BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10346
(292 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3L4G|A Chain A, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|C Chain C, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|E Chain E, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|G Chain G, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|I Chain I, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|K Chain K, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|M Chain M, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|O Chain O, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
Length = 508
Score = 314 bits (804), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 151/278 (54%), Positives = 202/278 (72%), Gaps = 5/278 (1%)
Query: 5 LTEKILKYLD-TNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELTG 63
+ E +L+ L+ ++ +D+ +LA +HQ VVG +KS++ LGE + E S K WELT
Sbjct: 6 VAELLLRRLEASDGGLDSAELAAELGMEHQAVVGAVKSLQALGEVIEAELRSTKHWELTA 65
Query: 64 EGNQVKDNGSHEVLVFNNVPSEGIGQKELLATFPNAKVGFSKAMAKGWISLDKATG---K 120
EG ++ GSHE VF ++P EG+ Q EL+ P+ KVGFSKAM+ WI +DK+ +
Sbjct: 66 EGEEIAREGSHEARVFRSIPPEGLAQSELM-RLPSGKVGFSKAMSNKWIRVDKSAADGPR 124
Query: 121 VLRKVDSVTDELQAHLKLIANNEYDKVPEANKVDYKKRKLLQEVTIKSFLLKKGPEFSTT 180
V R VDS+ DE+Q L+L+ + +K+ E + + +KRKLL EVT+K++ + KG FST+
Sbjct: 125 VFRVVDSMEDEVQRRLQLVRGGQAEKLGEKERSELRKRKLLAEVTLKTYWVSKGSAFSTS 184
Query: 181 IQKPETELTPEMIASGSWKTLNFKPYNFDAMGISLPSGHLHPLMKVRAEFRQIFLDMGFT 240
I K ETEL+PEMI+SGSW+ FKPYNF A G+ SGHLHPL+KVR++FRQIFL+MGFT
Sbjct: 185 ISKQETELSPEMISSGSWRDRPFKPYNFLAHGVLPDSGHLHPLLKVRSQFRQIFLEMGFT 244
Query: 241 EMPTNNFVESSFWNFDALFQPQQHPARDAHDTFFVTDP 278
EMPT+NF+ESSFWNFDALFQPQQHPARD HDTFF+ DP
Sbjct: 245 EMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRDP 282
>pdb|1PYS|A Chain A, Phenylalanyl-Trna Synthetase From Thermus Thermophilus
pdb|1B7Y|A Chain A, Phenylalanyl Trna Synthetase Complexed With
Phenylalaninyl-Adenylate
pdb|1EIY|A Chain A, The Crystal Structure Of Phenylalanyl-Trna Synthetase From
Thermus Thermophilus Complexed With Cognate Trnaphe
pdb|1B70|A Chain A, Phenylalanyl Trna Synthetase Complexed With Phenylalanine
pdb|1JJC|A Chain A, Crystal Structure At 2.6a Resolution Of Phenylalanyl-trna
Synthetase Complexed With Phenylalanyl-adenylate In The
Presence Of Manganese
pdb|2IY5|A Chain A, Phenylalanyl-Trna Synthetase From Thermus Thermophilus
Complexed With Trna And A Phenylalanyl-Adenylate Analog
pdb|3HFZ|A Chain A, Crystal Structure Of Thermus Thermophilus
Phenylalanyl-Trna Synthetase Comlexed With M-Tyrosine
pdb|3TEH|A Chain A, Crystal Structure Of Thermus Thermophilus
Phenylalanyl-Trna Synthetase Comlexed With L-Dopa
Length = 350
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 212 GISLPSGHLHPLMKVRAEFRQIFLDMGFTEMPTNNFVESSFWNFDALFQPQQHPARDAHD 271
G SL SG LHP+ + E +IF +G+ + VES F+NFDAL P+ HPARD D
Sbjct: 92 GASLFSGGLHPITLMERELVEIFRALGYQAVEGPE-VESEFFNFDALNIPEHHPARDMWD 150
Query: 272 TFFVT 276
TF++T
Sbjct: 151 TFWLT 155
>pdb|2RHQ|A Chain A, Phers From Staphylococcus Haemolyticus- Rational Protein
Engineering And Inhibitor Studies
