Query psy10346
Match_columns 292
No_of_seqs 159 out of 1241
Neff 5.7
Searched_HMMs 29240
Date Fri Aug 16 15:37:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10346.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10346hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l4g_A Phenylalanyl-tRNA synth 100.0 5.5E-69 1.9E-73 534.0 8.6 279 1-281 1-285 (508)
2 3cmq_A Phenylalanyl-tRNA synth 99.8 9E-22 3.1E-26 191.8 3.1 101 176-278 4-113 (415)
3 2du7_A O-phosphoseryl-tRNA syn 99.8 8.8E-21 3E-25 189.6 1.6 91 182-279 15-111 (549)
4 2odr_B Phosphoseryl-tRNA synth 99.8 3.8E-21 1.3E-25 194.0 -2.0 91 182-279 23-119 (648)
5 2odr_D Phosphoseryl-tRNA synth 99.8 4.6E-21 1.6E-25 194.0 -4.6 91 182-279 23-119 (685)
6 2odr_A Phosphoseryl-tRNA synth 99.8 4.2E-21 1.4E-25 194.0 -5.4 91 182-279 23-119 (665)
7 2odr_C Phosphoseryl-tRNA synth 99.8 5.1E-21 1.7E-25 194.1 -4.8 91 182-279 23-119 (701)
8 3pco_A Phenylalanyl-tRNA synth 99.7 2.3E-18 8E-23 163.1 4.1 72 205-277 91-162 (327)
9 1b7y_A Phers, protein (phenyla 99.7 2.3E-17 7.7E-22 157.7 6.8 74 206-280 86-159 (350)
10 2rhq_A Phenylalanyl-tRNA synth 99.4 3.5E-13 1.2E-17 125.4 6.1 72 204-276 36-107 (294)
11 2du3_A O-phosphoseryl-tRNA syn 99.1 1.2E-12 4E-17 130.9 -3.7 88 183-277 6-99 (534)
12 2nnn_A Probable transcriptiona 97.7 9.8E-05 3.3E-09 58.6 8.2 73 4-77 38-114 (140)
13 1tbx_A ORF F-93, hypothetical 97.7 0.00012 4E-09 56.0 8.1 71 4-75 8-83 (99)
14 3bdd_A Regulatory protein MARR 97.7 0.00013 4.3E-09 58.0 8.4 88 4-93 31-124 (142)
15 3bpv_A Transcriptional regulat 97.7 0.00016 5.6E-09 57.2 8.6 88 4-93 29-121 (138)
16 3hsr_A HTH-type transcriptiona 97.7 9.9E-05 3.4E-09 59.4 7.4 88 4-94 36-127 (140)
17 2gxg_A 146AA long hypothetical 97.6 0.00022 7.7E-09 57.0 8.6 88 4-94 37-129 (146)
18 2fbh_A Transcriptional regulat 97.6 0.00017 5.7E-09 57.6 7.5 89 4-94 37-131 (146)
19 2pex_A Transcriptional regulat 97.6 0.00024 8.3E-09 57.6 8.6 88 4-94 47-138 (153)
20 1ub9_A Hypothetical protein PH 97.6 7.8E-05 2.7E-09 56.3 5.2 70 3-73 15-88 (100)
21 3k0l_A Repressor protein; heli 97.6 0.0002 6.7E-09 59.0 8.1 89 4-94 46-139 (162)
22 3oop_A LIN2960 protein; protei 97.6 0.00011 3.7E-09 59.0 6.3 89 4-94 37-130 (143)
23 2bv6_A MGRA, HTH-type transcri 97.6 0.00014 4.7E-09 58.2 6.7 87 4-94 37-128 (142)
24 3bro_A Transcriptional regulat 97.6 0.00018 6E-09 57.3 7.4 89 4-94 34-129 (141)
25 3b73_A PHIH1 repressor-like pr 97.6 8.1E-05 2.8E-09 59.9 5.3 65 3-70 12-78 (111)
26 1xmk_A Double-stranded RNA-spe 97.6 7.2E-05 2.5E-09 56.9 4.6 65 4-69 11-76 (79)
27 3l4g_B Phenylalanyl-tRNA synth 97.6 7.8E-05 2.7E-09 75.3 6.2 61 215-281 385-445 (589)
28 2fbi_A Probable transcriptiona 97.5 0.00018 6.1E-09 57.1 7.0 72 4-76 36-111 (142)
29 2a61_A Transcriptional regulat 97.5 0.00023 7.9E-09 56.8 7.6 72 4-76 33-108 (145)
30 1jgs_A Multiple antibiotic res 97.5 0.00015 5E-09 57.6 6.3 73 4-77 34-110 (138)
31 2rdp_A Putative transcriptiona 97.5 0.00018 6.3E-09 57.9 6.8 73 4-77 42-118 (150)
32 2eth_A Transcriptional regulat 97.5 0.00022 7.5E-09 58.1 7.2 73 4-77 44-120 (154)
33 3eco_A MEPR; mutlidrug efflux 97.5 0.00022 7.4E-09 56.8 7.1 73 4-77 31-109 (139)
34 3cjn_A Transcriptional regulat 97.5 0.00023 7.9E-09 58.3 7.2 89 4-94 52-145 (162)
35 1lj9_A Transcriptional regulat 97.5 0.00022 7.5E-09 57.0 7.0 89 4-94 29-122 (144)
36 3nrv_A Putative transcriptiona 97.5 0.00014 4.9E-09 58.5 5.8 73 4-77 40-116 (148)
37 1bja_A Transcription regulator 97.5 0.00017 5.7E-09 56.8 5.8 69 4-76 16-85 (95)
38 3kp7_A Transcriptional regulat 97.5 0.00013 4.3E-09 59.3 5.4 88 4-94 38-132 (151)
39 3tgn_A ADC operon repressor AD 97.5 0.00018 6.1E-09 57.7 6.2 69 3-73 37-109 (146)
40 3s2w_A Transcriptional regulat 97.5 0.00016 5.6E-09 59.2 6.1 73 4-77 50-126 (159)
41 2hr3_A Probable transcriptiona 97.5 0.00032 1.1E-08 56.2 7.5 73 4-77 35-112 (147)
42 3f3x_A Transcriptional regulat 97.4 0.00032 1.1E-08 56.3 7.3 72 4-77 37-112 (144)
43 3bja_A Transcriptional regulat 97.4 0.00019 6.3E-09 56.8 5.7 73 4-77 33-109 (139)
44 2x4h_A Hypothetical protein SS 97.4 0.00024 8.1E-09 57.1 6.2 73 4-80 13-89 (139)
45 2fa5_A Transcriptional regulat 97.4 0.0002 6.7E-09 58.6 5.8 73 4-77 49-125 (162)
46 3g3z_A NMB1585, transcriptiona 97.4 0.00012 3.9E-09 59.0 4.3 73 4-77 31-107 (145)
47 2qww_A Transcriptional regulat 97.4 0.00015 5.3E-09 58.7 5.1 71 4-75 41-117 (154)
48 1z91_A Organic hydroperoxide r 97.4 0.00023 8E-09 57.0 6.1 87 4-94 40-131 (147)
49 3bj6_A Transcriptional regulat 97.4 0.00021 7E-09 57.7 5.7 73 4-77 40-116 (152)
50 3e6m_A MARR family transcripti 97.4 0.00018 6.2E-09 59.2 5.4 89 4-94 53-146 (161)
51 3ech_A MEXR, multidrug resista 97.4 0.00019 6.5E-09 57.6 5.4 73 4-77 37-113 (142)
52 1r7j_A Conserved hypothetical 97.4 0.00047 1.6E-08 53.5 7.2 60 4-69 8-67 (95)
53 3cdh_A Transcriptional regulat 97.4 0.00035 1.2E-08 56.7 6.7 72 4-76 43-118 (155)
54 4hbl_A Transcriptional regulat 97.3 0.00019 6.6E-09 58.3 4.9 72 4-76 41-116 (149)
55 2pg4_A Uncharacterized protein 97.3 0.00035 1.2E-08 53.2 6.0 70 7-77 18-91 (95)
56 3nqo_A MARR-family transcripti 97.3 0.0005 1.7E-08 58.5 7.6 89 4-94 41-136 (189)
57 2xvc_A ESCRT-III, SSO0910; cel 97.3 0.00025 8.5E-09 50.7 4.6 47 5-52 11-58 (59)
58 3deu_A Transcriptional regulat 97.3 0.00035 1.2E-08 58.2 6.3 73 4-77 53-130 (166)
59 3fm5_A Transcriptional regulat 97.3 0.00037 1.3E-08 56.4 6.2 89 4-94 39-133 (150)
60 3jw4_A Transcriptional regulat 97.3 0.00013 4.5E-09 59.0 3.3 89 4-94 41-136 (148)
61 1s3j_A YUSO protein; structura 97.3 0.00032 1.1E-08 56.8 5.5 73 4-77 37-113 (155)
62 2qvo_A Uncharacterized protein 97.2 0.00057 1.9E-08 52.1 6.3 69 5-74 13-86 (95)
63 2hzt_A Putative HTH-type trans 97.2 0.00079 2.7E-08 52.6 7.1 62 6-69 16-82 (107)
64 3cuo_A Uncharacterized HTH-typ 97.2 0.00075 2.6E-08 50.8 6.5 67 3-70 23-90 (99)
65 1z7u_A Hypothetical protein EF 97.2 0.0012 4.2E-08 51.9 8.0 63 5-69 23-90 (112)
66 3df8_A Possible HXLR family tr 97.2 0.0011 3.6E-08 52.5 7.5 62 6-69 29-93 (111)
67 2nyx_A Probable transcriptiona 97.2 0.00045 1.6E-08 57.3 5.5 72 4-76 45-120 (168)
68 4b8x_A SCO5413, possible MARR- 97.2 0.0011 3.7E-08 54.3 7.6 73 4-77 35-113 (147)
69 1sfx_A Conserved hypothetical 97.2 0.0013 4.5E-08 49.6 7.6 72 3-75 19-93 (109)
70 3boq_A Transcriptional regulat 97.2 0.00052 1.8E-08 55.9 5.6 89 4-94 47-141 (160)
71 4aik_A Transcriptional regulat 97.1 0.0014 4.7E-08 54.0 7.9 89 4-94 31-125 (151)
72 3u2r_A Regulatory protein MARR 97.1 0.001 3.5E-08 55.0 6.9 72 4-76 46-123 (168)
73 2oqg_A Possible transcriptiona 97.1 0.0019 6.4E-08 50.0 8.0 68 2-71 19-87 (114)
74 1y0u_A Arsenical resistance op 97.0 0.00072 2.4E-08 51.6 5.0 59 3-67 30-88 (96)
75 2frh_A SARA, staphylococcal ac 97.0 0.00029 1E-08 56.3 2.8 71 4-75 37-113 (127)
76 1okr_A MECI, methicillin resis 97.0 0.00083 2.9E-08 52.8 5.3 68 4-72 10-83 (123)
77 2fsw_A PG_0823 protein; alpha- 97.0 0.0015 5.2E-08 50.9 6.7 61 7-69 28-93 (107)
78 1yyv_A Putative transcriptiona 96.9 0.0022 7.4E-08 52.3 7.3 61 7-69 38-103 (131)
79 4esf_A PADR-like transcription 96.9 0.0032 1.1E-07 50.5 8.1 68 4-73 11-90 (117)
80 3hrs_A Metalloregulator SCAR; 96.9 0.0013 4.5E-08 57.7 6.0 84 7-93 9-94 (214)
81 3l7w_A Putative uncharacterize 96.9 0.0037 1.2E-07 49.1 7.8 72 4-77 9-89 (108)
82 3f8b_A Transcriptional regulat 96.8 0.0042 1.4E-07 49.5 8.1 72 4-77 12-97 (116)
83 2fxa_A Protease production reg 96.8 0.0016 5.3E-08 56.7 5.9 68 4-72 48-119 (207)
84 3hhh_A Transcriptional regulat 96.8 0.0041 1.4E-07 49.9 7.9 70 4-75 13-94 (116)
85 4fx0_A Probable transcriptiona 96.8 0.001 3.6E-08 54.6 4.4 73 4-77 33-113 (148)
86 4a5n_A Uncharacterized HTH-typ 96.7 0.0039 1.3E-07 51.2 7.5 61 7-69 29-94 (131)
87 1xma_A Predicted transcription 96.7 0.0043 1.5E-07 51.6 7.7 71 4-76 41-125 (145)
88 3qtc_A Pyrrolysyl-tRNA synthet 96.7 0.001 3.4E-08 61.1 4.1 58 216-277 72-129 (290)
89 1on2_A Transcriptional regulat 96.7 0.0022 7.6E-08 51.6 5.7 63 9-74 13-75 (142)
90 2wte_A CSA3; antiviral protein 96.7 0.0018 6.3E-08 58.4 5.7 64 4-69 152-215 (244)
91 2rhq_B Phenylalanyl-tRNA synth 96.7 0.0031 1.1E-07 65.8 8.0 59 214-281 486-544 (795)
92 2esh_A Conserved hypothetical 96.7 0.003 1E-07 50.3 6.1 70 4-75 13-96 (118)
93 3ri2_A Transcriptional regulat 96.6 0.006 2E-07 49.5 7.8 71 4-77 21-101 (123)
94 3jth_A Transcription activator 96.6 0.0033 1.1E-07 47.8 5.7 66 2-69 21-87 (98)
95 3elk_A Putative transcriptiona 96.6 0.0037 1.3E-07 50.1 6.3 72 4-77 14-97 (117)
96 2f2e_A PA1607; transcription f 96.6 0.0045 1.5E-07 51.2 6.9 61 7-69 27-90 (146)
97 4esb_A Transcriptional regulat 96.6 0.0044 1.5E-07 49.5 6.6 72 4-77 9-92 (115)
98 2fbk_A Transcriptional regulat 96.6 0.00061 2.1E-08 57.2 1.5 73 4-77 69-148 (181)
99 3f6o_A Probable transcriptiona 96.5 0.0044 1.5E-07 49.0 6.3 74 2-77 16-90 (118)
100 2obp_A Putative DNA-binding pr 96.5 0.0035 1.2E-07 49.2 5.5 70 4-74 16-93 (96)
101 1yg2_A Gene activator APHA; vi 96.5 0.0041 1.4E-07 52.9 6.1 65 5-71 3-81 (179)
102 1r1u_A CZRA, repressor protein 96.4 0.012 3.9E-07 45.6 8.0 64 2-67 24-88 (106)
103 1qbj_A Protein (double-strande 96.4 0.0045 1.6E-07 46.9 5.3 62 3-65 9-73 (81)
104 3f6v_A Possible transcriptiona 96.4 0.0061 2.1E-07 50.9 6.3 68 2-71 56-124 (151)
105 1u2w_A CADC repressor, cadmium 96.3 0.0051 1.8E-07 49.1 5.4 66 3-69 41-107 (122)
106 2jsc_A Transcriptional regulat 96.3 0.0092 3.1E-07 47.3 6.8 64 2-67 19-83 (118)
107 2p8t_A Hypothetical protein PH 96.3 0.007 2.4E-07 53.4 6.7 50 16-69 28-77 (200)
108 1sd4_A Penicillinase repressor 96.3 0.016 5.4E-07 45.5 8.1 91 3-94 9-115 (126)
109 1qgp_A Protein (double strande 96.3 0.0039 1.3E-07 46.6 4.3 58 4-62 14-74 (77)
110 2dql_A PEX protein; circadian 96.3 0.017 5.9E-07 46.0 8.3 67 5-73 22-103 (115)
111 2h09_A Transcriptional regulat 96.3 0.0065 2.2E-07 49.6 6.0 63 6-71 42-104 (155)
112 2kko_A Possible transcriptiona 96.2 0.0055 1.9E-07 47.8 5.0 64 4-69 25-89 (108)
113 2heo_A Z-DNA binding protein 1 96.1 0.0066 2.3E-07 43.9 4.7 55 5-62 11-66 (67)
114 3pqk_A Biofilm growth-associat 96.0 0.0087 3E-07 45.8 5.3 66 2-69 21-87 (102)
115 2qq9_A Diphtheria toxin repres 96.0 0.0075 2.6E-07 53.1 5.3 87 4-93 6-98 (226)
116 2jt1_A PEFI protein; solution 95.9 0.0065 2.2E-07 45.7 4.0 51 1-52 1-57 (77)
117 2qlz_A Transcription factor PF 95.8 0.016 5.4E-07 52.0 6.8 62 2-65 10-78 (232)
118 1p4x_A Staphylococcal accessor 95.8 0.012 4E-07 53.1 5.7 72 4-76 158-235 (250)
119 1r1t_A Transcriptional repress 95.7 0.026 8.8E-07 45.2 7.0 63 3-67 45-108 (122)
120 1oyi_A Double-stranded RNA-bin 95.7 0.0098 3.4E-07 45.4 4.2 60 4-65 17-76 (82)
121 3dsq_A Pyrrolysyl-tRNA synthet 95.5 0.012 4E-07 54.3 4.9 56 216-276 66-122 (288)
122 2dk5_A DNA-directed RNA polyme 95.5 0.017 5.7E-07 44.6 4.9 58 4-62 20-83 (91)
123 1hsj_A Fusion protein consisti 95.4 0.0087 3E-07 57.3 3.8 67 4-71 404-476 (487)
124 2htj_A P fimbrial regulatory p 95.4 0.023 8E-07 41.8 5.3 58 6-64 2-62 (81)
125 1fx7_A Iron-dependent represso 95.4 0.012 4E-07 51.9 4.2 72 4-79 6-82 (230)
126 3cta_A Riboflavin kinase; stru 95.2 0.047 1.6E-06 47.8 7.4 72 4-76 7-85 (230)
127 2lkp_A Transcriptional regulat 95.2 0.03 1E-06 43.7 5.6 59 3-63 31-90 (119)
128 3u1d_A Uncharacterized protein 95.2 0.061 2.1E-06 45.4 7.7 68 3-71 28-107 (151)
129 2co5_A Viral protein F93; vira 95.0 0.026 8.8E-07 44.1 4.7 66 6-72 11-84 (99)
130 3l9f_A Putative uncharacterize 95.0 0.03 1E-06 49.2 5.5 63 6-70 38-114 (204)
131 1ku9_A Hypothetical protein MJ 94.9 0.02 7E-07 45.2 3.9 66 4-70 26-94 (152)
132 2d1h_A ST1889, 109AA long hypo 94.9 0.092 3.1E-06 39.3 7.4 64 5-69 22-93 (109)
133 2xzm_7 Plectin/S10 domain cont 94.9 0.021 7.1E-07 48.5 4.0 47 29-76 36-85 (162)
134 2e1n_A PEX, period extender; c 94.9 0.04 1.4E-06 45.5 5.7 65 6-72 36-114 (138)
135 2lnb_A Z-DNA-binding protein 1 94.8 0.048 1.6E-06 41.2 5.4 56 4-62 19-75 (80)
136 1xn7_A Hypothetical protein YH 94.7 0.044 1.5E-06 41.1 4.9 44 7-51 5-48 (78)
137 2g9w_A Conserved hypothetical 94.7 0.048 1.6E-06 44.0 5.6 63 3-66 8-78 (138)
138 2cfx_A HTH-type transcriptiona 94.6 0.062 2.1E-06 43.6 6.1 48 3-51 4-51 (144)
139 3u5c_K 40S ribosomal protein S 94.5 0.018 6.1E-07 45.8 2.6 42 29-71 36-78 (105)
140 2p4w_A Transcriptional regulat 94.5 0.031 1.1E-06 48.9 4.3 64 3-68 14-83 (202)
141 1b7y_B Phers, protein (phenyla 94.3 0.043 1.5E-06 57.3 5.5 54 219-282 487-540 (785)
142 1p6r_A Penicillinase repressor 94.2 0.088 3E-06 38.5 5.7 50 3-53 8-61 (82)
143 4a6d_A Hydroxyindole O-methylt 94.2 0.13 4.5E-06 47.8 8.2 72 4-76 28-101 (353)
144 2o0m_A Transcriptional regulat 94.0 0.0097 3.3E-07 55.7 0.0 62 4-69 20-81 (345)
145 2dbb_A Putative HTH-type trans 94.0 0.084 2.9E-06 42.9 5.7 47 3-50 8-54 (151)
146 2k02_A Ferrous iron transport 94.0 0.048 1.7E-06 41.9 3.9 46 7-53 5-50 (87)
147 2zfw_A PEX; five alpha-helices 93.9 0.023 7.8E-07 47.6 2.2 65 7-73 47-125 (148)
148 1p4x_A Staphylococcal accessor 93.9 0.032 1.1E-06 50.3 3.2 73 4-77 34-112 (250)
149 3r0a_A Putative transcriptiona 93.8 0.1 3.4E-06 41.6 5.7 49 4-53 26-76 (123)
150 2w25_A Probable transcriptiona 93.8 0.097 3.3E-06 42.6 5.7 48 3-51 6-53 (150)
151 2cg4_A Regulatory protein ASNC 93.7 0.1 3.6E-06 42.5 5.7 48 3-51 7-54 (152)
152 1sfu_A 34L protein; protein/Z- 93.7 0.11 3.9E-06 38.9 5.4 57 5-62 13-72 (75)
153 2zkz_A Transcriptional repress 93.5 0.13 4.3E-06 39.3 5.5 66 2-69 25-91 (99)
154 3lmm_A Uncharacterized protein 93.4 0.11 3.6E-06 52.4 6.4 107 5-115 431-563 (583)
155 2pn6_A ST1022, 150AA long hypo 93.4 0.093 3.2E-06 42.5 4.9 47 4-51 3-49 (150)
156 2p5v_A Transcriptional regulat 93.3 0.13 4.3E-06 42.5 5.7 48 3-51 9-56 (162)
157 2fu4_A Ferric uptake regulatio 93.2 0.26 9E-06 35.9 6.7 57 4-61 17-82 (83)
158 3i4p_A Transcriptional regulat 93.1 0.1 3.6E-06 43.3 5.0 46 4-50 3-48 (162)
159 2ia0_A Putative HTH-type trans 93.1 0.14 4.7E-06 43.2 5.7 47 3-50 16-62 (171)
160 2vxz_A Pyrsv_GP04; viral prote 92.9 0.18 6E-06 42.8 6.0 62 5-70 12-74 (165)
161 1i1g_A Transcriptional regulat 92.9 0.098 3.4E-06 41.8 4.4 47 3-50 3-49 (141)
162 2cyy_A Putative HTH-type trans 92.5 0.12 4.1E-06 42.1 4.4 48 3-51 6-53 (151)
163 2v79_A DNA replication protein 92.5 0.2 7E-06 41.0 5.7 48 17-65 50-103 (135)
164 1nnh_A Asparaginyl-tRNA synthe 92.3 0.095 3.3E-06 48.2 4.0 42 223-272 18-64 (294)
165 1q1h_A TFE, transcription fact 92.2 0.13 4.5E-06 39.5 4.0 47 5-52 19-66 (110)
166 2e1c_A Putative HTH-type trans 91.9 0.16 5.4E-06 42.9 4.6 48 3-51 26-73 (171)
167 1x54_A Asparaginyl-tRNA synthe 91.9 0.084 2.9E-06 51.3 3.2 49 218-277 133-181 (434)
168 1x19_A CRTF-related protein; m 91.8 0.32 1.1E-05 44.7 7.0 66 4-74 51-116 (359)
169 3mcz_A O-methyltransferase; ad 91.6 0.29 9.9E-06 44.7 6.4 66 5-76 45-110 (352)
170 2r3s_A Uncharacterized protein 91.4 0.25 8.5E-06 44.5 5.6 67 4-75 26-92 (335)
171 4g6q_A Putative uncharacterize 90.5 0.69 2.4E-05 39.3 7.3 65 1-67 20-91 (182)
172 2y75_A HTH-type transcriptiona 89.9 0.34 1.2E-05 38.4 4.6 60 5-65 10-72 (129)
173 2vn2_A DNAD, chromosome replic 89.7 0.44 1.5E-05 38.2 5.1 51 4-55 32-87 (128)
174 3eyi_A Z-DNA-binding protein 1 89.5 0.18 6.1E-06 37.3 2.3 49 5-54 11-60 (72)
175 1uly_A Hypothetical protein PH 89.3 0.47 1.6E-05 40.8 5.3 48 3-52 19-66 (192)
176 3dp7_A SAM-dependent methyltra 89.1 0.44 1.5E-05 44.2 5.3 67 5-76 36-103 (363)
177 1bm9_A RTP, TER, replication t 88.9 0.53 1.8E-05 38.3 5.0 66 5-71 19-102 (122)
178 2yu3_A DNA-directed RNA polyme 88.9 0.48 1.6E-05 36.9 4.5 50 3-53 36-87 (95)
179 1mkm_A ICLR transcriptional re 88.8 0.52 1.8E-05 41.6 5.3 58 6-66 10-68 (249)
180 2k4b_A Transcriptional regulat 88.2 0.27 9.2E-06 38.2 2.7 49 4-53 35-87 (99)
181 1wyd_A Hypothetical aspartyl-t 88.1 0.36 1.2E-05 46.8 4.0 47 219-276 133-179 (429)
182 2g7u_A Transcriptional regulat 87.7 1.4 4.6E-05 39.1 7.4 70 6-79 16-86 (257)
183 1n9w_A Aspartyl-tRNA synthetas 87.5 0.27 9.2E-06 47.6 2.8 47 220-277 125-171 (422)
184 3p9c_A Caffeic acid O-methyltr 87.3 1.1 3.6E-05 41.7 6.7 70 4-74 40-122 (364)
185 2xrn_A HTH-type transcriptiona 86.8 0.83 2.8E-05 40.2 5.4 62 6-69 8-70 (241)
186 2rkh_A Putative APHA-like tran 86.4 0.094 3.2E-06 45.2 -1.0 66 3-70 12-90 (180)
187 3k2z_A LEXA repressor; winged 85.8 0.68 2.3E-05 39.4 4.2 60 3-63 4-68 (196)
188 2ijl_A AGR_C_4647P, molybdenum 85.7 1.1 3.9E-05 36.6 5.3 62 6-69 28-93 (135)
189 2hgc_A YJCQ protein; SR346, st 85.1 0.55 1.9E-05 37.0 3.0 75 4-83 5-87 (102)
190 2o0y_A Transcriptional regulat 85.1 0.8 2.7E-05 40.7 4.4 58 7-67 26-84 (260)
191 2b0l_A GTP-sensing transcripti 85.1 0.66 2.3E-05 35.9 3.4 47 6-53 30-77 (102)
192 1tw3_A COMT, carminomycin 4-O- 85.0 1.3 4.6E-05 40.3 6.0 66 4-74 39-104 (360)
193 3i53_A O-methyltransferase; CO 85.0 0.9 3.1E-05 41.1 4.8 65 4-72 25-89 (332)
194 1bia_A BIRA bifunctional prote 85.0 1.1 3.7E-05 41.4 5.4 61 1-63 1-62 (321)
195 3ig2_A Phenylalanyl-tRNA synth 85.0 0.8 2.7E-05 39.8 4.3 50 223-280 6-55 (213)
196 3l09_A Putative transcriptiona 84.3 2.8 9.5E-05 38.2 7.7 62 16-80 40-105 (266)
197 1zg3_A Isoflavanone 4'-O-methy 84.2 1.7 5.9E-05 39.8 6.4 69 4-74 30-110 (358)
198 1fp1_D Isoliquiritigenin 2'-O- 84.2 0.97 3.3E-05 41.8 4.7 69 4-74 44-128 (372)
199 3lst_A CALO1 methyltransferase 84.0 0.81 2.8E-05 41.9 4.1 62 5-71 43-104 (348)
200 2ip2_A Probable phenazine-spec 83.6 1.3 4.5E-05 39.9 5.3 65 4-74 28-92 (334)
201 1qzz_A RDMB, aclacinomycin-10- 83.1 0.99 3.4E-05 41.3 4.3 68 4-74 36-103 (374)
202 1stz_A Heat-inducible transcri 82.9 1.8 6.1E-05 40.5 6.0 65 2-68 15-86 (338)
203 3rkx_A Biotin-[acetyl-COA-carb 81.4 1.6 5.5E-05 40.5 5.1 57 5-63 4-62 (323)
204 2gqq_A Leucine-responsive regu 81.4 0.35 1.2E-05 39.9 0.5 48 3-51 12-59 (163)
205 1ylf_A RRF2 family protein; st 81.2 1.3 4.5E-05 36.1 3.9 58 6-65 16-75 (149)
206 2l02_A Uncharacterized protein 81.2 3.7 0.00013 31.1 6.0 50 8-58 12-61 (82)
207 3b02_A Transcriptional regulat 81.1 2 7E-05 35.2 5.1 54 19-75 140-193 (195)
208 3ica_A Phenylalanyl-tRNA synth 80.5 1.4 4.9E-05 38.2 4.1 51 223-281 6-56 (213)
209 3szp_A Transcriptional regulat 80.4 1.7 5.9E-05 36.8 4.5 61 7-70 6-66 (291)
210 1fp2_A Isoflavone O-methyltran 79.9 1.6 5.4E-05 39.9 4.4 69 4-74 36-108 (352)
211 2ia2_A Putative transcriptiona 79.8 1.6 5.5E-05 38.9 4.3 54 7-64 24-78 (265)
212 3fxq_A LYSR type regulator of 79.5 1.6 5.5E-05 37.9 4.1 63 5-70 5-67 (305)
213 1v4r_A Transcriptional repress 79.4 0.48 1.7E-05 36.0 0.6 48 6-54 21-70 (102)
214 2esn_A Probable transcriptiona 79.1 1.9 6.6E-05 37.3 4.5 65 6-73 14-78 (310)
215 2l01_A Uncharacterized protein 78.4 4.2 0.00014 30.5 5.5 51 8-59 14-65 (77)
216 3fzv_A Probable transcriptiona 78.4 1.3 4.3E-05 38.3 3.1 64 5-71 7-71 (306)
217 1j5y_A Transcriptional regulat 77.9 2.5 8.6E-05 35.6 4.8 57 4-64 21-79 (187)
218 1b4a_A Arginine repressor; hel 77.4 4.3 0.00015 33.7 5.9 72 3-83 4-81 (149)
219 3r4k_A Transcriptional regulat 77.4 1.2 4.1E-05 39.7 2.7 57 6-64 8-65 (260)
220 3hhg_A Transcriptional regulat 77.1 1.8 6.1E-05 37.3 3.7 64 5-71 6-69 (306)
221 3reo_A (ISO)eugenol O-methyltr 76.8 5 0.00017 37.1 6.9 70 4-74 41-124 (368)
222 3mq0_A Transcriptional repress 76.5 1.5 5.2E-05 39.4 3.1 55 7-64 33-88 (275)
223 2ek5_A Predicted transcription 75.7 4.9 0.00017 32.1 5.7 39 20-59 30-68 (129)
224 3t8r_A Staphylococcus aureus C 75.0 3 0.0001 33.9 4.3 60 4-64 11-73 (143)
225 1z6r_A MLC protein; transcript 74.8 3.9 0.00013 38.2 5.6 46 6-52 18-63 (406)
226 4ev0_A Transcription regulator 74.7 5.5 0.00019 32.7 6.0 52 19-73 164-215 (216)
227 2di3_A Bacterial regulatory pr 74.4 3.5 0.00012 35.7 4.8 38 16-54 25-65 (239)
228 3isp_A HTH-type transcriptiona 74.1 1.9 6.6E-05 37.3 3.1 63 6-72 10-72 (303)
229 1ixc_A CBNR, LYSR-type regulat 73.7 3.2 0.00011 35.4 4.4 62 6-70 5-66 (294)
230 3lwf_A LIN1550 protein, putati 73.5 4.9 0.00017 33.5 5.3 58 5-63 28-88 (159)
231 2qm3_A Predicted methyltransfe 72.6 2.2 7.5E-05 39.7 3.3 61 6-73 45-105 (373)
232 2zcw_A TTHA1359, transcription 71.6 6.9 0.00023 32.0 5.8 50 19-71 147-196 (202)
233 3gwz_A MMCR; methyltransferase 71.5 1.7 5.8E-05 40.2 2.2 65 5-74 59-124 (369)
234 2o03_A Probable zinc uptake re 71.3 5.7 0.00019 31.5 5.0 57 4-61 11-75 (131)
235 1z05_A Transcriptional regulat 71.2 4.8 0.00017 38.0 5.4 47 6-53 41-87 (429)
236 2fe3_A Peroxide operon regulat 71.1 8 0.00027 31.2 6.0 58 4-62 22-87 (145)
237 4a0z_A Transcription factor FA 71.0 5.1 0.00018 34.3 5.0 46 3-49 11-56 (190)
238 3pfi_A Holliday junction ATP-d 70.2 5.5 0.00019 35.6 5.3 71 4-79 263-336 (338)
239 3tqn_A Transcriptional regulat 70.2 5.8 0.0002 30.7 4.7 37 20-57 35-71 (113)
240 4ham_A LMO2241 protein; struct 69.7 4.8 0.00016 32.0 4.3 43 16-59 35-78 (134)
241 1wi9_A Protein C20ORF116 homol 69.1 3.4 0.00012 30.6 2.9 43 7-50 10-52 (72)
242 1mzb_A Ferric uptake regulatio 68.9 7.8 0.00027 30.8 5.4 59 3-62 17-84 (136)
243 3e6c_C CPRK, cyclic nucleotide 68.8 5.5 0.00019 33.9 4.7 54 19-75 178-231 (250)
244 2p5k_A Arginine repressor; DNA 67.9 18 0.0006 24.2 6.4 41 8-52 9-54 (64)
245 3by6_A Predicted transcription 66.1 6.2 0.00021 31.2 4.2 39 20-59 37-75 (126)
246 3k69_A Putative transcription 65.9 3 0.0001 34.7 2.4 60 5-65 13-74 (162)
247 2qlz_A Transcription factor PF 65.4 5.7 0.0002 35.2 4.2 56 6-65 167-222 (232)
248 3c7j_A Transcriptional regulat 64.7 7.8 0.00027 33.8 5.0 44 14-58 45-88 (237)
249 3ryp_A Catabolite gene activat 64.2 8.8 0.0003 31.3 5.0 35 19-54 168-202 (210)
250 1hqc_A RUVB; extended AAA-ATPa 63.7 13 0.00045 32.6 6.4 72 4-79 247-322 (324)
251 2xig_A Ferric uptake regulatio 63.6 12 0.00041 30.4 5.6 58 4-62 27-92 (150)
252 2fmy_A COOA, carbon monoxide o 63.3 12 0.0004 30.9 5.7 45 19-66 168-213 (220)
253 2w48_A Sorbitol operon regulat 63.0 14 0.00049 33.4 6.6 40 13-53 16-55 (315)
254 3e97_A Transcriptional regulat 62.3 10 0.00034 31.6 5.0 45 19-66 176-220 (231)
255 2l02_A Uncharacterized protein 61.9 3.7 0.00013 31.1 1.9 44 77-120 12-60 (82)
256 3iwz_A CAP-like, catabolite ac 61.8 10 0.00035 31.4 5.0 35 19-54 188-222 (230)
