RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10345
(221 letters)
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0
junctions, AQP0, lens MIP, lipid-protein interac
membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries}
SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A*
Length = 263
Score = 149 bits (377), Expect = 1e-44
Identities = 64/218 (29%), Positives = 103/218 (47%), Gaps = 25/218 (11%)
Query: 25 CLAEILGTFGLMFFGCMSCIGGFSQGSVPSLQPALMFGFVVSTIITIFGHISSAHLNPSV 84
AE T +FFG + + ++ G + LQ AL FG ++T++ GHIS AH+NP+V
Sbjct: 13 IFAEFFATLFYVFFGLGASLR-WAPGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAV 71
Query: 85 TVAAFMLGDISVADALVYVMAQLIGAVLGYATL---------GHHGIPML------WQSE 129
T A + +S+ A+ YV+AQL+GAV G A L G+ + L Q+
Sbjct: 72 TFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVGQAT 131
Query: 130 VLKFIFPWLNLVEVEVT------GGGGVGSIA---TYYQLYQVNGPYTGASMNAARSIAP 180
+++ ++ + T G G ++A + + YTGA MN ARS AP
Sbjct: 132 IVEIFLTLQFVLCIFATYDERRNGRLGSVALAVGFSLTLGHLFGMYYTGAGMNPARSFAP 191
Query: 181 AFINNIWTKQWIYWTAPTLAGTVTPLIYTYAFERKRLE 218
A + +T W+YW P + + L+Y + +
Sbjct: 192 AILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFPRLKS 229
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C
membrane protein, baculovirus expression system,
glycoprote membrane; 10.00A {Rattus norvegicus}
Length = 340
Score = 150 bits (380), Expect = 3e-44
Identities = 62/232 (26%), Positives = 90/232 (38%), Gaps = 55/232 (23%)
Query: 25 CLAEILGTFGLMFFGCMSCI---GGFSQGSVPSLQPALMFGFVVSTIITIFGHISSAHLN 81
AE L + S I G + V + +L FG ++T++ FGHIS H+N
Sbjct: 55 VTAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIATMVQCFGHISGGHIN 114
Query: 82 PSVTVAAFMLGDISVADALVYVMAQLIGAVLGYATLGHHGIPMLWQSEVLKFIFPWL--- 138
P+VTVA IS+A ++ Y+ AQ +GA++G +L + P
Sbjct: 115 PAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAG--------------ILYLVTPPSVVG 160
Query: 139 ----NLVEVEVTGGGGVGS--IATYYQLYQV----------------------------- 163
V +T G G+ I T+ ++ +
Sbjct: 161 GLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSVALAIGFSVAIGHLF 220
Query: 164 NGPYTGASMNAARSIAPAFINNIWTKQWIYWTAPTLAGTVTPLIYTYAFERK 215
YTGASMN ARS PA I W WIYW P + + +Y Y F
Sbjct: 221 AINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVFCPD 272
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional
crystal, electron diffraction, electron microscopy,
membrane protein; HET: PEE; 2.80A {Rattus norvegicus}
PDB: 2d57_A
Length = 301
Score = 147 bits (374), Expect = 7e-44
Identities = 62/218 (28%), Positives = 93/218 (42%), Gaps = 27/218 (12%)
Query: 25 CLAEILGTFGLMFFGCMSCI---GGFSQGSVPSLQPALMFGFVVSTIITIFGHISSAHLN 81
AE L + S I G + V + +L FG ++T++ FGHIS H+N
Sbjct: 16 VTAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIATMVQCFGHISGGHIN 75
