ G IS H NP+
Sbjct: 34 LAEFFGTFWLVFGGCGSAVFAAAFPELGIGFTGVALAFGLTVLTMAYAVGGISGGHFNPA 93
Query: 84 VTVAAFMLGDISVADALVYVM 104
V+V + G + + YV+
Sbjct: 94 VSVGLTVAGRFPASSLVPYVI 114
>pdb|3C02|A Chain A, X-Ray Structure Of The Aquaglyceroporin From Plasmodium
Falciparum
Length = 258
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 26 LAEILGTFGLMFFGCMSCIGGFSQG-SVPSLQPALMFGFVVSTIITIFGHISSAHLNPSV 84
+ E LGTF LMF G + + G S + L +G V I + +S AHLN +V
Sbjct: 14 IGEFLGTFVLMFLGEGATANFHTTGLSGDWYKLCLGWGLAVFFGILVSAKLSGAHLNLAV 73
Query: 85 TVAAFMLGDISVADALVYVMAQLIGAVLGYATL 117
++ + + VY AQL+GA +G +T+
Sbjct: 74 SIGLSSINKFDLKKIPVYFFAQLLGAFVGTSTV 106
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 8.0
pdb|2W2E|A Chain A, 1.15 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 3.5
Length = 279
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 167 YTGASMNAARSIAPAFINNIWTK-QWIYWTAPTL 199
YTGA +N ARS PA + WIYW P L
Sbjct: 218 YTGAGLNPARSFGPAVAARSFPNYHWIYWLGPIL 251
>pdb|2PMV|A Chain A, Crystal Structure Of Human Intrinsic Factor- Cobalamin
Complex At 2.6 A Resolution
pdb|2PMV|B Chain B, Crystal Structure Of Human Intrinsic Factor- Cobalamin
Complex At 2.6 A Resolution
pdb|2PMV|C Chain C, Crystal Structure Of Human Intrinsic Factor- Cobalamin
Complex At 2.6 A Resolution
pdb|2PMV|D Chain D, Crystal Structure Of Human Intrinsic Factor- Cobalamin
Complex At 2.6 A Resolution
Length = 399
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 48 SQGSVPSLQPALMFGFVVSTIITIFGHISSAHLNPSVTVAAFMLG--DISVADALVYVMA 105
S SVPS Q L+ G V ++ SSA+ NPS+ +A + G ++ L Y
Sbjct: 6 SSCSVPSAQEPLVNGIQVLMENSV---TSSAYPNPSILIAMNLAGAYNLKAQKLLTY--- 59
Query: 106 QLIGAVLGYATLGHHGIPML 125
QL+ + T+GH G+ ++
Sbjct: 60 QLMSSDNNDLTIGHLGLTIM 79
>pdb|3KQ4|A Chain A, Structure Of Intrinsic Factor-Cobalamin Bound To Its
Receptor Cubilin
pdb|3KQ4|C Chain C, Structure Of Intrinsic Factor-Cobalamin Bound To Its
Receptor Cubilin
pdb|3KQ4|E Chain E, Structure Of Intrinsic Factor-Cobalamin Bound To Its
Receptor Cubilin
Length = 393
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query: 51 SVPSLQPALMFGFVVSTIITIFGHISSAHLNPSVTVAAFMLG--DISVADALVYVMAQLI 108
SVPS Q L+ G V ++ SSA+ NPS+ +A + G ++ L Y QL+
Sbjct: 3 SVPSAQEPLVNGIQVLMENSV---TSSAYPNPSILIAMNLAGAYNLKAQKLLTY---QLM 56
Query: 109 GAVLGYATLGHHGIPML 125
+ T+GH G+ ++
Sbjct: 57 SSDNNDLTIGHLGLTIM 73
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.139 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,332,568
Number of Sequences: 62578
Number of extensions: 225160
Number of successful extensions: 451
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 360
Number of HSP's gapped (non-prelim): 64
length of query: 221
length of database: 14,973,337
effective HSP length: 95
effective length of query: 126
effective length of database: 9,028,427
effective search space: 1137581802
effective search space used: 1137581802
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 49 (23.5 bits)