257 2oz6_A Virulence factor regula 61.8 10 0.00035 30.8 4.9 35 19-54 165-199 (207)
258 2hoe_A N-acetylglucosamine kin 61.4 9.1 0.00031 35.5 5.0 57 7-65 23-86 (380)
259 3eyy_A Putative iron uptake re 61.1 9.5 0.00032 30.8 4.5 58 4-62 19-83 (145)
260 3f8m_A GNTR-family protein tra 61.0 13 0.00046 32.6 5.8 53 4-59 22-75 (248)
261 2l01_A Uncharacterized protein 60.8 6.6 0.00022 29.4 3.1 44 77-120 14-63 (77)
262 2h9b_A HTH-type transcriptiona 60.5 1.8 6.2E-05 37.9 0.0 62 8-72 7-68 (312)
263 3dv8_A Transcriptional regulat 60.2 11 0.00037 30.9 4.9 35 18-53 169-203 (220)
264 3neu_A LIN1836 protein; struct 60.1 13 0.00043 29.3 5.0 41 20-61 39-79 (125)
265 3kfw_X Uncharacterized protein 59.6 8.3 0.00028 34.5 4.2 67 7-79 7-78 (247)
266 2w57_A Ferric uptake regulatio 59.3 12 0.0004 30.5 4.8 58 4-62 17-83 (150)
267 2gau_A Transcriptional regulat 58.0 13 0.00044 30.9 5.0 44 19-65 181-224 (232)
268 3mz1_A Putative transcriptiona 58.0 2.1 7.2E-05 36.3 0.0 62 8-72 4-65 (300)
269 1uth_A LYSR-type regulatory pr 57.1 2.2 7.6E-05 37.4 0.0 50 21-71 31-80 (315)
270 3mwm_A ZUR, putative metal upt 56.9 12 0.00042 30.0 4.5 59 4-63 14-80 (139)
271 1tc3_C Protein (TC3 transposas 56.9 22 0.00075 21.7 4.9 37 7-45 12-48 (51)
272 2h98_A HTH-type transcriptiona 56.5 2.3 7.9E-05 37.5 0.0 62 8-72 7-68 (313)
273 3la7_A Global nitrogen regulat 56.3 13 0.00046 31.4 4.9 35 19-54 194-228 (243)
274 3dkw_A DNR protein; CRP-FNR, H 55.7 12 0.0004 30.9 4.3 35 19-54 179-213 (227)
275 3d0s_A Transcriptional regulat 54.9 15 0.0005 30.4 4.8 34 19-53 178-211 (227)
276 1b9m_A Protein (mode); DNA-bin 53.0 16 0.00054 31.7 4.9 63 5-70 23-90 (265)
277 3kcc_A Catabolite gene activat 52.9 15 0.00052 31.5 4.7 35 19-54 218-252 (260)
278 1zyb_A Transcription regulator 52.5 14 0.00046 31.0 4.2 50 4-54 163-221 (232)
279 3kp7_A Transcriptional regulat 52.5 14 0.00048 28.9 4.1 42 73-114 38-83 (151)
280 3cuq_B Vacuolar protein-sortin 51.4 23 0.0008 30.9 5.7 49 4-53 154-202 (218)
281 3bwg_A Uncharacterized HTH-typ 51.4 21 0.0007 31.1 5.3 43 16-59 26-69 (239)
282 1hw1_A FADR, fatty acid metabo 50.5 20 0.00067 30.6 5.0 41 18-59 30-71 (239)
283 1xd7_A YWNA; structural genomi 49.8 9.4 0.00032 30.7 2.7 55 5-62 10-65 (145)
284 3sxy_A Transcriptional regulat 49.6 12 0.00042 31.6 3.5 43 16-59 33-75 (218)
285 2hs5_A Putative transcriptiona 49.4 20 0.00067 31.1 4.9 43 16-59 49-91 (239)
286 3a5y_A GENX, putative lysyl-tR 49.3 11 0.00038 35.2 3.5 53 223-277 39-95 (345)
287 2bgc_A PRFA; bacterial infecti 49.2 18 0.00062 30.4 4.5 48 18-68 169-217 (238)
288 1ft9_A Carbon monoxide oxidati 48.1 14 0.00047 30.6 3.5 35 19-54 164-198 (222)
289 2qc0_A Uncharacterized protein 48.1 11 0.00039 35.2 3.3 67 7-74 300-366 (373)
290 1al3_A Cys regulon transcripti 47.6 3.9 0.00013 36.0 0.0 50 22-72 20-70 (324)
291 3edp_A LIN2111 protein; APC883 47.3 21 0.00071 31.1 4.7 41 18-59 32-73 (236)
292 2z99_A Putative uncharacterize 45.6 65 0.0022 28.3 7.6 110 7-116 17-145 (219)
293 2dk8_A DNA-directed RNA polyme 45.4 40 0.0014 25.2 5.4 61 3-64 13-76 (81)
294 2wv0_A YVOA, HTH-type transcri 44.1 23 0.0008 30.8 4.6 43 16-59 31-74 (243)
295 3fx3_A Cyclic nucleotide-bindi 44.0 37 0.0013 28.1 5.7 52 19-74 179-230 (237)
296 3qph_A TRMB, A global transcri 43.8 0.48 1.7E-05 44.4 -6.9 51 11-62 25-75 (342)
297 2v9v_A Selenocysteine-specific 43.1 1E+02 0.0035 23.6 7.9 104 8-117 6-124 (135)
298 3aaf_A Werner syndrome ATP-dep 42.9 25 0.00084 28.3 4.1 45 30-75 65-112 (134)
299 3eet_A Putative GNTR-family tr 42.8 32 0.0011 30.6 5.3 43 16-59 50-93 (272)
300 3ihu_A Transcriptional regulat 42.0 17 0.00059 30.8 3.3 43 16-59 37-79 (222)
301 1in4_A RUVB, holliday junction 41.3 58 0.002 29.3 6.9 70 5-78 260-333 (334)
302 2qen_A Walker-type ATPase; unk 41.3 50 0.0017 28.7 6.3 57 4-65 282-343 (350)
303 1fse_A GERE; helix-turn-helix 40.8 51 0.0017 22.3 5.1 40 4-45 14-53 (74)
304 1di1_A Aristolochene synthase; 40.5 4.3 0.00015 36.0 -0.9 58 211-268 2-62 (300)
305 1o5l_A Transcriptional regulat 40.3 5.9 0.0002 32.9 0.0 35 19-54 165-199 (213)
306 2xub_A DNA-directed RNA polyme 39.1 28 0.00096 34.2 4.7 52 5-57 361-412 (534)
307 2v7f_A RPS19, RPS19E SSU ribos 38.9 27 0.00091 28.9 3.8 49 18-69 67-129 (150)
308 3iwf_A Transcription regulator 38.8 26 0.0009 27.0 3.6 40 4-43 17-60 (107)
309 2pi2_A Replication protein A 3 38.6 6.6 0.00022 35.3 0.0 58 4-63 207-268 (270)
310 3lmm_A Uncharacterized protein 38.4 6.6 0.00023 39.3 0.0 57 6-63 518-575 (583)
311 3jw4_A Transcriptional regulat 37.4 34 0.0012 26.4 4.1 44 73-116 41-91 (148)
312 2k9l_A RNA polymerase sigma fa 36.1 62 0.0021 23.3 5.1 40 5-44 33-74 (76)
313 2jpc_A SSRB; DNA binding prote 36.0 49 0.0017 21.6 4.3 39 5-45 2-40 (61)
314 1olt_A Oxygen-independent copr 35.9 23 0.0008 33.8 3.4 58 8-69 372-433 (457)
315 2o3f_A Putative HTH-type trans 35.6 35 0.0012 26.3 3.9 40 4-43 21-64 (111)
316 1jko_C HIN recombinase, DNA-in 35.4 34 0.0012 21.2 3.2 34 7-42 12-45 (52)
317 1ucr_A Protein DSVD; dissimila 34.9 88 0.003 23.3 5.7 69 3-72 2-76 (78)
318 3ic7_A Putative transcriptiona 34.9 10 0.00035 29.9 0.6 39 20-59 37-75 (126)
319 1t6s_A Conserved hypothetical 34.7 2E+02 0.0067 23.9 9.7 100 15-114 19-137 (162)
320 4ets_A Ferric uptake regulatio 34.5 81 0.0028 25.8 6.2 58 4-62 33-100 (162)
321 4hbl_A Transcriptional regulat 33.8 36 0.0012 26.4 3.7 44 73-116 41-89 (149)
322 3f2g_A Alkylmercury lyase; MER 33.0 39 0.0013 29.8 4.1 39 5-43 23-61 (220)
323 3k0l_A Repressor protein; heli 31.8 40 0.0014 26.5 3.7 44 73-116 46-94 (162)
324 2fbh_A Transcriptional regulat 31.7 52 0.0018 24.9 4.3 45 72-116 36-86 (146)
325 1w7p_D VPS36P, YLR417W; ESCRT- 31.2 83 0.0029 31.5 6.6 51 3-54 493-550 (566)
326 1jhf_A LEXA repressor; LEXA SO 30.8 58 0.002 27.0 4.7 49 3-52 5-59 (202)
327 3to7_A Histone acetyltransfera 30.5 62 0.0021 29.6 5.1 53 7-64 196-249 (276)
328 3keo_A Redox-sensing transcrip 30.0 48 0.0016 28.8 4.2 41 5-45 17-59 (212)
329 2l0k_A Stage III sporulation p 29.9 43 0.0015 25.4 3.4 37 4-41 7-43 (93)
330 3rac_A Histidine-tRNA ligase; 29.9 38 0.0013 31.7 3.7 37 214-251 31-67 (373)
331 2pjp_A Selenocysteine-specific 28.4 53 0.0018 25.4 3.8 101 5-115 8-113 (121)
332 3boq_A Transcriptional regulat 27.9 62 0.0021 25.1 4.2 44 73-116 47-96 (160)
333 3cuq_A Vacuolar-sorting protei 27.8 56 0.0019 29.1 4.2 51 4-55 154-204 (234)
334 1je8_A Nitrate/nitrite respons 27.1 1.1E+02 0.0037 21.7 5.1 40 4-45 24-63 (82)
335 3ulq_B Transcriptional regulat 26.7 99 0.0034 22.6 4.9 40 4-45 32-71 (90)
336 3u5c_Z RP45, S31, YS23, 40S ri 26.4 85 0.0029 24.7 4.6 45 6-51 47-91 (108)
337 2z99_A Putative uncharacterize 25.3 82 0.0028 27.7 4.8 59 7-69 103-165 (219)
338 2ra5_A Putative transcriptiona 25.1 21 0.00072 31.2 1.0 37 20-57 42-78 (247)
339 3nxq_A Angiotensin-converting 24.9 37 0.0013 34.5 2.8 223 4-266 86-327 (629)
340 2du3_A O-phosphoseryl-tRNA syn 24.7 10 0.00036 37.8 -1.2 33 246-278 147-180 (534)
341 1z7m_A ATP phosphoribosyltrans 24.7 23 0.00078 32.8 1.1 36 215-251 31-66 (344)
342 3c3w_A Two component transcrip 24.7 90 0.0031 25.7 4.9 41 3-45 151-191 (225)
343 1t6s_A Conserved hypothetical 24.3 68 0.0023 26.8 3.9 59 7-69 97-160 (162)
344 2j0p_A HEMS, hemin transport p 24.1 73 0.0025 29.9 4.5 38 1-38 1-38 (345)
345 1x3u_A Transcriptional regulat 23.9 1.5E+02 0.0052 20.1 5.3 40 4-45 19-58 (79)
346 3eqx_A FIC domain containing t 23.9 77 0.0026 29.7 4.6 44 7-51 300-343 (373)
347 3net_A Histidyl-tRNA synthetas 23.4 31 0.0011 33.1 1.9 27 223-250 29-55 (465)
348 2dt5_A AT-rich DNA-binding pro 23.3 76 0.0026 27.3 4.2 39 6-44 14-54 (211)
349 1cf7_A Protein (transcription 23.2 1.2E+02 0.0041 22.1 4.6 54 5-59 15-71 (76)
350 2vt3_A REX, redox-sensing tran 23.0 79 0.0027 27.3 4.3 41 5-45 18-60 (215)
351 3c57_A Two component transcrip 22.9 1.1E+02 0.0037 22.4 4.5 40 4-45 30-69 (95)
352 3klo_A Transcriptional regulat 22.6 1.3E+02 0.0045 24.5 5.5 41 3-45 161-201 (225)
353 3tgn_A ADC operon repressor AD 21.5 65 0.0022 24.5 3.1 44 73-116 38-85 (146)
354 1p4w_A RCSB; solution structur 21.5 1.2E+02 0.0041 22.7 4.6 40 4-45 37-76 (99)
355 1lva_A Selenocysteine-specific 21.2 4E+02 0.014 23.0 11.0 128 4-139 2-146 (258)
356 1u5t_A Appears to BE functiona 20.7 83 0.0028 27.9 3.9 51 4-55 167-217 (233)
357 2xzm_8 RPS25E,; ribosome, tran 20.5 92 0.0031 25.8 3.8 53 8-61 52-107 (143)
358 3kor_A Possible Trp repressor; 20.3 1.4E+02 0.0049 23.8 4.9 35 7-43 66-100 (119)
359 2fna_A Conserved hypothetical 20.1 1.6E+02 0.0053 25.5 5.7 53 4-62 290-348 (357)
No 1
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=100.00 E-value=5.5e-69 Score=533.99 Aligned_cols=279 Identities=54% Similarity=0.928 Sum_probs=99.9
Q ss_pred CC-cHHHHHHHHHhccCC-CCChHHHHHhcCCCHHHHHHHHHHhhccCC-cEEEeeeeEEEEEeChhHHHHhhcCChHHH
Q psy10346 1 MA-SDLTEKILKYLDTNP-PVDTLDLAKLFNEDHQKVVGGMKSIETLGE-YLIVEPLSHKIWELTGEGNQVKDNGSHEVL 77 (292)
Q Consensus 1 m~-~~~e~~iL~~L~~~~-~~~~~ela~~~~~~~~~v~~~~~~L~s~~g-lv~~e~~~~~~~~LTeEG~~yl~~GlPE~r 77 (292)
|+ .+++++||.+|.+++ .++++++|+..|++|++|++++++|+++ | ||++++++...|+||+||++|+++||||+|
T Consensus 1 ~~~~~~~~~iL~~l~~~~~~~~~~~~a~~~~~~~~~v~~~~~~L~~~-~~~v~~~~~~~~~~~Lt~eg~~~~~~G~pE~~ 79 (508)
T 3l4g_A 1 MADGQVAELLLRRLEASDGGLDSAELAAELGMEHQAVVGAVKSLQAL-GEVIEAELRSTKHWELTAEGEEIAREGSHEAR 79 (508)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCchHHHHHHHHHHHhcCCCcCHHHHHHHcCCCHHHHHHHHHHHHhC-CCeEEEEEEEEEEEEECHHHHHHHHcCCHHHH
Confidence 66 479999999998777 7899999999999999999999999997 7 999999999999999999999999999999
Q ss_pred HHhhcCCCCCChHHHhhcCCchhhHHHHHHHcCCeecccCc-c--eeeccCCCchHHHHHHHHHHhccCCCCCChhhHHh
Q psy10346 78 VFNNVPSEGIGQKELLATFPNAKVGFSKAMAKGWISLDKAT-G--KVLRKVDSVTDELQAHLKLIANNEYDKVPEANKVD 154 (292)
Q Consensus 78 l~~~l~~~~~~~~el~~~~~~~~ig~~~a~k~gwi~i~~~~-g--~v~~~~~~~~d~~~~~L~~i~~~~~~~l~~~~~~~ 154 (292)
|+++|+++|+++++|.+ ++.++||+|||+|+|||+++++. | .+.++++.+.|.++..|+.+.++....++++.+++
T Consensus 80 ~~~~~~~~~~~~~~l~~-~~~~~i~~~~~~k~~wi~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~ 158 (508)
T 3l4g_A 80 VFRSIPPEGLAQSELMR-LPSGKVGFSKAMSNKWIRVDKSAADGPRVFRVVDSMEDEVQRRLQLVRGGQAEKLGEKERSE 158 (508)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhhhcCccHHHHhc-CcchhHHHHHHHHCCCEEecCCCcCcceEeeccCccchHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 99999987899999987 57789999999999999998863 2 46677777888889999999876533456778999
Q ss_pred hhcccceeeEEEEEEEEecCccccccccccccccCcccccCCCeeccccCCCcccCCCCCCCCCCCChHHHHHHHHHHHh
Q psy10346 155 YKKRKLLQEVTIKSFLLKKGPEFSTTIQKPETELTPEMIASGSWKTLNFKPYNFDAMGISLPSGHLHPLMKVRAEFRQIF 234 (292)
Q Consensus 155 LkkRkLv~~~~~~~~~v~~g~~~~~~~~~~~t~LT~eml~sg~w~~~~fk~y~~~~~~~~~~~g~~Hpl~~~~~~i~~if 234 (292)
|||||||...+.++|.|++|++|+.++++++|+||+|||+||+|+++.||+||++++|+....|+.||+++++++|+++|
T Consensus 159 lkkRklv~~~~~~~~~v~~g~~~~~~~~~~~t~lT~e~l~sg~Wk~~~f~~y~~~~~g~~~~~G~lHPl~~v~~~Ir~if 238 (508)
T 3l4g_A 159 LRKRKLLAEVTLKTYWVSKGSAFSTSISKQETELSPEMISSGSWRDRPFKPYNFLAHGVLPDSGHLHPLLKVRSQFRQIF 238 (508)
T ss_dssp ------------------------CCSCCCCCSCCTTTTTSSTTTTSCCCCCCSSSCCCCCCCCBCCHHHHHHHHHHHHH
T ss_pred HHhcCCeEEEEEEEEEEecchhhhhhhhhhhccCCHHHhcCCCcCCCCceecccCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCceecCCCCccccceeccccCCCCCCCCCCCCCCceeecCCCCC
Q psy10346 235 LDMGFTEMPTNNFVESSFWNFDALFQPQQHPARDAHDTFFVTDPKTS 281 (292)
Q Consensus 235 ~~mGF~e~~~~~~Ves~f~NFD~L~~PqdHPAR~~~DTfyl~~~~~~ 281 (292)
.+|||+||.+||+|+++|||||+||+|||||||+|||||||++|.++
T Consensus 239 ~~mGF~Ev~t~~~ves~~~NFDaLn~P~dHPaR~~~Dtfyi~~P~~~ 285 (508)
T 3l4g_A 239 LEMGFTEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRDPAEA 285 (508)
T ss_dssp HHTTCEECCCCCSEEEHHHHTGGGTCCSSSTTSSTTTSCBBSTTCBC
T ss_pred HHCcCeEeccCCccccHHHHHHhcCCCCCCcccccCceEEEcCcccc
Confidence 99999998789999999999999999999999999999999998643
No 2
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A
Probab=99.83 E-value=9e-22 Score=191.79 Aligned_cols=101 Identities=23% Similarity=0.377 Sum_probs=86.2
Q ss_pred ccccccc-ccccccCcccccCCCeeccccCCCcccCCCCCCCCCCCChHHHHHHHHHHHhhhC--------CceecCCCC
Q psy10346 176 EFSTTIQ-KPETELTPEMIASGSWKTLNFKPYNFDAMGISLPSGHLHPLMKVRAEFRQIFLDM--------GFTEMPTNN 246 (292)
Q Consensus 176 ~~~~~~~-~~~t~LT~eml~sg~w~~~~fk~y~~~~~~~~~~~g~~Hpl~~~~~~i~~if~~m--------GF~e~~~~~ 246 (292)
+|+.++. +...+++..++.+++|.|.+.+ +++++|+..+.|+.||+++++++|+++|.+| ||+++.+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~ni~~~--~~~~~~~~~~~g~~hPl~~~~~~i~~~f~~~~~~~~g~~Gf~e~~~~~ 81 (415)
T 3cmq_A 4 ECATQRAPGSVVELLGKSYPQDDHSNLTRK--VLTRVGRNLHNQQHHPLWLIKERVKEHFYKQYVGRFGTPLFSVYDNLS 81 (415)
T ss_dssp -------CCSEEEETTEEEECCSSCCCCHH--HHTTTTCCGGGSTTCHHHHHHHHHHHHHHHHHHHCSSSCCCEEECCCC
T ss_pred hhhhhccCCCcEEECCeeeccCccccCChh--hhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhccccCCCCcEEEcCCC
Confidence 3444443 4557899999999999998644 8889999999999999999999999999999 999997559
Q ss_pred ccccceeccccCCCCCCCCCCCCCCceeecCC
Q psy10346 247 FVESSFWNFDALFQPQQHPARDAHDTFFVTDP 278 (292)
Q Consensus 247 ~Ves~f~NFD~L~~PqdHPAR~~~DTfyl~~~ 278 (292)
+|+|++||||+||+|+|||||++||||||++.
T Consensus 82 ~v~s~~~NFd~L~~p~dHpaR~~~Dtfyi~~~ 113 (415)
T 3cmq_A 82 PVVTTWQNFDSLLIPADHPSRKKGDNYYLNRT 113 (415)
T ss_dssp SEEEHHHHTGGGTCCTTCGGGCGGGSCBSSSS
T ss_pred ccccHHHHHHHhCCCCCCCcccccceEEecCC
Confidence 99999999999999999999999999999864
No 3
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=99.79 E-value=8.8e-21 Score=189.61 Aligned_cols=91 Identities=26% Similarity=0.336 Sum_probs=84.2
Q ss_pred cccccccCcccccCCCeecc--ccCCCcccCCCCCC--CCCCCChHHHHHHHHHHHhhhCCceecCCCCccccceecccc
Q psy10346 182 QKPETELTPEMIASGSWKTL--NFKPYNFDAMGISL--PSGHLHPLMKVRAEFRQIFLDMGFTEMPTNNFVESSFWNFDA 257 (292)
Q Consensus 182 ~~~~t~LT~eml~sg~w~~~--~fk~y~~~~~~~~~--~~g~~Hpl~~~~~~i~~if~~mGF~e~~~~~~Ves~f~NFD~ 257 (292)
.+++++||+|||. |+|++. .|++|+++...+.. ..|+.||+++++++||++|.+|||+||. +|.|+++|||
T Consensus 15 ~~~~~~lt~~~~~-~~w~~~~~~~~~~~~d~~~P~~~~~~G~~HPl~~~~~~ir~~f~~mGF~e~~-~p~ies~~~n--- 89 (549)
T 2du7_A 15 IKKVLELAEKDFE-TAWRETRALIKDKHIDNKYPRLKPVYGKPHPVMETIERLRQAYLRMGFEEMI-NPVIVDEMEI--- 89 (549)
T ss_dssp HHHHHTTSTTCCS-STTTSCCCSSCCCTTTTSSSSSCCCCCCCCHHHHHHHHHHHHHHTTTCEECC-CCSCEEHHHH---
T ss_pred hHHHHHhhHHHHH-HHHHhhhhhhhccCcCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHCCCEEee-CCeEeehHHh---
Confidence 4568999999999 999999 99999998877655 7899999999999999999999999986 8999999999
Q ss_pred CCCCCC-CCCCCCCC-ceeecCCC
Q psy10346 258 LFQPQQ-HPARDAHD-TFFVTDPK 279 (292)
Q Consensus 258 L~~Pqd-HPAR~~~D-Tfyl~~~~ 279 (292)
+||+ ||||++|| ||||++|.
T Consensus 90 --~pq~ghpAr~~~D~tfyl~~p~ 111 (549)
T 2du7_A 90 --YKQFGPEAMAVLDRCFYLAGLP 111 (549)
T ss_dssp --HHHTCTTHHHHGGGCCEEECCC
T ss_pred --CCCcCCCcccccCceEEECCCC
Confidence 6999 99999999 99999874
No 4
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=99.79 E-value=3.8e-21 Score=194.05 Aligned_cols=91 Identities=20% Similarity=0.247 Sum_probs=61.4
Q ss_pred cccccccCcccccCCCeecc--ccCCCcccCCCCCC--CCCCCChHHHHHHHHHHHhhhCCceecCCCCccccceecccc
Q psy10346 182 QKPETELTPEMIASGSWKTL--NFKPYNFDAMGISL--PSGHLHPLMKVRAEFRQIFLDMGFTEMPTNNFVESSFWNFDA 257 (292)
Q Consensus 182 ~~~~t~LT~eml~sg~w~~~--~fk~y~~~~~~~~~--~~g~~Hpl~~~~~~i~~if~~mGF~e~~~~~~Ves~f~NFD~ 257 (292)
.+++++||+||| +|+|++. .|++|+++...+.. ..|+.||+++++++||++|.+|||+||. +|.|+++|||
T Consensus 23 ~~~~~~lt~e~~-~~~W~~~~~~~~~~~id~~~P~~~~~~G~~HPl~~~~~~IR~if~~mGF~E~~-~p~vese~~n--- 97 (648)
T 2odr_B 23 REEIIEMANKDF-EKAWIETKDLIKAKKINESYPRIKPVFGKTHPVNDTIENLRQAYLRMGFEEYI-NPVIVDERDI--- 97 (648)
T ss_dssp ----------------------------CTTSGGGCCCCCCBCCHHHHHHHHHHHHHHHTTCEECC-CCSEEEHHHH---
T ss_pred hHHHHHhCHHHh-hHHHHhhhhhccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEee-CCEEeehhhh---
Confidence 456899999999 9999999 89999998877655 7899999999999999999999999996 8999999999
Q ss_pred CCCCCC-CCCCCCCC-ceeecCCC
Q psy10346 258 LFQPQQ-HPARDAHD-TFFVTDPK 279 (292)
Q Consensus 258 L~~Pqd-HPAR~~~D-Tfyl~~~~ 279 (292)
+||+ ||||++|| ||||++|.
T Consensus 98 --~pq~gHpAR~~~D~tFyl~~P~ 119 (648)
T 2odr_B 98 --YKQFGPEAMAVLDRCFYLAGLP 119 (648)
T ss_dssp --HHHHGGGHHHHHHTCEEEEBCC
T ss_pred --CCCcCCCccccCCceEEECCCC
Confidence 6999 99999999 99999875
No 5
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=99.77 E-value=4.6e-21 Score=194.01 Aligned_cols=91 Identities=20% Similarity=0.247 Sum_probs=84.6
Q ss_pred cccccccCcccccCCCeecc--ccCCCcccCCCCCC--CCCCCChHHHHHHHHHHHhhhCCceecCCCCccccceecccc
Q psy10346 182 QKPETELTPEMIASGSWKTL--NFKPYNFDAMGISL--PSGHLHPLMKVRAEFRQIFLDMGFTEMPTNNFVESSFWNFDA 257 (292)
Q Consensus 182 ~~~~t~LT~eml~sg~w~~~--~fk~y~~~~~~~~~--~~g~~Hpl~~~~~~i~~if~~mGF~e~~~~~~Ves~f~NFD~ 257 (292)
.+++++||+||| +|+|++. .|++|+++...+.. ..|+.||+++++++||++|.+|||+||. +|.|+++|||
T Consensus 23 ~~~~~~lt~e~~-~~~W~~~~~~~~~~~id~~~P~~~~~~G~~HPl~~~~~~IReif~~mGF~E~~-~p~vese~~n--- 97 (685)
T 2odr_D 23 REEIIEMANKDF-EKAWIETKDLIKAKKINESYPRIKPVFGKTHPVNDTIENLRQAYLRMGFEEYI-NPVIVDERDI--- 97 (685)
T ss_dssp CHHHHHHHHHCH-HHHHHHHGGGSCCCCGGGSTTTCCCCCCBCCHHHHHHHHHHHHHHHTTCEECC-CCSEEEHHHH---
T ss_pred hHHHhhhCHHHh-hHHHHhhhhhccccccCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHCCCEEee-CCEEeehHHh---
Confidence 456899999999 9999999 99999998877755 7899999999999999999999999996 8999999999
Q ss_pred CCCCCC-CCCCCCCC-ceeecCCC
Q psy10346 258 LFQPQQ-HPARDAHD-TFFVTDPK 279 (292)
Q Consensus 258 L~~Pqd-HPAR~~~D-Tfyl~~~~ 279 (292)
+||+ ||||++|| ||||++|.
T Consensus 98 --~pq~gHPAR~~~D~tFyL~~P~ 119 (685)
T 2odr_D 98 --YKQFGPEAMAVLDRCFYLAGLP 119 (685)
T ss_dssp --HHHHGGGHHHHHHTCEEEEBCC
T ss_pred --CCCcCCCccccCCcEEEECCCC
Confidence 6999 99999999 99999875
No 6
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=99.77 E-value=4.2e-21 Score=194.03 Aligned_cols=91 Identities=20% Similarity=0.247 Sum_probs=84.4
Q ss_pred cccccccCcccccCCCeecc--ccCCCcccCCCCCC--CCCCCChHHHHHHHHHHHhhhCCceecCCCCccccceecccc
Q psy10346 182 QKPETELTPEMIASGSWKTL--NFKPYNFDAMGISL--PSGHLHPLMKVRAEFRQIFLDMGFTEMPTNNFVESSFWNFDA 257 (292)
Q Consensus 182 ~~~~t~LT~eml~sg~w~~~--~fk~y~~~~~~~~~--~~g~~Hpl~~~~~~i~~if~~mGF~e~~~~~~Ves~f~NFD~ 257 (292)
.+++++||+||| +|+|++. .|++|+++...+.. ..|+.||+++++++||++|.+|||+||. +|.|+++|||
T Consensus 23 ~~~~~~lt~e~~-~~~W~~~~~~~~~~~id~~~P~~~~~~G~~HPl~~~~~~IR~if~~mGF~E~~-~p~vese~~n--- 97 (665)
T 2odr_A 23 REEIIEMANKDF-EKAWIETKDLIKAKKINESYPRIKPVFGKTHPVNDTIENLRQAYLRMGFEEYI-NPVIVDERDI--- 97 (665)
T ss_dssp CHHHHHHHHHCH-HHHHHHHGGGSCCCCTTTSGGGSCCCCCBCCHHHHHHHHHHHHHHHTTCEECC-CCSEEEHHHH---
T ss_pred hHHHHHhCHHHh-hHHHHhhhhhccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEee-CCEEeeehhh---
Confidence 456899999999 9999999 99999998877654 7899999999999999999999999996 8999999999
Q ss_pred CCCCCC-CCCCCCCC-ceeecCCC
Q psy10346 258 LFQPQQ-HPARDAHD-TFFVTDPK 279 (292)
Q Consensus 258 L~~Pqd-HPAR~~~D-Tfyl~~~~ 279 (292)
+||+ ||||++|| ||||++|.
T Consensus 98 --~pq~gHpAR~~~D~tFyL~~P~ 119 (665)
T 2odr_A 98 --YKQFGPEAMAVLDRCFYLAGLP 119 (665)
T ss_dssp --HHHHGGGHHHHHHTCEEEEBCC
T ss_pred --CCCcCCCccccCCcEEEECCCC
Confidence 6999 99999999 99999875
No 7
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=99.77 E-value=5.1e-21 Score=194.05 Aligned_cols=91 Identities=20% Similarity=0.247 Sum_probs=84.6
Q ss_pred cccccccCcccccCCCeecc--ccCCCcccCCCCCC--CCCCCChHHHHHHHHHHHhhhCCceecCCCCccccceecccc
Q psy10346 182 QKPETELTPEMIASGSWKTL--NFKPYNFDAMGISL--PSGHLHPLMKVRAEFRQIFLDMGFTEMPTNNFVESSFWNFDA 257 (292)
Q Consensus 182 ~~~~t~LT~eml~sg~w~~~--~fk~y~~~~~~~~~--~~g~~Hpl~~~~~~i~~if~~mGF~e~~~~~~Ves~f~NFD~ 257 (292)
.+++++||+||| +|+|++. .|++|+++...+.. ..|+.||+++++++||++|.+|||+||. +|.|+++|||
T Consensus 23 ~~~~~~lt~e~~-~~~W~~~~~~~~~~~id~~~P~~~~~~G~~HPl~~~~~~IReif~~mGF~Ev~-~p~Vese~~n--- 97 (701)
T 2odr_C 23 REEIIEMANKDF-EKAWIETKDLIKAKKINESYPRIKPVFGKTHPVNDTIENLRQAYLRMGFEEYI-NPVIVDERDI--- 97 (701)
T ss_dssp CHHHHHHHHHCH-HHHHHHHGGGSCCCCTTTSSTTCCCCCCBCCHHHHHHHHHHHHHHHTTCEECC-CCSEEEHHHH---
T ss_pred hHHHHHhCHHHh-hHHHHhhhhhccccccCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHCCCEEee-CCEEeeehhh---
Confidence 456899999999 9999999 99999998877755 7899999999999999999999999996 8999999999
Q ss_pred CCCCCC-CCCCCCCC-ceeecCCC
Q psy10346 258 LFQPQQ-HPARDAHD-TFFVTDPK 279 (292)
Q Consensus 258 L~~Pqd-HPAR~~~D-Tfyl~~~~ 279 (292)
+||+ ||||++|| ||||++|.
T Consensus 98 --~pq~gHPAR~~~D~tFYL~~P~ 119 (701)
T 2odr_C 98 --YKQFGPEAMAVLDRCFYLAGLP 119 (701)
T ss_dssp --HHHHGGGHHHHHHTCEEEEECC
T ss_pred --CCCcCCCccccCCcEEEECCCC
Confidence 6999 99999999 99999875
No 8
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=99.71 E-value=2.3e-18 Score=163.11 Aligned_cols=72 Identities=35% Similarity=0.617 Sum_probs=68.2
Q ss_pred CCcccCCCCCCCCCCCChHHHHHHHHHHHhhhCCceecCCCCccccceeccccCCCCCCCCCCCCCCceeecC
Q psy10346 205 PYNFDAMGISLPSGHLHPLMKVRAEFRQIFLDMGFTEMPTNNFVESSFWNFDALFQPQQHPARDAHDTFFVTD 277 (292)
Q Consensus 205 ~y~~~~~~~~~~~g~~Hpl~~~~~~i~~if~~mGF~e~~~~~~Ves~f~NFD~L~~PqdHPAR~~~DTfyl~~ 277 (292)
.+++++|++....|+.||+++++++|+++|.+|||+|+ .+|.|++++||||+||+|+|||||++|||||+++
T Consensus 91 ~id~TLP~~~~~~G~~hp~~~~~~~Ir~if~~~Gf~ev-~~~~ve~~~~nFd~Ln~p~dhpaR~~~dt~~i~e 162 (327)
T 3pco_A 91 TIDVSLPGRRIENGGLHPVTRTIDRIESFFGELGFTVA-TGPEIEDDYHNFDALNIPGHHPARADHDTFWFDT 162 (327)
T ss_dssp CCCTTSCCCCCCCCCCCHHHHHHHHHHHHHHTTTCBCC-CCCSEECTCCCCCTTTCCSSSHHHHHTTCCBSSS
T ss_pred CCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCeEE-ECCCccCCHHHHHhhCCCCCChhhcccccEEeCC
Confidence 36888999999999999999999999999999999997 5899999999999999999999999999999974
No 9
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A*
Probab=99.68 E-value=2.3e-17 Score=157.65 Aligned_cols=74 Identities=42% Similarity=0.665 Sum_probs=69.6
Q ss_pred CcccCCCCCCCCCCCChHHHHHHHHHHHhhhCCceecCCCCccccceeccccCCCCCCCCCCCCCCceeecCCCC
Q psy10346 206 YNFDAMGISLPSGHLHPLMKVRAEFRQIFLDMGFTEMPTNNFVESSFWNFDALFQPQQHPARDAHDTFFVTDPKT 280 (292)
Q Consensus 206 y~~~~~~~~~~~g~~Hpl~~~~~~i~~if~~mGF~e~~~~~~Ves~f~NFD~L~~PqdHPAR~~~DTfyl~~~~~ 280 (292)
+++..|+.....|+.||+++++++|+++|.+|||.|+. +|+|++++||||+|++|++||||+++|||||++|..