Query: 82 PSVTVAAFMLGDISVADALVYVMAQLIGAVLGYATL---------GHHGIPML------W 126
P+VTVA IS+A ++ Y+ AQ +GA++G L G G+ +
Sbjct: 76 PAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTTVHGNLTAG 135
Query: 127 QSEVLKFI------FPWLNLVEVEVTGGGGVGSIA---TYYQLYQVNGPYTGASMNAARS 177
+++ I F + + T G ++A + + YTGASMN ARS
Sbjct: 136 HGLLVELIITFQLVFTIFASCDDKRTDVTGSVALAIGFSVAIGHLFAINYTGASMNPARS 195
Query: 178 IAPAFINNIWTKQWIYWTAPTLAGTVTPLIYTYAFERK 215
PA I W WIYW P + + +Y Y F
Sbjct: 196 FGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVFCPD 233
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water
transport, X-RAY diffraction, lipid, phosphatidylserine,
PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo
sapiens}
Length = 266
Score = 143 bits (362), Expect = 2e-42
Identities = 57/235 (24%), Positives = 88/235 (37%), Gaps = 54/235 (22%)
Query: 25 CLAEILGTFGLMFFGCMSCIGGFSQGSVPSLQPALMFGFVVSTIITIFGHISSAHLNPSV 84
AE L T +FFG S + + LQ AL FG + T+ G +S H+NP++
Sbjct: 15 VFAEFLATLIFVFFGLGSALK-WPSALPTILQIALAFGLAIGTLAQALGPVSGGHINPAI 73
Query: 85 TVAAFMLGDISVADALVYVMAQLIGAVLGYATLGHHGIPMLWQSEVLKFIFPW------- 137
T+A + IS+ A YV AQL+GA+ G +L + P
Sbjct: 74 TLALLVGNQISLLRAFFYVAAQLVGAIAGAG--------------ILYGVAPLNARGNLA 119
Query: 138 LNLVEVEVTGGGGVGS--IATYYQLYQV-----------------------------NGP 166
+N + T G + I T+ +
Sbjct: 120 VNALNNNTTQGQAMVVELILTFQLALCIFASTDSRRTSPVGSPALSIGLSVTLGHLVGIY 179
Query: 167 YTGASMNAARSIAPAFINNIWTK-QWIYWTAPTLAGTVTPLIYTYAFERKRLEKQ 220
+TG SMN ARS PA + N ++ W++W P + + ++Y Y L
Sbjct: 180 FTGCSMNPARSFGPAVVMNRFSPAHWVFWVGPIVGAVLAAILYFYLLFPNSLSLS 234
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane
helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1
PDB: 1h6i_A 1fqy_A 1ih5_A
Length = 271
Score = 142 bits (361), Expect = 3e-42
Identities = 57/241 (23%), Positives = 92/241 (38%), Gaps = 60/241 (24%)
Query: 25 CLAEILGTFGLMFFGCMSCIG--------GFSQGSVPSLQPALMFGFVVSTIITIFGHIS 76
+AE L +F S +G + +++ +L FG ++T+ GHIS
Sbjct: 14 VVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVGHIS 73
Query: 77 SAHLNPSVTVAAFMLGDISVADALVYVMAQLIGAVLGYATLGHHGIPMLWQSEVLKFIFP 136
AHLNP+VT+ + ISV A++Y++AQ +GA++ A +L I
Sbjct: 74 GAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATA--------------ILSGITS 119
Query: 137 WL-------NLVEVEVTGGGGVGS--IATYYQLYQV------------------------ 163
L N + V G G+G I T + V
Sbjct: 120 SLPDNSLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGSGPLAIGFSVA 179
Query: 164 -----NGPYTGASMNAARSIAPAFINNIWTKQWIYWTAPTLAGTVTPLIYTYAFERKRLE 218
YTG +N ARS + I + + WI+W P + + LIY + + +
Sbjct: 180 LGHLLAIDYTGCGINPARSFGSSVITHNFQDHWIFWVGPFIGAALAVLIYDFILAPRSSD 239
Query: 219 K 219
Sbjct: 240 L 240
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein
structure initiative, center for structures of MEMB
proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo
sapiens}
