RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10345
(221 letters)
>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily. Members of
the MIP superfamily function as membrane channels that
selectively transport water, small neutral molecules,
and ions out of and between cells. The channel proteins
share a common fold: the N-terminal cytosolic portion
followed by six transmembrane helices, which might have
arisen through gene duplication. On the basis of
sequence similarity and functional characteristics, the
superfamily can be subdivided into two major groups:
water-selective channels called aquaporins (AQPs) and
glycerol uptake facilitators (GlpFs). AQPs are found in
all three kingdoms of life, while GlpFs have been
characterized only within microorganisms.
Length = 228
Score = 106 bits (268), Expect = 1e-28
Identities = 69/225 (30%), Positives = 93/225 (41%), Gaps = 39/225 (17%)
Query: 25 CLAEILGTFGLMFFGCMSCIG--GFSQGSVPSLQPALMFGFVVSTIITIFGHISSAHLNP 82
LAE LGTF L+FFGC S + S L AL +GF + ++ GHIS H+NP
Sbjct: 3 YLAEFLGTFLLVFFGCGSVLAVKLAGGASGGLLGIALAWGFAIFVLVYAVGHISGGHINP 62
Query: 83 SVTVAAFMLGDISVADALVYVMAQLIGAVLGYA------------TLGHHGIPMLWQSEV 130
+VT+A + G + + Y++AQL+GA+LG A LG + I
Sbjct: 63 AVTLALAVGGRFPLIRVIPYIIAQLLGAILGAALLYGLYYGLYLEFLGANNIVAGIFGTY 122
Query: 131 LKFIFPWLNLVEVEVTG----------------GGGVGSIA------TYYQLYQVNGPYT 168
N VE G G G +A + GP T
Sbjct: 123 PSPGVSNGNAFFVEFIGTFILVLVVFATTDDPNGPPPGGLAPLAIGLLVAAIGLAGGPIT 182
Query: 169 GASMNAARSIAPAFINNIWTKQ---WIYWTAPTLAGTVTPLIYTY 210
GASMN ARS+ PA + W+YW P + L+Y Y
Sbjct: 183 GASMNPARSLGPALFTGLARHWHYFWVYWVGPLIGAIAGALVYDY 227
>gnl|CDD|215807 pfam00230, MIP, Major intrinsic protein. MIP (Major Intrinsic
Protein) family proteins exhibit essentially two
distinct types of channel properties: (1) specific water
transport by the aquaporins, and (2) small neutral
solutes transport, such as glycerol by the glycerol
facilitators.
Length = 218
Score = 105 bits (265), Expect = 3e-28
Identities = 69/209 (33%), Positives = 98/209 (46%), Gaps = 26/209 (12%)
Query: 25 CLAEILGTFGLMFFGCMSCIGGFSQGSVPSLQPALMFGFVVSTIITIFGHISSAHLNPSV 84
+AE L T +FFG S +G + L AL FG + T++ GHIS AHLNP+V
Sbjct: 11 VIAEFLATLLFVFFGVGSALG-VKKLYGGLLAVALAFGLALFTLVYCTGHISGAHLNPAV 69
Query: 85 TVAAFMLGDISVADALVYVMAQLIGAVLGYATL-----------GHHGIPML----WQSE 129
T A + IS+ A+ Y++AQL+GA+ G A L G Q+
Sbjct: 70 TFALLVGRRISLLRAIYYIIAQLLGAICGAALLKGVTNGLQRAGGFANSLAPGVNAGQAF 129
Query: 130 VLKFIFPWLNLVEVEVTG----GGGVGSIA------TYYQLYQVNGPYTGASMNAARSIA 179
V++ I + + V T G +G +A + + GPYTGASMN ARS
Sbjct: 130 VVEIILTFQLVYTVFATTDDPRNGSLGHVAPLAIGFAVFLNHLAGGPYTGASMNPARSFG 189
Query: 180 PAFINNIWTKQWIYWTAPTLAGTVTPLIY 208
PA + W W+YW P + + L+Y
Sbjct: 190 PAVVLWKWDDHWVYWVGPLIGAALAALVY 218
>gnl|CDD|233156 TIGR00861, MIP, MIP family channel proteins. 1.A.8 The Major
Intrinsic Protein (MIP) FamilyThe MIP family is large
and diverse, possessing over 100 members that all form
transmembrane channels. These channel proteins function
in water, smallcarbohydrate (e.g., glycerol), urea, NH3,
CO2 and possibly ion transport by an energy independent
mechanism. They are found ubiquitously in bacteria,
archaeaand eukaryotes. The MIP family contains two major
groups of channels: aquaporins and glycerol
facilitators.The known aquaporins cluster loosely
together as do the known glycerol facilitators. MIP
family proteins are believed to form aqueous pores that
selectively allow passive transport of their solute(s)
across the membrane with minimal apparent recognition.