T Consensus 86 i~~tlP~~~~~~g~~hp~~~~~~~Ir~~f~~~Gf~Ev~-~p~v~~~~~nfd~L~~p~~hpar~~~dt~~l~nP~s 159 (350)
T 1b7y_A 86 VDVSLPGASLFSGGLHPITLMERELVEIFRALGYQAVE-GPEVESEFFNFDALNIPEHHPARDMWDTFWLTGEGF 159 (350)
T ss_dssp CCTTSCCCCCCCCBCCHHHHHHHHHHHHHHTTTCEECC-CCSEEEHHHHTTTTTCCSSSTTTTSSCCCBEECSSC
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEE-CcchhcchhHHHhhCCCCCCccccccccEEEcCccc
Confidence 57788888889999999999999999999999999986 899999999999999999999999999999998754
No 10
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=99.37 E-value=3.5e-13 Score=125.41 Aligned_cols=72 Identities=32% Similarity=0.650 Sum_probs=66.0
Q ss_pred CCCcccCCCCCCCCCCCChHHHHHHHHHHHhhhCCceecCCCCccccceeccccCCCCCCCCCCCCCCceeec
Q psy10346 204 KPYNFDAMGISLPSGHLHPLMKVRAEFRQIFLDMGFTEMPTNNFVESSFWNFDALFQPQQHPARDAHDTFFVT 276 (292)
Q Consensus 204 k~y~~~~~~~~~~~g~~Hpl~~~~~~i~~if~~mGF~e~~~~~~Ves~f~NFD~L~~PqdHPAR~~~DTfyl~ 276 (292)
-.++...|+.....|..||+.++++.||++|.++||.|+ +.|.|+++.||||+|++|++||||+++|||||+
T Consensus 36 d~i~~tlp~~~~~~g~~~~~~~~~~~iR~~l~~~Gf~Ev-~~s~l~~~~~nf~~l~~~~~~par~~~d~~~l~ 107 (294)
T 2rhq_A 36 ETIDVTLPSRQISIGSKHPLTRTVEEIEDLFLGLGYEIV-DGYEVEQDYYNFEALNLPKSHPARDMQDSFYIT 107 (294)
T ss_dssp TCCCTTSCCCCCCCCCCCHHHHHHHHHHHHHHTTTCEEC-CCCSEEEHHHHTGGGTCCTTCGGGCTTTSCBSS
T ss_pred ccCCccCCCcccCCCCCCHHHHHHHHHHHHHHHCCCEEE-cCcceeeehhhHHhhCCCCCccccccCCcEEEc
Confidence 345666777777889999999999999999999999999 789999999999999999999999999999995
No 11
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=99.14 E-value=1.2e-12 Score=130.94 Aligned_cols=88 Identities=20% Similarity=0.352 Sum_probs=76.8
Q ss_pred ccccccCcccccCCCeecc--ccCCCcccCCCCCC--CCCCCChHHHHHHHHHHHhhhCCceecCCCCccccceeccccC
Q psy10346 183 KPETELTPEMIASGSWKTL--NFKPYNFDAMGISL--PSGHLHPLMKVRAEFRQIFLDMGFTEMPTNNFVESSFWNFDAL 258 (292)
Q Consensus 183 ~~~t~LT~eml~sg~w~~~--~fk~y~~~~~~~~~--~~g~~Hpl~~~~~~i~~if~~mGF~e~~~~~~Ves~f~NFD~L 258 (292)
++++.+|+..| +++|+-. .+|.|.++..++.+ ..|+.||+.+++++|+++|.+|||+|+. ++.+++++||
T Consensus 6 ~~~~~~tR~Di-~~~~DliEEvaR~yGyd~i~~~~~~~~g~~hp~~~~~~~Ir~~l~~lGF~Ev~-~~s~~s~~~n---- 79 (534)
T 2du3_A 6 QKYRELAEKDF-EAAWKAGKEILAERSPNELYPRVGFSFGKEHPLFATIQRLREAYLSIGFSEVV-NPLIVEDVHV---- 79 (534)
T ss_dssp HHHHHHHHHCH-HHHHHHGGGGSCCCCGGGSTTSSCCCCCCCCHHHHHHHHHHHHHHHTTCEECC-CCCEEETHHH----
T ss_pred HHhccCChhhc-chhhHHHhhhhhccCCCCCCCccCCCCCCCCHHHHHHHHHHHHHHHCCCEEEe-CceEeChhhc----
Confidence 34567777766 5678766 78999999888766 7899999999999999999999999986 7899999999
Q ss_pred CCCCC-CCCCCCCC-ceeecC
Q psy10346 259 FQPQQ-HPARDAHD-TFFVTD 277 (292)
Q Consensus 259 ~~Pqd-HPAR~~~D-Tfyl~~ 277 (292)
+||+ ||||++|| |||++.
T Consensus 80 -~p~~~Hpar~~~Dr~fyl~~ 99 (534)
T 2du3_A 80 -KKQFGREALAVLDRCFYLAT 99 (534)
T ss_dssp -HHHHGGGHHHHHTTSCEEEE
T ss_pred -ccccccchhhhccceeeccC
Confidence 9998 99999999 999975
No 12
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=97.74 E-value=9.8e-05 Score=58.57 Aligned_cols=73 Identities=14% Similarity=0.114 Sum_probs=61.9
Q ss_pred HHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEe----eeeEEEEEeChhHHHHhhcCChHHH
Q psy10346 4 DLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVE----PLSHKIWELTGEGNQVKDNGSHEVL 77 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e----~~~~~~~~LTeEG~~yl~~GlPE~r 77 (292)
..+..||..|...+.++..++|..+|+++..|.+.+..|+++ |+|... ..-...+.||++|+.++....+...
T Consensus 38 ~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~L~~~-glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~~ 114 (140)
T 2nnn_A 38 PTQWAALVRLGETGPCPQNQLGRLTAMDAATIKGVVERLDKR-GLIQRSADPDDGRRLLVSLSPAGRAELEAGLAAAR 114 (140)
T ss_dssp HHHHHHHHHHHHHSSBCHHHHHHHTTCCHHHHHHHHHHHHHT-TCEEEEEETTEEEEEEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHC-CCEEeeCCCCCCCeeeeEECHhHHHHHHHHHHHHH
Confidence 467889999977677889999999999999999999999987 999875 3445678999999999987766654
No 13
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=97.72 E-value=0.00012 Score=55.99 Aligned_cols=71 Identities=18% Similarity=0.112 Sum_probs=58.8
Q ss_pred HHHHHHHHHhccCCCCChHHH----HHhcCCCHHHHHHHHHHhhccCCcEEEeee-eEEEEEeChhHHHHhhcCChH
Q psy10346 4 DLTEKILKYLDTNPPVDTLDL----AKLFNEDHQKVVGGMKSIETLGEYLIVEPL-SHKIWELTGEGNQVKDNGSHE 75 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~~~~el----a~~~~~~~~~v~~~~~~L~s~~glv~~e~~-~~~~~~LTeEG~~yl~~GlPE 75 (292)
..|..||..|...+.....++ |+.++++...|.+.++.|+.+ |||.-... ....+.||++|+++++.-.+.
T Consensus 8 ~~q~~iL~~l~~~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~-gli~r~~~~r~~~~~LT~~G~~~~~~~~~~ 83 (99)
T 1tbx_A 8 YPEAIVLAYLYDNEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQE-GFVKERQERGEKRLYLTEKGKLFAISLKTA 83 (99)
T ss_dssp CHHHHHHHHHTTCTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHT-TSEEEEEETTEEEEEECHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHC-CCEEEEecCCceEEEECHHHHHHHHHHHHH
Confidence 567889999987777888899 888999999999999999987 99986433 456789999999988654443
No 14
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=97.71 E-value=0.00013 Score=58.04 Aligned_cols=88 Identities=18% Similarity=0.147 Sum_probs=68.7
Q ss_pred HHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEee----eeEEEEEeChhHHHHh-hcCChHHH-
Q psy10346 4 DLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEP----LSHKIWELTGEGNQVK-DNGSHEVL- 77 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~----~~~~~~~LTeEG~~yl-~~GlPE~r- 77 (292)
..+..||..|...+.++..++|..+|+++..|.+.+..|+.+ |+|.... .....+.||++|++++ ..-.+...
T Consensus 31 ~~~~~iL~~l~~~~~~~~~ela~~l~is~~~vs~~l~~L~~~-gli~~~~~~~d~r~~~~~lT~~G~~~~~~~~~~~~~~ 109 (142)
T 3bdd_A 31 LTRYSILQTLLKDAPLHQLALQERLQIDRAAVTRHLKLLEES-GYIIRKRNPDNQREVLVWPTEQAREALITNPSAHHQA 109 (142)
T ss_dssp HHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEEECSSSTTCEEEEECHHHHHHHTTSCCHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC-CCEEecCCCCCCCeeEEEECHHHHHHHHHHHHHHHHH
Confidence 467889999977677889999999999999999999999987 9998765 3366789999999999 88887765
Q ss_pred HHhhcCCCCCChHHHh
Q psy10346 78 VFNNVPSEGIGQKELL 93 (292)
Q Consensus 78 l~~~l~~~~~~~~el~ 93 (292)
+...+- .+++-+++.
T Consensus 110 ~~~~~~-~~l~~~e~~ 124 (142)
T 3bdd_A 110 IKTSMN-QILTVEESE 124 (142)
T ss_dssp HHHHHH-TSSCHHHHH
T ss_pred HHHHHH-hcCCHHHHH
Confidence 332222 245544443
No 15
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=97.68 E-value=0.00016 Score=57.24 Aligned_cols=88 Identities=16% Similarity=0.158 Sum_probs=67.7
Q ss_pred HHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEee----eeEEEEEeChhHHHHhhcCChHHH-H
Q psy10346 4 DLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEP----LSHKIWELTGEGNQVKDNGSHEVL-V 78 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~----~~~~~~~LTeEG~~yl~~GlPE~r-l 78 (292)
..+..||..|..++.+...++|+.+|+++..|.+.+..|+.+ |+|.... .-...+.||+.|+.++....+... +
T Consensus 29 ~~~~~iL~~l~~~~~~~~~ela~~l~~s~~tvs~~l~~L~~~-glv~~~~~~~d~R~~~~~lT~~G~~~~~~~~~~~~~~ 107 (138)
T 3bpv_A 29 DAQVACLLRIHREPGIKQDELATFFHVDKGTIARTLRRLEES-GFIEREQDPENRRRYILEVTRRGEEIIPLILKVEERW 107 (138)
T ss_dssp HHHHHHHHHHHHSTTCBHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEEEETTEEEEEEEEECHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHC-CCEEeecCCCCceeEEeeECHhHHHHHHHHHHHHHHH
Confidence 567889999987778889999999999999999999999987 9998743 445678999999999887666544 2
Q ss_pred HhhcCCCCCChHHHh
Q psy10346 79 FNNVPSEGIGQKELL 93 (292)
Q Consensus 79 ~~~l~~~~~~~~el~ 93 (292)
...+- .+++-+++.
T Consensus 108 ~~~~~-~~l~~~e~~ 121 (138)
T 3bpv_A 108 EDLLF-RDFTEDERK 121 (138)
T ss_dssp HHHHT-TTSCHHHHH
T ss_pred HHHHH-hcCCHHHHH
Confidence 22222 345544443
No 16
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=97.68 E-value=9.9e-05 Score=59.37 Aligned_cols=88 Identities=15% Similarity=0.128 Sum_probs=67.5
Q ss_pred HHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEee----eeEEEEEeChhHHHHhhcCChHHHHH
Q psy10346 4 DLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEP----LSHKIWELTGEGNQVKDNGSHEVLVF 79 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~----~~~~~~~LTeEG~~yl~~GlPE~rl~ 79 (292)
..|..||..|...+.+...++|..+++++..|.+.+..|+.+ |+|+... .-...+.||++|+++++.-.+...-+
T Consensus 36 ~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~-Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~~~~~~~ 114 (140)
T 3hsr_A 36 YTGYIVLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLEKK-DYVVRTREEKDERNLQISLTEQGKAIKSPLAEISVKV 114 (140)
T ss_dssp HHHHHHHHHSCTTCEEEHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEEC-------CEEEECHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHHC-CCeEecCCCCCcceeeeeEChHHHHHHHHHHHHHHHH
Confidence 567889999987777888999999999999999999999987 9999763 34567899999999998766665532
Q ss_pred hhcCCCCCChHHHhh
Q psy10346 80 NNVPSEGIGQKELLA 94 (292)
Q Consensus 80 ~~l~~~~~~~~el~~ 94 (292)
..-- +++-+|+..
T Consensus 115 ~~~~--~l~~~e~~~ 127 (140)
T 3hsr_A 115 FNEF--NISEREASD 127 (140)
T ss_dssp HHTS--CCCHHHHHH
T ss_pred HHhc--CCCHHHHHH
Confidence 2211 555555444
No 17
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=97.61 E-value=0.00022 Score=56.96 Aligned_cols=88 Identities=15% Similarity=0.202 Sum_probs=67.4
Q ss_pred HHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeee----eEEEEEeChhHHHHhhcCChHHH-H
Q psy10346 4 DLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPL----SHKIWELTGEGNQVKDNGSHEVL-V 78 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~----~~~~~~LTeEG~~yl~~GlPE~r-l 78 (292)
..+..||..|. .+.+...++|..+|+++..|.+.+..|+.+ |+|..... -...+.||+.|+.++....+... +
T Consensus 37 ~~~~~iL~~l~-~~~~~~~ela~~l~~s~~tvs~~l~~Le~~-glv~r~~~~~d~r~~~~~lT~~G~~~~~~~~~~~~~~ 114 (146)
T 2gxg_A 37 YLDFLVLRATS-DGPKTMAYLANRYFVTQSAITASVDKLEEM-GLVVRVRDREDRRKILIEITEKGLETFNKGIEIYKKL 114 (146)
T ss_dssp HHHHHHHHHHT-TSCBCHHHHHHHTTCCHHHHHHHHHHHHHT-TSEEEEECSSCTTCEEEEECHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-cCCcCHHHHHHHhCCCchhHHHHHHHHHHC-CCEEeecCCCCCceEEEEECHHHHHHHHHHHHHHHHH
Confidence 56888999998 778899999999999999999999999987 99987542 35678999999999987666544 2
Q ss_pred HhhcCCCCCChHHHhh
Q psy10346 79 FNNVPSEGIGQKELLA 94 (292)
Q Consensus 79 ~~~l~~~~~~~~el~~ 94 (292)
...+- .+++-+++..
T Consensus 115 ~~~~~-~~l~~~e~~~ 129 (146)
T 2gxg_A 115 ANEVT-GDLSEDEVIL 129 (146)
T ss_dssp HHHHT-TTSCHHHHHH
T ss_pred HHHHH-hcCCHHHHHH
Confidence 22222 3455444433
No 18
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=97.59 E-value=0.00017 Score=57.61 Aligned_cols=89 Identities=16% Similarity=0.068 Sum_probs=67.2
Q ss_pred HHHHHHHHHh-ccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEee----eeEEEEEeChhHHHHhhcCChHHH-
Q psy10346 4 DLTEKILKYL-DTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEP----LSHKIWELTGEGNQVKDNGSHEVL- 77 (292)
Q Consensus 4 ~~e~~iL~~L-~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~----~~~~~~~LTeEG~~yl~~GlPE~r- 77 (292)
..+..||..| ..++.++..++|+.+|+++..|.+.+..|+.+ |+|.... .-...+.||++|+.++..-.+...
T Consensus 37 ~~~~~iL~~l~~~~~~~t~~~la~~l~~s~~~vs~~l~~L~~~-glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~~~ 115 (146)
T 2fbh_A 37 QARWLVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLESQ-GLVRRLAVAEDRRAKHIVLTPKADVLIADIEAIAAS 115 (146)
T ss_dssp TTHHHHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEECCBTTBCSCEEEECTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHC-CCeeecCCCcccCeeeeEECHhHHHHHHHHHHHHHH
Confidence 4577899999 66777889999999999999999999999987 9998864 345678999999999877655543
Q ss_pred HHhhcCCCCCChHHHhh
Q psy10346 78 VFNNVPSEGIGQKELLA 94 (292)
Q Consensus 78 l~~~l~~~~~~~~el~~ 94 (292)
+...+- .+++-+|+..
T Consensus 116 ~~~~~~-~~l~~~e~~~ 131 (146)
T 2fbh_A 116 VRNDVL-TGIDESEQAL 131 (146)
T ss_dssp HHHHHT-TTCCHHHHHH
T ss_pred HHHHHH-cCCCHHHHHH
Confidence 222222 3455555443
No 19
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=97.59 E-value=0.00024 Score=57.58 Aligned_cols=88 Identities=10% Similarity=0.024 Sum_probs=67.8
Q ss_pred HHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEee----eeEEEEEeChhHHHHhhcCChHHHHH
Q psy10346 4 DLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEP----LSHKIWELTGEGNQVKDNGSHEVLVF 79 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~----~~~~~~~LTeEG~~yl~~GlPE~rl~ 79 (292)
..+..||..|...+.+...++|..++++...|.+.+..|+.+ |+|.... .-...+.||++|+.+++.-.+...-+
T Consensus 47 ~~~~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~-glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~~~~ 125 (153)
T 2pex_A 47 YPQYLVMLVLWETDERSVSEIGERLYLDSATLTPLLKRLQAA-GLVTRTRAASDERQVIIALTETGRALRSKAGAVPEQV 125 (153)
T ss_dssp HHHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEEC-------CEEEECHHHHHGGGGSTTHHHHH
T ss_pred HHHHHHHHHHHhCCCcCHHHHHHHhCCCcccHHHHHHHHHHC-CCEeecCCcccCCeeEeeECHHHHHHHHHHHHHHHHH
Confidence 567889999987777888999999999999999999999987 9998753 23456899999999998888766633
Q ss_pred hhcCCCCCChHHHhh
Q psy10346 80 NNVPSEGIGQKELLA 94 (292)
Q Consensus 80 ~~l~~~~~~~~el~~ 94 (292)
... .+++-+++..
T Consensus 126 ~~~--~~l~~~e~~~ 138 (153)
T 2pex_A 126 FCA--SACSLDELRQ 138 (153)
T ss_dssp HHH--HTCCHHHHHH
T ss_pred Hhc--cCCCHHHHHH
Confidence 322 3455555443
No 20
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=97.59 E-value=7.8e-05 Score=56.33 Aligned_cols=70 Identities=10% Similarity=0.064 Sum_probs=57.6
Q ss_pred cHHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEee----eeEEEEEeChhHHHHhhcCC
Q psy10346 3 SDLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEP----LSHKIWELTGEGNQVKDNGS 73 (292)
Q Consensus 3 ~~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~----~~~~~~~LTeEG~~yl~~Gl 73 (292)
.+.+.+||..|...+.....++|+.+|+++..|.+.++.|+.. |+|.... .....|.||++|.+.+..-.
T Consensus 15 ~~~~~~iL~~L~~~~~~~~~ela~~l~is~~tvs~~l~~L~~~-gli~~~~~~~~~r~~~~~lt~~g~~~~~~~~ 88 (100)
T 1ub9_A 15 NPVRLGIMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIRVLERN-GLVKTYKVIADRPRTVVEITDFGMEEAKRFL 88 (100)
T ss_dssp SHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHT-TSEEEEEECSSSCEEEEEECHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHhcCCcCHHHHHHHHCcCHHHHHHHHHHHHHC-CCEEEEecCCCcceEEEEECHHHHHHHHHHH
Confidence 4567889998865566788999999999999999999999987 9998644 45678999999987665433
No 21
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=97.58 E-value=0.0002 Score=59.02 Aligned_cols=89 Identities=12% Similarity=0.057 Sum_probs=69.2
Q ss_pred HHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeee----eEEEEEeChhHHHHhhcCChHHH-H
Q psy10346 4 DLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPL----SHKIWELTGEGNQVKDNGSHEVL-V 78 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~----~~~~~~LTeEG~~yl~~GlPE~r-l 78 (292)
..+..||..|...+.+...++|..+|+++..|.+.+..|+.+ |||..... -...+.||++|+++++.-.+... +
T Consensus 46 ~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~-Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~~~~~~~ 124 (162)
T 3k0l_A 46 LPQFTALSVLAAKPNLSNAKLAERSFIKPQSANKILQDLLAN-GWIEKAPDPTHGRRILVTVTPSGLDKLNQCNQVVQQL 124 (162)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHTSCGGGHHHHHHHHHHT-TSEEEEECCSSSCCEEEEECHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC-cCeEecCCCCcCCeeEeEECHhHHHHHHHHHHHHHHH
Confidence 567889999988788899999999999999999999999987 99987543 35678999999999987766554 2
Q ss_pred HhhcCCCCCChHHHhh
Q psy10346 79 FNNVPSEGIGQKELLA 94 (292)
Q Consensus 79 ~~~l~~~~~~~~el~~ 94 (292)
...+- .+++-+++..
T Consensus 125 ~~~~~-~~l~~~e~~~ 139 (162)
T 3k0l_A 125 EAQML-QGVDINLAFL 139 (162)
T ss_dssp HHHHT-TTSCHHHHHH
T ss_pred HHHHH-hCCCHHHHHH
Confidence 22221 3455555444
No 22
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=97.58 E-value=0.00011 Score=59.00 Aligned_cols=89 Identities=16% Similarity=0.173 Sum_probs=68.4
Q ss_pred HHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEee----eeEEEEEeChhHHHHhhcCChHHH-H
Q psy10346 4 DLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEP----LSHKIWELTGEGNQVKDNGSHEVL-V 78 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~----~~~~~~~LTeEG~~yl~~GlPE~r-l 78 (292)
..+..||..|...+.++..++|..+|+++..|.+.+..|+.+ |+|+... .-...+.||++|+++++.-.+... +
T Consensus 37 ~~~~~iL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~-Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~~~~~~~ 115 (143)
T 3oop_A 37 PEQWSVLEGIEANEPISQKEIALWTKKDTPTVNRIVDVLLRK-ELIVREISTEDRRISLLSLTDKGRKETTELRDIVEAS 115 (143)
T ss_dssp HHHHHHHHHHHHHSSEEHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEEC----CCSCEEEECHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHCCCHhhHHHHHHHHHHC-CCeeccCCCccCceeeeeECHHHHHHHHHHHHHHHHH
Confidence 568889999977777888999999999999999999999987 9998753 335678999999999987666655 2
Q ss_pred HhhcCCCCCChHHHhh
Q psy10346 79 FNNVPSEGIGQKELLA 94 (292)
Q Consensus 79 ~~~l~~~~~~~~el~~ 94 (292)
...+- .+++-+|+..
T Consensus 116 ~~~~~-~~l~~~e~~~ 130 (143)
T 3oop_A 116 CEKMF-AGVTRTDLEQ 130 (143)
T ss_dssp HHHHT-TTCCHHHHHH
T ss_pred HHHHH-cCCCHHHHHH
Confidence 22222 3455555443
No 23
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=97.57 E-value=0.00014 Score=58.23 Aligned_cols=87 Identities=16% Similarity=0.133 Sum_probs=69.1
Q ss_pred HHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEee----eeEEEEEeChhHHHHhhcCChHHHH-
Q psy10346 4 DLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEP----LSHKIWELTGEGNQVKDNGSHEVLV- 78 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~----~~~~~~~LTeEG~~yl~~GlPE~rl- 78 (292)
..+..||..|...+.++..++|+.+|++...|.+.+..|+.+ |+|.... .-...+.||++|+.++..-.+...-
T Consensus 37 ~~~~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~~-gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~~~~ 115 (142)
T 2bv6_A 37 YPQFLVLTILWDESPVNVKKVVTELALDTGTVSPLLKRMEQV-DLIKRERSEVDQREVFIHLTDKSETIRPELSNASDKV 115 (142)
T ss_dssp HHHHHHHHHHHHSSEEEHHHHHHHTTCCTTTHHHHHHHHHHT-TSEEEEECSSSTTCEEEEECHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHHC-CCEEeecCCCCcceEEEEEChHHHHHHHHHHHHHHHH
Confidence 567889999987777788999999999999999999999987 9998765 3456889999999999888776653
Q ss_pred HhhcCCCCCChHHHhh
Q psy10346 79 FNNVPSEGIGQKELLA 94 (292)
Q Consensus 79 ~~~l~~~~~~~~el~~ 94 (292)
...+ +++-+++..
T Consensus 116 ~~~~---~l~~~e~~~ 128 (142)
T 2bv6_A 116 ASAS---SLSQDEVKE 128 (142)
T ss_dssp HHHT---TCCHHHHHH
T ss_pred HHHh---CCCHHHHHH
Confidence 3333 555555443
No 24
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=97.57 E-value=0.00018 Score=57.26 Aligned_cols=89 Identities=18% Similarity=0.179 Sum_probs=66.9
Q ss_pred HHHHHHHHHhccCC--CCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEee----eeEEEEEeChhHHHHhhcCChHHH
Q psy10346 4 DLTEKILKYLDTNP--PVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEP----LSHKIWELTGEGNQVKDNGSHEVL 77 (292)
Q Consensus 4 ~~e~~iL~~L~~~~--~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~----~~~~~~~LTeEG~~yl~~GlPE~r 77 (292)
..+..||..|...+ .+...++|..+|+++..|.+.++.|+.+ |+|.... .-...+.||++|+.++..-.+...
T Consensus 34 ~~~~~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~-Gli~r~~~~~d~R~~~i~lT~~G~~~~~~~~~~~~ 112 (141)
T 3bro_A 34 GTQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIK-KLLYRKVSGKDSRQKCLKLTKKANKLETIILSYMD 112 (141)
T ss_dssp HHHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEEECSSCTTSEEEEECHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHHC-CCEEeeCCCcCCCeeeeEECHHHHHHHHHHHHHHH
Confidence 46788999997665 6888999999999999999999999987 9998764 234578999999998877666544
Q ss_pred -HHhhcCCCCCChHHHhh
Q psy10346 78 -VFNNVPSEGIGQKELLA 94 (292)
Q Consensus 78 -l~~~l~~~~~~~~el~~ 94 (292)
+...+- .+++-+++..
T Consensus 113 ~~~~~~~-~~l~~~e~~~ 129 (141)
T 3bro_A 113 SDQSQMT-SGLNKEEVVF 129 (141)
T ss_dssp HHHHHHT-TTCCHHHHHH
T ss_pred HHHHHHH-hcCCHHHHHH
Confidence 222222 3455555433
No 25
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=97.57 E-value=8.1e-05 Score=59.90 Aligned_cols=65 Identities=14% Similarity=0.167 Sum_probs=57.1
Q ss_pred cHHHHHHHHHhccCCCCChHHHHHhc--CCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeChhHHHHhh
Q psy10346 3 SDLTEKILKYLDTNPPVDTLDLAKLF--NEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELTGEGNQVKD 70 (292)
Q Consensus 3 ~~~e~~iL~~L~~~~~~~~~ela~~~--~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LTeEG~~yl~ 70 (292)
.....+||..|..++.....++|... |++...|.+-++.|+.. |+|+....- .|.||++|++++.
T Consensus 12 d~~d~~IL~~L~~~g~~s~~eLA~~l~~giS~~aVs~rL~~Le~~-GLV~~~~rg--~Y~LT~~G~~~l~ 78 (111)
T 3b73_A 12 TIWDDRILEIIHEEGNGSPKELEDRDEIRISKSSVSRRLKKLADH-DLLQPLANG--VYVITEEGEAYLN 78 (111)
T ss_dssp CHHHHHHHHHHHHHSCBCHHHHHTSTTCCSCHHHHHHHHHHHHHT-TSEEECSTT--CEEECHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHC-CCEEecCCc--eEEECchHHHHHH
Confidence 35688999999877788999999999 99999999999999987 999976433 8999999998874
No 26
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=97.56 E-value=7.2e-05 Score=56.88 Aligned_cols=65 Identities=22% Similarity=0.282 Sum_probs=56.9
Q ss_pred HHHHHHHHHhccCCCCChHHHHHhcCCCHH-HHHHHHHHhhccCCcEEEeeeeEEEEEeChhHHHHh
Q psy10346 4 DLTEKILKYLDTNPPVDTLDLAKLFNEDHQ-KVVGGMKSIETLGEYLIVEPLSHKIWELTGEGNQVK 69 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~~~~ela~~~~~~~~-~v~~~~~~L~s~~glv~~e~~~~~~~~LTeEG~~yl 69 (292)
+.+.+||.+|...+.....++|+.+|++.. +|-+.+..|+.. |+|.....-.-.|.||+.|++.+
T Consensus 11 ~~~~~IL~~Lk~~g~~ta~eiA~~Lgit~~~aVr~hL~~Le~e-GlV~~~~~gRP~w~LT~~g~~~~ 76 (79)
T 1xmk_A 11 EIKEKICDYLFNVSDSSALNLAKNIGLTKARDINAVLIDMERQ-GDVYRQGTTPPIWHLTDKKRERM 76 (79)
T ss_dssp HHHHHHHHHHHHTCCEEHHHHHHHHCGGGHHHHHHHHHHHHHT-TSEEEECSSSCEEEECHHHHTTT
T ss_pred hHHHHHHHHHHHcCCcCHHHHHHHcCCCcHHHHHHHHHHHHHC-CCEEecCCCCCCeEeCHhHHhHh
Confidence 568899999999999899999999999999 999999999986 99986544445999999998754
No 27
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=97.55 E-value=7.8e-05 Score=75.30 Aligned_cols=61 Identities=25% Similarity=0.201 Sum_probs=52.8
Q ss_pred CCCCCCChHHHHHHHHHHHhhhCCceecCCCCccccceeccccCCCCCCCCCCCCCCceeecCCCCC
Q psy10346 215 LPSGHLHPLMKVRAEFRQIFLDMGFTEMPTNNFVESSFWNFDALFQPQQHPARDAHDTFFVTDPKTS 281 (292)
Q Consensus 215 ~~~g~~Hpl~~~~~~i~~if~~mGF~e~~~~~~Ves~f~NFD~L~~PqdHPAR~~~DTfyl~~~~~~ 281 (292)
...|..||..++++.+|++|.++||.|+-+.+ .++..||||+|++|.+| +|+++|.+|-+.
T Consensus 385 ~~~g~~~~~~~~~~~ir~~l~~~Gf~Evitys-f~s~~~~~~~l~~~~~~-----~~~v~L~NPis~ 445 (589)
T 3l4g_B 385 YTIANQFPLNKLTELLRHDMAAAGFTEALTFA-LCSQEDIADKLGVDISA-----TKAVHISNPKTA 445 (589)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHTTCEECCCCS-EECHHHHTGGGTSCTTS-----SCCCBBSSCSSG
T ss_pred cccCCCCHHHHHHHHHHHHHHHCCCEEEecCc-ccCHHHHHHHhCCCCCC-----CCeEEEcCCCch
Confidence 45688999999999999999999999987554 56888999999999988 489999988543
No 28
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=97.54 E-value=0.00018 Score=57.14 Aligned_cols=72 Identities=14% Similarity=0.094 Sum_probs=60.2
Q ss_pred HHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEee----eeEEEEEeChhHHHHhhcCChHH
Q psy10346 4 DLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEP----LSHKIWELTGEGNQVKDNGSHEV 76 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~----~~~~~~~LTeEG~~yl~~GlPE~ 76 (292)
..+..||..|...+.++..++|+.+|+++..|.+.+..|+.+ |+|.... .-...+.||+.|++++..-.+..
T Consensus 36 ~~~~~iL~~l~~~~~~t~~ela~~l~~s~~~vs~~l~~Le~~-glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~ 111 (142)
T 2fbi_A 36 EQQWRVIRILRQQGEMESYQLANQACILRPSMTGVLARLERD-GIVRRWKAPKDQRRVYVNLTEKGQQCFVSMSGDM 111 (142)
T ss_dssp HHHHHHHHHHHHHCSEEHHHHHHHTTCCHHHHHHHHHHHHHT-TSEEEEEETTEEEEEEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCCCHhHHHHHHHHHHHC-CCEEeecCCCCCCeeEEEECHHHHHHHHHHHHHH
Confidence 567889999977667888999999999999999999999987 9998753 34567899999999987655543
No 29
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=97.53 E-value=0.00023 Score=56.80 Aligned_cols=72 Identities=21% Similarity=0.220 Sum_probs=60.4
Q ss_pred HHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEee----eeEEEEEeChhHHHHhhcCChHH
Q psy10346 4 DLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEP----LSHKIWELTGEGNQVKDNGSHEV 76 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~----~~~~~~~LTeEG~~yl~~GlPE~ 76 (292)
..+..||..|...+.++..++|..+|+++..|.+.+..|+.+ |+|+... .-...+.||++|+.++..-.+..
T Consensus 33 ~~~~~iL~~l~~~~~~~~~~la~~l~~s~~tvs~~l~~L~~~-glv~r~~~~~d~r~~~~~lT~~G~~~~~~~~~~~ 108 (145)
T 2a61_A 33 PAQFDILQKIYFEGPKRPGELSVLLGVAKSTVTGLVKRLEAD-GYLTRTPDPADRRAYFLVITRKGEEVIEKVIERR 108 (145)
T ss_dssp HHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEEEETTEEEEEEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHHHC-CCeeecCCCCCCceEEEEECHHHHHHHHHHHHHH
Confidence 567889999977677889999999999999999999999987 9998853 44567899999999986655443
No 30
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=97.53 E-value=0.00015 Score=57.64 Aligned_cols=73 Identities=14% Similarity=0.127 Sum_probs=61.6
Q ss_pred HHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEee----eeEEEEEeChhHHHHhhcCChHHH
Q psy10346 4 DLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEP----LSHKIWELTGEGNQVKDNGSHEVL 77 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~----~~~~~~~LTeEG~~yl~~GlPE~r 77 (292)
..+..||..|...+.+...++|..+|+++..|.+.++.|+.+ |+|.... .-...+.||++|++++..-.+...
T Consensus 34 ~~~~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~~~-gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~~ 110 (138)
T 1jgs_A 34 AAQFKVLCSIRCAACITPVELKKVLSVDLGALTRMLDRLVCK-GWVERLPNPNDKRGVLVKLTTGGAAICEQCHQLVG 110 (138)
T ss_dssp HHHHHHHHHHHHHSSBCHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEEECTTCSSCEEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHCCChHHHHHHHHHHHHC-CCEEecCCcccCceeEeEEChhHHHHHHHHHHHHH
Confidence 567889999977677888999999999999999999999987 9998753 235678999999999987777653
No 31
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=97.51 E-value=0.00018 Score=57.86 Aligned_cols=73 Identities=8% Similarity=-0.023 Sum_probs=60.7
Q ss_pred HHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEee----eeEEEEEeChhHHHHhhcCChHHH
Q psy10346 4 DLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEP----LSHKIWELTGEGNQVKDNGSHEVL 77 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~----~~~~~~~LTeEG~~yl~~GlPE~r 77 (292)
..+..||..|...+.+...++|+.+|+++..|.+.+..|+.+ |+|.... .-...+.||++|++++..-.+...
T Consensus 42 ~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~-Glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~~ 118 (150)
T 2rdp_A 42 PPQFVALQWLLEEGDLTVGELSNKMYLACSTTTDLVDRMERN-GLVARVRDEHDRRVVRIRLLEKGERIIEEVIEKRQ 118 (150)
T ss_dssp HHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEEECCC---CEEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHHHC-CCeeecCCCCCcceeEeEECHhHHHHHHHHHHHHH
Confidence 567889999977677888999999999999999999999987 9998753 345678999999999877666544
No 32
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=97.50 E-value=0.00022 Score=58.14 Aligned_cols=73 Identities=14% Similarity=0.113 Sum_probs=61.4
Q ss_pred HHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEee----eeEEEEEeChhHHHHhhcCChHHH
Q psy10346 4 DLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEP----LSHKIWELTGEGNQVKDNGSHEVL 77 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~----~~~~~~~LTeEG~~yl~~GlPE~r 77 (292)
..+..||..|...+.+...++|+.+|++...|.+.+..|+.+ |+|+... .-...+.||++|+.++..-.+...
T Consensus 44 ~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~-Gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~~ 120 (154)
T 2eth_A 44 TTELYAFLYVALFGPKKMKEIAEFLSTTKSNVTNVVDSLEKR-GLVVREMDPVDRRTYRVVLTEKGKEIFGEILSNFE 120 (154)
T ss_dssp HHHHHHHHHHHHHCCBCHHHHHHHTTSCHHHHHHHHHHHHHT-TSEEEEECTTTSSCEEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHC-CCEEeeCCCCCcceeEEEECHHHHHHHHHHHHHHH
Confidence 567889999977667888999999999999999999999987 9998764 235678999999999877655544
No 33
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=97.50 E-value=0.00022 Score=56.80 Aligned_cols=73 Identities=16% Similarity=0.131 Sum_probs=60.7
Q ss_pred HHHHHHHHHhccCC--CCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEee----eeEEEEEeChhHHHHhhcCChHHH
Q psy10346 4 DLTEKILKYLDTNP--PVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEP----LSHKIWELTGEGNQVKDNGSHEVL 77 (292)
Q Consensus 4 ~~e~~iL~~L~~~~--~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~----~~~~~~~LTeEG~~yl~~GlPE~r 77 (292)
..+..||..|...+ .++..++|..+|+++..|.+.+..|+.+ |+|.... .-...+.||++|+++++.-.+...