Length = 223
Score = 141 bits (357), Expect = 4e-42
Identities = 62/229 (27%), Positives = 90/229 (39%), Gaps = 55/229 (24%)
Query: 25 CLAEILGTFGLMFFGCMSCI---GGFSQGSVPSLQPALMFGFVVSTIITIFGHISSAHLN 81
AE L + S I G V + +L FG ++T++ FGHIS H+N
Sbjct: 7 VTAEFLAMLIFVLLSLGSTINWGGTEKPLPVDMVLISLCFGLSIATMVQCFGHISGGHIN 66
Query: 82 PSVTVAAFMLGDISVADALVYVMAQLIGAVLGYATLGHHGIPMLWQSEVLKFIFPWL--- 138
P+VTVA IS+A ++ Y+ AQ +GA++G +L + P
Sbjct: 67 PAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAG--------------ILYLVTPPSVVG 112
Query: 139 ----NLVEVEVTGGGGVGS--IATYYQLYQV----------------------------- 163
+V +T G G+ I T+ ++ +
Sbjct: 113 GLGVTMVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIALAIGFSVAIGHLF 172
Query: 164 NGPYTGASMNAARSIAPAFINNIWTKQWIYWTAPTLAGTVTPLIYTYAF 212
YTGASMN ARS PA I W WIYW P + + +Y Y F
Sbjct: 173 AINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGGLYEYVF 221
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P
protein structure initiative, center for structures of
MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli}
PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A*
3nka_A* 3nkc_A*
Length = 234
Score = 137 bits (348), Expect = 1e-40
Identities = 54/226 (23%), Positives = 84/226 (37%), Gaps = 35/226 (15%)
Query: 25 CLAEILGTFGLMFFGCMSCI--GGFSQGSVPSLQPALMFGFVVSTIITIFGHISSAHLNP 82
AE GTF L+F G S + GF + + AL FG V T+ GHIS H NP
Sbjct: 8 LAAESFGTFWLVFGGSGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNP 67
Query: 83 SVTVAAFMLGDISVADALVYVMAQLIGAVLGYATL--GHHGIPMLWQSEVLKFIFPWLNL 140
+VT+ + G + + YV+AQ++G ++ A L G + +
Sbjct: 68 AVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEH 127
Query: 141 VEVEVTGGGGVGS--IATYYQLYQV---------------------------NGPYTGAS 171
+ + + + L + + P T S
Sbjct: 128 SPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAPIAIGLACTLIHLISIPVTNTS 187
Query: 172 MNAARSIAPAFINNIWTKQ--WIYWTAPTLAGTVTPLIYTYAFERK 215
+N ARS A A W + W +W P + G + LIY E++
Sbjct: 188 VNPARSTAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEKR 233
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel,
structu genomics, PSI-2, protein structure initiative;
2.01A {Agrobacterium tumefaciens str}
Length = 256
Score = 133 bits (337), Expect = 8e-39
Identities = 55/223 (24%), Positives = 82/223 (36%), Gaps = 33/223 (14%)
Query: 25 CLAEILGTFGLMFFGCMSCI--GGFSQGSVPSLQPALMFGFVVSTIITIFGHISSAHLNP 82
LAE GTF L+F GC S + F + + AL FG V T+ G IS H NP
Sbjct: 33 LLAEFFGTFWLVFGGCGSAVFAAAFPELGIGFTGVALAFGLTVLTMAYAVGGISGGHFNP 92
Query: 83 SVTVAAFMLGDISVADALVYVMAQLIGAVLGYATLGHHGIPMLWQSEVLKFIFPWLNLVE 142
+V+V + G + + YV+AQ+ GA++ A L +
Sbjct: 93 AVSVGLTVAGRFPASSLVPYVIAQVAGAIVAAAALYVIATGKAGIDLGGFASNGYGEHSP 152
Query: 143 VEVTGGGGVGS--IATYYQLYQV---------------------------NGPYTGASMN 173
+ + I T + L + + P T S+N