pdb|2RHS|A Chain A, Phers From Staphylococcus Haemolyticus- Rational Protein
Engineering And Inhibitor Studies
pdb|2RHS|C Chain C, Phers From Staphylococcus Haemolyticus- Rational Protein
Engineering And Inhibitor Studies
Length = 294
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 6/74 (8%)
Query: 209 DAMGISLPS-----GHLHPLMKVRAEFRQIFLDMGFTEMPTNNFVESSFWNFDALFQPQQ 263
+ + ++LPS G HPL + E +FL +G+ E+ VE ++NF+AL P+
Sbjct: 36 ETIDVTLPSRQISIGSKHPLTRTVEEIEDLFLGLGY-EIVDGYEVEQDYYNFEALNLPKS 94
Query: 264 HPARDAHDTFFVTD 277
HPARD D+F++TD
Sbjct: 95 HPARDMQDSFYITD 108
>pdb|2AKW|A Chain A, Crystal Structure Of T.thermophilus Phenylalanyl-trna
Synthetase Complexed With P-cl-phenylalanine
pdb|2ALY|A Chain A, Crystal Structure Of T.Thermophilus Phenylalanyl-Trna
Synthetase Complexed With
5'-O-[n-(L-Tyrosyl)sulphamoyl]adenosine
pdb|2AMC|A Chain A, Crystal Structure Of Phenylalanyl-Trna Synthetase
Complexed With L- Tyrosine
Length = 266
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 212 GISLPSGHLHPLMKVRAEFRQIFLDMGFTEMPTNNFVESSFWNFDALFQPQQHPARDAHD 271
G SL SG LHP+ + E +IF +G+ + VES F+NFDAL P+ HPARD D
Sbjct: 8 GASLFSGGLHPITLMERELVEIFRALGYQAVEGPE-VESEFFNFDALNIPEHHPARDMWD 66
Query: 272 TFFVT 276
TF++T
Sbjct: 67 TFWLT 71
>pdb|3PCO|A Chain A, Crystal Structure Of E. Coli Phenylalanine-Trna Synthetase
Complexed With Phenylalanine And Amp
pdb|3PCO|C Chain C, Crystal Structure Of E. Coli Phenylalanine-Trna Synthetase
Complexed With Phenylalanine And Amp
Length = 327
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 212 GISLPSGHLHPLMKVRAEFRQIFLDMGFTEMPTNNFVESSFWNFDALFQPQQHPARDAHD 271
G + +G LHP+ + F ++GFT + T +E + NFDAL P HPAR HD
Sbjct: 98 GRRIENGGLHPVTRTIDRIESFFGELGFT-VATGPEIEDDYHNFDALNIPGHHPARADHD 156
Query: 272 TFFVTDPKTSETE 284
TF+ + T+
Sbjct: 157 TFWFDTTRLLRTQ 169
>pdb|2DU7|A Chain A, Crystal Structure Of Methanococcus Jannacshii
O-Phosphoseryl-Trna Synthetase
pdb|2DU7|B Chain B, Crystal Structure Of Methanococcus Jannacshii
O-Phosphoseryl-Trna Synthetase
pdb|2DU7|C Chain C, Crystal Structure Of Methanococcus Jannacshii
O-Phosphoseryl-Trna Synthetase
pdb|2DU7|D Chain D, Crystal Structure Of Methanococcus Jannacshii
O-Phosphoseryl-Trna Synthetase
Length = 549
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 218 GHLHPLMKVRAEFRQIFLDMGFTEM 242
G HP+M+ RQ +L MGF EM
Sbjct: 54 GKPHPVMETIERLRQAYLRMGFEEM 78
>pdb|3CMQ|A Chain A, Crystal Structure Of Human Mitochondrial Phenylalanine
Trna Synthetase
pdb|3HFV|A Chain A, Crystal Structure Of Human Mitochondrial Phenylalanyl-Trna
Synthetase Complexed With M-Tyrosine
pdb|3TEG|A Chain A, Bacterial And Eukaryotic Phenylalanyl-Trna Synthetases
Catalyze Misaminoacylation Of Trnaphe With
3,4-Dihydroxy-L-Phenylalanine (L- Dopa)
pdb|3TUP|A Chain A, Crystal Structure Of Human Mitochondrial Phers Complexed
With Trnaphe In The Active Open State
Length = 415
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Query: 211 MGISLPSGHLHPLMKVRAEFRQIFLDMGFTEMPTNNF--------VESSFWNFDALFQPQ 262
+G +L + HPL ++ ++ F T F V +++ NFD+L P
Sbjct: 38 VGRNLHNQQHHPLWLIKERVKEHFYKQYVGRFGTPLFSVYDNLSPVVTTWQNFDSLLIPA 97
Query: 263 QHPARDAHDTFFV 275
HP+R D +++