T Consensus 31 ~~~~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~-Gli~r~~~~~D~R~~~~~LT~~G~~~~~~~~~~~~ 109 (139)
T 3eco_A 31 NEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERK-KLIYRYVDAQDTRRKNIGLTTSGIKLVEAFTSIFD 109 (139)
T ss_dssp HHHHHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEEECCC--CCEEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHHC-CCEeecCCCCCCCeeeeEECHHHHHHHHHHHHHHH
Confidence 56888999997654 6788999999999999999999999987 9998764 335778999999999976665544
No 34
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=97.49 E-value=0.00023 Score=58.26 Aligned_cols=89 Identities=15% Similarity=0.078 Sum_probs=67.7
Q ss_pred HHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEee----eeEEEEEeChhHHHHhhcCChHHH-H
Q psy10346 4 DLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEP----LSHKIWELTGEGNQVKDNGSHEVL-V 78 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~----~~~~~~~LTeEG~~yl~~GlPE~r-l 78 (292)
..+..||..|...+.+...++|+.+|++...|.+.+..|+.+ |+|.... .-...+.||++|+.++..-.+... +
T Consensus 52 ~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~-Gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~~~~ 130 (162)
T 3cjn_A 52 TAKMRALAILSAKDGLPIGTLGIFAVVEQSTLSRALDGLQAD-GLVRREVDSDDQRSSRVYLTPAGRAVYDRLWPHMRAS 130 (162)
T ss_dssp HHHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEEEC--CCSSEEEEECHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCChhHHHHHHHHHHHC-CCEEecCCCCCCCeeEEEECHHHHHHHHHHHHHHHHH
Confidence 467889999987777888999999999999999999999987 9998753 334678999999999877666554 2
Q ss_pred HhhcCCCCCChHHHhh
Q psy10346 79 FNNVPSEGIGQKELLA 94 (292)
Q Consensus 79 ~~~l~~~~~~~~el~~ 94 (292)
...+- .+++-+++..
T Consensus 131 ~~~~~-~~l~~~e~~~ 145 (162)
T 3cjn_A 131 HDRMF-QGITPQERQA 145 (162)
T ss_dssp HHHHT-TTCCHHHHHH
T ss_pred HHHHH-hcCCHHHHHH
Confidence 22222 3455555443
No 35
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=97.49 E-value=0.00022 Score=57.02 Aligned_cols=89 Identities=17% Similarity=0.112 Sum_probs=67.5
Q ss_pred HHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEee----eeEEEEEeChhHHHHhhcCChHHH-H
Q psy10346 4 DLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEP----LSHKIWELTGEGNQVKDNGSHEVL-V 78 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~----~~~~~~~LTeEG~~yl~~GlPE~r-l 78 (292)
..+..||..|...+.++..++|..+|+++..|.+.+..|+.+ |+|.... .-...+.||++|+.++..-.+... +
T Consensus 29 ~~~~~iL~~l~~~~~~t~~~la~~l~~s~~~vs~~l~~Le~~-gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~~~~ 107 (144)
T 1lj9_A 29 RGQYLYLVRVCENPGIIQEKIAELIKVDRTTAARAIKRLEEQ-GFIYRQEDASNKKIKRIYATEKGKNVYPIIVRENQHS 107 (144)
T ss_dssp TTHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEEECSSCTTCEEEEECHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCcCHHHHHHHHCCCHhHHHHHHHHHHHC-CCEEeecCCCCCceeeeEEChhHHHHHHHHHHHHHHH
Confidence 457789999977777788999999999999999999999987 9998864 335678999999999977666554 2
Q ss_pred HhhcCCCCCChHHHhh
Q psy10346 79 FNNVPSEGIGQKELLA 94 (292)
Q Consensus 79 ~~~l~~~~~~~~el~~ 94 (292)
...+- .+++-+++..
T Consensus 108 ~~~~~-~~l~~~e~~~ 122 (144)
T 1lj9_A 108 NQVAL-QGLSEVEISQ 122 (144)
T ss_dssp HHHHT-TTCCHHHHHH
T ss_pred HHHHH-hcCCHHHHHH
Confidence 22221 3455554443
No 36
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=97.48 E-value=0.00014 Score=58.48 Aligned_cols=73 Identities=16% Similarity=0.212 Sum_probs=59.4
Q ss_pred HHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEee----eeEEEEEeChhHHHHhhcCChHHH
Q psy10346 4 DLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEP----LSHKIWELTGEGNQVKDNGSHEVL 77 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~----~~~~~~~LTeEG~~yl~~GlPE~r 77 (292)
..+..||..|...+.++..++|..+|+++..|.+.+..|+.+ |+|..+. .-...+.||++|+.+++.-.+...
T Consensus 40 ~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~-Glv~r~~~~~D~R~~~~~lT~~G~~~~~~~~~~~~ 116 (148)
T 3nrv_A 40 MTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEK-KYIEVNGHSEDKRTYAINLTEMGQELYEVASDFAI 116 (148)
T ss_dssp HHHHHHHHHHHHSSSBCHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEC---------CCBEECHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC-CCEEeecCCCCcceeEeEECHhHHHHHHHHHHHHH
Confidence 567889999987778889999999999999999999999987 9998653 235678999999999877655543
No 37
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=97.48 E-value=0.00017 Score=56.77 Aligned_cols=69 Identities=12% Similarity=0.093 Sum_probs=59.8
Q ss_pred HHHHHHHHHhccCCCCChHHHHH-hcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeChhHHHHhhcCChHH
Q psy10346 4 DLTEKILKYLDTNPPVDTLDLAK-LFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELTGEGNQVKDNGSHEV 76 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~~~~ela~-~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LTeEG~~yl~~GlPE~ 76 (292)
..|..||..|...+.....++|. ..+++.+.|.+.++.|+.+ |||. ..... +.||++|+..++.|.|-.
T Consensus 16 ~~QfsiL~~L~~~~~~t~~~Lae~~l~~drstvsrnl~~L~r~-GlVe-~~~~D--l~LT~~G~~~l~~a~~~W 85 (95)
T 1bja_A 16 EKTATILITIAKKDFITAAEVREVHPDLGNAVVNSNIGVLIKK-GLVE-KSGDG--LIITGEAQDIISNAATLY 85 (95)
T ss_dssp HHHHHHHHHHHHSTTBCHHHHHHTCTTSCHHHHHHHHHHHHTT-TSEE-EETTE--EEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHhcccHHHHHHHHHHHHHC-CCee-cCCCC--eeeCHhHHHHHHHHHHHH
Confidence 56889999998888888899999 9999999999999999986 9999 33332 999999999999888754
No 38
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=97.47 E-value=0.00013 Score=59.28 Aligned_cols=88 Identities=14% Similarity=0.174 Sum_probs=65.6
Q ss_pred HHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEee------eeEEEEEeChhHHHHhhcCChHHH
Q psy10346 4 DLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEP------LSHKIWELTGEGNQVKDNGSHEVL 77 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~------~~~~~~~LTeEG~~yl~~GlPE~r 77 (292)
..+..||..| ..+.++..++|+.+|+++.+|.+.+..|+.+ |+|..+. .-...+.||++|+.++..-.+...
T Consensus 38 ~~q~~iL~~l-~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~-Glv~r~~~~~~~D~R~~~~~lT~~G~~~~~~~~~~~~ 115 (151)
T 3kp7_A 38 AEQSHVLNML-SIEALTVGQITEKQGVNKAAVSRRVKKLLNA-ELVKLEKPDSNTDQRLKIIKLSNKGKKYIKERKAIMS 115 (151)
T ss_dssp HHHHHHHHHH-HHSCBCHHHHHHHHCSCSSHHHHHHHHHHHT-TSEEC-----------CCBEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HcCCcCHHHHHHHHCCCHHHHHHHHHHHHHC-CCEEeeCCCCCCCCCeeEEEECHhHHHHHHHHHHHHH
Confidence 5678899999 7788899999999999999999999999987 9999643 445567999999999877666654
Q ss_pred -HHhhcCCCCCChHHHhh
Q psy10346 78 -VFNNVPSEGIGQKELLA 94 (292)
Q Consensus 78 -l~~~l~~~~~~~~el~~ 94 (292)
+...+- .+++-+|+..
T Consensus 116 ~~~~~~~-~~l~~~e~~~ 132 (151)
T 3kp7_A 116 HIASDMT-SDFDSKEIEK 132 (151)
T ss_dssp HHHHHTT-TTSCHHHHHH
T ss_pred HHHHHHH-hcCCHHHHHH
Confidence 223322 3455555443
No 39
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=97.47 E-value=0.00018 Score=57.67 Aligned_cols=69 Identities=19% Similarity=0.257 Sum_probs=57.2
Q ss_pred cHHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEee----eeEEEEEeChhHHHHhhcCC
Q psy10346 3 SDLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEP----LSHKIWELTGEGNQVKDNGS 73 (292)
Q Consensus 3 ~~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~----~~~~~~~LTeEG~~yl~~Gl 73 (292)
...+..||..|..++ ++..++|..+|+++..|.+.+..|+.+ |||.... .-...+.||+.|+.++....
T Consensus 37 t~~~~~iL~~l~~~~-~t~~eLa~~l~~s~~tvs~~l~~L~~~-Glv~r~~~~~d~R~~~~~lT~~g~~~~~~~~ 109 (146)
T 3tgn_A 37 TNTQEHILMLLSEES-LTNSELARRLNVSQAAVTKAIKSLVKE-GMLETSKDSKDARVIFYQLTDLARPIAEEHH 109 (146)
T ss_dssp CHHHHHHHHHHTTCC-CCHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEC----------CCEECGGGHHHHHHHH
T ss_pred CHHHHHHHHHHHhCC-CCHHHHHHHHCCCHHHHHHHHHHHHHC-CCeEeccCCCCCceeEEEECHhHHHHHHHHH
Confidence 367889999998877 899999999999999999999999987 9998754 44567899999999987775
No 40
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=97.47 E-value=0.00016 Score=59.20 Aligned_cols=73 Identities=11% Similarity=0.074 Sum_probs=60.7
Q ss_pred HHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEee----eeEEEEEeChhHHHHhhcCChHHH
Q psy10346 4 DLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEP----LSHKIWELTGEGNQVKDNGSHEVL 77 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~----~~~~~~~LTeEG~~yl~~GlPE~r 77 (292)
..|..||..|...+.+...++|..+|+++..|.+.+..|+.+ |||.... .-...+.||++|++++..-.+...
T Consensus 50 ~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~-Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~~~~~ 126 (159)
T 3s2w_A 50 SGQFPFLMRLYREDGINQESLSDYLKIDKGTTARAIQKLVDE-GYVFRQRDEKDRRSYRVFLTEKGKKLEPDMKKIAS 126 (159)
T ss_dssp TTTHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEEECC---CCEEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC-CCEEEecCCCCCCeeEEEECHHHHHHHHHHHHHHH
Confidence 346788999977777888999999999999999999999987 9998764 235678999999999977666554
No 41
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=97.45 E-value=0.00032 Score=56.21 Aligned_cols=73 Identities=12% Similarity=0.046 Sum_probs=60.0
Q ss_pred HHHHHHHHHhcc-CCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEee----eeEEEEEeChhHHHHhhcCChHHH
Q psy10346 4 DLTEKILKYLDT-NPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEP----LSHKIWELTGEGNQVKDNGSHEVL 77 (292)
Q Consensus 4 ~~e~~iL~~L~~-~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~----~~~~~~~LTeEG~~yl~~GlPE~r 77 (292)
..+..||..|.. .+.+...++|..+|+++..|.+.+..|+.+ |+|.... .-...+.||++|+.++..-.+...
T Consensus 35 ~~~~~iL~~l~~~~~~~~~~~la~~l~i~~~~vs~~l~~Le~~-glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~~ 112 (147)
T 2hr3_A 35 FSQLVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELERG-GLIVRHADPQDGRRTRVSLSSEGRRNLYGNRAKRE 112 (147)
T ss_dssp HHHHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHHT-TSEEEEC------CCEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHC-CCEeeCCCCCCCCceeeEECHHHHHHHHHHHHHHH
Confidence 467889999987 777889999999999999999999999987 9998753 234568999999998876655443
No 42
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=97.44 E-value=0.00032 Score=56.27 Aligned_cols=72 Identities=19% Similarity=0.156 Sum_probs=60.2
Q ss_pred HHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEee----eeEEEEEeChhHHHHhhcCChHHH
Q psy10346 4 DLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEP----LSHKIWELTGEGNQVKDNGSHEVL 77 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~----~~~~~~~LTeEG~~yl~~GlPE~r 77 (292)
..+..||..|..++. ...++|..+|+++..|.+.+..|+.+ |+|.... .-...+.||++|+.++....+...
T Consensus 37 ~~~~~iL~~l~~~~~-~~~~la~~l~~~~~tvs~~l~~Le~~-Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~~~~~ 112 (144)
T 3f3x_A 37 YLDFSILKATSEEPR-SMVYLANRYFVTQSAITAAVDKLEAK-GLVRRIRDSKDRRIVIVEITPKGRQVLLEANEVLR 112 (144)
T ss_dssp HHHHHHHHHHHHSCE-EHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEEEETTEEEEEEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC-CHHHHHHHHCCChhHHHHHHHHHHHC-CCEEeccCCCCCceEEEEECHHHHHHHHHHHHHHH
Confidence 567889999987766 78999999999999999999999987 9998764 334578999999999877665544
No 43
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=97.43 E-value=0.00019 Score=56.85 Aligned_cols=73 Identities=12% Similarity=0.124 Sum_probs=61.4
Q ss_pred HHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEee----eeEEEEEeChhHHHHhhcCChHHH
Q psy10346 4 DLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEP----LSHKIWELTGEGNQVKDNGSHEVL 77 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~----~~~~~~~LTeEG~~yl~~GlPE~r 77 (292)
..+..||..|...+.+...++|+.+|+++..|.+.+..|+.+ |+|.... .-...+.||+.|++++..-.+...
T Consensus 33 ~~~~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~~-gli~r~~~~~d~r~~~~~lT~~G~~~~~~~~~~~~ 109 (139)
T 3bja_A 33 YVQFGVIQVLAKSGKVSMSKLIENMGCVPSNMTTMIQRMKRD-GYVMTEKNPNDQRETLVYLTKKGEETKKQVDVQYS 109 (139)
T ss_dssp HHHHHHHHHHHHSCSEEHHHHHHHCSSCCTTHHHHHHHHHHT-TSEEEEECSSCTTCEEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHCCChhHHHHHHHHHHHC-CCeeeccCCCCCceeEEEECHHHHHHHHHHHHHHH
Confidence 567889999987777888999999999999999999999987 9998753 335678999999999877665543
No 44
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=97.41 E-value=0.00024 Score=57.14 Aligned_cols=73 Identities=11% Similarity=-0.001 Sum_probs=57.6
Q ss_pred HHHHHHHHHhc----cCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeChhHHHHhhcCChHHHHH
Q psy10346 4 DLTEKILKYLD----TNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELTGEGNQVKDNGSHEVLVF 79 (292)
Q Consensus 4 ~~e~~iL~~L~----~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LTeEG~~yl~~GlPE~rl~ 79 (292)
..+..+|..|. .++.....++|+.+|++...|.+.++.|+.+ |+|.... ..|.||+.|++++..-.+..+++
T Consensus 13 ~~~~~~L~~l~~l~~~~~~~s~~ela~~l~is~~tv~~~l~~Le~~-Gli~r~~---~~~~Lt~~g~~~~~~~~~~~~~~ 88 (139)
T 2x4h_A 13 RREFSYLLTIKRYNDSGEGAKINRIAKDLKIAPSSVFEEVSHLEEK-GLVKKKE---DGVWITNNGTRSINYLIKAHRVI 88 (139)
T ss_dssp HHHHHHHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEET---TEEEECHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCcCHHHHHHHhCCChHHHHHHHHHHHHC-CCEEecC---CeEEEChhHHHHHHHHHHHHHHH
Confidence 45566666553 3556788999999999999999999999987 9998765 57999999999887666655444
Q ss_pred h
Q psy10346 80 N 80 (292)
Q Consensus 80 ~ 80 (292)
.
T Consensus 89 ~ 89 (139)
T 2x4h_A 89 E 89 (139)
T ss_dssp H
T ss_pred H
Confidence 3
No 45
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=97.41 E-value=0.0002 Score=58.57 Aligned_cols=73 Identities=14% Similarity=0.115 Sum_probs=59.3
Q ss_pred HHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEee----eeEEEEEeChhHHHHhhcCChHHH
Q psy10346 4 DLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEP----LSHKIWELTGEGNQVKDNGSHEVL 77 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~----~~~~~~~LTeEG~~yl~~GlPE~r 77 (292)
..+..||..|...+.+...++|..+|+++..|.+.+..|+.+ |||.... .-...+.||++|+.++....+...
T Consensus 49 ~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~-glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~~ 125 (162)
T 2fa5_A 49 IPEWRVITILALYPGSSASEVSDRTAMDKVAVSRAVARLLER-GFIRRETHGDDRRRSMLALSPAGRQVYETVAPLVN 125 (162)
T ss_dssp HHHHHHHHHHHHSTTCCHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEC---------CCCEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC-CCEeeecCCCCCCeeEEEECHHHHHHHHHHHHHHH
Confidence 467889999987778889999999999999999999999987 9998643 223568999999999977666554
No 46
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=97.41 E-value=0.00012 Score=58.98 Aligned_cols=73 Identities=14% Similarity=0.073 Sum_probs=61.2
Q ss_pred HHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeee----eEEEEEeChhHHHHhhcCChHHH
Q psy10346 4 DLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPL----SHKIWELTGEGNQVKDNGSHEVL 77 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~----~~~~~~LTeEG~~yl~~GlPE~r 77 (292)
..+..||..|...+.+...++|..+|+++..|.+.+..|+.+ |+|..... -...+.||++|+++++.-.+...
T Consensus 31 ~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~-Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~~~~~ 107 (145)
T 3g3z_A 31 YNLFAVLYTLATEGSRTQKHIGEKWSLPKQTVSGVCKTLAGQ-GLIEWQEGEQDRRKRLLSLTETGKAYAAPLTESAQ 107 (145)
T ss_dssp HHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEECCCSSCGGGSCEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC-CCEeeccCCCCCceeeeeEChhHHHHHHHHHHHHH
Confidence 567889999977677889999999999999999999999987 99987433 35679999999998876665554
No 47
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=97.41 E-value=0.00015 Score=58.69 Aligned_cols=71 Identities=10% Similarity=0.180 Sum_probs=59.9
Q ss_pred HHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEE--e----eeeEEEEEeChhHHHHhhcCChH
Q psy10346 4 DLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIV--E----PLSHKIWELTGEGNQVKDNGSHE 75 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~--e----~~~~~~~~LTeEG~~yl~~GlPE 75 (292)
..+..||..|...+.++..++|+.+|+++..|.+.+..|+.+ |+|.. . ..-...+.||++|+.+++.-.+.
T Consensus 41 ~~~~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~-Glv~r~~~~~~~d~R~~~~~LT~~G~~~~~~~~~~ 117 (154)
T 2qww_A 41 IQQLAMINVIYSTPGISVADLTKRLIITGSSAAANVDGLISL-GLVVKLNKTIPNDSMDLTLKLSKKGEDLSKRSTAN 117 (154)
T ss_dssp HHHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEESCC--CTTCTTCEEEECHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC-CCEEecCcCCCCCCceeEeEECHHHHHHHHHHHhh
Confidence 567889999987777888999999999999999999999987 99987 2 23345789999999998766555
No 48
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=97.40 E-value=0.00023 Score=57.03 Aligned_cols=87 Identities=11% Similarity=0.060 Sum_probs=68.6
Q ss_pred HHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeee----eEEEEEeChhHHHHhhcCChHHH-H
Q psy10346 4 DLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPL----SHKIWELTGEGNQVKDNGSHEVL-V 78 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~----~~~~~~LTeEG~~yl~~GlPE~r-l 78 (292)
..+..||..|...+.+...++|+.+|+++..|.+.+..|+.+ |+|..... -...+.||++|+.++..-.+... +
T Consensus 40 ~~~~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~~~-glv~r~~~~~d~R~~~~~LT~~G~~~~~~~~~~~~~~ 118 (147)
T 1z91_A 40 YPQYLALLLLWEHETLTVKKMGEQLYLDSGTLTPMLKRMEQQ-GLITRKRSEEDERSVLISLTEDGALLKEKAVDIPGTI 118 (147)
T ss_dssp HHHHHHHHHHHHHSEEEHHHHHHTTTCCHHHHHHHHHHHHHH-TSEECCBCSSCTTSBEEEECHHHHSGGGGTTTHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCcCcHHHHHHHHHHC-CCEEeccCCCCCCeeEEEECHhHHHHHHHHHHHHHHH
Confidence 567889999976667788999999999999999999999987 99987542 35678999999999988887765 4
Q ss_pred HhhcCCCCCChHHHhh
Q psy10346 79 FNNVPSEGIGQKELLA 94 (292)
Q Consensus 79 ~~~l~~~~~~~~el~~ 94 (292)
...+ +++-+++..
T Consensus 119 ~~~~---~l~~~e~~~ 131 (147)
T 1z91_A 119 LGLS---KQSGEDLKQ 131 (147)
T ss_dssp HHHT---CCCTHHHHH
T ss_pred HHHc---CCCHHHHHH
Confidence 4444 555555443
No 49
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=97.40 E-value=0.00021 Score=57.70 Aligned_cols=73 Identities=12% Similarity=0.104 Sum_probs=61.3
Q ss_pred HHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEee----eeEEEEEeChhHHHHhhcCChHHH
Q psy10346 4 DLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEP----LSHKIWELTGEGNQVKDNGSHEVL 77 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~----~~~~~~~LTeEG~~yl~~GlPE~r 77 (292)
..+..||..|...+.+...++|+.+|+++..|.+.+..|+.+ |+|.... .-...+.||+.|++++..-.+...
T Consensus 40 ~~~~~iL~~l~~~~~~t~~ela~~l~~~~~~vs~~l~~Le~~-Glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~~ 116 (152)
T 3bj6_A 40 VGQRAILEGLSLTPGATAPQLGAALQMKRQYISRILQEVQRA-GLIERRTNPEHARSHRYWLTPRGEAIITAIRADEM 116 (152)
T ss_dssp HHHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEECCSSSTTSCEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC-CCeeecCCcccccceeeEEChhhHHHHHHHHHHHH
Confidence 567889999987777888999999999999999999999987 9998754 334578999999999877655544
No 50
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=97.39 E-value=0.00018 Score=59.18 Aligned_cols=89 Identities=11% Similarity=0.033 Sum_probs=67.3
Q ss_pred HHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeee----eEEEEEeChhHHHHhhcCChHHH-H
Q psy10346 4 DLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPL----SHKIWELTGEGNQVKDNGSHEVL-V 78 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~----~~~~~~LTeEG~~yl~~GlPE~r-l 78 (292)
..+..||..|...+.+...++|..+|+++..|.+.+..|+.+ |||..+.. -...+.||++|+++++.-.+... +
T Consensus 53 ~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~-Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~~~~~~~~ 131 (161)
T 3e6m_A 53 TPKLRLLSSLSAYGELTVGQLATLGVMEQSTTSRTVDQLVDE-GLAARSISDADQRKRTVVLTRKGKKKLAEISPLINDF 131 (161)
T ss_dssp HHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHT-TSEEECC---CCCSCEEEECHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC-CCEEeeCCcccCCeeEeeECHHHHHHHHHHHHHHHHH
Confidence 457889999977667788999999999999999999999987 99987543 34678999999999987766554 2
Q ss_pred HhhcCCCCCChHHHhh
Q psy10346 79 FNNVPSEGIGQKELLA 94 (292)
Q Consensus 79 ~~~l~~~~~~~~el~~ 94 (292)
...+- .+++-+|+..
T Consensus 132 ~~~~~-~~l~~~e~~~ 146 (161)
T 3e6m_A 132 HAELV-GNVDPDKLQT 146 (161)
T ss_dssp HHHHH-TTCCHHHHHH
T ss_pred HHHHH-hcCCHHHHHH
Confidence 22221 3455555443
No 51
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=97.39 E-value=0.00019 Score=57.61 Aligned_cols=73 Identities=16% Similarity=0.155 Sum_probs=56.0
Q ss_pred HHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeee----eEEEEEeChhHHHHhhcCChHHH
Q psy10346 4 DLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPL----SHKIWELTGEGNQVKDNGSHEVL 77 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~----~~~~~~LTeEG~~yl~~GlPE~r 77 (292)
..+..||..|...+.++..++|..+|+++..|.+.+..|+.+ |+|+.... -...+.||++|++++..-.+...
T Consensus 37 ~~~~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~-Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~~~~~~ 113 (142)
T 3ech_A 37 PPDVHVLKLIDEQRGLNLQDLGRQMCRDKALITRKIRELEGR-NLVRRERNPSDQRSFQLFLTDEGLAIHLHAELIMS 113 (142)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHC---CHHHHHHHHHHHT-TSEEC----------CCEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcCHHHHHHHhCCCHHHHHHHHHHHHHC-CCEeeccCCCCCCeeeeEECHHHHHHHHHHHHHHH
Confidence 568899999988788899999999999999999999999987 99986533 34557899999999977666444
No 52
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=97.36 E-value=0.00047 Score=53.54 Aligned_cols=60 Identities=17% Similarity=0.099 Sum_probs=52.2
Q ss_pred HHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeChhHHHHh
Q psy10346 4 DLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELTGEGNQVK 69 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LTeEG~~yl 69 (292)
.+-+.||..+.. + +...++|..+|+++..+...+..|+.+ |+|..... .|.||++|++++
T Consensus 8 eIi~~IL~~i~~-~-~~~t~La~~~~ls~~~~~~~l~~L~~~-GLI~~~~~---~~~LT~kG~~~l 67 (95)
T 1r7j_A 8 EIIQAILEACKS-G-SPKTRIMYGANLSYALTGRYIKMLMDL-EIIRQEGK---QYMLTKKGEELL 67 (95)
T ss_dssp HHHHHHHHHHTT-C-BCHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEETT---EEEECHHHHHHH
T ss_pred HHHHHHHHHHHc-C-CCHHHHHHHhCcCHHHHHHHHHHHHHC-CCeEEECC---eeEEChhHHHHH
Confidence 456789999974 4 788999999999999999999999987 99998643 499999999876
No 53
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=97.35 E-value=0.00035 Score=56.72 Aligned_cols=72 Identities=14% Similarity=0.080 Sum_probs=59.6
Q ss_pred HHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeee----eEEEEEeChhHHHHhhcCChHH
Q psy10346 4 DLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPL----SHKIWELTGEGNQVKDNGSHEV 76 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~----~~~~~~LTeEG~~yl~~GlPE~ 76 (292)
..+..||..|...+.+...++|..+|++...|.+.+..|+.+ |+|..... -...+.||+.|+.++..-.+..
T Consensus 43 ~~~~~iL~~l~~~~~~t~~ela~~l~i~~~tvs~~l~~Le~~-Glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~ 118 (155)
T 3cdh_A 43 VPEWRVLACLVDNDAMMITRLAKLSLMEQSRMTRIVDQMDAR-GLVTRVADAKDKRRVRVRLTDDGRALAESLVASA 118 (155)
T ss_dssp HHHHHHHHHHSSCSCBCHHHHHHHTTCCHHHHHHHHHHHHHT-TSEEECC------CCCEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHHC-CCEEeccCCCcCCeeEeEECHHHHHHHHHHHHHH
Confidence 567889999987778889999999999999999999999987 99986432 2356899999999987655553
No 54
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=97.34 E-value=0.00019 Score=58.26 Aligned_cols=72 Identities=14% Similarity=0.125 Sum_probs=58.2
Q ss_pred HHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEee----eeEEEEEeChhHHHHhhcCChHH
Q psy10346 4 DLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEP----LSHKIWELTGEGNQVKDNGSHEV 76 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~----~~~~~~~LTeEG~~yl~~GlPE~ 76 (292)
..+..||..|...+.++..++|..+++++..|.+.+..|+.+ |||+... .-...+.||++|+++++.-.+..
T Consensus 41 ~~q~~iL~~l~~~~~~~~~eLa~~l~~~~~~vs~~l~~L~~~-Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~~~~ 116 (149)
T 4hbl_A 41 YSQYLVMLTLWEENPQTLNSIGRHLDLSSNTLTPMLKRLEQS-GWVKRERQQSDKRQLIITLTDNGQQQQEAVFEAI 116 (149)
T ss_dssp HHHHHHHHHHHHSSSEEHHHHHHHHTCCHHHHHHHHHHHHHH-TSEEC---------CEEEECSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC-CCEeeCCCCCCcceeeeeECHHHHHHHHHHHHHH
Confidence 567899999987788888999999999999999999999987 9998653 34567899999999986544433
No 55
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=97.33 E-value=0.00035 Score=53.17 Aligned_cols=70 Identities=13% Similarity=0.063 Sum_probs=54.8
Q ss_pred HHHHHHhccCC-CCChHHHHHhcCCCHHH-HHHHHHHhhccCCcEEEeee--eEEEEEeChhHHHHhhcCChHHH
Q psy10346 7 EKILKYLDTNP-PVDTLDLAKLFNEDHQK-VVGGMKSIETLGEYLIVEPL--SHKIWELTGEGNQVKDNGSHEVL 77 (292)
Q Consensus 7 ~~iL~~L~~~~-~~~~~ela~~~~~~~~~-v~~~~~~L~s~~glv~~e~~--~~~~~~LTeEG~~yl~~GlPE~r 77 (292)
..+|..|...+ .....++|+.+|+++.. |.+.++.|+.+ |+|..... -...+.||++|++.++.=.|..+
T Consensus 18 l~~L~~l~~~~~~~t~~eLa~~l~is~~t~vs~~l~~Le~~-Glv~~~~~drR~~~~~LT~~G~~~~~~~~~~~~ 91 (95)
T 2pg4_A 18 LPTLLEFEKKGYEPSLAEIVKASGVSEKTFFMGLKDRLIRA-GLVKEETLSYRVKTLKLTEKGRRLAECLEKCRD 91 (95)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHCCCHHHHHTTHHHHHHHT-TSEEEEEEETTEEEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHCCCchHHHHHHHHHHHHC-CCeecCCCCCCeEEEEECHhHHHHHHHHHHHHH
Confidence 44666666665 68899999999999999 99999999987 99983221 35678999999998866555443
No 56
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=97.33 E-value=0.0005 Score=58.54 Aligned_cols=89 Identities=15% Similarity=0.103 Sum_probs=69.6
Q ss_pred HHHHHHHHHhcc--CCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeee----EEEEEeChhHHHHhhcCChHHH
Q psy10346 4 DLTEKILKYLDT--NPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLS----HKIWELTGEGNQVKDNGSHEVL 77 (292)
Q Consensus 4 ~~e~~iL~~L~~--~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~----~~~~~LTeEG~~yl~~GlPE~r 77 (292)
..+..||..|.. .+.+...++|..+|+++..|.+.+..|+.+ |||...... ...+.||++|++++..-.+...
T Consensus 41 ~~q~~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~-GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~~~~~~ 119 (189)
T 3nqo_A 41 SRQYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVANLEKN-GYVDVIPSPHDKRAINVKVTDLGKKVMVTCSRTGI 119 (189)
T ss_dssp HHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHT-TSEEEEECSSCSSCEEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHC-CCEEeccCCCCCCeeEEEECHHHHHHHHHHHHHHH
Confidence 567889999975 456889999999999999999999999987 999875443 3788999999999987777655
Q ss_pred -HHhhcCCCCCChHHHhh
Q psy10346 78 -VFNNVPSEGIGQKELLA 94 (292)
Q Consensus 78 -l~~~l~~~~~~~~el~~ 94 (292)
++..+- .+++-+++..
T Consensus 120 ~~~~~~~-~~l~~ee~~~ 136 (189)
T 3nqo_A 120 NFMADVF-HEFTKDELET 136 (189)
T ss_dssp HHHHHHT-TTCCHHHHHH
T ss_pred HHHHHHH-HhCCHHHHHH
Confidence 333332 4566666554
No 57
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=97.32 E-value=0.00025 Score=50.70 Aligned_cols=47 Identities=19% Similarity=0.357 Sum_probs=42.1
Q ss_pred HHHHHHHHhcc-CCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEe
Q psy10346 5 LTEKILKYLDT-NPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVE 52 (292)
Q Consensus 5 ~e~~iL~~L~~-~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e 52 (292)
.|.+||..+.+ +|.++.+.+++.+|++.+.|+.++++|++| |+|+++
T Consensus 11 ~e~~lL~yIr~sGGildI~~~a~kygV~kdeV~~~LrrLe~K-GLI~le 58 (59)
T 2xvc_A 11 TERELLDYIVNNGGFLDIEHFSKVYGVEKQEVVKLLEALKNK-GLIAVE 58 (59)
T ss_dssp CHHHHHHHHHHTTSEEEHHHHHHHHCCCHHHHHHHHHHHHHT-TSEEEE
T ss_pred cHHHHHHHHHHcCCEEeHHHHHHHhCCCHHHHHHHHHHHHHC-CCeecc
Confidence 47889999965 555899999999999999999999999997 999986
No 58
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=97.31 E-value=0.00035 Score=58.24 Aligned_cols=73 Identities=14% Similarity=0.146 Sum_probs=59.2
Q ss_pred HHHHHHHHHhcc-CCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEee----eeEEEEEeChhHHHHhhcCChHHH
Q psy10346 4 DLTEKILKYLDT-NPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEP----LSHKIWELTGEGNQVKDNGSHEVL 77 (292)
Q Consensus 4 ~~e~~iL~~L~~-~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~----~~~~~~~LTeEG~~yl~~GlPE~r 77 (292)
..|..||..|.. ++.+...++|..++++...|.+.+..|+.+ |||..+. .-...+.||++|+++++.-.+...
T Consensus 53 ~~q~~vL~~L~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~-GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~~~~~~ 130 (166)
T 3deu_A 53 QTHWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLEDK-GLISRQTCASDRRAKRIKLTEKAEPLIAEMEEVIH 130 (166)
T ss_dssp HHHHHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHHHT-TSEEEC--------CEEEECGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHCCCHhhHHHHHHHHHHC-CCEEeeCCCCCCCeeEEEECHHHHHHHHHHHHHHH
Confidence 567889999976 566788999999999999999999999987 9998753 334678999999999876665544
No 59
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=97.31 E-value=0.00037 Score=56.42 Aligned_cols=89 Identities=18% Similarity=0.177 Sum_probs=62.9
Q ss_pred HHHHHHHHHhcc-CCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeee----EEEEEeChhHHHHhhcCChHHHH
Q psy10346 4 DLTEKILKYLDT-NPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLS----HKIWELTGEGNQVKDNGSHEVLV 78 (292)
Q Consensus 4 ~~e~~iL~~L~~-~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~----~~~~~LTeEG~~yl~~GlPE~rl 78 (292)
..+..||..|.. .+.+...++|..+++++..|.+.+..|+.+ |||...... ...+.||++|+++++.-.+...-
T Consensus 39 ~~q~~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~-Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~~~~~~ 117 (150)
T 3fm5_A 39 VRSYSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELEER-GLVVRTLDPSDRRNKLIAATEEGRRLRDDAKARVDA 117 (150)
T ss_dssp HHHHHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHHTT-TSEEC-----------CEECHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHHHHC-CCEEeeCCccccchheeeECHHHHHHHHHHHHHHHH
Confidence 567889999964 445788999999999999999999999987 999864432 34589999999999877666552
Q ss_pred H-hhcCCCCCChHHHhh
Q psy10346 79 F-NNVPSEGIGQKELLA 94 (292)
Q Consensus 79 ~-~~l~~~~~~~~el~~ 94 (292)
+ ..+- .+++-+|+..