Sbjct: 153 GGYSLVSALLIEIILTAFFLIVILGSTHGRVPAGFAPIAIGLALTLIHLISIPVTNTSVN 212
Query: 174 AARSIAPAFINNIWTKQ--WIYWTAPTLAGTVTPLIYTYAFER 214
ARS A W Q W++W AP + G +I+ E+
Sbjct: 213 PARSTGQALFVGGWALQQLWLFWLAPIVGGAAGAVIWKLFGEK 255
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport
protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A
1z98_A 2b5f_A
Length = 304
Score = 132 bits (335), Expect = 4e-38
Identities = 53/236 (22%), Positives = 86/236 (36%), Gaps = 48/236 (20%)
Query: 25 CLAEILGTFGLMFFGCMSCIGGFSQGSVPS----LQPALMFGFVVSTIITIFGHISSAHL 80
+AE + T ++ + IG + V L A FG ++ ++ IS H+
Sbjct: 64 AIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGHI 123
Query: 81 NPSVTVAAFMLGDISVADALVYVMAQLIGAVLGYATLGHHGIPMLWQSEVLKFIFPWLNL 140
NP+VT F+ + + ALVY++AQ +GA+ G + + N
Sbjct: 124 NPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLV------KAFMKGPYNQFGGGANS 177
Query: 141 VEVEVTGGGGVGS--IATYYQLYQV---------------------------------NG 165
V + G +G+ I T+ +Y V
Sbjct: 178 VALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATI 237
Query: 166 PYTGASMNAARSIAPAFINN---IWTKQWIYWTAPTLAGTVTPLIYTYAFERKRLE 218
P TG +N ARS A I N +W QWI+W P + V + Y ++
Sbjct: 238 PITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYVLRAAAIK 293
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane
protein; HET: BOG; 1.15A {Komagataella pastoris} PDB:
2w1p_A*
Length = 279
Score = 131 bits (331), Expect = 1e-37
Identities = 41/231 (17%), Positives = 64/231 (27%), Gaps = 57/231 (24%)
Query: 25 CLAEILGTFGLMFFGCMSCIGGFSQGSVPS--------LQPALMFGFVVSTIITIFGHIS 76
E +GTF ++ + P + + FGF V + I +S
Sbjct: 48 MSGEFVGTFLFLWSAFVIAQIANQAPETPDGGSNPAQLIMISFGFGFGVMVGVFITYRVS 107
Query: 77 SAHLNPSVTVAAFMLGDISVADALVYVMAQLIGAVLGYATLGHHGIPMLWQSEVLKFIFP 136
+LNP+VT+A + I ++ Q++ + + P
Sbjct: 108 GGNLNPAVTLALVLARAIPPFRGILMAFTQIVAGMAAAG--------------AASAMTP 153
Query: 137 WLNLVEVEVTGGGGVGS------IATYYQLYQV--------------------------- 163
+ GG T V
Sbjct: 154 GEIAFANALGGGASRTRGLFLEAFGTAILCLTVLMLAVEKHRATWFAPFVIGIALLIAHL 213
Query: 164 -NGPYTGASMNAARSIAPAFINNIWTKQ-WIYWTAPTLAGTVTPLIYTYAF 212
YTGA +N ARS PA + WIYW P L + I+
Sbjct: 214 ICIYYTGAGLNPARSFGPAVAARSFPNYHWIYWLGPILGAFLAYSIWQMWK 264
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel,
structural GENO PSI-2, protein structure initiative;
1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A
3ne2_A*
Length = 246
Score = 107 bits (268), Expect = 1e-28
Identities = 57/237 (24%), Positives = 86/237 (36%), Gaps = 49/237 (20%)
Query: 25 CLAEILGTFGLMFFGCMSCIGGFSQGSVPSLQP------------------ALMFGFVVS 66
C+AE +GTF L+FFG S S + L FGF ++
Sbjct: 8 CIAEFIGTFILVFFGAGSAAVTLMIASGGTSPNPFNIGIGLLGGLGDWVAIGLAFGFAIA 67
Query: 67 TIITIFGHISSAHLNPSVTVAAFMLGDISVADALVYVMAQLIGAVLGYATL------GHH 120
I G+IS H+NP+VT+ + + + + Y++AQL+GA G G
