RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10345
(221 letters)
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]}
Length = 249
Score = 96.7 bits (240), Expect = 4e-25
Identities = 55/223 (24%), Positives = 93/223 (41%), Gaps = 32/223 (14%)
Query: 25 CLAEILGTFGLMFFGCMSCIGGFSQ--------GSVPSLQPALMFGFVVSTIITIFGHIS 76
+AE L +F S +G +++ +L FG ++T+ GHIS
Sbjct: 14 VVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVGHIS 73
Query: 77 SAHLNPSVTVAAFMLGDISVADALVYVMAQLIGAVLGYATLGHHGIPMLWQSEVLKFIFP 136
AHLNP+VT+ + ISV A++Y++AQ +GA++ A L + S L + P
Sbjct: 74 GAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPDNSLGLNALAP 133
Query: 137 WLN-----LVEVEVT-------------------GGGGVGSIATYYQLYQVNGPYTGASM 172
+N +E+ T G G + + + + YTG +
Sbjct: 134 GVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGSGPLAIGFSVALGHLLAIDYTGCGI 193
Query: 173 NAARSIAPAFINNIWTKQWIYWTAPTLAGTVTPLIYTYAFERK 215
N ARS + I + + WI+W P + + LIY + +
Sbjct: 194 NPARSFGSSVITHNFQDHWIFWVGPFIGAALAVLIYDFILAPR 236
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId:
9913]}
Length = 234
Score = 94.4 bits (234), Expect = 2e-24
Identities = 62/215 (28%), Positives = 100/215 (46%), Gaps = 25/215 (11%)
Query: 25 CLAEILGTFGLMFFGCMSCIGGFSQGSVPSLQPALMFGFVVSTIITIFGHISSAHLNPSV 84
AE + +FFG + + + G + LQ AL FG ++T++ GHIS AH+NP+V
Sbjct: 8 ICAEFFASLFYVFFGLGASLRW-APGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAV 66
Query: 85 TVAAFMLGDISVADALVYVMAQLIGAVLGYATLGHHGIPMLWQSEVLKFIFPWLN----- 139
T A + +S+ A+ Y++AQL+GAV G A L P + + L + P ++
Sbjct: 67 TFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVGQAT 126
Query: 140 LVEVEVT-------------------GGGGVGSIATYYQLYQVNGPYTGASMNAARSIAP 180
+VE+ +T G + + + YTGA MN ARS AP
Sbjct: 127 IVEIFLTLQFVLCIFATYDERRNGRLGSVALAVGFSLTLGHLFGMYYTGAGMNPARSFAP 186
Query: 181 AFINNIWTKQWIYWTAPTLAGTVTPLIYTYAFERK 215
A + +T W+YW P + + L+Y + +
Sbjct: 187 AILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFPR 221
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]}
Length = 231
Score = 92.1 bits (228), Expect = 2e-23
Identities = 61/226 (26%), Positives = 91/226 (40%), Gaps = 35/226 (15%)
Query: 25 CLAEILGTFGLMFFGCMSCI--GGFSQGSVPSLQPALMFGFVVSTIITIFGHISSAHLNP 82
AE GTF L+F GC S + GF + + AL FG V T+ GHIS H NP
Sbjct: 5 LAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNP 64
Query: 83 SVTVAAFMLGDISVADALVYVMAQLIGAVLGYATL------------------------- 117
+VT+ + G + + YV+AQ++G ++ A L
Sbjct: 65 AVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEH 124
Query: 118 ---GHHGIPMLWQSEVLKFIFPWLNLVEVEVTGGGGVGSIA---TYYQLYQVNGPYTGAS 171
G+ + L VL F + + G IA ++ ++ P T S
Sbjct: 125 SPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHLISIPVTNTS 184
Query: 172 MNAARSIAPAFINNIWTKQ--WIYWTAPTLAGTVTPLIYTYAFERK 215
+N ARS A A W + W +W P + G + LIY E++
Sbjct: 185 VNPARSTAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEKR 230