Aquaporins selectively transport water (but not
glycerol) while glycerol facilitators selectively
transport glycerol but not water. Some aquaporins can
transport NH3 and CO2. Glycerol facilitators function as
solute nonspecific channels, and may transport glycerol,
dihydroxyacetone, propanediol, urea and other small
neutral molecules in physiologically importantprocesses.
Some members of the family, including the yeast FPS
protein (TC #1.A.8.5.1) and tobacco NtTIPA may transport
both water and small solutes [Transport and binding
proteins, Unknown substrate].
Length = 216
Score = 93.5 bits (233), Expect = 1e-23
Identities = 64/216 (29%), Positives = 87/216 (40%), Gaps = 34/216 (15%)
Query: 27 AEILGTFGLMFFGCMSCIGGFSQGSVPSLQP------ALMFGFVVSTIITIFGHISSAHL 80
AE LGTF L+FFG S +G G+ ++ AL FG V+T++ G IS AHL
Sbjct: 1 AEFLGTFLLVFFGVGSALGVNVAGAYGAVGGGQFLGVALAFGLAVATLVYCVGGISGAHL 60
Query: 81 NPSVTVAAFMLGDISVADALVYVMAQLIGAVLG----YATLGHHGIPMLWQSEVLKFIFP 136
NP+VT+A + + VY++AQLIGA+LG Y L +
Sbjct: 61 NPAVTIALLLGRRFPLKRVPVYIVAQLIGAILGAALLYGLTSGLFPGNLAVNGSASAGVS 120
Query: 137 WLNLVEVEVTGG----GGVGSIATYYQLYQVN------------------GPYTGASMNA 174
VE G + + GPYTG MN
Sbjct: 121 SGQAFFVEFIGTAILVLVIFATTDDRNRVPRGGFAPLAIGLLVFLIHLSMGPYTGTGMNP 180
Query: 175 ARSIAPAFINN--IWTKQWIYWTAPTLAGTVTPLIY 208
ARS+ PA W W+YW P + + L+Y
Sbjct: 181 ARSLGPALFAGLAGWGNHWVYWVGPIIGAILGALVY 216
Score = 32.3 bits (74), Expect = 0.11
Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 9/92 (9%)
Query: 26 LAEILGTFGLMFFGCMSCI---GGFSQGSVPSLQPALMFGFVVSTIITIFGHISSAHLNP 82
E +GT L+ + G P L G +V I G + +NP
Sbjct: 126 FVEFIGTAILVLVIFATTDDRNRVPRGGFAP-----LAIGLLVFLIHLSMGPYTGTGMNP 180
Query: 83 SVTVA-AFMLGDISVADALVYVMAQLIGAVLG 113
+ ++ A G + VY + +IGA+LG
Sbjct: 181 ARSLGPALFAGLAGWGNHWVYWVGPIIGAILG 212
>gnl|CDD|177778 PLN00184, PLN00184, aquaporin NIP1; Provisional.