Sbjct: 68 ASIYALGNISGCHINPAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGSFIFLQCAGIGAA 127
Query: 121 GIPMLWQSEVLKFIFPWLNLV-EVEVT---------------GGGGVGSIA---TYYQLY 161
+ L + I W ++ EV T G I T +
Sbjct: 128 TVGGLGATAPFPGISYWQAMLAEVVGTFLLMITIMGIAVDERAPKGFAGIIIGLTVAGII 187
Query: 162 QVNGPYTGASMNAARSIAPAFINNI------WTKQWIYWTAPTLAGTVTPLIYTYAF 212
G +G+S+N AR+ P + I W IY P + + L Y Y
Sbjct: 188 TTLGNISGSSLNPARTFGPYLNDMIFAGTDLWNYYSIYVIGPIVGAVLAALTYQYLT 244
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport,
structural GEN PSI-2, protein structure initiative; HET:
BOG; 2.05A {Plasmodium falciparum}
Length = 258
Score = 93.4 bits (233), Expect = 2e-23
Identities = 49/232 (21%), Positives = 81/232 (34%), Gaps = 42/232 (18%)
Query: 25 CLAEILGTFGLMFFGCMSCIGGFSQGSVPS-LQPALMFGFVVSTIITIFGHISSAHLNPS 83
+ E LGTF LMF G + + G + L +G V I + +S AHLN +
Sbjct: 13 FIGEFLGTFVLMFLGEGATANFHTTGLSGDWYKLCLGWGLAVFFGILVSAKLSGAHLNLA 72
Query: 84 VTVAAFMLGDISVADALVYVMAQLIGAVLGYATLGHHGIPMLWQSEVLKFIF-----PWL 138
V++ + + VY AQL+GA +G +T+ + S++ +F + P +
Sbjct: 73 VSIGLSSINKFDLKKIPVYFFAQLLGAFVGTSTVYGLYHGFISNSKIPQFAWETSRNPSI 132
Query: 139 N-----LVEV-----------EVTGGGGVGSIATYYQLYQVN----------GPYTGASM 172
+ E+ V G V G TG ++
Sbjct: 133 SLTGAFFNELILTGILLLVILVVVDENICGKFHILKLSSVVGLIILCIGITFGGNTGFAL 192
Query: 173 NAARSIAPAF------INNIWTKQ----WIYWTAPTLAGTVTPLIYTYAFER 214
N +R + F + +TK W+ AP + V Y
Sbjct: 193 NPSRDLGSRFLSLIAYGKDTFTKDNFYFWVPLVAPCVGSVVFCQFYDKVICP 244
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane
channel protein, transport PROT; HET: BOG; 2.10A
{Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A*
1ldi_A*
Length = 281
Score = 82.3 bits (204), Expect = 4e-19
Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 25 CLAEILGTFGLMFFGCMSCIG-GFSQGSVPSLQPALMFGFVVSTIITIFGHISSAHLNPS 83
C+AE LGT L+FFG + S + +++FG V+ I + +S AHLNP+
Sbjct: 11 CIAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIFGLGVAMAIYLTAGVSGAHLNPA 70
Query: 84 VTVAAFMLGDISVADALVYVMAQLIGAVLGYATL 117
VT+A ++ + ++++Q+ GA A +
Sbjct: 71 VTIALWLFACFDKRKVIPFIVSQVAGAFCAAALV 104
Score = 39.2 bits (92), Expect = 5e-04
Identities = 21/100 (21%), Positives = 40/100 (40%), Gaps = 14/100 (14%)
Query: 26 LAEILGTFGLMFFGCMSCIGGFSQGSVPSLQPALMFGFVVSTIITIFGHISSAHLNP--- 82
E++ T LM + + G L+ G +++ I G ++ +NP
Sbjct: 150 AVEMVITAILMG--LILALTDDGNGVPRGPLAPLLIGLLIAVIGASMGPLTGTAMNPARD 207
Query: 83 -SVTVAAFMLGDISVAD--------ALVYVMAQLIGAVLG 113
V A++ G +VA LV + ++GA++G
Sbjct: 208 FGPKVFAWLAGWGNVAFTGGRDIPYFLVPLFGPIVGAIVG 247
Score = 34.9 bits (81), Expect = 0.014
Identities = 13/63 (20%), Positives = 16/63 (25%), Gaps = 13/63 (20%)
Query: 165 GPYTGASMNAARSIAPAFI-------------NNIWTKQWIYWTAPTLAGTVTPLIYTYA 211
GP TG +MN AR P + P + V Y
Sbjct: 195 GPLTGTAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLFGPIVGAIVGAFAYRKL 254
Query: 212 FER 214