T Consensus 118 ~~~~~~-~~l~~~e~~~ 133 (150)
T 3fm5_A 118 AHGRYF-EGIPDTVVNQ 133 (150)
T ss_dssp HHHHHH-TTSCHHHHHH
T ss_pred HHHHHH-hcCCHHHHHH
Confidence 2 2221 3455555443
No 60
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=97.29 E-value=0.00013 Score=58.99 Aligned_cols=89 Identities=15% Similarity=0.224 Sum_probs=59.6
Q ss_pred HHHHHHHHHhccC--CCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEee----eeEEEEEeChhHHHHhhcCChHHH
Q psy10346 4 DLTEKILKYLDTN--PPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEP----LSHKIWELTGEGNQVKDNGSHEVL 77 (292)
Q Consensus 4 ~~e~~iL~~L~~~--~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~----~~~~~~~LTeEG~~yl~~GlPE~r 77 (292)
..|..||..|... +.+...++|..+|+++..|.+.+..|+.+ |||.... .-...+.||++|+++++.-.+...
T Consensus 41 ~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~-Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~~~~~~ 119 (148)
T 3jw4_A 41 SQQGRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEKK-GYIERRIPENNARQKNIYVLPKGAALVEEFNNIFL 119 (148)
T ss_dssp HHHHHHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHHT-TSBCCC--------CCCCBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHHHC-CCEEeeCCCCCchhheeeECHHHHHHHHHHHHHHH
Confidence 5678899999765 67889999999999999999999999987 9998653 334567899999999977666555
Q ss_pred H-HhhcCCCCCChHHHhh
Q psy10346 78 V-FNNVPSEGIGQKELLA 94 (292)
Q Consensus 78 l-~~~l~~~~~~~~el~~ 94 (292)
- ...+- .+++-+|+..
T Consensus 120 ~~~~~~~-~~l~~~e~~~ 136 (148)
T 3jw4_A 120 EVEESIT-KGLTKDEQKQ 136 (148)
T ss_dssp HHHHHTT-TTCCHHHHHH
T ss_pred HHHHHHH-hcCCHHHHHH
Confidence 2 22221 3555555443
No 61
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=97.28 E-value=0.00032 Score=56.76 Aligned_cols=73 Identities=12% Similarity=0.012 Sum_probs=60.7
Q ss_pred HHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeee----EEEEEeChhHHHHhhcCChHHH
Q psy10346 4 DLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLS----HKIWELTGEGNQVKDNGSHEVL 77 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~----~~~~~LTeEG~~yl~~GlPE~r 77 (292)
..+..||..|...+.+...++|..+|+++..|.+.+..|+.+ |+|...... ...+.||+.|+.++..-.+...
T Consensus 37 ~~~~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~-glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~~ 113 (155)
T 1s3j_A 37 PAQLFVLASLKKHGSLKVSEIAERMEVKPSAVTLMADRLEQK-NLIARTHNTKDRRVIDLSLTDEGDIKFEEVLAGRK 113 (155)
T ss_dssp HHHHHHHHHHHHHSEEEHHHHHHHHTSCHHHHHHHHHHHHHT-TSEEEEECSSCTTSEEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHC-CCEeecCCCCCCceEEEEECHHHHHHHHHHHHHHH
Confidence 457889999977666788999999999999999999999987 999876432 4578999999999877665544
No 62
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=97.24 E-value=0.00057 Score=52.13 Aligned_cols=69 Identities=22% Similarity=0.120 Sum_probs=51.4
Q ss_pred HHHHHHHHh-ccCCC---CChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEee-eeEEEEEeChhHHHHhhcCCh
Q psy10346 5 LTEKILKYL-DTNPP---VDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEP-LSHKIWELTGEGNQVKDNGSH 74 (292)
Q Consensus 5 ~e~~iL~~L-~~~~~---~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~-~~~~~~~LTeEG~~yl~~GlP 74 (292)
.+..||..| ...+. +...++|+.+|+++..|.+.+..|+.+ |||.... .-...+.||++|+++++.-.+
T Consensus 13 ~~~~iL~~l~~~~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~-Glv~~~~d~R~~~v~LT~~G~~~~~~~~~ 86 (95)
T 2qvo_A 13 KALEILMTIYYESLGGNDVYIQYIASKVNSPHSYVWLIIKKFEEA-KMVECELEGRTKIIRLTDKGQKIAQQIKS 86 (95)
T ss_dssp HHHHHHHHHHHHHHTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHT-TSEEEEEETTEEEEEECHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHccCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC-cCccCCCCCCeEEEEEChhHHHHHHHHHH
Confidence 445566555 32223 678999999999999999999999987 9994322 224578999999998865443
No 63
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=97.22 E-value=0.00079 Score=52.58 Aligned_cols=62 Identities=18% Similarity=0.211 Sum_probs=52.5
Q ss_pred HHHHHHHhccCCCCChHHHHHhc-CCCHHHHHHHHHHhhccCCcEEEeee----eEEEEEeChhHHHHh
Q psy10346 6 TEKILKYLDTNPPVDTLDLAKLF-NEDHQKVVGGMKSIETLGEYLIVEPL----SHKIWELTGEGNQVK 69 (292)
Q Consensus 6 e~~iL~~L~~~~~~~~~ela~~~-~~~~~~v~~~~~~L~s~~glv~~e~~----~~~~~~LTeEG~~yl 69 (292)
...||..|. .+.....++++.+ |++...+.+.++.|++. |+|+-... ....|.||+.|++++
T Consensus 16 ~~~IL~~L~-~~~~~~~eLa~~l~~is~~tls~~L~~Le~~-GlI~r~~~~~d~r~~~y~LT~~G~~l~ 82 (107)
T 2hzt_A 16 KXVILXHLT-HGKKRTSELKRLMPNITQKMLTQQLRELEAD-GVINRIVYNQVPPKVEYELSEYGRSLE 82 (107)
T ss_dssp HHHHHHHHT-TCCBCHHHHHHHCTTSCHHHHHHHHHHHHHT-TSEEEEEECSSSCEEEEEECTTGGGGH
T ss_pred HHHHHHHHH-hCCCCHHHHHHHhcCCCHHHHHHHHHHHHHC-CCEEEeecCCCCCeEEEEECccHHHHH
Confidence 346888887 5677889999999 99999999999999987 99987553 367899999998765
No 64
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=97.19 E-value=0.00075 Score=50.78 Aligned_cols=67 Identities=9% Similarity=0.068 Sum_probs=56.2
Q ss_pred cHHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEee-eeEEEEEeChhHHHHhh
Q psy10346 3 SDLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEP-LSHKIWELTGEGNQVKD 70 (292)
Q Consensus 3 ~~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~-~~~~~~~LTeEG~~yl~ 70 (292)
.+.+.+||..|..++.....++|+.+|++...|.+.++.|+.. |+|.... .....|.||++|...+.
T Consensus 23 ~~~~~~il~~l~~~~~~s~~ela~~l~is~~tvs~~l~~L~~~-glv~~~~~~r~~~y~l~~~~~~~l~ 90 (99)
T 3cuo_A 23 HPKRLLILCMLSGSPGTSAGELTRITGLSASATSQHLARMRDE-GLIDSQRDAQRILYSIKNEAVNAII 90 (99)
T ss_dssp SHHHHHHHHHHTTCCSEEHHHHHHHHCCCHHHHHHHHHHHHHT-TSEEEEECSSCEEEEECCHHHHHHH
T ss_pred ChHHHHHHHHHHhCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC-CCEEEEecCCEEEEEEChHHHHHHH
Confidence 4677889999987767888999999999999999999999987 9998754 34568999999976553
No 65
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=97.19 E-value=0.0012 Score=51.88 Aligned_cols=63 Identities=13% Similarity=0.139 Sum_probs=53.1
Q ss_pred HHHHHHHHhccCCCCChHHHHHhc-CCCHHHHHHHHHHhhccCCcEEEeee----eEEEEEeChhHHHHh
Q psy10346 5 LTEKILKYLDTNPPVDTLDLAKLF-NEDHQKVVGGMKSIETLGEYLIVEPL----SHKIWELTGEGNQVK 69 (292)
Q Consensus 5 ~e~~iL~~L~~~~~~~~~ela~~~-~~~~~~v~~~~~~L~s~~glv~~e~~----~~~~~~LTeEG~~yl 69 (292)
....||..|.. +.....++++.+ |+++..|.+.++.|+.. |+|.-... -...|.||+.|++.+
T Consensus 23 ~~~~IL~~L~~-~~~~~~eLa~~l~~is~~tvs~~L~~Le~~-GlI~r~~~~~d~r~~~~~LT~~G~~~~ 90 (112)
T 1z7u_A 23 WKLSLMDELFQ-GTKRNGELMRALDGITQRVLTDRLREMEKD-GLVHRESFNELPPRVEYTLTPEGYALY 90 (112)
T ss_dssp THHHHHHHHHH-SCBCHHHHHHHSTTCCHHHHHHHHHHHHHH-TSEEEEEECCSSCEEEEEECHHHHHHH
T ss_pred cHHHHHHHHHh-CCCCHHHHHHHhccCCHHHHHHHHHHHHHC-CCEEEeecCCCCCeEEEEECHhHHHHH
Confidence 34568888874 567889999999 99999999999999987 99987653 457899999999865
No 66
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=97.18 E-value=0.0011 Score=52.50 Aligned_cols=62 Identities=16% Similarity=0.124 Sum_probs=52.3
Q ss_pred HHHHHHHhccCCCCC--hHHHHHhc-CCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeChhHHHHh
Q psy10346 6 TEKILKYLDTNPPVD--TLDLAKLF-NEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELTGEGNQVK 69 (292)
Q Consensus 6 e~~iL~~L~~~~~~~--~~ela~~~-~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LTeEG~~yl 69 (292)
...||..|. .+... ..+++..+ |+++..+.+.++.|+.. |+|+-.......|.||+.|+..+
T Consensus 29 rl~IL~~L~-~g~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~-GlV~r~~~r~~~y~LT~~G~~l~ 93 (111)
T 3df8_A 29 TMLIISVLG-NGSTRQNFNDIRSSIPGISSTILSRRIKDLIDS-GLVERRSGQITTYALTEKGMNVR 93 (111)
T ss_dssp HHHHHHHHT-SSSSCBCHHHHHHTSTTCCHHHHHHHHHHHHHT-TSEEEEESSSEEEEECHHHHHHH
T ss_pred HHHHHHHHh-cCCCCCCHHHHHHHccCCCHHHHHHHHHHHHHC-CCEEEeecCcEEEEECccHHHHH
Confidence 356888887 45556 89999999 99999999999999987 99987555678999999999855
No 67
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=97.18 E-value=0.00045 Score=57.34 Aligned_cols=72 Identities=17% Similarity=0.119 Sum_probs=60.2
Q ss_pred HHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEee----eeEEEEEeChhHHHHhhcCChHH
Q psy10346 4 DLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEP----LSHKIWELTGEGNQVKDNGSHEV 76 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~----~~~~~~~LTeEG~~yl~~GlPE~ 76 (292)
..+..||..|...+.+...++|..+|++...|.+.+..|+.+ |||.... .-...+.||++|+.+++...+..
T Consensus 45 ~~~~~iL~~L~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~-GlV~r~~~~~DrR~~~~~LT~~G~~~~~~~~~~~ 120 (168)
T 2nyx_A 45 IPQFRTLVILSNHGPINLATLATLLGVQPSATGRMVDRLVGA-ELIDRLPHPTSRRELLAALTKRGRDVVRQVTEHR 120 (168)
T ss_dssp HHHHHHHHHHHHHCSEEHHHHHHHHTSCHHHHHHHHHHHHHT-TSEEEEECSSCSSCEEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHHHC-CCEEeccCCCCCCeeEEEECHHHHHHHHHHHHHH
Confidence 567889999977667888999999999999999999999987 9998753 33567899999999987655544
No 68
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=97.16 E-value=0.0011 Score=54.29 Aligned_cols=73 Identities=10% Similarity=0.137 Sum_probs=58.3
Q ss_pred HHHHHHHHHhc--cCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeee----EEEEEeChhHHHHhhcCChHHH
Q psy10346 4 DLTEKILKYLD--TNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLS----HKIWELTGEGNQVKDNGSHEVL 77 (292)
Q Consensus 4 ~~e~~iL~~L~--~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~----~~~~~LTeEG~~yl~~GlPE~r 77 (292)
..|..||..|. .++.+...++|..+++++..|.+.+..|+.+ |||.-.... ...+.||++|++.++.-.+...
T Consensus 35 ~~q~~vL~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~-Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~~~~~ 113 (147)
T 4b8x_A 35 FARYEALVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLVRS-GLVAKRPNPNDGRGTLATITDKGREVVEAATRDLM 113 (147)
T ss_dssp HHHHHHHHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEEECC----CEEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHhC-CCEEEeecCCcCceeEEEECHHHHHHHHHHHHHHH
Confidence 45778888884 3455778999999999999999999999987 999875543 4678999999999876555433
No 69
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=97.16 E-value=0.0013 Score=49.64 Aligned_cols=72 Identities=10% Similarity=-0.002 Sum_probs=59.2
Q ss_pred cHHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeee---eEEEEEeChhHHHHhhcCChH
Q psy10346 3 SDLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPL---SHKIWELTGEGNQVKDNGSHE 75 (292)
Q Consensus 3 ~~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~---~~~~~~LTeEG~~yl~~GlPE 75 (292)
...+..||..|...+..+..++|..+|++...|.+.++.|+.+ |+|..... ....+.+|+.|+.++..-.+.
T Consensus 19 ~~~~~~il~~l~~~~~~s~~ela~~l~is~~tv~~~l~~L~~~-glv~~~~~~~~r~~~~~~t~~g~~~~~~~~~~ 93 (109)
T 1sfx_A 19 KPSDVRIYSLLLERGGMRVSEIARELDLSARFVRDRLKVLLKR-GFVRREIVEKGWVGYIYSAEKPEKVLKEFKSS 93 (109)
T ss_dssp CHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEEEEESSSEEEEEEECCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHC-CCEEEEeecCCceEEEEecCcHHHHHHHHHHH
Confidence 3567889999976677889999999999999999999999987 99987553 256778999999887654443
No 70
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=97.15 E-value=0.00052 Score=55.85 Aligned_cols=89 Identities=9% Similarity=0.051 Sum_probs=64.9
Q ss_pred HHHHHHHHHh-ccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEee----eeEEEEEeChhHHHHhhcCChHHH-
Q psy10346 4 DLTEKILKYL-DTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEP----LSHKIWELTGEGNQVKDNGSHEVL- 77 (292)
Q Consensus 4 ~~e~~iL~~L-~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~----~~~~~~~LTeEG~~yl~~GlPE~r- 77 (292)
..+..||..| ...+.+...++|..+|+++..|.+.+..|+.+ |||.... .-...+.||++|++++..-.+...
T Consensus 47 ~~~~~iL~~L~~~~~~~~~~ela~~l~i~~~tvs~~l~~Le~~-Gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~~~ 125 (160)
T 3boq_A 47 LAKFDAMAQLARNPDGLSMGKLSGALKVTNGNVSGLVNRLIKD-GMVVKAMSADDRRSFSAKLTDAGLTTFKQASEAHNR 125 (160)
T ss_dssp HHHHHHHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHHHHHHHH-TSEEEC--------CEEEECHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHCCChhhHHHHHHHHHHC-CCEEeecCCCCCCeEEEEEChhHHHHHHHHHHHHHH
Confidence 4678899999 46667888999999999999999999999987 9998753 334568999999999977655544
Q ss_pred HHhhcCCCCCChHHHhh
Q psy10346 78 VFNNVPSEGIGQKELLA 94 (292)
Q Consensus 78 l~~~l~~~~~~~~el~~ 94 (292)
....+- .+++-+++..
T Consensus 126 ~~~~~~-~~l~~~e~~~ 141 (160)
T 3boq_A 126 ILAELL-RAVSDQDMVE 141 (160)
T ss_dssp HHHHHT-TTCCHHHHHH
T ss_pred HHHHHH-hcCCHHHHHH
Confidence 222222 2455555443
No 71
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=97.11 E-value=0.0014 Score=54.05 Aligned_cols=89 Identities=15% Similarity=0.181 Sum_probs=65.6
Q ss_pred HHHHHHHHHhcc-CCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeee----eEEEEEeChhHHHHhhcCChHHHH
Q psy10346 4 DLTEKILKYLDT-NPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPL----SHKIWELTGEGNQVKDNGSHEVLV 78 (292)
Q Consensus 4 ~~e~~iL~~L~~-~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~----~~~~~~LTeEG~~yl~~GlPE~rl 78 (292)
..+..||..|.. ++.....++|..+++++..|.+.+..|+.+ |||.-... -...+.||++|++.++.-.|...-
T Consensus 31 ~~q~~vL~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~~-GlV~R~~~~~DrR~~~l~LT~~G~~~~~~~~~~~~~ 109 (151)
T 4aik_A 31 QTHWVTLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQLEEK-GLITRHTSANDRRAKRIKLTEQSSPIIEQVDGVISS 109 (151)
T ss_dssp HHHHHHHHHHHHSCTTSCHHHHHHHHTSCHHHHHHHHHHHHHT-TSEEEEECSSCTTCEEEEECGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHCcCHHHHHHHHHHHHhC-CCeEeecCCCCCcchhhhcCHHHHHHHHHHHHHHHH
Confidence 567889999965 444566899999999999999999999987 99986543 346789999999998776665542
Q ss_pred -HhhcCCCCCChHHHhh
Q psy10346 79 -FNNVPSEGIGQKELLA 94 (292)
Q Consensus 79 -~~~l~~~~~~~~el~~ 94 (292)
...+- .+++-+|+..
T Consensus 110 ~~~~~~-~~l~~ee~~~ 125 (151)
T 4aik_A 110 TRKEIL-GGISSDEIAV 125 (151)
T ss_dssp HHHHHT-TTSCHHHHHH
T ss_pred HHHHHH-hCCCHHHHHH
Confidence 22221 3556555443
No 72
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=97.10 E-value=0.001 Score=54.96 Aligned_cols=72 Identities=13% Similarity=0.103 Sum_probs=56.5
Q ss_pred HHHHHHHHHhcc--CCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEee----eeEEEEEeChhHHHHhhcCChHH
Q psy10346 4 DLTEKILKYLDT--NPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEP----LSHKIWELTGEGNQVKDNGSHEV 76 (292)
Q Consensus 4 ~~e~~iL~~L~~--~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~----~~~~~~~LTeEG~~yl~~GlPE~ 76 (292)
..|..||..|.. ++.+...+||..+++++..|.+.+..|+.+ |||.-.. .-...+.||++|+++++.-.+..
T Consensus 46 ~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~-Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~~~~ 123 (168)
T 3u2r_A 46 AQQYNTLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLDDR-GLVLRTRKPENRRVVEVALTDAGLKLLKDLEEPV 123 (168)
T ss_dssp HHHHHHHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHHHT-TSEEEEEETTEEEEEEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHHHC-CCEeecCCCCCCCeeEeEECHHHHHHHHHHHHHH
Confidence 567889999976 346788999999999999999999999987 9998754 34567899999999887655543
No 73
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=97.09 E-value=0.0019 Score=50.00 Aligned_cols=68 Identities=10% Similarity=0.060 Sum_probs=56.1
Q ss_pred CcHHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEee-eeEEEEEeChhHHHHhhc
Q psy10346 2 ASDLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEP-LSHKIWELTGEGNQVKDN 71 (292)
Q Consensus 2 ~~~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~-~~~~~~~LTeEG~~yl~~ 71 (292)
+.+...+||..| ..+.....++|..+|++...|.+.++.|+.. |+|.... .....|.||+.|...+..
T Consensus 19 ~~~~r~~IL~~L-~~~~~~~~ela~~l~is~~tv~~~l~~L~~~-gli~~~~~gr~~~y~l~~~~~~~~~~ 87 (114)
T 2oqg_A 19 SDETRWEILTEL-GRADQSASSLATRLPVSRQAIAKHLNALQAC-GLVESVKVGREIRYRALGAELNKTAR 87 (114)
T ss_dssp TCHHHHHHHHHH-HHSCBCHHHHHHHSSSCHHHHHHHHHHHHHT-TSEEEEEETTEEEEEECSHHHHHHHH
T ss_pred CChHHHHHHHHH-HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC-CCeeEEecCCEEEEEechHHHHHHHH
Confidence 346778899999 4566788999999999999999999999987 9998754 346779999999876543
No 74
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=97.03 E-value=0.00072 Score=51.58 Aligned_cols=59 Identities=15% Similarity=0.211 Sum_probs=50.5
Q ss_pred cHHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeChhHHH
Q psy10346 3 SDLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELTGEGNQ 67 (292)
Q Consensus 3 ~~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LTeEG~~ 67 (292)
.....+||..| .+.....++|+.+|++...|.+.++.|+.. |+|.... ..|.||++|+.
T Consensus 30 ~~~r~~Il~~L--~~~~~~~eLa~~l~is~~tv~~~L~~L~~~-Glv~~~~---g~y~l~~~g~~ 88 (96)
T 1y0u_A 30 NPVRRKILRML--DKGRSEEEIMQTLSLSKKQLDYHLKVLEAG-FCIERVG---ERWVVTDAGKI 88 (96)
T ss_dssp CHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEET---TEEEECTTTCC
T ss_pred CHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC-CCEEEEC---CEEEECCCchH
Confidence 45667899999 456788999999999999999999999987 9998766 39999999854
No 75
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=97.03 E-value=0.00029 Score=56.34 Aligned_cols=71 Identities=13% Similarity=0.107 Sum_probs=58.1
Q ss_pred HHHHHHHHHhccC--CCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEee----eeEEEEEeChhHHHHhhcCChH
Q psy10346 4 DLTEKILKYLDTN--PPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEP----LSHKIWELTGEGNQVKDNGSHE 75 (292)
Q Consensus 4 ~~e~~iL~~L~~~--~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~----~~~~~~~LTeEG~~yl~~GlPE 75 (292)
..|..||..|... +.+...++|..+++++..|.+.+..|+.+ |||.-.. .-...+.||++|+++++.-.+.
T Consensus 37 ~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~-Glv~r~~~~~D~R~~~i~LT~~G~~~~~~~~~~ 113 (127)
T 2frh_A 37 FEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQE-DYFDKKRNEHDERTVLILVNAQQRKKIESLLSR 113 (127)
T ss_dssp HHHHHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHT-TSSCCBCCSSSSCCCEEECCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHC-CCEEecCCCCCCCeeEEEECHHHHHHHHHHHHH
Confidence 5678899999765 66788999999999999999999999987 9998632 3356778999999988654443
No 76
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=97.01 E-value=0.00083 Score=52.76 Aligned_cols=68 Identities=3% Similarity=-0.009 Sum_probs=55.6
Q ss_pred HHHHHHHHHhccCCCCChHHHHHhcC----CCHHHHHHHHHHhhccCCcEEEeee--eEEEEEeChhHHHHhhcC
Q psy10346 4 DLTEKILKYLDTNPPVDTLDLAKLFN----EDHQKVVGGMKSIETLGEYLIVEPL--SHKIWELTGEGNQVKDNG 72 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~~~~ela~~~~----~~~~~v~~~~~~L~s~~glv~~e~~--~~~~~~LTeEG~~yl~~G 72 (292)
..|..||..|...+..+..++|..++ +++..|.+.+..|+.+ |+|..... ....+.||+.|+.+++.-
T Consensus 10 ~~~~~vL~~l~~~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~-Glv~r~~~~rr~~~~~lT~~g~~~~~~~ 83 (123)
T 1okr_A 10 SAEWEVMNIIWMKKYASANNIIEEIQMQKDWSPKTIRTLITRLYKK-GFIDRKKDNKIFQYYSLVEESDIKYKTS 83 (123)
T ss_dssp HHHHHHHHHHHHHSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-TSEEEEEETTEEEEEESSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHHC-CCeEEEecCCeEEEEEecCHHHHHHHHH
Confidence 57888999997667788899999988 7799999999999987 99987653 233468999999876543
No 77
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=97.00 E-value=0.0015 Score=50.86 Aligned_cols=61 Identities=11% Similarity=0.107 Sum_probs=50.5
Q ss_pred HHHHHHhccCCCCChHHHHHhc-CCCHHHHHHHHHHhhccCCcEEEeee----eEEEEEeChhHHHHh
Q psy10346 7 EKILKYLDTNPPVDTLDLAKLF-NEDHQKVVGGMKSIETLGEYLIVEPL----SHKIWELTGEGNQVK 69 (292)
Q Consensus 7 ~~iL~~L~~~~~~~~~ela~~~-~~~~~~v~~~~~~L~s~~glv~~e~~----~~~~~~LTeEG~~yl 69 (292)
..||..|. .+.....++++.+ |+++..|.+.++.|+.. |+|+-... ....|.||+.|+..+
T Consensus 28 ~~IL~~L~-~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~-GlV~r~~~~~d~r~~~y~LT~~G~~l~ 93 (107)
T 2fsw_A 28 LLIIFQIN-RRIIRYGELKRAIPGISEKMLIDELKFLCGK-GLIKKKQYPEVPPRVEYSLTPLGEKVL 93 (107)
T ss_dssp HHHHHHHT-TSCEEHHHHHHHSTTCCHHHHHHHHHHHHHT-TSEEEEEECSSSCEEEEEECHHHHTTH
T ss_pred HHHHHHHH-hCCcCHHHHHHHcccCCHHHHHHHHHHHHHC-CCEEEeecCCCCCeeEEEECccHHHHH
Confidence 45788886 5667789999999 59999999999999987 99986553 357899999998754
No 78
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=96.93 E-value=0.0022 Score=52.32 Aligned_cols=61 Identities=21% Similarity=0.226 Sum_probs=51.6
Q ss_pred HHHHHHhccCCCCChHHHHHhc-CCCHHHHHHHHHHhhccCCcEEEeee----eEEEEEeChhHHHHh
Q psy10346 7 EKILKYLDTNPPVDTLDLAKLF-NEDHQKVVGGMKSIETLGEYLIVEPL----SHKIWELTGEGNQVK 69 (292)
Q Consensus 7 ~~iL~~L~~~~~~~~~ela~~~-~~~~~~v~~~~~~L~s~~glv~~e~~----~~~~~~LTeEG~~yl 69 (292)
..||..|. .+.....++++.+ |+++..+.+.++.|+.. |||+-... ....|.||+.|++.+
T Consensus 38 l~IL~~L~-~g~~~~~eLa~~l~gis~~tls~~L~~Le~~-GlV~r~~~~~d~r~~~y~LT~~G~~l~ 103 (131)
T 1yyv_A 38 VLILVALR-DGTHRFSDLRRXMGGVSEXMLAQSLQALEQD-GFLNRVSYPVVPPHVEYSLTPLGEQVS 103 (131)
T ss_dssp HHHHHHGG-GCCEEHHHHHHHSTTCCHHHHHHHHHHHHHH-TCEEEEEECSSSCEEEEEECHHHHHHH
T ss_pred HHHHHHHH-cCCCCHHHHHHHhccCCHHHHHHHHHHHHHC-CcEEEEecCCCCCeEEEEECccHHHHH
Confidence 45788887 5667789999999 79999999999999987 99987554 467899999998865
No 79
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=96.92 E-value=0.0032 Score=50.52 Aligned_cols=68 Identities=13% Similarity=0.133 Sum_probs=54.3
Q ss_pred HHHHHHHHHhccCCCCChHHHHHhc------CCCHHHHHHHHHHhhccCCcEEEee------eeEEEEEeChhHHHHhhc
Q psy10346 4 DLTEKILKYLDTNPPVDTLDLAKLF------NEDHQKVVGGMKSIETLGEYLIVEP------LSHKIWELTGEGNQVKDN 71 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~~~~ela~~~------~~~~~~v~~~~~~L~s~~glv~~e~------~~~~~~~LTeEG~~yl~~ 71 (292)
.++..||..|.. ++..-.++++.+ ++++..|-..++.|+.. |+|+... ..++.|.||+.|++++..
T Consensus 11 ~l~~~IL~lL~~-~p~~Gyei~~~l~~~g~~~is~gtlY~~L~rLe~~-GlI~~~~~~~~~g~~rk~Y~LT~~G~~~l~~ 88 (117)
T 4esf_A 11 SLEGCVLEIISR-RETYGYEITRHLNDLGFTEVVEGTVYTILVRLEKK-KLVNIEKKPSDMGPPRKFYSLNEAGRQELEL 88 (117)
T ss_dssp HHHHHHHHHHHH-SCBCHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHT-TCEEEEEEC-----CEEEEEECHHHHHHHHH
T ss_pred hHHHHHHHHHHc-CCCCHHHHHHHHHHcCCCCCCccHHHHHHHHHHHC-CCEEEEeecCCCCCCceEEEECHHHHHHHHH
Confidence 456778999975 445567888776 78999999999999987 9999864 347889999999999865
Q ss_pred CC
Q psy10346 72 GS 73 (292)
Q Consensus 72 Gl 73 (292)
=.
T Consensus 89 ~~ 90 (117)
T 4esf_A 89 FW 90 (117)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 80
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=96.88 E-value=0.0013 Score=57.71 Aligned_cols=84 Identities=15% Similarity=0.127 Sum_probs=63.5
Q ss_pred HHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeChhHHHHhhcCChHHHHHhhcCC--
Q psy10346 7 EKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELTGEGNQVKDNGSHEVLVFNNVPS-- 84 (292)
Q Consensus 7 ~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LTeEG~~yl~~GlPE~rl~~~l~~-- 84 (292)
+.|+.....++.+...++|+.+|+++.+|.++++.|+.+ |||+.+.. ..+.||++|++.+..=.+-.+++...-.
T Consensus 9 ~~I~~l~~~~~~~~~~~lA~~l~vs~~tvs~~l~~Le~~-GlV~r~~~--~~i~LT~~G~~~~~~~~~~h~~~e~~l~~~ 85 (214)
T 3hrs_A 9 KCLYELGTRHNKITNKEIAQLMQVSPPAVTEMMKKLLAE-ELLIKDKK--AGYLLTDLGLKLVSDLYRKHRLIEVFLVHH 85 (214)
T ss_dssp HHHHHTTSSCSCCCHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEETT--TEEEECHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCcCHHHHHHHHCCChhHHHHHHHHHHHC-CCEEEecC--CCeEECHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345554455667889999999999999999999999987 99987654 5789999999998877776665544321
Q ss_pred CCCChHHHh
Q psy10346 85 EGIGQKELL 93 (292)
Q Consensus 85 ~~~~~~el~ 93 (292)
-|++.+++.
T Consensus 86 lg~~~~e~~ 94 (214)
T 3hrs_A 86 LGYTTEEIH 94 (214)
T ss_dssp TCCCHHHHH
T ss_pred hCCCHHHHH
Confidence 256655443
No 81
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=96.85 E-value=0.0037 Score=49.09 Aligned_cols=72 Identities=17% Similarity=0.128 Sum_probs=55.6
Q ss_pred HHHHHHHHHhccCCCCChHHHHHh----cCCCHHHHHHHHHHhhccCCcEEEeee-----eEEEEEeChhHHHHhhcCCh
Q psy10346 4 DLTEKILKYLDTNPPVDTLDLAKL----FNEDHQKVVGGMKSIETLGEYLIVEPL-----SHKIWELTGEGNQVKDNGSH 74 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~~~~ela~~----~~~~~~~v~~~~~~L~s~~glv~~e~~-----~~~~~~LTeEG~~yl~~GlP 74 (292)
..+..||..|..+ +..-.++.+. .++++..|.+.++.|+.. |+|+.... ....|.||+.|++.+..=.+
T Consensus 9 ~l~~~IL~~L~~~-~~~gyel~~~l~~~~~i~~~tly~~L~~Le~~-GlI~~~~~~~~~r~r~~y~LT~~G~~~l~~~~~ 86 (108)
T 3l7w_A 9 LIEYLILAIVSKH-DSYGYDISQTIKLIASIKESTLYPILKKLEKA-GYLSTYTQEHQGRRRKYYHLTDSGEKHLVYLTK 86 (108)
T ss_dssp HHHHHHHHHHHHS-CEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHT-TSEEEEEEEETTEEEEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CCcHHHHHHHHHHHhCCCcChHHHHHHHHHHC-CCeEEEeecCCCCcceEEEECHHHHHHHHHHHH
Confidence 5678899999753 3344556555 589999999999999987 99988643 36789999999999866555
Q ss_pred HHH
Q psy10346 75 EVL 77 (292)
Q Consensus 75 E~r 77 (292)
+.+
T Consensus 87 ~~~ 89 (108)
T 3l7w_A 87 EWS 89 (108)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 82
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=96.82 E-value=0.0042 Score=49.54 Aligned_cols=72 Identities=13% Similarity=-0.000 Sum_probs=56.4
Q ss_pred HHHHHHHHHhccCCCCChHHHHHhc--------CCCHHHHHHHHHHhhccCCcEEEee------eeEEEEEeChhHHHHh
Q psy10346 4 DLTEKILKYLDTNPPVDTLDLAKLF--------NEDHQKVVGGMKSIETLGEYLIVEP------LSHKIWELTGEGNQVK 69 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~~~~ela~~~--------~~~~~~v~~~~~~L~s~~glv~~e~------~~~~~~~LTeEG~~yl 69 (292)
.++..||..|.. ++..-.++.+.+ ++++..|-..++.|+.. |+|+... .....|.||+.|++++
T Consensus 12 ~l~~~IL~~L~~-~~~~Gyei~~~l~~~~~~~~~i~~gtly~~L~rLe~~-GlI~~~~~~~~~~~~rk~Y~LT~~G~~~l 89 (116)
T 3f8b_A 12 QTNVILLNVLKQ-GDNYVYGIIKQVKEASNGEMELNEATLYTIFKRLEKD-GIISSYWGDESQGGRRKYYRLTEIGHENM 89 (116)
T ss_dssp HHHHHHHHHHHH-CCBCHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHT-TSEEEEEEC----CCEEEEEECHHHHHHH
T ss_pred hHHHHHHHHHHh-CCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHC-CCEEEEeeccCCCCCceEEEECHHHHHHH
Confidence 466778999975 344556676654 78999999999999987 9999864 3477899999999999
Q ss_pred hcCChHHH
Q psy10346 70 DNGSHEVL 77 (292)
Q Consensus 70 ~~GlPE~r 77 (292)
..-.++..
T Consensus 90 ~~~~~~~~ 97 (116)
T 3f8b_A 90 RLAFESWS 97 (116)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77666654
No 83
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=96.81 E-value=0.0016 Score=56.67 Aligned_cols=68 Identities=19% Similarity=0.028 Sum_probs=56.1
Q ss_pred HHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEee----eeEEEEEeChhHHHHhhcC
Q psy10346 4 DLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEP----LSHKIWELTGEGNQVKDNG 72 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~----~~~~~~~LTeEG~~yl~~G 72 (292)
..+..||..|...+.+...++|..+++++..|.+.+..|+.+ |||.-.. .-...+.||++|+.+++.-
T Consensus 48 ~~q~~iL~~L~~~~~~t~~eLa~~l~i~~stvs~~l~~Le~~-GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~ 119 (207)
T 2fxa_A 48 INEHHILWIAYQLNGASISEIAKFGVMHVSTAFNFSKKLEER-GYLRFSKRLNDKRNTYVQLTEEGTEVFWSL 119 (207)
T ss_dssp HHHHHHHHHHHHHTSEEHHHHHHHTTCCHHHHHHHHHHHHHH-TSEEEECC------CEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHHC-CCEEEecCCCCCceEEEEECHHHHHHHHHH
Confidence 567889999976677888999999999999999999999987 9998754 2345789999999988543
No 84
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=96.81 E-value=0.0041 Score=49.85 Aligned_cols=70 Identities=16% Similarity=0.178 Sum_probs=55.4
Q ss_pred HHHHHHHHHhccCCCCChHHHHHhc------CCCHHHHHHHHHHhhccCCcEEEee------eeEEEEEeChhHHHHhhc
Q psy10346 4 DLTEKILKYLDTNPPVDTLDLAKLF------NEDHQKVVGGMKSIETLGEYLIVEP------LSHKIWELTGEGNQVKDN 71 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~~~~ela~~~------~~~~~~v~~~~~~L~s~~glv~~e~------~~~~~~~LTeEG~~yl~~ 71 (292)
.++.-||..|.. ++..-.++++.+ ++++..|-..++.|+.. |+|+... ..++.|.||+.|++++..