Length = 296
Score = 86.2 bits (213), Expect = 3e-20
Identities = 65/215 (30%), Positives = 102/215 (47%), Gaps = 28/215 (13%)
Query: 22 LEICLAEILGTFGLMFFGCMSCIGGFSQGSVPSLQP-ALMFGFVVSTIITIFGHISSAHL 80
L+ +AE+LGT+ L+F GC S + +V +L A+++G + +I GHIS AH+
Sbjct: 54 LQKLIAEVLGTYFLVFTGCASVVVNMQNDNVVTLPGIAIVWGLTIMVLIYSLGHISGAHI 113
Query: 81 NPSVTVAAFMLGDISVADALVYVMAQLIGAVLGYATL------------GHHGIPM---- 124
NP+VT+A G + YV++Q+IG+ L ATL G H + +
Sbjct: 114 NPAVTIAFASCGRFPLKQVPAYVISQVIGSTLAAATLRLLFGLDHDVCSGKHDVFIGSSP 173
Query: 125 ---LWQSEVLKFI--FPWLNLVEVEVTGGGGVGSIA------TYYQLYQVNGPYTGASMN 173
Q+ V++FI F + ++ T +G +A T + P + ASMN
Sbjct: 174 VGSDLQAFVMEFIVTFYLMFIISGVATDNRAIGELAGLAIGSTVLLNVLIAAPVSSASMN 233
Query: 174 AARSIAPAFINNIWTKQWIYWTAPTLAGTVTPLIY 208
RS+ PA + + WIY APTL +Y
Sbjct: 234 PGRSLGPAMVYGCYKGIWIYIVAPTLGAIAGAWVY 268
>gnl|CDD|223653 COG0580, GlpF, Glycerol uptake facilitator and related permeases
(Major Intrinsic Protein Family) [Carbohydrate transport
and metabolism].
Length = 241
Score = 79.2 bits (196), Expect = 5e-18
Identities = 60/228 (26%), Positives = 84/228 (36%), Gaps = 44/228 (19%)
Query: 25 CLAEILGTFGLMFFGCMSCIGGFSQGSVPS----LQPALMFGFVVSTIITIFGHISSAHL 80
LAE LGTF L+FFG S +GS L AL +G V I FG IS AHL
Sbjct: 8 LLAEFLGTFLLIFFGNGSVAAVALKGSKALGGGWLGIALAWGLGVLVAIYAFGGISGAHL 67
Query: 81 NPSVTVAAFMLGDISVADALVYVMAQLIGAVLGYATL-----------GHHGIPMLWQSE 129
NP+VT+A + G L Y++AQ++GA G A L + L
Sbjct: 68 NPAVTIALAVRGRFPWRKVLPYIVAQVLGAFAGAALLYLLYYGKILETEGDPLASLGAFS 127
Query: 130 VLKFIFPWLNLVEVEVTGG-----------------GGVGSIA---TYYQLYQVNGPYTG 169
+ +E G G +A + GP TG
Sbjct: 128 TSPGGYSLGQAFLIEFVGTFVLVLGILALTDDGNANAGFAPLAIGLLVTAIGLSLGPTTG 187
Query: 170 ASMNAARSIAPAFINNIWTKQ---------WIYWTAPTLAGTVTPLIY 208
++N AR + P +++ WI P + + L+Y
Sbjct: 188 TAINPARDLGPRLAHSLAGWAANKGDSSYFWIPVIGPIVGAILGALLY 235
>gnl|CDD|177663 PLN00026, PLN00026, aquaporin NIP; Provisional.