R
Sbjct: 255 IGR 257
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 39.9 bits (93), Expect = 5e-04
Identities = 24/120 (20%), Positives = 38/120 (31%), Gaps = 16/120 (13%)
Query: 4 TGGGD--ETSQDRCTFIHRALEICLAEILGTFGLMFFGCMSCIGGFSQGSVPSLQPALM- 60
D E +R IH E L +G F+ + L+ AL
Sbjct: 1278 IPSEDQNEFLLERTREIHNEAESQLRAAQQQWGNDFYK--------RDPRIAPLRGALAT 1329
Query: 61 FGFVVSTIITIFGHISSAHLNPSVTVAAF--MLGDISVADA-LVYVMAQ--LIGAVLGYA 115
+G + + H +S N A M+ + ++ V + Q L G G A
Sbjct: 1330 YGLTIDDLGVASFHGTSTKANDKNESATINEMMKHLGRSEGNPVIGVFQKFLTGHPKGAA 1389
Score = 31.8 bits (72), Expect = 0.21
Identities = 9/55 (16%), Positives = 25/55 (45%), Gaps = 13/55 (23%)
Query: 137 WLNLVEVEVTGGGGVGSIATYYQLYQV---NGPYTGASMNAARS--IAPAFINNI 186
++++ EV G G+G ++ +++ + P ++ + +FIN +
Sbjct: 1038 YVHVSEVGNCSGSGMGGVSALRGMFKDRFKDEP--------VQNDILQESFINTM 1084
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.8 bits (82), Expect = 0.010
Identities = 25/143 (17%), Positives = 41/143 (28%), Gaps = 58/143 (40%)
Query: 56 QPALMFGFVVSTIITIF----------------GHIS----SAHLNPSVTVAAFMLGDIS 95
QPAL ++ F GH S +A L ++A M S
Sbjct: 1733 QPAL---TLME--KAAFEDLKSKGLIPADATFAGH-SLGEYAA-L---ASLADVM----S 1778
Query: 96 VADA--LVYVMAQLIGAVLGYATLGHHGIPML----------WQSEVLKFIFPWLNLVEV 143
+ +V+ + + LG M+ + E L+++ VE
Sbjct: 1779 IESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYV------VER 1832
Query: 144 EVTGGGGVGSIATYYQLYQVNGP 166
G + I Y N
Sbjct: 1833 VGKRTGWLVEIVNY------NVE 1849
Score = 30.8 bits (69), Expect = 0.39
Identities = 29/201 (14%), Positives = 57/201 (28%), Gaps = 78/201 (38%)
Query: 66 STIITIFG----------------HISSAHLNPSVTVAAFMLGDISVADALVYVMAQLIG 109
+ ++ IFG + + +A L ++LI
Sbjct: 154 AQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETL-------------SELIR 200
Query: 110 AVLGYATLGHHGIPMLWQSEVLKFIFPWLN----------LVEVEVTGGG-GVGSIATYY 158
L + G+ I WL L+ + ++ GV +A Y
Sbjct: 201 TTLDAEKVFTQGLN----------ILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYV 250
Query: 159 QLYQVNG--P------YTGASMN-----AARSIAPA-----FINNI-WTKQWIYW----- 194
++ G P GA+ + A +IA F ++ +++
Sbjct: 251 VTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRC 310
Query: 195 --TAPTLAGTVTPLIYTYAFE 213
P + + P I + E
Sbjct: 311 YEAYPNTS--LPPSILEDSLE 329
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.5 bits (73), Expect = 0.100
Identities = 21/128 (16%), Positives = 31/128 (24%), Gaps = 49/128 (38%)
Query: 81 NPSVTVAAFMLG--------DISVADALVYVMAQLIGAVLGYATLGHHGIPMLWQSEVLK 132
N AF L V D L A + +L HH + L EV
Sbjct: 255 NAKA-WNAFNLSCKILLTTRFKQVTDFLS-------AATTTHISLDHHSMT-LTPDEVKS 305
Query: 133 FIFPWLNLVEVEVTGGGGVGSIATYYQLYQVNGPYTGASMNAARSIAPAFINNIWTK--- 189
+ +L+ + L P + P ++ I
Sbjct: 306 LLLKYLD-CRPQ--------------DL-----P------REVLTTNPRRLSIIAESIRD 339
Query: 190 ---QWIYW 194
W W