Sbjct: 98 DHPSRKKGDNYYL 110
>pdb|4GUF|A Chain A, 1.5 Angstrom Crystal Structure Of The Salmonella Enterica
3- Dehydroquinate Dehydratase (arod) E86a Mutant
pdb|4GUF|B Chain B, 1.5 Angstrom Crystal Structure Of The Salmonella Enterica
3- Dehydroquinate Dehydratase (arod) E86a Mutant
pdb|4GUG|A Chain A, 1.62 Angstrom Crystal Structure Of The Salmonella Enterica
3- Dehydroquinate Dehydratase (arod) E86a Mutant In
Complex With Dehydroshikimate (crystal Form #1)
pdb|4GUG|B Chain B, 1.62 Angstrom Crystal Structure Of The Salmonella Enterica
3- Dehydroquinate Dehydratase (arod) E86a Mutant In
Complex With Dehydroshikimate (crystal Form #1)
pdb|4GUH|A Chain A, 1.95 Angstrom Crystal Structure Of The Salmonella Enterica
3- Dehydroquinate Dehydratase (arod) E86a Mutant In
Complex With Dehydroshikimate (crystal Form #2)
pdb|4GUH|B Chain B, 1.95 Angstrom Crystal Structure Of The Salmonella Enterica
3- Dehydroquinate Dehydratase (arod) E86a Mutant In
Complex With Dehydroshikimate (crystal Form #2)
Length = 276
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 51/104 (49%), Gaps = 16/104 (15%)
Query: 73 SHEVLVFNNVPSEGIGQKELLATFPNAKVGFSKAMAKG-WISLDKAT--GKVLRKVD--- 126
+ VL E I K LL TF +AK G +A+ G +I L++A ++ +D
Sbjct: 82 AESVLEAAGAIREIITDKPLLFTFRSAKAGGEQALTTGQYIDLNRAAVDSGLVDMIDLEL 141
Query: 127 -SVTDELQAHLK---------LIANNEYDKVPEANKVDYKKRKL 160
+ DE++A + +++N+++ K P A ++ + RK+
Sbjct: 142 FTGDDEVKATVGYAHQHNVAVIMSNHDFHKTPAAEEIVQRLRKM 185
>pdb|3NNT|A Chain A, Crystal Structure Of K170m Mutant Of Type I
3-Dehydroquinate Dehydratase (Arod) From Salmonella
Typhimurium Lt2 In Non-Covalent Complex With
Dehydroquinate.
pdb|3NNT|B Chain B, Crystal Structure Of K170m Mutant Of Type I
3-Dehydroquinate Dehydratase (Arod) From Salmonella
Typhimurium Lt2 In Non-Covalent Complex With
Dehydroquinate.
pdb|4IUO|A Chain A, 1.8 Angstrom Crystal Structure Of The Salmonella Enterica
3- Dehydroquinate Dehydratase (arod) K170m Mutant In
Complex With Quinate
pdb|4IUO|B Chain B, 1.8 Angstrom Crystal Structure Of The Salmonella Enterica
3- Dehydroquinate Dehydratase (arod) K170m Mutant In
Complex With Quinate
Length = 276
Score = 27.3 bits (59), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 51/104 (49%), Gaps = 16/104 (15%)
Query: 73 SHEVLVFNNVPSEGIGQKELLATFPNAKVGFSKAMAKG-WISLDKAT--GKVLRKVD--- 126
+ VL E I K LL TF +AK G +A+ G +I L++A ++ +D
Sbjct: 82 AESVLEAAGAIREIITDKPLLFTFRSAKEGGEQALTTGQYIDLNRAAVDSGLVDMIDLEL 141
Query: 127 -SVTDELQAHLK---------LIANNEYDKVPEANKVDYKKRKL 160
+ DE++A + +++N+++ K P A ++ + RK+
Sbjct: 142 FTGDDEVKATVGYAHQHNVAVIMSNHDFHKTPAAEEIVQRLRKM 185
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,106,003
Number of Sequences: 62578
Number of extensions: 386662
Number of successful extensions: 918
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 905
Number of HSP's gapped (non-prelim): 17
length of query: 292
length of database: 14,973,337
effective HSP length: 98
effective length of query: 194
effective length of database: 8,840,693
effective search space: 1715094442
effective search space used: 1715094442
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)