Length = 298
Score = 78.4 bits (193), Expect = 3e-17
Identities = 64/203 (31%), Positives = 83/203 (40%), Gaps = 20/203 (9%)
Query: 27 AEILGTFGLMFFGCMSCI-GGFSQGSVPSLQPALMFGFVVSTIITIFGHISSAHLNPSVT 85
AE +GTF L+F I G+ + A G V +I GHIS AHLNPS+T
Sbjct: 76 AEFVGTFILIFAATAGPIVNQKYDGAETLIGNAACAGLAVMIVILSTGHISGAHLNPSLT 135
Query: 86 VAAFMLGDISVADALVYVMAQLIGAVLGYATL---------GHHGIPM--LWQSEVLKFI 134
+A L Y+ AQ+ ++ L G +P Q+ L+FI
Sbjct: 136 IAFAALRHFPWKHVPAYIAAQVSASICASFALKGVFHPFMSGGVTVPSVSTGQAFALEFI 195
Query: 135 --FPWLNLVEVEVTGGGGVGSIA------TYYQLYQVNGPYTGASMNAARSIAPAFINNI 186
F L +V T VG +A T V GP TG SMN R++ PA
Sbjct: 196 ITFNLLFVVTAVATDTRAVGELAGIAVGATVMLNILVAGPSTGGSMNPVRTLGPAVAAGN 255
Query: 187 WTKQWIYWTAPTLAGTVTPLIYT 209
+ WIY APTL YT
Sbjct: 256 YRAIWIYLVAPTLGALAGAGTYT 278
>gnl|CDD|215092 PLN00183, PLN00183, putative aquaporin NIP7; Provisional.
Length = 274
Score = 77.6 bits (191), Expect = 3e-17
Identities = 64/210 (30%), Positives = 95/210 (45%), Gaps = 26/210 (12%)
Query: 22 LEICLAEILGTFGLMF--FGCMSCIGGFSQGSVPSLQPALMFGFVVSTIITIFGHISSAH 79
+ LAE++GTF LMF G ++ S G V L+ A G V ++ G IS AH
Sbjct: 45 ARMVLAEMVGTFILMFCVCGIIASTQ-LSGGEVGLLEYAATAGLTVVVVVFSIGSISGAH 103
Query: 80 LNPSVTVAAFMLGDISVADALVYVMAQLIGAVLG-YATLGHHGI--------PML----- 125
+NPSVT+A G + +Y+ AQ +G+VL Y + +G+ P
Sbjct: 104 VNPSVTIAFATFGHFPWSKVPLYITAQTVGSVLATYVGVSVYGVKADLMTTKPAQGCSSA 163
Query: 126 -WQSEVLKFIFPWLNLV------EVEVTGGGGVGSIATYYQLYQVNGPYTGASMNAARSI 178
W + FI +L + G +G L + GP +G SMN ARS+
Sbjct: 164 FWVEFIATFIVMFLAASLTSQPQSLGHLSGFVIGIAIGLAVL--ITGPVSGGSMNPARSL 221
Query: 179 APAFINNIWTKQWIYWTAPTLAGTVTPLIY 208
PA ++ + WIY TAPT+ L++
Sbjct: 222 GPAIVSWDFKDIWIYITAPTIGAVAGALMF 251
>gnl|CDD|235453 PRK05420, PRK05420, aquaporin Z; Provisional.
Length = 231
Score = 76.5 bits (189), Expect = 5e-17
Identities = 61/227 (26%), Positives = 90/227 (39%), Gaps = 35/227 (15%)
Query: 25 CLAEILGTFGLMFFGCMSCI--GGFSQGSVPSLQPALMFGFVVSTIITIFGHISSAHLNP 82
AE GTF L+F GC S + F + + L AL FG V T+ GHIS H NP
Sbjct: 5 LAAEFFGTFWLVFGGCGSAVLAAAFPELGIGFLGVALAFGLTVLTMAYAVGHISGGHFNP 64
Query: 83 SVTVAAFMLGDISVADALVYVMAQLIGAVLGYATL------------------------- 117
+V+V + G + + Y++AQ++G + A L
Sbjct: 65 AVSVGLWAGGRFPAKELVPYIIAQVVGGIAAAAVLYLIASGKAGFDLAGSGFASNGYGEH 124
Query: 118 --GHHGIPMLWQSE-VLKFIFPWLNLVEVEVTGGGGVGSIATYYQL---YQVNGPYTGAS 171
G + + E VL F + L + G IA L + ++ P T S
Sbjct: 125 SPGGYSLLAALVCEVVLTAFFLLVILGATDKRAPAGFAPIAIGLALTLIHLISIPVTNTS 184
Query: 172 MNAARSIAPAFINNIW--TKQWIYWTAPTLAGTVTPLIYTYAFERKR 216
+N ARS A W + W++W AP + + LIY E+
Sbjct: 185 VNPARSTGVALFVGGWALEQLWLFWVAPIVGAIIGGLIYRLLLEKDD 231
>gnl|CDD|177664 PLN00027, PLN00027, aquaporin TIP; Provisional.