T Consensus 13 ~l~~~IL~lL~~-~p~~Gyei~~~l~~~g~~~is~gtlY~~L~rLe~~-GlI~~~~~~~~~g~~rk~Y~lT~~G~~~l~~ 90 (116)
T 3hhh_A 13 ILEGLVLAIIQR-KETYGYEITKILNDQGFTEIVEGTVYTILLRLEKN-QWVIAEKKPSEKGPMRKFYRLTSSGEAELAD 90 (116)
T ss_dssp HHHHHHHHHHHH-SCBCHHHHHHHHHTTSCSSCCHHHHHHHHHHHHHT-TSEEEEEEECC--CEEEEEEECHHHHHHHHH
T ss_pred hHHHHHHHHHhc-CCCCHHHHHHHHHHcCCCCCCccHHHHHHHHHHHC-CCEEEEeeecCCCCCceEEEECHHHHHHHHH
Confidence 456779999975 344557888776 68999999999999987 9999864 347789999999999866
Q ss_pred CChH
Q psy10346 72 GSHE 75 (292)
Q Consensus 72 GlPE 75 (292)
=..+
T Consensus 91 ~~~~ 94 (116)
T 3hhh_A 91 FWQR 94 (116)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 85
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=96.80 E-value=0.001 Score=54.63 Aligned_cols=73 Identities=12% Similarity=0.059 Sum_probs=52.8
Q ss_pred HHHHHHHHHhccC-----CCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeee---eEEEEEeChhHHHHhhcCChH
Q psy10346 4 DLTEKILKYLDTN-----PPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPL---SHKIWELTGEGNQVKDNGSHE 75 (292)
Q Consensus 4 ~~e~~iL~~L~~~-----~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~---~~~~~~LTeEG~~yl~~GlPE 75 (292)
..|..||..|... +.++..++|..+++++..|.+.+..|+.+ |+|..... -...+.||++|++.++.-.|.
T Consensus 33 ~~q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~~~~tvsr~v~~Le~~-glVr~~~~~DrR~~~v~LT~~G~~~~~~~~~~ 111 (148)
T 4fx0_A 33 NTQFSTLAVISLSEGSAGIDLTMSELAARIGVERTTLTRNLEVMRRD-GLVRVMAGADARCKRIELTAKGRAALQKAVPL 111 (148)
T ss_dssp HHHHHHHHHHHC---------CHHHHHHHHTCCHHHHHHHHHHHHHT-TSBC-----------CCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCcCHHHHHHHHCCChhhHHHHHHHHHHC-CCEEeeCCCCCCeeEEEECHHHHHHHHHHHHH
Confidence 4578899988543 34678999999999999999999999987 99965322 234679999999998877665
Q ss_pred HH
Q psy10346 76 VL 77 (292)
Q Consensus 76 ~r 77 (292)
.+
T Consensus 112 ~~ 113 (148)
T 4fx0_A 112 WR 113 (148)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 86
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=96.74 E-value=0.0039 Score=51.21 Aligned_cols=61 Identities=8% Similarity=0.072 Sum_probs=51.0
Q ss_pred HHHHHHhccCCCCChHHHHHhc-CCCHHHHHHHHHHhhccCCcEEEeeee----EEEEEeChhHHHHh
Q psy10346 7 EKILKYLDTNPPVDTLDLAKLF-NEDHQKVVGGMKSIETLGEYLIVEPLS----HKIWELTGEGNQVK 69 (292)
Q Consensus 7 ~~iL~~L~~~~~~~~~ela~~~-~~~~~~v~~~~~~L~s~~glv~~e~~~----~~~~~LTeEG~~yl 69 (292)
..||..|. .+.....+++..+ |++...+.+.++.|+.. |||+-.... ...|.||+.|+..+
T Consensus 29 l~IL~~L~-~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~~-GLV~R~~~~~d~r~v~y~LT~~G~~l~ 94 (131)
T 4a5n_A 29 GILFYHMI-DGKKRFNEFRRICPSITQRMLTLQLRELEAD-GIVHREVYHQVPPKVEYSLTEFGRTLE 94 (131)
T ss_dssp HHHHHHHT-TSCBCHHHHHHHCTTSCHHHHHHHHHHHHHT-TSEEEEEECSSSCEEEEEECTTGGGGH
T ss_pred HHHHHHHh-cCCcCHHHHHHHhcccCHHHHHHHHHHHHHC-CCEEEEecCCCCCeEEEEECHhHHHHH
Confidence 34777776 5677889999999 99999999999999987 999865443 68999999998754
No 87
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=96.73 E-value=0.0043 Score=51.62 Aligned_cols=71 Identities=14% Similarity=0.094 Sum_probs=55.4
Q ss_pred HHHHHHHHHhccCCCCChHHHHHhc--------CCCHHHHHHHHHHhhccCCcEEEeee------eEEEEEeChhHHHHh
Q psy10346 4 DLTEKILKYLDTNPPVDTLDLAKLF--------NEDHQKVVGGMKSIETLGEYLIVEPL------SHKIWELTGEGNQVK 69 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~~~~ela~~~--------~~~~~~v~~~~~~L~s~~glv~~e~~------~~~~~~LTeEG~~yl 69 (292)
..+..||..|.. ++....++++.+ ++++..|...++.|+.. |+|+.... ..+.|.||+.|++.+
T Consensus 41 ~~~~~IL~~L~~-~~~~gyeI~~~l~~~~~~~~~is~gtLy~~L~rLE~~-GlI~~~~~~~~~~~~rk~Y~LT~~G~~~l 118 (145)
T 1xma_A 41 YVDTIILSLLIE-GDSYGYEISKNIRIKTDELYVIKETTLYSAFARLEKN-GYIKSYYGEETQGKRRTYYRITPEGIKYY 118 (145)
T ss_dssp THHHHHHHHHHH-CCEEHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHT-TSEEEEEEEEC--CEEEEEEECHHHHHHH
T ss_pred cHHHHHHHHHHh-CCCCHHHHHHHHHHhhCCccCcChhHHHHHHHHHHHC-CCEEEEEeccCCCCCeEEEEECHHHHHHH
Confidence 567889999975 444556776665 68999999999999987 99988643 468899999999998
Q ss_pred hcCChHH
Q psy10346 70 DNGSHEV 76 (292)
Q Consensus 70 ~~GlPE~ 76 (292)
..-..+.
T Consensus 119 ~~~~~~~ 125 (145)
T 1xma_A 119 KQKCEEW 125 (145)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7654443
No 88
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=96.72 E-value=0.001 Score=61.13 Aligned_cols=58 Identities=17% Similarity=0.210 Sum_probs=49.1
Q ss_pred CCCCCChHHHHHHHHHHHhhhCCceecCCCCccccceeccccCCCCCCCCCCCCCCceeecC
Q psy10346 216 PSGHLHPLMKVRAEFRQIFLDMGFTEMPTNNFVESSFWNFDALFQPQQHPARDAHDTFFVTD 277 (292)
Q Consensus 216 ~~g~~Hpl~~~~~~i~~if~~mGF~e~~~~~~Ves~f~NFD~L~~PqdHPAR~~~DTfyl~~ 277 (292)
..|..||..++++.|+++|.++||.|+. .|.+++. .+|+.++.|.+||.+ .|+||+++
T Consensus 72 ~~g~~~~~~~i~~~ir~~l~~~Gf~EV~-Tp~l~~~-~~~~~~~~~~~~p~~--~~~~~~~~ 129 (290)
T 3qtc_A 72 AEERENYLGKLEREITRFFVDRGFLEIK-SPILIPL-EYIERMGIDNDTELS--KQIFRVDK 129 (290)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHTTCEEEC-CCSEEET-HHHHHTTCCTTSSGG--GGCCEETT
T ss_pred ccccccHHHHHHHHHHHHHHHCCCEEEE-CCceeeH-HHHHhcCCCcCCchh--hhheeeCC
Confidence 4689999999999999999999999996 5777776 489999999999986 35666653
No 89
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=96.71 E-value=0.0022 Score=51.63 Aligned_cols=63 Identities=19% Similarity=0.233 Sum_probs=50.3
Q ss_pred HHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeChhHHHHhhcCCh
Q psy10346 9 ILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELTGEGNQVKDNGSH 74 (292)
Q Consensus 9 iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LTeEG~~yl~~GlP 74 (292)
|+..+..++..+..++|..+|++...|.+.+..|+.+ |+|..... ..+.||+.|+..+..-.+
T Consensus 13 i~~l~~~~~~~~~~ela~~l~vs~~tvs~~l~~Le~~-Glv~r~~~--~~~~LT~~g~~~~~~~~~ 75 (142)
T 1on2_A 13 IYMLIEEKGYARVSDIAEALAVHPSSVTKMVQKLDKD-EYLIYEKY--RGLVLTSKGKKIGKRLVY 75 (142)
T ss_dssp HHHHHHHHSSCCHHHHHHHHTSCHHHHHHHHHHHHHT-TSEEEETT--TEEEECHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCCHHHHHHHhCCCHHHHHHHHHHHHHC-CCEEEeeC--ceEEEchhHHHHHHHHHH
Confidence 3333444566888999999999999999999999987 99987543 579999999998765333
No 90
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=96.71 E-value=0.0018 Score=58.38 Aligned_cols=64 Identities=17% Similarity=0.243 Sum_probs=55.7
Q ss_pred HHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeChhHHHHh
Q psy10346 4 DLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELTGEGNQVK 69 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LTeEG~~yl 69 (292)
..+.+||..|..++.+...++|+.+|++..+|.+.++.|+.. |+|.... ....|.||+.|+..+
T Consensus 152 ~~~~~IL~~L~~~~~~s~~eLA~~lglsksTv~r~L~~Le~~-GlV~r~~-r~~~~~LT~~G~~l~ 215 (244)
T 2wte_A 152 REEMKLLNVLYETKGTGITELAKMLDKSEKTLINKIAELKKF-GILTQKG-KDRKVELNELGLNVI 215 (244)
T ss_dssp HHHHHHHHHHHHHTCBCHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEET-TTTEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC-CCEEEeC-CccEEEECHHHHHHH
Confidence 568889999876677888999999999999999999999987 9998763 356799999999875
No 91
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=96.68 E-value=0.0031 Score=65.82 Aligned_cols=59 Identities=17% Similarity=0.238 Sum_probs=48.1
Q ss_pred CCCCCCCChHHHHHHHHHHHhhhCCceecCCCCccccceeccccCCCCCCCCCCCCCCceeecCCCCC
Q psy10346 214 SLPSGHLHPLMKVRAEFRQIFLDMGFTEMPTNNFVESSFWNFDALFQPQQHPARDAHDTFFVTDPKTS 281 (292)
Q Consensus 214 ~~~~g~~Hpl~~~~~~i~~if~~mGF~e~~~~~~Ves~f~NFD~L~~PqdHPAR~~~DTfyl~~~~~~ 281 (292)
....|..||..++++++|++|.++||.|+-+.++|..++| +.|+ |+++| +++|.+|-..
T Consensus 486 ~~~~g~~~~~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~--~~l~-~~~~~------~v~L~NPis~ 544 (795)
T 2rhq_B 486 EVTSGELTDRQHKTRTLKETLEGAGLNQAITYSLVSKDHA--KDFA-LQERP------TISLLMPMSE 544 (795)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHHHTTCEECCCCSEECTTTT--TTTC-SSCCC------CEECSSCSCT
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHCCCEEEecCCccCHHHH--HhhC-CCCCc------eEEEcCCCch
Confidence 4567899999999999999999999999988999877755 6665 64332 7999988554
No 92
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=96.66 E-value=0.003 Score=50.30 Aligned_cols=70 Identities=20% Similarity=0.212 Sum_probs=55.2
Q ss_pred HHHHHHHHHhccCCCCChHHHHHhc------C--CCH-HHHHHHHHHhhccCCcEEEeee-----eEEEEEeChhHHHHh
Q psy10346 4 DLTEKILKYLDTNPPVDTLDLAKLF------N--EDH-QKVVGGMKSIETLGEYLIVEPL-----SHKIWELTGEGNQVK 69 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~~~~ela~~~------~--~~~-~~v~~~~~~L~s~~glv~~e~~-----~~~~~~LTeEG~~yl 69 (292)
..+..||..|.. ++....++++.+ + +++ ..|...++.|+.. |+|+.... ..+.|.||+.|++.+
T Consensus 13 ~~~~~IL~~L~~-~~~~gyel~~~l~~~g~~~~~is~~~tly~~L~~Le~~-GlI~~~~~~~~~~~r~~Y~LT~~G~~~l 90 (118)
T 2esh_A 13 WLASTILLLVAE-KPSHGYELAERLAEFGIEIPGIGHMGNIYRVLADLEES-GFLSTEWDTTVSPPRKIYRITPQGKLYL 90 (118)
T ss_dssp HHHHHHHHHHHH-SCBCHHHHHHHHHTTCCSSTTCCCCCCHHHHHHHHHHT-TSEEEEEECSSSSCEEEEEECHHHHHHH
T ss_pred hHHHHHHHHHHc-CCCCHHHHHHHHHHhCCcccCCCCcchHHHHHHHHHHC-CCeEEEeecCCCCCceEEEEChHHHHHH
Confidence 567889999965 455667787776 3 788 9999999999987 99988653 467899999999988
Q ss_pred hcCChH
Q psy10346 70 DNGSHE 75 (292)
Q Consensus 70 ~~GlPE 75 (292)
..-..+
T Consensus 91 ~~~~~~ 96 (118)
T 2esh_A 91 REILRS 96 (118)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 664333
No 93
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=96.64 E-value=0.006 Score=49.51 Aligned_cols=71 Identities=21% Similarity=0.172 Sum_probs=54.8
Q ss_pred HHHHHHHHHhccCCCCChHHHHHh-----cCCCHHHHHHHHHHhhccCCcEEEee-----eeEEEEEeChhHHHHhhcCC
Q psy10346 4 DLTEKILKYLDTNPPVDTLDLAKL-----FNEDHQKVVGGMKSIETLGEYLIVEP-----LSHKIWELTGEGNQVKDNGS 73 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~~~~ela~~-----~~~~~~~v~~~~~~L~s~~glv~~e~-----~~~~~~~LTeEG~~yl~~Gl 73 (292)
.++..||..|. ++..-.++.+. .++++..|-..++.|+.. |+|+... ..++.|.||+.|++++..-.
T Consensus 21 ~l~~~IL~lL~--~p~~GYei~~~l~~~~~~is~gtlY~~L~rLe~~-GlI~~~~~~~~~~~rk~Y~LT~~Gr~~l~~~~ 97 (123)
T 3ri2_A 21 TLVMLVLSQLR--EPAYGYALVKSLADHGIPIEANTLYPLMRRLESQ-GLLASEWDNGGSKPRKYYRTTDEGLRVLREVE 97 (123)
T ss_dssp HHHHHHHHHTT--SCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT-TSEEEEEEECSSCEEEEEEECHHHHHHHHHHH
T ss_pred cHHHHHHHHHc--CCCCHHHHHHHHHHhCCCCCcchHHHHHHHHHHC-CCEEEEeccCCCCCceEEEECHHHHHHHHHHH
Confidence 35677888887 44444667665 488999999999999987 9999865 34779999999999987654
Q ss_pred hHHH
Q psy10346 74 HEVL 77 (292)
Q Consensus 74 PE~r 77 (292)
.+.+
T Consensus 98 ~~~~ 101 (123)
T 3ri2_A 98 AQWH 101 (123)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 94
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=96.61 E-value=0.0033 Score=47.75 Aligned_cols=66 Identities=11% Similarity=0.084 Sum_probs=55.0
Q ss_pred CcHHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeee-eEEEEEeChhHHHHh
Q psy10346 2 ASDLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPL-SHKIWELTGEGNQVK 69 (292)
Q Consensus 2 ~~~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~-~~~~~~LTeEG~~yl 69 (292)
+.+...+||..|.. +.....++|+.+|+++..|.+.++.|+.. |+|..+.. ....|.||+++...+
T Consensus 21 ~~~~r~~Il~~L~~-~~~~~~ela~~l~is~~tvs~~L~~L~~~-Glv~~~~~g~~~~y~l~~~~~~~l 87 (98)
T 3jth_A 21 ANERRLQILCMLHN-QELSVGELCAKLQLSQSALSQHLAWLRRD-GLVTTRKEAQTVYYTLKSEEVKAM 87 (98)
T ss_dssp CSHHHHHHHHHTTT-SCEEHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEECCTTCCEEEECCHHHHHH
T ss_pred CCHHHHHHHHHHhc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHC-CCeEEEEeCCEEEEEECHHHHHHH
Confidence 35667789999976 67788999999999999999999999987 99987544 357899999987654
No 95
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=96.61 E-value=0.0037 Score=50.10 Aligned_cols=72 Identities=19% Similarity=0.229 Sum_probs=55.3
Q ss_pred HHHHHHHHHhccCCCCChHHHHHhcC------CCHHHHHHHHHHhhccCCcEEEeee------eEEEEEeChhHHHHhhc
Q psy10346 4 DLTEKILKYLDTNPPVDTLDLAKLFN------EDHQKVVGGMKSIETLGEYLIVEPL------SHKIWELTGEGNQVKDN 71 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~~~~ela~~~~------~~~~~v~~~~~~L~s~~glv~~e~~------~~~~~~LTeEG~~yl~~ 71 (292)
..+..||..|.. ++..-.++++.+. +++..|-..++.|+.. |+|+.... ..+.|.||+.|++++..
T Consensus 14 ~l~~~IL~lL~~-~p~~gyel~~~l~~~~~~~i~~gtly~~L~~Le~~-GlI~~~~~~~~~~~~rk~Y~lT~~G~~~l~~ 91 (117)
T 3elk_A 14 LITLYILKELVK-RPMHGYELQKSMFETTGQALPQGSIYILLKTMKER-GFVISESSVNEKGQQLTVYHITDAGKKFLCD 91 (117)
T ss_dssp HHHHHHHHHHHH-SCEEHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHH-TSEEEEEEEC-CCCEEEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHHHHhCCCCCcchHHHHHHHHHHC-CCEEEEeeecCCCCCceEEEECHHHHHHHHH
Confidence 456778999975 3444566766654 7889999999999987 99998653 57889999999999876
Q ss_pred CChHHH
Q psy10346 72 GSHEVL 77 (292)
Q Consensus 72 GlPE~r 77 (292)
-..+..
T Consensus 92 ~~~~~~ 97 (117)
T 3elk_A 92 HSQALQ 97 (117)
T ss_dssp TSTTHH
T ss_pred HHHHHH
Confidence 554433
No 96
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=96.60 E-value=0.0045 Score=51.16 Aligned_cols=61 Identities=11% Similarity=0.154 Sum_probs=50.8
Q ss_pred HHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeee---EEEEEeChhHHHHh
Q psy10346 7 EKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLS---HKIWELTGEGNQVK 69 (292)
Q Consensus 7 ~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~---~~~~~LTeEG~~yl 69 (292)
..||..|. .+.....++++.+|++...|.+.++.|+.. |+|+-.... ...|.||+.|+..+
T Consensus 27 l~IL~~L~-~g~~~~~eLa~~lgis~~tls~~L~~Le~~-GlI~r~~~~~d~~~~y~LT~~G~~l~ 90 (146)
T 2f2e_A 27 MLIVRDAF-EGLTRFGEFQKSLGLAKNILAARLRNLVEH-GVMVAVPAESGSHQEYRLTDKGRALF 90 (146)
T ss_dssp HHHHHHHH-TTCCSHHHHHHHHCCCHHHHHHHHHHHHHT-TSEEEEECSSSSCEEEEECHHHHTTH
T ss_pred HHHHHHHH-hCCCCHHHHHHHhCCCHHHHHHHHHHHHHC-CCEEEEecCCCCeEEEEECchHHHHH
Confidence 45778785 566788999999999999999999999987 999875422 57999999998754
No 97
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=96.59 E-value=0.0044 Score=49.46 Aligned_cols=72 Identities=11% Similarity=0.037 Sum_probs=56.4
Q ss_pred HHHHHHHHHhccCCCCChHHHHHhc------CCCHHHHHHHHHHhhccCCcEEEee------eeEEEEEeChhHHHHhhc
Q psy10346 4 DLTEKILKYLDTNPPVDTLDLAKLF------NEDHQKVVGGMKSIETLGEYLIVEP------LSHKIWELTGEGNQVKDN 71 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~~~~ela~~~------~~~~~~v~~~~~~L~s~~glv~~e~------~~~~~~~LTeEG~~yl~~ 71 (292)
.++..||..|.. ++..-.++++.+ ++++..|-..++.|+.. |+|+... ..++.|.||+.|++++..
T Consensus 9 ~l~~~IL~~L~~-~~~~Gyei~~~l~~~~~~~is~gtlY~~L~rLe~~-GlI~~~~~~~~~g~~rk~Y~LT~~G~~~l~~ 86 (115)
T 4esb_A 9 VLEGCILYIISQ-EEVYGYELSTKLNKHGFTFVSEGSIYPLLLRMQKE-KLIEGTLKASSLGPKRKYYHITDKGLEQLEE 86 (115)
T ss_dssp THHHHHHHHHHH-SCEEHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHT-TSEEEEEEECTTSCEEEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHHHcCCCCCCcChHHHHHHHHHHC-CCeEEEeeecCCCCCcEEEEECHHHHHHHHH
Confidence 467789999975 344557777765 48999999999999987 9999864 257889999999999876
Q ss_pred CChHHH
Q psy10346 72 GSHEVL 77 (292)
Q Consensus 72 GlPE~r 77 (292)
-..+..
T Consensus 87 ~~~~~~ 92 (115)
T 4esb_A 87 FKQSWG 92 (115)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655543
No 98
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=96.58 E-value=0.00061 Score=57.23 Aligned_cols=73 Identities=12% Similarity=0.041 Sum_probs=58.5
Q ss_pred HHHHHHHHHhccCCC---CChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEee----eeEEEEEeChhHHHHhhcCChHH
Q psy10346 4 DLTEKILKYLDTNPP---VDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEP----LSHKIWELTGEGNQVKDNGSHEV 76 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~---~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~----~~~~~~~LTeEG~~yl~~GlPE~ 76 (292)
..+..||..|...+. +...++|..+|+++..|.+.+..|+.+ |||+... .-...+.||+.|+.++..-.+..
T Consensus 69 ~~~~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~-GlV~r~~~~~DrR~~~~~LT~~G~~~~~~~~~~~ 147 (181)
T 2fbk_A 69 AAGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLLEK-GLIERREDERDRRSASIRLTPQGRALVTHLLPAH 147 (181)
T ss_dssp HHHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHHHH-TSEECCC-------CCBEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC-cCEEecCCCCCCCeeEEEECHHHHHHHHHHHHHH
Confidence 567889999976443 788999999999999999999999987 9998753 33456899999999997766554
Q ss_pred H
Q psy10346 77 L 77 (292)
Q Consensus 77 r 77 (292)
.
T Consensus 148 ~ 148 (181)
T 2fbk_A 148 L 148 (181)
T ss_dssp H
T ss_pred H
Confidence 3
No 99
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=96.54 E-value=0.0044 Score=49.00 Aligned_cols=74 Identities=15% Similarity=0.129 Sum_probs=60.0
Q ss_pred CcHHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeee-eEEEEEeChhHHHHhhcCChHHH
Q psy10346 2 ASDLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPL-SHKIWELTGEGNQVKDNGSHEVL 77 (292)
Q Consensus 2 ~~~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~-~~~~~~LTeEG~~yl~~GlPE~r 77 (292)
+.+...+||..|. .++....++|..+|++...|.+.++.|+.. |+|..+.. ....|.||++|..-+..-+.++.
T Consensus 16 ~~~~R~~Il~~L~-~~~~~~~eLa~~l~is~~tvs~hL~~L~~~-GlV~~~~~gr~~~y~l~~~~~~~l~~~~~~~~ 90 (118)
T 3f6o_A 16 ADPTRRAVLGRLS-RGPATVSELAKPFDMALPSFMKHIHFLEDS-GWIRTHKQGRVRTCAIEKEPFTAVEAWLAEQQ 90 (118)
T ss_dssp TSHHHHHHHHHHH-TCCEEHHHHHTTCCSCHHHHHHHHHHHHHT-TSEEEEEETTEEEEEECSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-hCCCCHHHHHHHhCcCHHHHHHHHHHHHHC-CCeEEEecCCEEEEEECHHHHHHHHHHHHHHH
Confidence 3467788999887 466788999999999999999999999986 99988654 46789999999887755544443
No 100
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=96.53 E-value=0.0035 Score=49.20 Aligned_cols=70 Identities=14% Similarity=0.019 Sum_probs=55.8
Q ss_pred HHHHHHHHHhcc------CCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeee--eEEEEEeChhHHHHhhcCCh
Q psy10346 4 DLTEKILKYLDT------NPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPL--SHKIWELTGEGNQVKDNGSH 74 (292)
Q Consensus 4 ~~e~~iL~~L~~------~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~--~~~~~~LTeEG~~yl~~GlP 74 (292)
+.+..+|..|.. ++.+...+||+..+++...+.+.+..|+.. |||.+... ......||++|+..++.-.|
T Consensus 16 ~~q~~vL~~L~~~~~~~~g~~~s~~eLa~~l~l~~stLsR~l~rLe~~-GLV~r~~~~D~R~~v~LT~~G~~~l~~~~p 93 (96)
T 2obp_A 16 PAIVEVLLVLREAGIENGATPWSLPKIAKRAQLPMSVLRRVLTQLQAA-GLADVSVEADGRGHASLTQEGAALAAQLFP 93 (96)
T ss_dssp HHHHHHHHHHHHHTSSTTCCCCBHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEEECTTSCEEEEECHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhhCCCCCcCHHHHHHHhCCchhhHHHHHHHHHHC-CCEEeecCCCCceeEEECHHHHHHHHHhcC
Confidence 567888887743 256788999999999999999999999986 99998433 12247999999998876655
No 101
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=96.48 E-value=0.0041 Score=52.91 Aligned_cols=65 Identities=22% Similarity=0.314 Sum_probs=51.6
Q ss_pred HHHHHHHHhccCCCCChHHHHHhc--------CCCHHHHHHHHHHhhccCCcEEEeee------eEEEEEeChhHHHHhh
Q psy10346 5 LTEKILKYLDTNPPVDTLDLAKLF--------NEDHQKVVGGMKSIETLGEYLIVEPL------SHKIWELTGEGNQVKD 70 (292)
Q Consensus 5 ~e~~iL~~L~~~~~~~~~ela~~~--------~~~~~~v~~~~~~L~s~~glv~~e~~------~~~~~~LTeEG~~yl~ 70 (292)
++..||..|.. ++....++++.+ ++++..|...++.|+.. |+|+.... .++.|.||+.|++.+.
T Consensus 3 l~~~iL~lL~~-~~~~gyel~~~l~~~~~~~~~~s~~~ly~~L~~Le~~-GlI~~~~~~~~~~~~r~~Y~lT~~G~~~l~ 80 (179)
T 1yg2_A 3 LPHVILTVLST-RDATGYDITKEFSASIGYFWKASHQQVYRELNKMGEQ-GLVTCVLEPQEGKPDRKVYSITQAGRSALG 80 (179)
T ss_dssp HHHHHHHHHHH-CCBCHHHHHHHHTTGGGGTCCCCHHHHHHHHHHHHHT-TSEEECCC---------CEEECHHHHHHHH
T ss_pred hHHHHHHHHhc-CCCCHHHHHHHHHHHhCCccCCCcCcHHHHHHHHHHC-CCeEEEeecCCCCCCceEEEeChHHHHHHH
Confidence 57789999975 556778888877 68999999999999986 99997543 4678999999999775
Q ss_pred c
Q psy10346 71 N 71 (292)
Q Consensus 71 ~ 71 (292)
+
T Consensus 81 ~ 81 (179)
T 1yg2_A 81 E 81 (179)
T ss_dssp H
T ss_pred H
Confidence 3
No 102
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=96.45 E-value=0.012 Score=45.60 Aligned_cols=64 Identities=11% Similarity=0.132 Sum_probs=53.4
Q ss_pred CcHHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeee-eEEEEEeChhHHH
Q psy10346 2 ASDLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPL-SHKIWELTGEGNQ 67 (292)
Q Consensus 2 ~~~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~-~~~~~~LTeEG~~ 67 (292)
+.....+||..|. .+.....++|+.+|+++..|.+.++.|+.. |+|..... ....|.||+++..
T Consensus 24 ~~~~r~~IL~~L~-~~~~~~~ela~~l~is~stvs~~L~~L~~~-Glv~~~~~gr~~~y~l~~~~~~ 88 (106)
T 1r1u_A 24 GDYNRIRIMELLS-VSEASVGHISHQLNLSQSNVSHQLKLLKSV-HLVKAKRQGQSMIYSLDDIHVA 88 (106)
T ss_dssp CSHHHHHHHHHHH-HCCBCHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEEEETTEEEEEESSHHHH
T ss_pred CCHHHHHHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHHHC-CCeEEEEeCCEEEEEEChHHHH
Confidence 4567788999997 456788999999999999999999999986 99987553 4568899998864
No 103
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=96.40 E-value=0.0045 Score=46.88 Aligned_cols=62 Identities=18% Similarity=0.275 Sum_probs=50.2
Q ss_pred cHHHHHHHHHhccCC---CCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeChhH
Q psy10346 3 SDLTEKILKYLDTNP---PVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELTGEG 65 (292)
Q Consensus 3 ~~~e~~iL~~L~~~~---~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LTeEG 65 (292)
.+.+.+||..|..++ .+...++|+.+|++...|-+.+..|+.. |+|.......-.|.++.-.
T Consensus 9 ~~~~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~-G~I~~~g~~~~~W~i~~~~ 73 (81)
T 1qbj_A 9 QDQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKK-GKLQKEAGTPPLWKIAVST 73 (81)
T ss_dssp HHHHHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEESSSSCEEEEC---
T ss_pred hHHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC-CCEEecCCCCCeeEEeCcH
Confidence 467889999998766 6888999999999999999999999986 9998765555677776543
No 104
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=96.36 E-value=0.0061 Score=50.93 Aligned_cols=68 Identities=10% Similarity=0.152 Sum_probs=56.8
Q ss_pred CcHHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeee-eEEEEEeChhHHHHhhc
Q psy10346 2 ASDLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPL-SHKIWELTGEGNQVKDN 71 (292)
Q Consensus 2 ~~~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~-~~~~~~LTeEG~~yl~~ 71 (292)
+.+...+||..|. .+.....+||..+|++...|..-++.|+.. |+|..++. ....|.||++|...+.+
T Consensus 56 ~~p~R~~IL~~L~-~~~~t~~eLa~~lgls~stvs~hL~~L~~a-GlV~~~~~Gr~~~y~lt~~~~~~l~~ 124 (151)
T 3f6v_A 56 AEPTRRRLVQLLT-SGEQTVNNLAAHFPASRSAISQHLRVLTEA-GLVTPRKDGRFRYYRLDPQGLAQLRA 124 (151)
T ss_dssp TSHHHHHHHHHGG-GCCEEHHHHHTTSSSCHHHHHHHHHHHHHT-TSEEEEEETTEEEEEECHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHHHC-CCEEEEecCCEEEEEEChHHHHHHHH
Confidence 4567889999998 456788999999999999999999999987 99987543 45789999999876643
No 105
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=96.31 E-value=0.0051 Score=49.06 Aligned_cols=66 Identities=11% Similarity=0.075 Sum_probs=52.9
Q ss_pred cHHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeee-eEEEEEeChhHHHHh
Q psy10346 3 SDLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPL-SHKIWELTGEGNQVK 69 (292)
Q Consensus 3 ~~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~-~~~~~~LTeEG~~yl 69 (292)
.+...+||..|...+.....++|..+|+++..|.+.++.|+.. |+|..... ....|.||++|..-+
T Consensus 41 ~~~rl~IL~~L~~~~~~s~~eLa~~l~is~stvs~~L~~L~~~-Glv~~~~~gr~~~y~l~~~~~~~~ 107 (122)
T 1u2w_A 41 DENRAKITYALCQDEELCVCDIANILGVTIANASHHLRTLYKQ-GVVNFRKEGKLALYSLGDEHIRQI 107 (122)
T ss_dssp SHHHHHHHHHHHHSSCEEHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEC----CCEEEESCHHHHHH
T ss_pred CHHHHHHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC-CCeEEEEECCEEEEEECHHHHHHH
Confidence 3556789999976667788999999999999999999999986 99987543 346899999986543
No 106
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=96.30 E-value=0.0092 Score=47.29 Aligned_cols=64 Identities=13% Similarity=0.019 Sum_probs=52.8
Q ss_pred CcHHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEee-eeEEEEEeChhHHH
Q psy10346 2 ASDLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEP-LSHKIWELTGEGNQ 67 (292)
Q Consensus 2 ~~~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~-~~~~~~~LTeEG~~ 67 (292)
+.+...+||..|.. +.....++|+.+|+++..|.+.++.|+.. |+|..+. .....|.||++|..