Sbjct: 340 GLATWDNW 347
>1x9l_A CUI-DR1885; copper binding protein, solution ST holo-form,
structural proteomics in europe, spine, structur
genomics; NMR {Deinococcus radiodurans} SCOP: b.2.10.1
PDB: 2jqa_A
Length = 149
Score = 28.6 bits (63), Expect = 0.85
Identities = 12/52 (23%), Positives = 18/52 (34%)
Query: 70 TIFGHISSAHLNPSVTVAAFMLGDISVADALVYVMAQLIGAVLGYATLGHHG 121
T+ H A P+ A ++V A V + I Y TL +
Sbjct: 4 TMPAHTPPAQTAPAAQKAGAQALPVTVQGATVAAVPPSIRDTAAYMTLTNKS 55
>2b3y_A Iron-responsive element binding protein 1; IRP1 IRE-IRP1 aconitase
activity, lyase; 1.85A {Homo sapiens} SCOP: c.8.2.1
c.83.1.1 PDB: 2b3x_A 3snp_A 3sn2_A 2ipy_A
Length = 888
Score = 27.5 bits (62), Expect = 3.7
Identities = 9/18 (50%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
Query: 28 EILGTFGLMFFGCMSCIG 45
LG F ++ +GCM+CIG
Sbjct: 491 SQLG-FDVVGYGCMTCIG 507
>2ret_A Pseudopilin EPSI; general secretion pathway, cholera, pseudopilus,
type 4 PILI biogenesis, methylation, protein transport;
HET: MSE; 2.21A {Vibrio vulnificus} SCOP: d.24.1.7 PDB:
3cfi_A
Length = 103
Score = 25.7 bits (56), Expect = 6.3
Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 5/64 (7%)
Query: 96 VAD---ALVYVMAQLIGAVLGYATLGHHGIPMLWQSEVLKFIFPWLNLVEVEVTGGGGVG 152
VAD A+V + + + A G L G W+ + P L +V V
Sbjct: 20 VADNQMAMVMLNPKNLKASNGEEELA--GQTWYWKVAPVATTQPLLKAFDVSVAATTQAS 77
Query: 153 SIAT 156
I T
Sbjct: 78 PIIT 81
>3cn9_A Carboxylesterase; alpha/beta hydrolase fold super-family,
hydrolase; HET: 2PE; 2.09A {Pseudomonas aeruginosa} PDB:
3cn7_A*
Length = 226
Score = 26.2 bits (58), Expect = 7.8
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 43 CIGGFSQGSVPSLQPAL 59
+ GFSQG L A
Sbjct: 119 ILAGFSQGGAVVLHTAF 135
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane
protein, P-type ATPase, active transport, cryo-electron
microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Length = 920
Score = 26.5 bits (59), Expect = 9.4
Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 46 GFSQGSVPS--LQPALMFGFVVSTIITIFGHISSAHLNPS--VTVAAFMLGDISVADALV 101
G S+PS L A+ +++T TI+G + + V + F G + +
Sbjct: 816 GPFWSSIPSWQLSGAIFLVDILATCFTIWGWFEHSDTSIVAVVRIWIFSFGIFCIMGGVY 875
Query: 102 YVMAQLIG 109
Y++ +G
Sbjct: 876 YILQDSVG 883
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.139 0.438
Gapped
Lambda K H
0.267 0.0640 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,555,926
Number of extensions: 214750
Number of successful extensions: 562
Number of sequences better than 10.0: 1
Number of HSP's gapped: 506
Number of HSP's successfully gapped: 48
Length of query: 221
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 131
Effective length of database: 4,188,903
Effective search space: 548746293
Effective search space used: 548746293
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.2 bits)