Length = 252
Score = 71.4 bits (175), Expect = 5e-15
Identities = 61/221 (27%), Positives = 103/221 (46%), Gaps = 30/221 (13%)
Query: 21 ALEICLAEILGTFGLMFFGCMSCIGGFSQ-----GSVPS--LQPALMFGFVVSTIITIFG 73
AL+ LAE + T +F G S + F++ + P+ + AL F + +++
Sbjct: 19 ALKAALAEFISTLIFVFAGEGSGMA-FNKLTDNGSTTPAGLVAAALAHAFALFVAVSVGA 77
Query: 74 HISSAHLNPSVTVAAFMLGDISVADALVYVMAQLIGAVL---------GYATLGHHGIPM 124
+IS H+NP+VT AF+ G+I++ ++Y +AQL+G+V+ G +
Sbjct: 78 NISGGHVNPAVTFGAFIGGNITLLRGILYWIAQLLGSVVACLLLKFSTGGLETSAFSLSS 137
Query: 125 ---LWQSEVLKFIFPWLNLVEVEVTG----GGGVGSIATYYQLYQV------NGPYTGAS 171
+W + V + + + + V T G +G IA + V G + GAS
Sbjct: 138 GVGVWNAFVFEIVMTFGLVYTVYATAVDPKKGDLGIIAPIAIGFIVGANILAGGAFDGAS 197
Query: 172 MNAARSIAPAFINNIWTKQWIYWTAPTLAGTVTPLIYTYAF 212
MN A S PA ++ WT W+YW P + G + L+Y F
Sbjct: 198 MNPAVSFGPAVVSWTWTNHWVYWAGPLIGGGIAGLVYELIF 238
>gnl|CDD|165748 PLN00182, PLN00182, putative aquaporin NIP4; Provisional.
Length = 283
Score = 71.1 bits (174), Expect = 8e-15
Identities = 56/195 (28%), Positives = 87/195 (44%), Gaps = 21/195 (10%)
Query: 26 LAEILGTFGLMFFGCMS-CIGGFSQGSVPSLQPALMFGFVVSTIITIFGHISSAHLNPSV 84
+AE++GT+ ++F GC + G++ + +G +V +I GHIS AH NP+V
Sbjct: 46 IAEMIGTYFIIFSGCGVVVVNVLYGGTITFPGICVTWGLIVMVMIYSTGHISGAHFNPAV 105
Query: 85 TVAAFMLGDISVADALVYVMAQLIGAVLGYATL------------GHHGIPMLWQSEVLK 132
TV + +Y+ AQL G++L TL G Q+ V +
Sbjct: 106 TVTFAIFRRFPWYQVPLYIGAQLTGSLLASLTLRLMFNVTPEAFFGTTPTDSSGQALVAE 165
Query: 133 FIFPWLNLVEVE--VTGGGGVGSIA------TYYQLYQVNGPYTGASMNAARSIAPAFIN 184
I +L + + T VG +A T V GP +GASMN ARS+ PA +
Sbjct: 166 IIISFLLMFVISGVATDSRAVGELAGIAVGMTIILNVFVAGPISGASMNPARSLGPAIVM 225
Query: 185 NIWTKQWIYWTAPTL 199
+ W+Y P +
Sbjct: 226 GRYKGIWVYIVGPFV 240
>gnl|CDD|165733 PLN00166, PLN00166, aquaporin TIP2; Provisional.