T Consensus 19 ~~~~r~~IL~~L~~-~~~~~~eLa~~lgis~stvs~~L~~L~~~-GlV~~~~~gr~~~y~l~~~~~~ 83 (118)
T 2jsc_A 19 ADPTRCRILVALLD-GVCYPGQLAAHLGLTRSNVSNHLSCLRGC-GLVVATYEGRQVRYALADSHLA 83 (118)
T ss_dssp SSHHHHHHHHHHHT-TCCSTTTHHHHHSSCHHHHHHHHHHHTTT-TSEEEEECSSSEEEEESSHHHH
T ss_pred CCHHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHC-CceEEEEECCEEEEEEChHHHH
Confidence 35677889999974 55677899999999999999999999986 9998754 34568999998764
No 107
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=96.30 E-value=0.007 Score=53.41 Aligned_cols=50 Identities=12% Similarity=0.224 Sum_probs=44.2
Q ss_pred CCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeChhHHHHh
Q psy10346 16 NPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELTGEGNQVK 69 (292)
Q Consensus 16 ~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LTeEG~~yl 69 (292)
++.+...++|+.+|+...+|..+++.|+++ |||+.+. .-..||++|++++
T Consensus 28 ~~~V~~~~LA~~LgvS~~SV~~~lkkL~e~-GLV~~~~---~Gv~LTe~G~~~A 77 (200)
T 2p8t_A 28 KEPLGRKQISERLELGEGSVRTLLRKLSHL-DIIRSKQ---RGHFLTLKGKEIR 77 (200)
T ss_dssp TSCBCHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEC-----CEEECHHHHHHH
T ss_pred cCCccHHHHHHHhCCCHHHHHHHHHHHHHC-CCEEEeC---CCeEECHHHHHHH
Confidence 356788999999999999999999999987 9999887 6899999999987
No 108
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=96.29 E-value=0.016 Score=45.47 Aligned_cols=91 Identities=12% Similarity=0.094 Sum_probs=61.2
Q ss_pred cHHHHHHHHHhccCCCCChHHHHHhcC----CCHHHHHHHHHHhhccCCcEEEeeeeEE-EEE-eChhHHH-------Hh
Q psy10346 3 SDLTEKILKYLDTNPPVDTLDLAKLFN----EDHQKVVGGMKSIETLGEYLIVEPLSHK-IWE-LTGEGNQ-------VK 69 (292)
Q Consensus 3 ~~~e~~iL~~L~~~~~~~~~ela~~~~----~~~~~v~~~~~~L~s~~glv~~e~~~~~-~~~-LTeEG~~-------yl 69 (292)
...|..||..|-..+.++..+++..++ +++..|.+.+..|+.+ |+|.-+..... .|. ++.+|.. .+
T Consensus 9 t~~q~~vL~~L~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~k-Glv~R~~~~r~~~~~~~~~~~~~~~~~~~~~~ 87 (126)
T 1sd4_A 9 SMAEWDVMNIIWDKKSVSANEIVVEIQKYKEVSDKTIRTLITRLYKK-EIIKRYKSENIYFYSSNIKEDDIKMKTAKTFL 87 (126)
T ss_dssp CHHHHHHHHHHHHSSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHT-TSEEEEEETTEEEEEECSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHC-CceEEEeCCCeEEEEEecCHHHHHHHHHHHHH
Confidence 367899999998777888899999886 5899999999999987 99987653322 332 4444432 21
Q ss_pred ---hcCChHHHHHhhcCCCCCChHHHhh
Q psy10346 70 ---DNGSHEVLVFNNVPSEGIGQKELLA 94 (292)
Q Consensus 70 ---~~GlPE~rl~~~l~~~~~~~~el~~ 94 (292)
-+|+....+-.++...+++-+|+..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~ls~ee~~~ 115 (126)
T 1sd4_A 88 NKLYGGDMKSLVLNFAKNEELNNKEIEE 115 (126)
T ss_dssp HHHHTTCHHHHHHHHHHTTCSCHHHHHH
T ss_pred HHHHCCCHHHHHHHHHhcCCCCHHHHHH
Confidence 1344444444444334566666554
No 109
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=96.29 E-value=0.0039 Score=46.57 Aligned_cols=58 Identities=19% Similarity=0.317 Sum_probs=48.1
Q ss_pred HHHHHHHHHhccCC---CCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeC
Q psy10346 4 DLTEKILKYLDTNP---PVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELT 62 (292)
Q Consensus 4 ~~e~~iL~~L~~~~---~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LT 62 (292)
+.+.+||.+|..++ .+...++|+.+|++...|-+.+..|+.. |+|.......-.|.++
T Consensus 14 ~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~-G~I~~~g~~~~~W~i~ 74 (77)
T 1qgp_A 14 DQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKK-GKLQKEAGTPPLWKIA 74 (77)
T ss_dssp HHHHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHH-TSEEEECSSSCEEEEC
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC-CCEEecCCCCCceEec
Confidence 56789999997766 6788999999999999999999999987 9998765444566655
No 110
>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}
Probab=96.28 E-value=0.017 Score=45.97 Aligned_cols=67 Identities=10% Similarity=0.052 Sum_probs=49.6
Q ss_pred HHHH-HHHHhccCCCCChHHHHHhc-------CCCHHHHHHHHHHhhccCCcEEEeee-------eEEEEEeChhHHHHh
Q psy10346 5 LTEK-ILKYLDTNPPVDTLDLAKLF-------NEDHQKVVGGMKSIETLGEYLIVEPL-------SHKIWELTGEGNQVK 69 (292)
Q Consensus 5 ~e~~-iL~~L~~~~~~~~~ela~~~-------~~~~~~v~~~~~~L~s~~glv~~e~~-------~~~~~~LTeEG~~yl 69 (292)
++.. ||..|..+ +..-.++.+.+ ++++..|-..++.|+.. |+|+.... ..+.|.||+.|++.+
T Consensus 22 l~~~~IL~lL~~~-~~~Gyei~~~l~~~~~~~~is~gtLY~~L~rLe~~-GlI~~~~~~~~~~~~~rk~Y~LT~~G~~~l 99 (115)
T 2dql_A 22 VAICYILYVLLQG-ESYGTELIQQLETEHPTYRLSDTVLYSAIKFLEDN-RAITGYWKKLEGRGRPRRMYQVSPEWQHQA 99 (115)
T ss_dssp HHHHHHHHHHTTS-CBCHHHHHHHHHHHCTTEECCHHHHHHHHHHHHHT-TSEEEEEECCTTCSSCEEEEEECGGGHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHC-CCEEEEeeecCCCCCCcEEEEECHHHHHHH
Confidence 4444 88888753 33345554433 58999999999999986 99998643 368999999999988
Q ss_pred hcCC
Q psy10346 70 DNGS 73 (292)
Q Consensus 70 ~~Gl 73 (292)
.+-.
T Consensus 100 ~~~~ 103 (115)
T 2dql_A 100 EDLA 103 (115)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 111
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=96.27 E-value=0.0065 Score=49.64 Aligned_cols=63 Identities=19% Similarity=0.241 Sum_probs=50.5
Q ss_pred HHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeChhHHHHhhc
Q psy10346 6 TEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELTGEGNQVKDN 71 (292)
Q Consensus 6 e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LTeEG~~yl~~ 71 (292)
-..|+..+..++.....++|+.+|++...|.+++..|+.+ |+|.... ...+.||+.|+..+..
T Consensus 42 ~~~i~~~l~~~~~~~~~~la~~l~vs~~tvs~~l~~Le~~-Glv~r~~--~~~~~lT~~g~~~~~~ 104 (155)
T 2h09_A 42 VELISDLIREVGEARQVDMAARLGVSQPTVAKMLKRLATM-GLIEMIP--WRGVFLTAEGEKLAQE 104 (155)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHTSCHHHHHHHHHHHHHT-TCEEEET--TTEEEECHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcCHHHHHHHhCcCHHHHHHHHHHHHHC-CCEEEec--CCceEEChhHHHHHHH
Confidence 3445556665566788999999999999999999999987 9987653 3568999999987654
No 112
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=96.20 E-value=0.0055 Score=47.83 Aligned_cols=64 Identities=9% Similarity=0.096 Sum_probs=51.9
Q ss_pred HHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeee-eEEEEEeChhHHHHh
Q psy10346 4 DLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPL-SHKIWELTGEGNQVK 69 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~-~~~~~~LTeEG~~yl 69 (292)
+...+||..|.. +.....++|+.+|++...|.+.++.|+.. |+|..+.. ....|.||++|..-+
T Consensus 25 ~~r~~IL~~L~~-~~~s~~eLa~~lgis~stvs~~L~~L~~~-GlV~~~~~gr~~~y~l~~~~~~~l 89 (108)
T 2kko_A 25 GRRLQILDLLAQ-GERAVEAIATATGMNLTTASANLQALKSG-GLVEARREGTRQYYRIAGEDVARL 89 (108)
T ss_dssp STTHHHHHHHTT-CCEEHHHHHHHHTCCHHHHHHHHHHHHHH-TSEEEEEETTEEEEEESCHHHHHH
T ss_pred HHHHHHHHHHHc-CCcCHHHHHHHHCcCHHHHHHHHHHHHHC-CCeEEEEeCCEEEEEEChHHHHHH
Confidence 445678888874 66778999999999999999999999987 99987543 356899999986543
No 113
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=96.13 E-value=0.0066 Score=43.87 Aligned_cols=55 Identities=22% Similarity=0.331 Sum_probs=44.7
Q ss_pred HHHHHHHHhccC-CCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeC
Q psy10346 5 LTEKILKYLDTN-PPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELT 62 (292)
Q Consensus 5 ~e~~iL~~L~~~-~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LT 62 (292)
...+||..|... ..+...++|+.+|++.+.|.+.++.|+.. |+|.. ...-.|.|+
T Consensus 11 ~~~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~-G~I~~--~~~G~y~lg 66 (67)
T 2heo_A 11 LEQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKE-DRVSS--PSPKYWSIG 66 (67)
T ss_dssp HHHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHT-TSEEE--EETTEEEEC
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC-CcEec--CCCceEeeC
Confidence 567899999754 45788999999999999999999999987 99754 333567775
No 114
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=96.04 E-value=0.0087 Score=45.76 Aligned_cols=66 Identities=6% Similarity=0.026 Sum_probs=53.7
Q ss_pred CcHHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEee-eeEEEEEeChhHHHHh
Q psy10346 2 ASDLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEP-LSHKIWELTGEGNQVK 69 (292)
Q Consensus 2 ~~~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~-~~~~~~~LTeEG~~yl 69 (292)
+.+...+||..|.. ++....++|+.+|+++..|.+.++.|+.. |+|..+. -....|.||+++..-+
T Consensus 21 ~~~~r~~Il~~L~~-~~~~~~ela~~l~is~~tvs~~L~~L~~~-Glv~~~~~g~~~~y~l~~~~~~~~ 87 (102)
T 3pqk_A 21 SHPVRLMLVCTLVE-GEFSVGELEQQIGIGQPTLSQQLGVLRES-GIVETRRNIKQIFYRLTEAKAAQL 87 (102)
T ss_dssp CSHHHHHHHHHHHT-CCBCHHHHHHHHTCCTTHHHHHHHHHHHT-TSEEEECSSSCCEEEECSSTHHHH
T ss_pred CCHHHHHHHHHHHh-CCCCHHHHHHHHCcCHHHHHHHHHHHHHC-CCeEEEEeCCEEEEEECcHHHHHH
Confidence 34667788999864 56788999999999999999999999987 9998754 3457899999866543
No 115
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=95.98 E-value=0.0075 Score=53.13 Aligned_cols=87 Identities=11% Similarity=0.101 Sum_probs=60.6
Q ss_pred HHHHHHHHHhc---cCCC-CChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeChhHHHHhhcCChHHHHH
Q psy10346 4 DLTEKILKYLD---TNPP-VDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELTGEGNQVKDNGSHEVLVF 79 (292)
Q Consensus 4 ~~e~~iL~~L~---~~~~-~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LTeEG~~yl~~GlPE~rl~ 79 (292)
..+..+|..|- ..+. ....++|+.+|+++.+|.++++.|+.+ |||..+.. ..+.||++|++.+..=.+-.+++
T Consensus 6 ~~~e~yL~~i~~l~~~~~~~~~~~la~~l~vs~~tvs~~l~~Le~~-GlV~r~~~--~~v~LT~~G~~~~~~~~~~~~~~ 82 (226)
T 2qq9_A 6 ATTEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARMERD-GLVVVASD--RSLQMTPTGRTLATAVMRKHRLA 82 (226)
T ss_dssp HHHHHHHHHHHHHHHHTCCCBHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEECTT--SBEEECHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCccHHHHHHHHCCCHHHHHHHHHHHHHC-CCEEEeCC--CCeEECHHHHHHHHHHHHHHHHH
Confidence 45566666652 2222 233899999999999999999999987 99987653 67899999999887666555544
Q ss_pred hhcC-C-CCCChHHHh
Q psy10346 80 NNVP-S-EGIGQKELL 93 (292)
Q Consensus 80 ~~l~-~-~~~~~~el~ 93 (292)
...- + -|++-+++.
T Consensus 83 e~~l~~~lgl~~ee~~ 98 (226)
T 2qq9_A 83 ERLLTDIIGLDINKVH 98 (226)
T ss_dssp HHHHHHTTCCCHHHHH
T ss_pred HHHHHHHcCCCHHHHH
Confidence 3221 1 256655543
No 116
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=95.94 E-value=0.0065 Score=45.65 Aligned_cols=51 Identities=20% Similarity=0.223 Sum_probs=45.7
Q ss_pred CCcHHHHHHHHHhccC------CCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEe
Q psy10346 1 MASDLTEKILKYLDTN------PPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVE 52 (292)
Q Consensus 1 m~~~~e~~iL~~L~~~------~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e 52 (292)
|.+....+||..|... +..+..|+|+.+|++...|-+.+..|+.+ |+|.-.
T Consensus 1 ~~~~r~~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~Le~k-G~I~R~ 57 (77)
T 2jt1_A 1 MSESIVTKIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQLHDV-GVLEKV 57 (77)
T ss_dssp CCCTHHHHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEE
T ss_pred CCHHHHHHHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHC-CcEEec
Confidence 8888999999999765 67788999999999999999999999987 998764
No 117
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=95.83 E-value=0.016 Score=51.99 Aligned_cols=62 Identities=13% Similarity=0.055 Sum_probs=50.8
Q ss_pred CcHHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeee--e-----EEEEEeChhH
Q psy10346 2 ASDLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPL--S-----HKIWELTGEG 65 (292)
Q Consensus 2 ~~~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~--~-----~~~~~LTeEG 65 (292)
+.....+||..|.. ++....++|..+|+++..|...++.|+.. |+|..... . ...|.||+.|
T Consensus 10 ~~~~R~~IL~~L~~-g~~s~~ELa~~lglS~stVs~hL~~Le~a-GLV~~~~~~gr~~GRp~~~Y~Lt~~~ 78 (232)
T 2qlz_A 10 GNKVRRDLLSHLTC-MECYFSLLSSKVSVSSTAVAKHLKIMERE-GVLQSYEKEERFIGPTKKYYKISIAK 78 (232)
T ss_dssp TSHHHHHHHHHHTT-TTTCSSSSCTTCCCCHHHHHHHHHHHHHT-TSEEEEEECC-----CEEEEEECCCE
T ss_pred CCHHHHHHHHHHHh-CCCCHHHHHHHHCcCHHHHHHHHHHHHHC-CCEEEeeecCCCCCCccEEEEEccch
Confidence 34667889999974 66777899999999999999999999987 99998332 3 6789998866
No 118
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=95.76 E-value=0.012 Score=53.11 Aligned_cols=72 Identities=15% Similarity=0.154 Sum_probs=59.0
Q ss_pred HHHHHHHHHhccCC--CCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEee----eeEEEEEeChhHHHHhhcCChHH
Q psy10346 4 DLTEKILKYLDTNP--PVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEP----LSHKIWELTGEGNQVKDNGSHEV 76 (292)
Q Consensus 4 ~~e~~iL~~L~~~~--~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~----~~~~~~~LTeEG~~yl~~GlPE~ 76 (292)
..|..||..|...+ .+...++|..+++++..|.+.+..|+.+ |+|.-+. .-...+.||++|++.++.-.|..
T Consensus 158 ~~q~~vL~~L~~~~~~~~t~~eLa~~l~i~~~tvt~~v~rLe~~-GlV~R~~~~~DrR~~~i~LT~~G~~~~~~~~~~~ 235 (250)
T 1p4x_A 158 FVEFTILAIITSQNKNIVLLKDLIETIHHKYPQTVRALNNLKKQ-GYLIKERSTEDERKILIHMDDAQQDHAEQLLAQV 235 (250)
T ss_dssp HHHHHHHHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHH-TSSEEEECSSSTTCEEEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCcCHHHHHHHHCCChhhHHHHHHHHHHC-CCEEeeCCCCCCCeEEEEECHHHHHHHHHHHHHH
Confidence 56788999997544 4788999999999999999999999987 9998754 34568899999999886554443
No 119
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=95.72 E-value=0.026 Score=45.17 Aligned_cols=63 Identities=16% Similarity=0.179 Sum_probs=51.9
Q ss_pred cHHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeee-eEEEEEeChhHHH
Q psy10346 3 SDLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPL-SHKIWELTGEGNQ 67 (292)
Q Consensus 3 ~~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~-~~~~~~LTeEG~~ 67 (292)
.....+||..|.. +.....++|+.+|+++..|.+.++.|+.. |+|..++. ....|.||+++-.
T Consensus 45 ~~~rl~IL~~L~~-~~~s~~ela~~lgis~stvs~~L~~Le~~-Glv~~~~~gr~~~y~l~~~~l~ 108 (122)
T 1r1t_A 45 DPNRLRLLSLLAR-SELCVGDLAQAIGVSESAVSHQLRSLRNL-RLVSYRKQGRHVYYQLQDHHIV 108 (122)
T ss_dssp CHHHHHHHHHHTT-CCBCHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEEEETTEEEEEESSHHHH
T ss_pred CHHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHC-CCeEEEEeCCEEEEEEChHHHH
Confidence 4566789999874 56788999999999999999999999986 99987653 3467999998743
No 120
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=95.71 E-value=0.0098 Score=45.40 Aligned_cols=60 Identities=12% Similarity=0.205 Sum_probs=51.7
Q ss_pred HHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeChhH
Q psy10346 4 DLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELTGEG 65 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LTeEG 65 (292)
+.-.+||..|..++ ....+||+.+|++..+|-+-+..|+.. |+|......--.|.||.+-
T Consensus 17 ~~~~~IL~lL~~~g-~sa~eLAk~LgiSk~aVr~~L~~Le~e-G~I~~~~~~PP~W~~~~~~ 76 (82)
T 1oyi_A 17 EIVCEAIKTIGIEG-ATAAQLTRQLNMEKREVNKALYDLQRS-AMVYSSDDIPPRWFMTTEA 76 (82)
T ss_dssp HHHHHHHHHHSSST-EEHHHHHHHSSSCHHHHHHHHHHHHHH-TSSEECSSSSCEEESCC--
T ss_pred HHHHHHHHHHHHcC-CCHHHHHHHHCcCHHHHHHHHHHHHHC-CCEEeCCCCCCcceeccCc
Confidence 56778999998766 788999999999999999999999987 9999988888888888653
No 121
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=95.54 E-value=0.012 Score=54.30 Aligned_cols=56 Identities=11% Similarity=0.209 Sum_probs=40.3
Q ss_pred CCCCCChHHHHHHHHHHHhhhCCceecCCCCccccceeccccCCCCCCCCCCCCC-Cceeec
Q psy10346 216 PSGHLHPLMKVRAEFRQIFLDMGFTEMPTNNFVESSFWNFDALFQPQQHPARDAH-DTFFVT 276 (292)
Q Consensus 216 ~~g~~Hpl~~~~~~i~~if~~mGF~e~~~~~~Ves~f~NFD~L~~PqdHPAR~~~-DTfyl~ 276 (292)
..|+.||+..+.+.|+++|.++||.|+. +|.+++...++. ...+.+| ++. ++|+++
T Consensus 66 ~~g~~h~~~~l~~~ir~~~~~~Gf~EV~-tP~Le~~~l~~~-~g~~~~~---~m~~~~npl~ 122 (288)
T 3dsq_A 66 TVKHRPALLELEEKLAKALHQQGFVQVV-TPTIITKSALAK-MTIGEDH---PLFSQVFWLD 122 (288)
T ss_dssp HTTSSCHHHHHHHHHHHHHHTTTCEECC-CCSEEEHHHHHT-TSSCC-----CCTTTSCEEE
T ss_pred cCCCcCHHHHHHHHHHHHHHHCCCEEEE-CCeeecHHHHhh-cCCCccc---ccEEeecccc
Confidence 5699999999999999999999999985 688888655443 3334444 344 344554
No 122
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=95.51 E-value=0.017 Score=44.57 Aligned_cols=58 Identities=12% Similarity=0.157 Sum_probs=45.8
Q ss_pred HHHHHHHHHhcc--CCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEE-ee---eeEEEEEeC
Q psy10346 4 DLTEKILKYLDT--NPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIV-EP---LSHKIWELT 62 (292)
Q Consensus 4 ~~e~~iL~~L~~--~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~-e~---~~~~~~~LT 62 (292)
+.|..||..|.. +..+...+|+..++++...|.+.++.|+++ |||+- .. .....|.|+
T Consensus 20 ~~q~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~LE~k-glIkr~~~~~~~~rKvy~Ly 83 (91)
T 2dk5_A 20 NQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESK-KLIKAVKSVAASKKKVYMLY 83 (91)
T ss_dssp SSHHHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHHHT-TSEEEECCSSCSSCCEEEES
T ss_pred HHHHHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHC-CCEEEecCCCCCCcEEEEEe
Confidence 467889999976 446888999999999999999999999987 99983 22 224555554
No 123
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=95.44 E-value=0.0087 Score=57.34 Aligned_cols=67 Identities=12% Similarity=0.038 Sum_probs=56.8
Q ss_pred HHHHHHHHHhccC--CCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEee----eeEEEEEeChhHHHHhhc
Q psy10346 4 DLTEKILKYLDTN--PPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEP----LSHKIWELTGEGNQVKDN 71 (292)
Q Consensus 4 ~~e~~iL~~L~~~--~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~----~~~~~~~LTeEG~~yl~~ 71 (292)
..|..||..|... +.++..+||+.++++...|.+.+..|+.+ |||+-++ +-...+.||++|++.++.
T Consensus 404 ~~q~~vl~~l~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~le~~-g~v~r~~~~~D~R~~~i~lT~~g~~~~~~ 476 (487)
T 1hsj_A 404 YEEIYILNHILRSESNEISSKEIAKCSEFKPYYLTKALQKLKDL-KLLSKKRSLQDERTVIVYVTDTQKANIQK 476 (487)
T ss_dssp HHHHHHHHHHHTCSCSEEEHHHHHHSSCCCHHHHHHHHHHHHTT-TTSCCEECCSSSSCCEEECCSSHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHC-CCEeecCCCCCCCeEEEEECHHHHHHHHH
Confidence 5688999999776 67888999999999999999999999987 9997643 445688999999987643
No 124
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=95.39 E-value=0.023 Score=41.80 Aligned_cols=58 Identities=21% Similarity=0.301 Sum_probs=47.1
Q ss_pred HHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeee---eEEEEEeChh
Q psy10346 6 TEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPL---SHKIWELTGE 64 (292)
Q Consensus 6 e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~---~~~~~~LTeE 64 (292)
..+||..|...+.+...++|+.+|++...|.+.+..|++. |+|..... ....|.++++
T Consensus 2 r~~Il~~L~~~~~~s~~eLa~~lgvs~~tv~r~L~~L~~~-GlI~~~~~~~gr~~~y~l~~~ 62 (81)
T 2htj_A 2 KNEILEFLNRHNGGKTAEIAEALAVTDYQARYYLLLLEKA-GMVQRSPLRRGMATYWFLKGE 62 (81)
T ss_dssp HHHHHHHHHHSCCCCHHHHHHHHTSCHHHHHHHHHHHHHH-TSEEEECCSSSSSCEEEESSC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC-CCEEEeccCCCCcEEEEEChh
Confidence 4678999977777889999999999999999999999987 99985422 3456777654
No 125
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=95.38 E-value=0.012 Score=51.85 Aligned_cols=72 Identities=19% Similarity=0.173 Sum_probs=54.4
Q ss_pred HHHHHHHHHh---ccCCCCCh--HHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeChhHHHHhhcCChHHHH
Q psy10346 4 DLTEKILKYL---DTNPPVDT--LDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELTGEGNQVKDNGSHEVLV 78 (292)
Q Consensus 4 ~~e~~iL~~L---~~~~~~~~--~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LTeEG~~yl~~GlPE~rl 78 (292)
..+..+|..| ...+ ... .++|+.+|+++..|.++++.|+.+ |||+.... ..+.||+.|++.+..-.+-.++
T Consensus 6 ~~~e~~L~~L~~l~~~~-~~~~~~~La~~l~vs~~tvs~~l~~Le~~-GlV~r~~~--~~v~LT~~G~~~~~~~~~~~~~ 81 (230)
T 1fx7_A 6 DTTEMYLRTIYDLEEEG-VTPLRARIAERLDQSGPTVSQTVSRMERD-GLLRVAGD--RHLELTEKGRALAIAVMRKHRL 81 (230)
T ss_dssp SHHHHHHHHHHHHHHHT-SCCCHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEECTT--SCEEECHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcC-CCCcHHHHHHHHCcCHHHHHHHHHHHHHC-CCEEEeCC--ccEEECHHHHHHHHHHHHHHHH
Confidence 4455555554 2222 444 899999999999999999999987 99997654 4789999999988766555554
Q ss_pred H
Q psy10346 79 F 79 (292)
Q Consensus 79 ~ 79 (292)
+
T Consensus 82 ~ 82 (230)
T 1fx7_A 82 A 82 (230)
T ss_dssp H
T ss_pred H
Confidence 3
No 126
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=95.18 E-value=0.047 Score=47.78 Aligned_cols=72 Identities=15% Similarity=0.178 Sum_probs=55.0
Q ss_pred HHHHHHHHHhccCCC------CChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeee-eEEEEEeChhHHHHhhcCChHH
Q psy10346 4 DLTEKILKYLDTNPP------VDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPL-SHKIWELTGEGNQVKDNGSHEV 76 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~------~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~-~~~~~~LTeEG~~yl~~GlPE~ 76 (292)
..+.++|..|...+. .+..++|+.+++++.+|.+.++.|+.. ||+.-... -...+.||++|+.+++.-.+-.
T Consensus 7 ~~~l~~l~~l~~~~~l~~~~~~s~s~aA~~L~isq~avSr~I~~LE~~-~L~~R~~~~R~~~v~LT~~G~~l~~~~~~~~ 85 (230)
T 3cta_A 7 DQYYRAIKKIKEAAEASNRAYLTSSKLADMLGISQQSASRIIIDLEKN-GYITRTVTKRGQILNITEKGLDVLYTEFADL 85 (230)
T ss_dssp CHHHHHHHHHHHHTTTSSEEECCHHHHHHHHTSCHHHHHHHHHHHHHT-TSEEEEEETTEEEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHC-CCEEEEEcCCeEEEEECHHHHHHHHHHHHHH
Confidence 456777877754332 557899999999999999999999986 99864321 1678899999999985554433
No 127
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=95.17 E-value=0.03 Score=43.68 Aligned_cols=59 Identities=17% Similarity=0.259 Sum_probs=47.7
Q ss_pred cHHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeee-eEEEEEeCh
Q psy10346 3 SDLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPL-SHKIWELTG 63 (292)
Q Consensus 3 ~~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~-~~~~~~LTe 63 (292)
...+.+||..|.. +..+..++|+.+|+++..|.+.++.|+.. |+|..+.. ....|.+|.
T Consensus 31 ~~~~~~il~~L~~-~~~s~~ela~~l~is~stvsr~l~~Le~~-Glv~~~~~~r~~~~~~~~ 90 (119)
T 2lkp_A 31 TPSRLMILTQLRN-GPLPVTDLAEAIGMEQSAVSHQLRVLRNL-GLVVGDRAGRSIVYSLYD 90 (119)
T ss_dssp CHHHHHHHHHHHH-CCCCHHHHHHHHSSCHHHHHHHHHHHHHH-CSEEEEEETTEEEEEESC
T ss_pred CHHHHHHHHHHHH-CCCCHHHHHHHHCcCHHHHHHHHHHHHHC-CCEEEEecCCEEEEEEch
Confidence 4567889998876 56788999999999999999999999986 99987643 335566763
No 128
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=95.16 E-value=0.061 Score=45.38 Aligned_cols=68 Identities=12% Similarity=0.096 Sum_probs=54.8
Q ss_pred cHHHHHHHHHhccC--CCCChHHHHHhcC-CCHHHHHHHHHHhhccCCcEEEee---------eeEEEEEeChhHHHHhh
Q psy10346 3 SDLTEKILKYLDTN--PPVDTLDLAKLFN-EDHQKVVGGMKSIETLGEYLIVEP---------LSHKIWELTGEGNQVKD 70 (292)
Q Consensus 3 ~~~e~~iL~~L~~~--~~~~~~ela~~~~-~~~~~v~~~~~~L~s~~glv~~e~---------~~~~~~~LTeEG~~yl~ 70 (292)
......||..|..+ +..+..+++...+ ++...|-+-++.|... |+|.... .....|.||++|+..+.
T Consensus 28 ~~tR~~IL~~Ll~~p~~~~ta~eL~~~l~~lS~aTVyrhL~~L~ea-GLV~~~~~~~~~~~rGrP~k~Y~LT~~Gr~~l~ 106 (151)
T 3u1d_A 28 HETRLDVLHQILAQPDGVLSVEELLYRNPDETEANLRYHVDELVDR-GIVEKIPVPRAKSVDDPPTTFYAVTGEGIALLR 106 (151)
T ss_dssp CHHHHHHHHHHHHSTTSCBCHHHHHHHCTTSCHHHHHHHHHHHHHT-TSEEEEECCCCTTSSSCCCEEEEECHHHHHHHH
T ss_pred chHHHHHHHHHHcCCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHC-CCeEEeecCcCcccCCCCceEEEECHHHHHHHH
Confidence 35667788888554 3367789999888 9999999999999987 9999653 34569999999999885
Q ss_pred c
Q psy10346 71 N 71 (292)
Q Consensus 71 ~ 71 (292)
.
T Consensus 107 ~ 107 (151)
T 3u1d_A 107 A 107 (151)
T ss_dssp H
T ss_pred H
Confidence 4
No 129
>2co5_A Viral protein F93; viral protein-winged helix complex, winged helix, DNA-bindin WHTH, disulfide bond, STIV; 2.2A {Sulfolobus turreted icosahedral virus} SCOP: a.4.5.48
Probab=95.03 E-value=0.026 Score=44.12 Aligned_cols=66 Identities=21% Similarity=0.115 Sum_probs=48.6
Q ss_pred HHHHHHHhccCC-CCCh----HHHHHhc--CCCHHHHHHHHHHhhccCCcEEEee-eeEEEEEeChhHHHHhhcC
Q psy10346 6 TEKILKYLDTNP-PVDT----LDLAKLF--NEDHQKVVGGMKSIETLGEYLIVEP-LSHKIWELTGEGNQVKDNG 72 (292)
Q Consensus 6 e~~iL~~L~~~~-~~~~----~ela~~~--~~~~~~v~~~~~~L~s~~glv~~e~-~~~~~~~LTeEG~~yl~~G 72 (292)
.+-||..|..++ ...- .++++.. .+++..+-.+++.|+.. |+|+... ...+.|.||++|++.+++-
T Consensus 11 ~~~IL~lL~~~~~~~~g~~i~~ei~~~~~~~is~GtlYp~L~rLe~~-GlI~~~~~~~rk~Y~iT~~Gr~~l~~~ 84 (99)
T 2co5_A 11 YYIILKVLVINGSRLEKKRLRSEILKRFDIDISDGVLYPLIDSLIDD-KILREEEAPDGKVLFLTEKGMKEFEEL 84 (99)
T ss_dssp HHHHHHHHHHTTTEEEGGGHHHHHHHHHCCBCCHHHHHHHHHHHHHT-TSEEEECCTTSCEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHC-CCEEEeeCCCcEEEEECHHHHHHHHHH
Confidence 456888885322 2222 4555555 47899999999999987 9999864 3467899999999988653
No 130
>3l9f_A Putative uncharacterized protein SMU.1604C; PADR, transcription regulator; 1.80A {Streptococcus mutans}
Probab=94.97 E-value=0.03 Score=49.22 Aligned_cols=63 Identities=13% Similarity=0.231 Sum_probs=50.0
Q ss_pred HHHHHHHhccCCCCChHHHHHhc--------CCCHHHHHHHHHHhhccCCcEEEeee------eEEEEEeChhHHHHhh
Q psy10346 6 TEKILKYLDTNPPVDTLDLAKLF--------NEDHQKVVGGMKSIETLGEYLIVEPL------SHKIWELTGEGNQVKD 70 (292)
Q Consensus 6 e~~iL~~L~~~~~~~~~ela~~~--------~~~~~~v~~~~~~L~s~~glv~~e~~------~~~~~~LTeEG~~yl~ 70 (292)
...||..|.. ++..-.++++.+ ++++..|-..++.|+.. |+|+.+.. .++.|.||+.|++.+.
T Consensus 38 r~~IL~lL~~-~p~~GYeL~~~l~~~~~~~~~~s~g~lY~~L~rLe~~-GlI~~~~~~~~~~p~rk~Y~iT~~Gr~~l~ 114 (204)
T 3l9f_A 38 KDIILGILSK-KERSGYEINDILQNQLSYFYDGTYGMIYPTLRKLEKD-GKITKEVVIQDGRPNKNIYAITESGKKELA 114 (204)
T ss_dssp HHHHHHHTSS-CCEEHHHHHHHHHHTSTTTEECCTTCHHHHHHHHHHT-TSEEEEEECCTTSCCEEEEEECHHHHHHHH
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHHHHhCCccCCCcchHHHHHHHHHHC-CCeEEEeeccCCCCCceEEEEChHHHHHHH
Confidence 4578998874 444557777665 57899999999999986 99998653 4789999999999873
No 131
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=94.92 E-value=0.02 Score=45.18 Aligned_cols=66 Identities=14% Similarity=0.122 Sum_probs=48.9
Q ss_pred HHHHHHHHHhc-cCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEee--eeEEEEEeChhHHHHhh
Q psy10346 4 DLTEKILKYLD-TNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEP--LSHKIWELTGEGNQVKD 70 (292)
Q Consensus 4 ~~e~~iL~~L~-~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~--~~~~~~~LTeEG~~yl~ 70 (292)
..+.++|..|. ..+.....++|..+|++++.|.+.+..|+.+ |+|.... .....+.++..|...+.
T Consensus 26 ~~~~~il~~L~~~~~~~t~~ela~~l~~~~stvs~~l~~L~~~-G~v~r~~~~~d~r~~~~~~~~~~~~~ 94 (152)
T 1ku9_A 26 KSVGAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLEEL-GFVRKVWIKGERKNYYEAVDGFSSIK 94 (152)
T ss_dssp HHHHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEECCTTCSSCEEEECCHHHHHH
T ss_pred hhHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC-CCEEEEecCCCceEEEeecchHHHHH
Confidence 45677888774 3566788999999999999999999999987 9998763 33344445545554443
No 132
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=94.90 E-value=0.092 Score=39.25 Aligned_cols=64 Identities=13% Similarity=0.202 Sum_probs=48.2
Q ss_pred HHHHHHHHhcc-CCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeee-------eEEEEEeChhHHHHh
Q psy10346 5 LTEKILKYLDT-NPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPL-------SHKIWELTGEGNQVK 69 (292)
Q Consensus 5 ~e~~iL~~L~~-~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~-------~~~~~~LTeEG~~yl 69 (292)
.+..+|..|.. ++.....++|+.+|++...|.+.+..|+.. |+|..... ....|.+|++..+.+
T Consensus 22 ~~~~~l~~l~~~~~~~t~~ela~~l~is~~tv~~~l~~L~~~-g~v~~~~~~~~~~gr~~~~~~l~~~~~~~~ 93 (109)
T 2d1h_A 22 TDVAVLLKMVEIEKPITSEELADIFKLSKTTVENSLKKLIEL-GLVVRTKTEGKKIGRPKYYYSISSNILEKI 93 (109)
T ss_dssp HHHHHHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEEEC-------CCEEEEECTTHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC-CCeEeeccccCCCCCCCeeeecCHHHHHHH
Confidence 34555555533 667788999999999999999999999987 99987653 245688888554433
No 133
>2xzm_7 Plectin/S10 domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_7
Probab=94.87 E-value=0.021 Score=48.49 Aligned_cols=47 Identities=13% Similarity=0.035 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHHHhhccCCcEEEeee-eEEEEEeChhHHHHhhc--CChHH
Q psy10346 29 NEDHQKVVGGMKSIETLGEYLIVEPL-SHKIWELTGEGNQVKDN--GSHEV 76 (292)
Q Consensus 29 ~~~~~~v~~~~~~L~s~~glv~~e~~-~~~~~~LTeEG~~yl~~--GlPE~ 76 (292)
+++-=.||.+++||.|+ |+|+..-. ...+|.||+||.+||++ .+|+.
T Consensus 36 ~vpNL~ViKamqSLkSR-GyVkEqFaWrhyYw~LTnEGIeYLR~yLhLP~e 85 (162)
T 2xzm_7 36 GVPNLHCYILVRSLKDR-GFLEEIFNWGFTYYYLNKEGCEYLKTKLGISAD 85 (162)
T ss_dssp CCBHHHHHHHHHHHHHH-TSEEEEEETTEEEEEECHHHHHHHHHHHCSSTT
T ss_pred CcCcHHHHHHHhccccc-ccccceeeeEEEEEEEchHHHHHHHHHhCCCcc
Confidence 35556799999999998 99987444 45778999999999965 34444
No 134
>2e1n_A PEX, period extender; circadian clock, DNA binding protein, circadian clock protei; 1.80A {Synechococcus elongatus pcc 7942}
Probab=94.86 E-value=0.04 Score=45.46 Aligned_cols=65 Identities=9% Similarity=0.067 Sum_probs=48.2
Q ss_pred HHHHHHHhccCCCCChHHHHHhc-------CCCHHHHHHHHHHhhccCCcEEEeee-------eEEEEEeChhHHHHhhc
Q psy10346 6 TEKILKYLDTNPPVDTLDLAKLF-------NEDHQKVVGGMKSIETLGEYLIVEPL-------SHKIWELTGEGNQVKDN 71 (292)
Q Consensus 6 e~~iL~~L~~~~~~~~~ela~~~-------~~~~~~v~~~~~~L~s~~glv~~e~~-------~~~~~~LTeEG~~yl~~ 71 (292)
+.-||..|..+ ...-.++.+.+ ++++..|-..++.|+.. |+|+.... .++.|.||+.|++++..