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF
{Escherichia coli [TaxId: 562]}
Length = 254
Score = 79.4 bits (195), Expect = 1e-18
Identities = 47/247 (19%), Positives = 78/247 (31%), Gaps = 57/247 (23%)
Query: 25 CLAEILGTFGLMFFGCMSCIG-GFSQGSVPSLQPALMFGFVVSTIITIFGHISSAHLNPS 83
C+AE LGT L+FFG + S + ++++G V+ I + +S AHLNP+
Sbjct: 6 CIAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIWGLGVAMAIYLTAGVSGAHLNPA 65
Query: 84 VTVAAFMLGDISVADALVYVMAQLIGAVLGYATL-------------------------- 117
VT+A ++ + ++++Q+ GA A +
Sbjct: 66 VTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVD 125
Query: 118 -----------GHHGIPMLWQSEVLKFIFPWLNLVEVEVTGGGGVGSIA------TYYQL 160
+ + V+ I L L + G G +A +
Sbjct: 126 LAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGPLAPLLIGLLIAVI 185
Query: 161 YQVNGPYTGASMNAARSIAPAFI-------------NNIWTKQWIYWTAPTLAGTVTPLI 207
GP TG +MN AR P + P + V
Sbjct: 186 GASMGPLTGFAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLFGPIVGAIVGAFA 245
Query: 208 YTYAFER 214
Y R
Sbjct: 246 YRKLIGR 252
>d2reta1 d.24.1.7 (A:30-110) Pseudopilin EpsI {Vibrio vulnificus
[TaxId: 672]}
Length = 81
Score = 28.2 bits (63), Expect = 0.23
Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 5/64 (7%)
Query: 96 VAD---ALVYVMAQLIGAVLGYATLGHHGIPMLWQSEVLKFIFPWLNLVEVEVTGGGGVG 152
VAD A+V + + + A G L G W+ + P L +V V
Sbjct: 14 VADNQMAMVMLNPKNLKASNGEEELA--GQTWYWKVAPVATTQPLLKAFDVSVAATTQAS 71
Query: 153 SIAT 156
I T
Sbjct: 72 PIIT 75
>d1g9fa_ b.29.1.1 (A:) Legume lectin {Soybean (Glycine max) [TaxId:
3847]}
Length = 251
Score = 26.3 bits (57), Expect = 3.4
Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 4/72 (5%)
Query: 137 WLNLVEVEVTGGGGVG-SIATYYQLYQVNGPYTGASMNAARSIAPA---FINNIWTKQWI 192
+L L +G V T+ + P+ G ++N+ RSI NN K I
Sbjct: 107 YLGLFNENESGDQVVAVEFDTFRNSWDPPNPHIGINVNSIRSIKTTSWDLANNKVAKVLI 166
Query: 193 YWTAPTLAGTVT 204
+ A T +
Sbjct: 167 TYDASTSLLVAS 178
>d1rh1a2 f.1.1.1 (A:313-511) Colicin B C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 199
Score = 25.2 bits (55), Expect = 5.7
Identities = 6/53 (11%), Positives = 16/53 (30%), Gaps = 7/53 (13%)
Query: 49 QGSVPSLQPALMFGFVVSTIITIFGHISSAHLNPSVTVAAFMLGDISVADALV 101
+ S +F + + + FG ++ V ++ A +
Sbjct: 140 ISGMASAVALSLFSLTLGSALIAFGLSATV-----VGFVGVVI--AGAIGAFI 185
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.139 0.438
Gapped
Lambda K H
0.267 0.0522 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 855,425
Number of extensions: 38465
Number of successful extensions: 135
Number of sequences better than 10.0: 1
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 11
Length of query: 221
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 139
Effective length of database: 1,281,736
Effective search space: 178161304
Effective search space used: 178161304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.9 bits)