Length = 250
Score = 70.0 bits (171), Expect = 1e-14
Identities = 62/220 (28%), Positives = 103/220 (46%), Gaps = 28/220 (12%)
Query: 21 ALEICLAEILGTFGLMFFGCMSCIGGFSQGSVPSLQP------ALMFGFVVSTIITIFGH 74
+L+ L+E + T +F G S I S +L P A+ F + ++I +
Sbjct: 17 SLKAYLSEFIATLLFVFAGVGSAIAFAKLTSDAALDPAGLVAVAVAHAFALFVGVSIAAN 76
Query: 75 ISSAHLNPSVTVAAFMLGDISVADALVYVMAQLIGAV-----LGYATLGH----HGIPM- 124
IS HLNP+VT+ + G+I++ Y +AQ +G++ L + T G HG+
Sbjct: 77 ISGGHLNPAVTLGLAIGGNITIITGFFYWIAQCLGSIVACLLLVFVTNGESVPTHGVAAG 136
Query: 125 --LWQSEVLKFIFPWLNLVEVEVTGG----GGVGSIATYYQLYQVN------GPYTGASM 172
+ V++ + + + V T G +G+IA + V GP++G SM
Sbjct: 137 LGAIEGVVMEIVVTFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSM 196
Query: 173 NAARSIAPAFINNIWTKQWIYWTAPTLAGTVTPLIYTYAF 212
N ARS PA ++ +++ WIYW P + G + LIY F
Sbjct: 197 NPARSFGPAVVSGDFSQIWIYWVGPLVGGALAGLIYGDVF 236
>gnl|CDD|215085 PLN00167, PLN00167, aquaporin TIP5; Provisional.
Length = 256
Score = 63.4 bits (154), Expect = 4e-12
Identities = 62/230 (26%), Positives = 92/230 (40%), Gaps = 57/230 (24%)
Query: 21 ALEICLAEILGTFGLMFFGCMSCIGGF----SQGSVPS--LQPALMFGFVVSTIITIFGH 74
AL LAE + TF +F S + S PS L A+ F +S+ + I +
Sbjct: 21 ALRSYLAEFISTFFFVFAAVGSAMSSRKLMPDAASDPSSLLIVAIANAFALSSAVYIAAN 80
Query: 75 ISSAHLNPSVTVAAFMLGDISVADALVYVMAQLIGAV-----LGYATLGHHGIPMLWQSE 129
IS H+NP+VT + G ISV A+ Y ++Q++ +V L T+G H +P
Sbjct: 81 ISGGHVNPAVTFGMAVGGHISVPTAMFYWISQMLASVMACLFLKVTTVGQH-VPT----- 134
Query: 130 VLKFIFPWLNLVEVEVTGGG-----GVGSIATYYQLYQVN-------------------- 164
+ E+TG G GV + Y +Y
Sbjct: 135 ---------YKIAEEMTGFGASVLEGVLTFGLVYTVYAAGDPRRGLLGAIGPLAIGLVAG 185
Query: 165 ------GPYTGASMNAARSIAPAFINNIWTKQWIYWTAPTLAGTVTPLIY 208
GP++G SMN A + A + + Q +YW P L G V L+Y
Sbjct: 186 ANVLAAGPFSGGSMNPACAFGSAVVAGSFKNQAVYWVGPLLGGAVAGLLY 235
>gnl|CDD|240230 PTZ00016, PTZ00016, aquaglyceroporin; Provisional.
Length = 294
Score = 54.7 bits (132), Expect = 4e-09
Identities = 38/120 (31%), Positives = 55/120 (45%), Gaps = 10/120 (8%)
Query: 25 CLAEILGTFGLMFFGCMSCIGGFSQGSVPS-LQPALMFGFVVSTIITIFGHISSAHLNPS 83
+AE LGTF L+FFG + G+ L + +G V+ + + IS HLNP+
Sbjct: 53 YVAEFLGTFVLLFFGEGVVATTHTVGNNGDYLAITIGWGLGVTFGLLVSAGISGGHLNPA 112
Query: 84 VTVAAFMLGDISVADALVYVMAQLIGAVLGYAT--------LGHHGIPML-WQSEVLKFI 134
VT+ + G Y +AQL+GA +G A HGIP L W++ F
Sbjct: 113 VTLGNAVFGKFPWKKLPGYFVAQLLGAFVGAACVYGLYYGFFKDHGIPELPWETMANGFA 172
>gnl|CDD|219119 pfam06645, SPC12, Microsomal signal peptidase 12 kDa subunit
(SPC12). This family consists of several microsomal
signal peptidase 12 kDa subunit proteins. Translocation
of polypeptide chains across the endoplasmic reticulum
(ER) membrane is triggered by signal sequences.
Subsequently, signal recognition particle interacts
with its membrane receptor and the ribosome-bound
nascent chain is targeted to the ER where it is
transferred into a protein-conducting channel. At some
point, a second signal sequence recognition event takes
place in the membrane and translocation of the nascent
chain through the membrane occurs. The signal sequence
of most secretory and membrane proteins is cleaved off
at this stage. Cleavage occurs by the signal peptidase
complex (SPC) as soon as the lumenal domain of the
translocating polypeptide is large enough to expose its
cleavage site to the enzyme. The signal peptidase
complex is possibly also involved in proteolytic events
in the ER membrane other than the processing of the
signal sequence, for example the further digestion of
the cleaved signal peptide or the degradation of
membrane proteins. Mammalian signal peptidase is as a
complex of five different polypeptide chains. This
family represents the 12 kDa subunit (SPC12).
Length = 76
Score = 29.9 bits (68), Expect = 0.19
Identities = 9/46 (19%), Positives = 19/46 (41%)
Query: 26 LAEILGTFGLMFFGCMSCIGGFSQGSVPSLQPALMFGFVVSTIITI 71
LAE L ++ F +S I G+ + G ++ ++ +
Sbjct: 8 LAEKLYQIIILIFAVISFIVGYITQDFSLTVYIGLAGTALTLLLVL 53
>gnl|CDD|225100 COG2189, COG2189, Adenine specific DNA methylase Mod [DNA
replication, recombination, and repair].
Length = 590
Score = 30.2 bits (68), Expect = 1.1
Identities = 12/43 (27%), Positives = 15/43 (34%), Gaps = 3/43 (6%)
Query: 182 FINNI-W-TKQWIYWTAPTLAGTVTPLIYTYA-FERKRLEKQF 221
FI NI W K + I YA + RLE +
Sbjct: 219 FITNIIWKKKNSSGSDSNKFVYIDHEYILVYAKNKYNRLELEL 261
>gnl|CDD|223387 COG0310, CbiM, ABC-type Co2+ transport system, permease component
[Inorganic ion transport and metabolism].
Length = 204
Score = 29.3 bits (66), Expect = 1.2
Identities = 29/157 (18%), Positives = 52/157 (33%), Gaps = 9/157 (5%)
Query: 61 FGFVVSTIITIFGHISSAHLNPSVTVAAFMLG--DISVADALVYVMAQLIGAVLGYATLG 118
F FV+S + SS H +AA +LG ++A A+V ++ L A G LG
Sbjct: 49 FIFVLSALKIPSPGGSSVHP-IGGGLAAILLGPLATALAIAIVLLVQALFFAHGGITALG 107
Query: 119 HHGIPMLWQSEVLKFIFPWLNLVEVEVTGGGGVGSIATYYQLYQVNGPYTGASMNAARSI 178
+ M + +IF L ++ + AT +
Sbjct: 108 ANTFIMGIIGPFVGYIFYRLLRKRLDRGLAAFIADWATL------VVAAVQLAFAFPAGG 161
Query: 179 APAFINNIWTKQWIYWTAPTLAGTVTPLIYTYAFERK 215
+F+ G +T + +Y + +
Sbjct: 162 YASFLKFPAMLAVHQIPLAIAEGIITAGVVSYLAKMR 198
>gnl|CDD|232819 TIGR00087, surE, 5'/3'-nucleotidase SurE. This protein family
originally was named SurE because of its role in
stationary phase survivalin Escherichia coli. In E.
coli, surE is next to pcm, an L-isoaspartyl protein
repair methyltransferase that is also required for
stationary phase survival. Recent work (PMID:15489502)
shows that viewing SurE as an acid phosphatase (3.1.3.2)
is not accurate. Rather, SurE in E. coli, Thermotoga
maritima, and Pyrobaculum aerophilum acts strictly on
nucleoside 5'- and 3'-monophosphates. E. coli SurE is
Recommended cutoffs are 15 for homology, 40 for probable
orthology, and 200 for orthology with full-length
homology [Cellular processes, Adaptations to atypical
conditions].
Length = 244
Score = 27.3 bits (61), Expect = 5.7
Identities = 8/40 (20%), Positives = 16/40 (40%)
Query: 150 GVGSIATYYQLYQVNGPYTGASMNAARSIAPAFINNIWTK 189
GV +IA Q++ + + A + A + N+
Sbjct: 120 GVPAIAISLQIFNGYKNSSPLDFDIAAKVTNAIVKNLLKN 159
>gnl|CDD|217327 pfam03030, H_PPase, Inorganic H+ pyrophosphatase. The H+
pyrophosphatase is an transmembrane proton pump involved
in establishing the H+ electrochemical potential
difference between the vacuole lumen and the cell
cytosol. Vacuolar-type H(+)-translocating inorganic
pyrophosphatases have long been considered to be
restricted to plants and to a few species of
photo-trophic bacteria. However, in recent
investigations, these pyrophosphatases have been found
in organisms as disparate as thermophilic Archaea and
parasitic protists.
Length = 669
Score = 27.4 bits (62), Expect = 7.1
Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 10/63 (15%)
Query: 54 SLQPALMFGFVVSTIITIFGHISSAHLNPSVTVAAFMLGDISVADALVYV-MAQLIGAVL 112
+ AL G +VS I++I + ++L + +A LIG V
Sbjct: 278 NPMKALNRGLIVSAILSIVA---------TYFATYWLLPAAGKGFLWWNLFLAVLIGLVA 328
Query: 113 GYA 115
G
Sbjct: 329 GAL 331
>gnl|CDD|239161 cd02760, MopB_Phenylacetyl-CoA-OR, The MopB_Phenylacetyl-CoA-OR CD
contains the phenylacetyl-CoA:acceptor oxidoreductase,
large subunit (PadB2), and other related proteins. The
phenylacetyl-CoA:acceptor oxidoreductase has been
characterized as a membrane-bound molybdenum-iron-sulfur
enzyme involved in anaerobic metabolism of phenylalanine
in the denitrifying bacterium Thauera aromatica. Members
of this CD belong to the molybdopterin_binding (MopB)
superfamily of proteins.
Length = 760
Score = 27.2 bits (60), Expect = 9.3
Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 9/68 (13%)
Query: 115 ATLGHHGIPMLWQSEVLKFIFPWLNLVEVEVTGGGGVGSIATYYQLYQVNGPYTGASMNA 174
AT GH G P ++ F+ W ++ G GV + + + LY G +
Sbjct: 113 ATFGHGGTPAMYMGTFPAFLAAW-GPIDFSFGSGQGVKCVHSEH-LY-------GEFWHR 163
Query: 175 ARSIAPAF 182
A ++A
Sbjct: 164 AFTVAADT 171
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.139 0.438
Gapped
Lambda K H
0.267 0.0753 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,612,841
Number of extensions: 1110506
Number of successful extensions: 1632
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1594
Number of HSP's successfully gapped: 106
Length of query: 221
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 128
Effective length of database: 6,812,680
Effective search space: 872023040
Effective search space used: 872023040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (25.7 bits)