T Consensus 36 ~~~IL~lL~~~-~~~Gyei~k~l~~~~~~~~is~gtLYp~L~rLe~~-GlI~~~~~~~~~~g~~rk~Y~LT~~Gr~~l~~ 113 (138)
T 2e1n_A 36 VCYVLAVLRHE-DSYGTELIQHLETHWPNYRLSDTVLYTALKFLEDE-QIISGYWKKVEGRGRPRRMYQLAQANDDRSRD 113 (138)
T ss_dssp HHHHHHHHTTS-CEEHHHHHHHHHHHSTTEECCHHHHHHHHHHHHHT-TSEEEEEECCTTCSSCEEEEEESCSCCHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHcCCCCCCccHHHHHHHHHHHC-CCEEEEeecccCCCCCcEEEEECHHHHHHHHH
Confidence 34488888653 33334444433 58999999999999986 99988642 46889999999998865
Q ss_pred C
Q psy10346 72 G 72 (292)
Q Consensus 72 G 72 (292)
-
T Consensus 114 ~ 114 (138)
T 2e1n_A 114 L 114 (138)
T ss_dssp H
T ss_pred H
Confidence 3
No 135
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=94.80 E-value=0.048 Score=41.25 Aligned_cols=56 Identities=20% Similarity=0.278 Sum_probs=46.5
Q ss_pred HHHHHHHHHhcc-CCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeC
Q psy10346 4 DLTEKILKYLDT-NPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELT 62 (292)
Q Consensus 4 ~~e~~iL~~L~~-~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LT 62 (292)
+.+.+||.+|.+ +.++.+-++|+.+|+|...|-.+++.|... |.|... ..-+|.++
T Consensus 19 d~eekVLe~LkeaG~PlkageIae~~GvdKKeVdKaik~LKkE-gkI~SP--kRCyw~~~ 75 (80)
T 2lnb_A 19 HLEQRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKE-LKVSLT--SPATWCLG 75 (80)
T ss_dssp HHHHHHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHHHT-TSEEEE--ETTEEEES
T ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHc-CCccCC--CCceeeCC
Confidence 578999999965 556889999999999999999999999975 886654 55566766
No 136
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=94.66 E-value=0.044 Score=41.11 Aligned_cols=44 Identities=7% Similarity=0.182 Sum_probs=40.1
Q ss_pred HHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEE
Q psy10346 7 EKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIV 51 (292)
Q Consensus 7 ~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~ 51 (292)
.+||..|...+.++..++|+.++++...|-+.+..|+.+ |+|.-
T Consensus 5 ~~Il~~L~~~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~-G~l~R 48 (78)
T 1xn7_A 5 IQVRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESM-GKAVR 48 (78)
T ss_dssp HHHHHHHHHSCSBCHHHHHHHTTCCHHHHHHHHHHHHHH-TSEEE
T ss_pred HHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHC-CCEEE
Confidence 568999998999999999999999999999999999987 88753
No 137
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=94.66 E-value=0.048 Score=44.01 Aligned_cols=63 Identities=8% Similarity=0.092 Sum_probs=49.3
Q ss_pred cHHHHHHHHHhcc-CCCCChHHHHHhcC----CCHHHHHHHHHHhhccCCcEEEeeeeE-EEE--EeChhHH
Q psy10346 3 SDLTEKILKYLDT-NPPVDTLDLAKLFN----EDHQKVVGGMKSIETLGEYLIVEPLSH-KIW--ELTGEGN 66 (292)
Q Consensus 3 ~~~e~~iL~~L~~-~~~~~~~ela~~~~----~~~~~v~~~~~~L~s~~glv~~e~~~~-~~~--~LTeEG~ 66 (292)
...|..||..|.. ++.++..++++.++ ++...|.+.+..|+.+ |+|.-+.... ..| .||++|.
T Consensus 8 t~~e~~vL~~L~~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~k-Glv~r~~~~r~~~~~~~lt~~~~ 78 (138)
T 2g9w_A 8 GDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLAKK-NLVLQIRDDRAHRYAPVHGRDEL 78 (138)
T ss_dssp CHHHHHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHT-TSEEEEC---CCEEEESSCHHHH
T ss_pred CHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHHC-CCEEEEecCCeEEEEeCCCHHHH
Confidence 3678999999976 57788899999987 7999999999999987 9998754322 233 4787774
No 138
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=94.55 E-value=0.062 Score=43.58 Aligned_cols=48 Identities=10% Similarity=0.232 Sum_probs=43.6
Q ss_pred cHHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEE
Q psy10346 3 SDLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIV 51 (292)
Q Consensus 3 ~~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~ 51 (292)
.+.+.+||..|..++.....++|+.+|++...|.+.++.|+.. |+|.-
T Consensus 4 d~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~-G~i~~ 51 (144)
T 2cfx_A 4 DQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESF-GIIKQ 51 (144)
T ss_dssp CHHHHHHHHHHHHCSCCCHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEE
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC-CCeEE
Confidence 5678899999988888889999999999999999999999987 99974
No 139
>3u5c_K 40S ribosomal protein S10-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_K
Probab=94.53 E-value=0.018 Score=45.85 Aligned_cols=42 Identities=17% Similarity=0.233 Sum_probs=33.7
Q ss_pred CCCHHHHHHHHHHhhccCCcEEEeee-eEEEEEeChhHHHHhhc
Q psy10346 29 NEDHQKVVGGMKSIETLGEYLIVEPL-SHKIWELTGEGNQVKDN 71 (292)
Q Consensus 29 ~~~~~~v~~~~~~L~s~~glv~~e~~-~~~~~~LTeEG~~yl~~ 71 (292)
+++-=-|+.++.||.|+ |+|+..-. ....|.||+||.+||++
T Consensus 36 ~vpNL~Vik~mqSLkSr-GyVkeqFaWrh~Yw~LTnEGieyLR~ 78 (105)
T 3u5c_K 36 DTKNLYVIKALQSLTSK-GYVKTQFSWQYYYYTLTEEGVEYLRE 78 (105)
T ss_dssp SSCHHHHHHHHHHHHHT-SSEEEECTTTCCEEEECHHHHHHHHH
T ss_pred CccchhHHHHHhccccc-ceeccEecceEEEEEEchhhHHHHHH
Confidence 35556799999999997 99886433 45678999999999974
No 140
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=94.47 E-value=0.031 Score=48.85 Aligned_cols=64 Identities=13% Similarity=0.154 Sum_probs=53.3
Q ss_pred cHHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeee------eEEEEEeChhHHHH
Q psy10346 3 SDLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPL------SHKIWELTGEGNQV 68 (292)
Q Consensus 3 ~~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~------~~~~~~LTeEG~~y 68 (292)
.+....||..|. .+.....++++.+|+++..|...++.|+.. |+|+.... ....|.||++|...
T Consensus 14 ~~~rl~IL~~L~-~~~~s~~eLa~~l~is~stvs~hLk~Le~~-GLV~~~~~~~~~g~~~~~Y~Lt~~~~~~ 83 (202)
T 2p4w_A 14 NETRRRILFLLT-KRPYFVSELSRELGVGQKAVLEHLRILEEA-GLIESRVEKIPRGRPRKYYMIKKGLRLE 83 (202)
T ss_dssp SHHHHHHHHHHH-HSCEEHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEEECCBTTBCCCEEEEECTTEEEE
T ss_pred CHHHHHHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHHHC-CceEEEeeccCCCCceEEEEEChHHHHH
Confidence 466788999995 456778999999999999999999999987 99998653 56788898888653
No 141
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Probab=94.27 E-value=0.043 Score=57.27 Aligned_cols=54 Identities=15% Similarity=0.312 Sum_probs=45.1
Q ss_pred CCChHHHHHHHHHHHhhhCCceecCCCCccccceeccccCCCCCCCCCCCCCCceeecCCCCCC
Q psy10346 219 HLHPLMKVRAEFRQIFLDMGFTEMPTNNFVESSFWNFDALFQPQQHPARDAHDTFFVTDPKTSE 282 (292)
Q Consensus 219 ~~Hpl~~~~~~i~~if~~mGF~e~~~~~~Ves~f~NFD~L~~PqdHPAR~~~DTfyl~~~~~~~ 282 (292)
..||..++.+++|++|.++||.|+-+.+++..++| +.| |++ +|+++|.+|-+.+
T Consensus 487 ~~~~~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~--~~l--~~~------~~~v~L~NPis~d 540 (785)
T 1b7y_B 487 GVEAPYRKEQRLREVLSGLGFQEVYTYSFMDPEDA--RRF--RLD------PPRLLLLNPLAPE 540 (785)
T ss_dssp STTHHHHHHHHHHHHHHHHTCEECCCCSEECTTHH--HHT--TCC------CCSCEESSCSSTT
T ss_pred cCCHHHHHHHHHHHHHHHCCCEEEecCcccCHHHH--Hhc--CCC------CCeEEEcCCCchh
Confidence 78999999999999999999999888999987766 543 552 7789999886554
No 142
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=94.19 E-value=0.088 Score=38.49 Aligned_cols=50 Identities=12% Similarity=0.081 Sum_probs=43.1
Q ss_pred cHHHHHHHHHhccCCCCChHHHHHhcC----CCHHHHHHHHHHhhccCCcEEEee
Q psy10346 3 SDLTEKILKYLDTNPPVDTLDLAKLFN----EDHQKVVGGMKSIETLGEYLIVEP 53 (292)
Q Consensus 3 ~~~e~~iL~~L~~~~~~~~~ela~~~~----~~~~~v~~~~~~L~s~~glv~~e~ 53 (292)
...|..||..|...+.++..+++..++ ++...|.+.+..|+.+ |+|....
T Consensus 8 t~~e~~vL~~L~~~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~k-Glv~r~~ 61 (82)
T 1p6r_A 8 SDAELEVMKVIWKHSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKK-GALNHHK 61 (82)
T ss_dssp CHHHHHHHHHHHTSSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHT-TSEEEEE
T ss_pred CHHHHHHHHHHHcCCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHC-CCeEEEe
Confidence 467899999997777788899998875 7899999999999987 9998765
No 143
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=94.18 E-value=0.13 Score=47.77 Aligned_cols=72 Identities=14% Similarity=0.063 Sum_probs=60.2
Q ss_pred HHHHHHHHHhccC-CCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeee-eEEEEEeChhHHHHhhcCChHH
Q psy10346 4 DLTEKILKYLDTN-PPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPL-SHKIWELTGEGNQVKDNGSHEV 76 (292)
Q Consensus 4 ~~e~~iL~~L~~~-~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~-~~~~~~LTeEG~~yl~~GlPE~ 76 (292)
+++..|...|.+. +.++.+++|..+|++...+-+.+..|.+. |+++.+.. ....|.+|+.+..++..++|..
T Consensus 28 a~eLglfd~L~~~~~p~t~~eLA~~~g~~~~~l~rlLr~L~~~-gll~~~~~~~~~~y~~t~~s~~~l~~~~~~~ 101 (353)
T 4a6d_A 28 ACELGVFDLLAEAPGPLDVAAVAAGVRASAHGTELLLDICVSL-KLLKVETRGGKAFYRNTELSSDYLTTVSPTS 101 (353)
T ss_dssp HHHHTHHHHHHHSSSCBCHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEEEETTEEEEEECHHHHHHHSTTSTTC
T ss_pred HHHcCHHHHHhcCCCCCCHHHHHHhhCcCHHHHHHHHHHHHHC-CCEEEeccCccceeeCCHHHHHHhhcCCchH
Confidence 4566778888653 56888999999999999999999999997 99987544 3568999999999999988854
No 144
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=93.99 E-value=0.0097 Score=55.69 Aligned_cols=62 Identities=15% Similarity=0.126 Sum_probs=0.0
Q ss_pred HHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeChhHHHHh
Q psy10346 4 DLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELTGEGNQVK 69 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LTeEG~~yl 69 (292)
..++.||..|...+.+...++|+.+|++...|.+.+..|+.+ |+|+... .-..||++|++.+
T Consensus 20 ~r~~~iL~~l~~~~~~t~~eLa~~l~vs~~Tv~r~l~~Le~~-Glv~~~~---~gi~LT~~G~~~~ 81 (345)
T 2o0m_A 20 QERFQILRNIYWMQPIGRRSLSETMGITERVLRTETDVLKQL-NLIEPSK---SGMTLTERGLEVY 81 (345)
T ss_dssp ------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC-CCEEEEe---cceEEcHHHHHHH
Confidence 456778999987777888999999999999999999999987 9997433 3589999999766
No 145
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=93.99 E-value=0.084 Score=42.92 Aligned_cols=47 Identities=17% Similarity=0.352 Sum_probs=43.3
Q ss_pred cHHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEE
Q psy10346 3 SDLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLI 50 (292)
Q Consensus 3 ~~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~ 50 (292)
...+.+||..|..++.....++|+.+|++...|.+.++.|+.. |+|.
T Consensus 8 d~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~-G~i~ 54 (151)
T 2dbb_A 8 DRVDMQLVKILSENSRLTYRELADILNTTRQRIARRIDKLKKL-GIIR 54 (151)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHTTSCHHHHHHHHHHHHHH-TSEE
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC-CCEE
Confidence 4678899999988888899999999999999999999999987 9987
No 146
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=93.97 E-value=0.048 Score=41.87 Aligned_cols=46 Identities=7% Similarity=0.120 Sum_probs=40.9
Q ss_pred HHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEee
Q psy10346 7 EKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEP 53 (292)
Q Consensus 7 ~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~ 53 (292)
.+||..|...+.++..+||+.+|++...|-+.+..|+.+ |+|.-.+
T Consensus 5 ~~Il~~L~~~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~-G~l~R~~ 50 (87)
T 2k02_A 5 MEVRDMLALQGRMEAKQLSARLQTPQPLIDAMLERMEAM-GKVVRIS 50 (87)
T ss_dssp HHHHHHHHHSCSEEHHHHHHHTTCCHHHHHHHHHHHHTT-CCSEEEE
T ss_pred HHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHC-CCEEEEe
Confidence 468999998999999999999999999999999999987 8776443
No 147
>2zfw_A PEX; five alpha-helices + one beta-sheet, circadian clock protein; 2.90A {Synechococcus SP}
Probab=93.93 E-value=0.023 Score=47.63 Aligned_cols=65 Identities=9% Similarity=0.072 Sum_probs=48.1
Q ss_pred HHHHHHhccCCCCChHHHHHhc-------CCCHHHHHHHHHHhhccCCcEEEee-------eeEEEEEeChhHHHHhhcC
Q psy10346 7 EKILKYLDTNPPVDTLDLAKLF-------NEDHQKVVGGMKSIETLGEYLIVEP-------LSHKIWELTGEGNQVKDNG 72 (292)
Q Consensus 7 ~~iL~~L~~~~~~~~~ela~~~-------~~~~~~v~~~~~~L~s~~glv~~e~-------~~~~~~~LTeEG~~yl~~G 72 (292)
.-||..|..+ ...-.++.+.+ ++++..|-..++.|+.. |+|+... ..++.|.||+.|++++..-
T Consensus 47 ~~IL~lL~~~-p~~GYeI~k~l~~~~~~~~is~gtLYp~L~rLE~~-GlI~~~~~~~~~~g~~rk~Y~LT~~Gr~~l~~~ 124 (148)
T 2zfw_A 47 CYVLAVLRHE-DSYGTELIQHLETHWPNYRLSDTVLYTALKFLEDE-QIISGYWKKVEGRGRPRRMYQLAQANDDRSRDL 124 (148)
T ss_dssp HHHHHHHTTC-CEEHHHHHHHHHHHCTTEECCSHHHHHHHHHHHHT-SSEEEECCCCTTSSCCCCEEEESSSSCSTTHHH
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHC-CCEEEEeeccCCCCCCcEEEEECHHHHHHHHHH
Confidence 3478888653 33335555443 58899999999999986 9999863 3468899999999887554
Q ss_pred C
Q psy10346 73 S 73 (292)
Q Consensus 73 l 73 (292)
.
T Consensus 125 ~ 125 (148)
T 2zfw_A 125 A 125 (148)
T ss_dssp H
T ss_pred H
Confidence 3
No 148
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=93.88 E-value=0.032 Score=50.27 Aligned_cols=73 Identities=10% Similarity=0.007 Sum_probs=59.2
Q ss_pred HHHHHHHHHhccC--CCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEee----eeEEEEEeChhHHHHhhcCChHHH
Q psy10346 4 DLTEKILKYLDTN--PPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEP----LSHKIWELTGEGNQVKDNGSHEVL 77 (292)
Q Consensus 4 ~~e~~iL~~L~~~--~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~----~~~~~~~LTeEG~~yl~~GlPE~r 77 (292)
..|..||..|... +.++..++|..++++...+.+.++.|+.+ |+|.-.+ +-...+.||++|++.+..=.|+..
T Consensus 34 ~~q~~vL~~L~~~~~~~~~~~el~~~l~~~~~t~t~~l~rLe~~-G~i~R~~~~~DrR~~~i~LT~~G~~~~~~~~~~~~ 112 (250)
T 1p4x_A 34 IKEFILLTYLFHQQENTLPFKKIVSDLCYKQSDLVQHIKVLVKH-SYISKVRSKIDERNTYISISEEQREKIAERVTLFD 112 (250)
T ss_dssp HHHHHHHHHHHSCSCSEEEHHHHHHHSSSCGGGTHHHHHHHHHT-TSCEEEECSSSTTSEEEECCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCcCHHHHHHHHCCCHhhHHHHHHHHHHC-CCEEecCCCCCCCeEEEEECHHHHHHHHHHHHHHH
Confidence 5688899999653 45788999999999999999999999987 9997643 334578999999997766666554
No 149
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=93.81 E-value=0.1 Score=41.59 Aligned_cols=49 Identities=22% Similarity=0.248 Sum_probs=42.6
Q ss_pred HHHHHHHHHhccCCC--CChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEee
Q psy10346 4 DLTEKILKYLDTNPP--VDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEP 53 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~--~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~ 53 (292)
..+..||..|...+. ++..++|+.+|++...|.+.+..|+.+ |+|.-..
T Consensus 26 ~~e~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~-GlV~r~~ 76 (123)
T 3r0a_A 26 KADLNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEK-EILQRSQ 76 (123)
T ss_dssp HHHHHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHT-TSEEEEE
T ss_pred HHHHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC-CCEEeeC
Confidence 567889999976554 788999999999999999999999987 9998754
No 150
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=93.79 E-value=0.097 Score=42.55 Aligned_cols=48 Identities=13% Similarity=0.127 Sum_probs=43.4
Q ss_pred cHHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEE
Q psy10346 3 SDLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIV 51 (292)
Q Consensus 3 ~~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~ 51 (292)
.+.+.+||..|..++.....++|+.+|++...|.+.++.|+.. |+|.-
T Consensus 6 d~~~~~iL~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~-G~i~~ 53 (150)
T 2w25_A 6 DDIDRILVRELAADGRATLSELATRAGLSVSAVQSRVRRLESR-GVVQG 53 (150)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHT-TSEEE
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC-CCEEE
Confidence 4678899999988888889999999999999999999999987 99963
No 151
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=93.67 E-value=0.1 Score=42.48 Aligned_cols=48 Identities=19% Similarity=0.208 Sum_probs=43.7
Q ss_pred cHHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEE
Q psy10346 3 SDLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIV 51 (292)
Q Consensus 3 ~~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~ 51 (292)
.+.+.+||..|..++.....++|+.+|++...|.+.++.|+.. |+|.-
T Consensus 7 d~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~-G~i~~ 54 (152)
T 2cg4_A 7 DNLDRGILEALMGNARTAYAELAKQFGVSPETIHVRVEKMKQA-GIITG 54 (152)
T ss_dssp CHHHHHHHHHHHHCTTSCHHHHHHHHTSCHHHHHHHHHHHHHH-TSEEE
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHc-CCcce
Confidence 4678899999988888899999999999999999999999987 99874
No 152
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=93.66 E-value=0.11 Score=38.85 Aligned_cols=57 Identities=14% Similarity=0.223 Sum_probs=44.3
Q ss_pred HHHHHHH---HhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeC
Q psy10346 5 LTEKILK---YLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELT 62 (292)
Q Consensus 5 ~e~~iL~---~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LT 62 (292)
+...|+. .|..++.....++|.++|++.+.|-+.+.+|+.+ |+|......--.|.++
T Consensus 13 ~~~~v~~~i~~L~~~~~~Ta~~IAkkLg~sK~~vNr~LY~L~kk-G~V~~~~~~PP~W~~~ 72 (75)
T 1sfu_A 13 IFSLVKKEVLSLNTNDYTTAISLSNRLKINKKKINQQLYKLQKE-DTVKMVPSNPPKWFKN 72 (75)
T ss_dssp HHHHHHHHHHTSCTTCEECHHHHHHHTTCCHHHHHHHHHHHHHT-TSEEEECCSSCEEEEC
T ss_pred HHHHHHHHHHhCCCCcchHHHHHHHHHCCCHHHHHHHHHHHHHC-CCEecCCCCCCCccCC
Confidence 3444544 4444444678999999999999999999999986 9999888777777665
No 153
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=93.45 E-value=0.13 Score=39.30 Aligned_cols=66 Identities=9% Similarity=0.065 Sum_probs=51.4
Q ss_pred CcHHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEee-eeEEEEEeChhHHHHh
Q psy10346 2 ASDLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEP-LSHKIWELTGEGNQVK 69 (292)
Q Consensus 2 ~~~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~-~~~~~~~LTeEG~~yl 69 (292)
+++...+||..|...++....++|+.+|+++..|.+-++.|+. . +|..++ -....|.||++|..-+
T Consensus 25 ~~~~Rl~IL~~l~~~~~~~~~ela~~l~is~stvs~hL~~L~~-~-lv~~~~~gr~~~y~l~~~~~~~~ 91 (99)
T 2zkz_A 25 AHPMRLKIVNELYKHKALNVTQIIQILKLPQSTVSQHLCKMRG-K-VLKRNRQGLEIYYSINNPKVEGI 91 (99)
T ss_dssp CSHHHHHHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHHHHHBT-T-TBEEEEETTEEEEECCCHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHHH-H-hhhheEeCcEEEEEEChHHHHHH
Confidence 4567788896665456678899999999999999999999986 4 877643 3456899999986543
No 154
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=93.42 E-value=0.11 Score=52.42 Aligned_cols=107 Identities=11% Similarity=0.138 Sum_probs=52.6
Q ss_pred HHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhc-----cCCcEEEeeeeEEEEEeChhHHHHhhcC-------
Q psy10346 5 LTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIET-----LGEYLIVEPLSHKIWELTGEGNQVKDNG------- 72 (292)
Q Consensus 5 ~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s-----~~glv~~e~~~~~~~~LTeEG~~yl~~G------- 72 (292)
.+..||..|..++.++..++++.+|++...+.+.++.|.. . |+|+-.. ..|.|++.-...+.+.
T Consensus 431 ~~~~iL~~l~~~~~it~~~la~~l~~s~~~~~~~L~~L~~~~~~~~-glie~~g---~~y~L~~~~~~~~~~~~~~~~~~ 506 (583)
T 3lmm_A 431 RIAIVLYLLFQRPFITIDVVARGLQSGKEAARNALEAARQTTVAGA-PLIIAHD---GVWLLGNACREILRKVEPSPFSP 506 (583)
T ss_dssp HHHHHHHHHHHSSSBCHHHHHHHHTSCHHHHHHHHHHHHTCEETTE-ESEEEET---TEEEECHHHHHHHTSCC------
T ss_pred hHHHHHHHHHHCCCcCHHHHHHHhCcCHHHHHHHHHHHHhhhcccc-ceEEEeC---CEEEECHHHHHHhcccccccccc
Confidence 4568999998888999999999999999999999999987 4 7887754 5799999865545332
Q ss_pred ------Ch---HHHHHhhcCCCC-CChHHHhhcC----CchhhHHHHHHHcCCeecc
Q psy10346 73 ------SH---EVLVFNNVPSEG-IGQKELLATF----PNAKVGFSKAMAKGWISLD 115 (292)
Q Consensus 73 ------lP---E~rl~~~l~~~~-~~~~el~~~~----~~~~ig~~~a~k~gwi~i~ 115 (292)
.| +..++++|.+.| ++..++.+.+ ..+.-.+..+.+.|.|+..
T Consensus 507 ~~~~~~~~~~~~~~I~~~l~~~g~it~~di~~l~~ls~~qa~~~L~~Lv~~G~l~~~ 563 (583)
T 3lmm_A 507 VRYLSTDQAELTNAAMLWLSEVGDLATSDLMAMCGVSRGTAKACVDGLVDEERVVAV 563 (583)
T ss_dssp ---------------------------------------------------------
T ss_pred cccccCChhHHHHHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEe
Confidence 01 234667777654 6667776642 2334445555556655443
No 155
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=93.37 E-value=0.093 Score=42.53 Aligned_cols=47 Identities=17% Similarity=0.160 Sum_probs=42.6
Q ss_pred HHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEE
Q psy10346 4 DLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIV 51 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~ 51 (292)
+.+.+||..|..++.....++|+.+|++...|.+.++.|+.. |+|.-
T Consensus 3 ~~~~~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~-G~i~~ 49 (150)
T 2pn6_A 3 EIDLRILKILQYNAKYSLDEIAREIRIPKATLSYRIKKLEKD-GVIKG 49 (150)
T ss_dssp HHHHHHHHHHTTCTTSCHHHHHHHHTSCHHHHHHHHHHHHHT-TSSCC
T ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC-CcEEE
Confidence 567899999988888889999999999999999999999987 99863
No 156
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=93.33 E-value=0.13 Score=42.50 Aligned_cols=48 Identities=17% Similarity=0.205 Sum_probs=43.5
Q ss_pred cHHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEE
Q psy10346 3 SDLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIV 51 (292)
Q Consensus 3 ~~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~ 51 (292)
...+.+||..|..++.....++|+.+|++...|.+.++.|+.. |+|.-
T Consensus 9 d~~~~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~-G~i~~ 56 (162)
T 2p5v_A 9 DKTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDA-GIVRQ 56 (162)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHT-TSEEE
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC-CCEee
Confidence 4678899999988888889999999999999999999999987 99873
No 157
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=93.18 E-value=0.26 Score=35.87 Aligned_cols=57 Identities=19% Similarity=0.178 Sum_probs=45.5
Q ss_pred HHHHHHHHHhccC--CCCChHHHHHhc-----CCCHHHHHHHHHHhhccCCcEEEeee--eEEEEEe
Q psy10346 4 DLTEKILKYLDTN--PPVDTLDLAKLF-----NEDHQKVVGGMKSIETLGEYLIVEPL--SHKIWEL 61 (292)
Q Consensus 4 ~~e~~iL~~L~~~--~~~~~~ela~~~-----~~~~~~v~~~~~~L~s~~glv~~e~~--~~~~~~L 61 (292)
.....||..|... +..+..++++.+ +++...|-+.+..|+.. |+|.-... ....|.+
T Consensus 17 ~~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~-Glv~~~~~~~~~~~y~~ 82 (83)
T 2fu4_A 17 LPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDA-GIVTRHNFEGGKSVFEL 82 (83)
T ss_dssp HHHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH-TSEEEEECGGGCEEEEE
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHC-CCeEEEeeCCCceEeec
Confidence 5667899999754 578889999998 99999999999999987 99986443 3445554
No 158
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=93.12 E-value=0.1 Score=43.26 Aligned_cols=46 Identities=22% Similarity=0.252 Sum_probs=42.5
Q ss_pred HHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEE
Q psy10346 4 DLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLI 50 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~ 50 (292)
....+||..|..++.+...++|+.+|++...|.+-++.|+.. |+|.
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~lg~s~~tv~~rl~~L~~~-g~i~ 48 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKVGLSTTPCWRRIQKMEED-GVIR 48 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHHTCCHHHHHHHHHHHHHT-TSSC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC-CCee
Confidence 567899999998889999999999999999999999999987 9876
No 159
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=93.11 E-value=0.14 Score=43.15 Aligned_cols=47 Identities=15% Similarity=0.277 Sum_probs=43.1
Q ss_pred cHHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEE
Q psy10346 3 SDLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLI 50 (292)
Q Consensus 3 ~~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~ 50 (292)
.+.+.+||..|..++.....++|+.+|++...|.+.++.|++. |+|.
T Consensus 16 d~~d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~~l~~L~~~-G~I~ 62 (171)
T 2ia0_A 16 DDLDRNILRLLKKDARLTISELSEQLKKPESTIHFRIKKLQER-GVIE 62 (171)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHT-TSEE
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC-CCEE
Confidence 4678899999988888899999999999999999999999987 9986
No 160
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=92.94 E-value=0.18 Score=42.76 Aligned_cols=62 Identities=13% Similarity=0.014 Sum_probs=50.8
Q ss_pred HHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEE-eeeeEEEEEeChhHHHHhh
Q psy10346 5 LTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIV-EPLSHKIWELTGEGNQVKD 70 (292)
Q Consensus 5 ~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~-e~~~~~~~~LTeEG~~yl~ 70 (292)
.-.+||+.|. .|+..+..+|+.+|++|+++--.++.|+-. |+|.. ..-....|+|.+. +|+.
T Consensus 12 rk~~ILE~Lk-~G~~~t~~Iak~LGlShg~aq~~Ly~LeRE-G~V~~Vk~GK~ayw~L~~s--~y~~ 74 (165)
T 2vxz_A 12 RLRDILALLA-DGCKTTSLIQQRLGLSHGRAKALIYVLEKE-GRVTRVAFGNVALVCLSMD--QYRQ 74 (165)
T ss_dssp HHHHHHHHHT-TCCEEHHHHHHHHTCCHHHHHHHHHHHHHT-TSCEEEEETTEEEEESCHH--HHHH
T ss_pred HHHHHHHHHH-hCCccHHHHHHHhCCcHHHHHHHHHHHHhc-CceEEEEEccEEEEEecHH--HHHH
Confidence 4567999999 888899999999999999999999999965 88776 5555666788755 6664
No 161
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=92.92 E-value=0.098 Score=41.77 Aligned_cols=47 Identities=17% Similarity=0.215 Sum_probs=42.3
Q ss_pred cHHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEE
Q psy10346 3 SDLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLI 50 (292)
Q Consensus 3 ~~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~ 50 (292)
...+.+||..|..++.....++|+.+|++...|.+.++.|+.. |+|.
T Consensus 3 d~~~~~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~-G~i~ 49 (141)
T 1i1g_A 3 DERDKIILEILEKDARTPFTEIAKKLGISETAVRKRVKALEEK-GIIE 49 (141)
T ss_dssp CSHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHH-TSSC
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC-CCEe
Confidence 4578899999987778888999999999999999999999987 9985
No 162
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=92.48 E-value=0.12 Score=42.11 Aligned_cols=48 Identities=10% Similarity=0.225 Sum_probs=43.3
Q ss_pred cHHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEE
Q psy10346 3 SDLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIV 51 (292)
Q Consensus 3 ~~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~ 51 (292)
...+.+||..|..++.....++|+.+|++...|.+.++.|++. |+|.-
T Consensus 6 d~~~~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~-G~i~~ 53 (151)
T 2cyy_A 6 DEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRES-GVIKK 53 (151)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHHCSCHHHHHHHHHHHHHH-TSSCC
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC-CCeEE
Confidence 4678899999988888889999999999999999999999987 99863
No 163
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=92.46 E-value=0.2 Score=41.00 Aligned_cols=48 Identities=8% Similarity=0.029 Sum_probs=39.3
Q ss_pred CCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeee------EEEEEeChhH
Q psy10346 17 PPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLS------HKIWELTGEG 65 (292)
Q Consensus 17 ~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~------~~~~~LTeEG 65 (292)
...+++++|+.+|++...|.+.+..|..+ |+|.++... ...|-||+-=
T Consensus 50 ~~ps~~~LA~~~~~s~~~v~~~L~~L~~K-GlI~i~~~~d~~g~~~~~ydL~pL~ 103 (135)
T 2v79_A 50 YFPTPNQLQEGMSISVEECTNRLRMFIQK-GFLFIEECEDQNGIKFEKYSLQPLW 103 (135)
T ss_dssp CSCCHHHHHTTSSSCHHHHHHHHHHHHHH-TSCEEEEEECTTCCEEEEEECHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHC-CCEEEEeEecCCCceEEEeeHHHHH
Confidence 33688999999999999999999999987 999996443 2577777543
No 164
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=92.35 E-value=0.095 Score=48.20 Aligned_cols=42 Identities=17% Similarity=0.179 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhhhCCceecCCCCccccceeccccCCCCCCCC-----CCCCCCc
Q psy10346 223 LMKVRAEFRQIFLDMGFTEMPTNNFVESSFWNFDALFQPQQHP-----ARDAHDT 272 (292)
Q Consensus 223 l~~~~~~i~~if~~mGF~e~~~~~~Ves~f~NFD~L~~PqdHP-----AR~~~DT 272 (292)
-+.+++.||++|.++||.|+. .|.+++++ | |.+|| ||..++.
T Consensus 18 rs~i~~~ir~~f~~~GF~EVe-TP~l~~~~---~----~~~~~~~~e~a~~f~~~ 64 (294)
T 1nnh_A 18 QTKILEYMTDFFVKEGFKWLL-PVIISPIT---D----PLWPDPAGEGMEPAEVE 64 (294)
T ss_dssp HHHHHHHHHHHHHHTTCEEEC-CCCEESCC---C----CCCSCTTCCCCCCCEEE
T ss_pred HHHHHHHHHHHHHHCCCEEEE-CCEEEEcc---c----hhccCCCCCcceeEEEE
Confidence 567889999999999999996 69998882 3 88999 7766543
No 165
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=92.18 E-value=0.13 Score=39.54 Aligned_cols=47 Identities=13% Similarity=0.149 Sum_probs=39.7
Q ss_pred HHHHHHHHhc-cCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEe
Q psy10346 5 LTEKILKYLD-TNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVE 52 (292)
Q Consensus 5 ~e~~iL~~L~-~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e 52 (292)
...+||..|. .+...+..++|+.+|++...|.+++..|++. |+|...
T Consensus 19 ~~l~Il~~l~~~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~~-GlV~~~ 66 (110)
T 1q1h_A 19 DVIDVLRILLDKGTEMTDEEIANQLNIKVNDVRKKLNLLEEQ-GFVSYR 66 (110)
T ss_dssp TTHHHHHHHHHHCSCBCHHHHHHTTTSCHHHHHHHHHHHHHH-TSCEEE
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC-CCEEEE
Confidence 4457887774 4446788999999999999999999999987 999876
No 166
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=91.95 E-value=0.16 Score=42.85 Aligned_cols=48 Identities=10% Similarity=0.225 Sum_probs=43.3
Q ss_pred cHHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEE
Q psy10346 3 SDLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIV 51 (292)
Q Consensus 3 ~~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~ 51 (292)
...+.+||..|..++.....++|+.+|++...|.+.++.|++. |+|.-
T Consensus 26 d~~d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~rl~~L~~~-G~I~~ 73 (171)
T 2e1c_A 26 DEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRES-GVIKK 73 (171)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHT-TSSCC
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC-CCeEe
Confidence 4678899999988888889999999999999999999999987 99863
No 167
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=91.94 E-value=0.084 Score=51.32 Aligned_cols=49 Identities=8% Similarity=0.070 Sum_probs=41.2
Q ss_pred CCCChHHHHHHHHHHHhhhCCceecCCCCccccceeccccCCCCCCCCCCCCCCceeecC
Q psy10346 218 GHLHPLMKVRAEFRQIFLDMGFTEMPTNNFVESSFWNFDALFQPQQHPARDAHDTFFVTD 277 (292)
Q Consensus 218 g~~Hpl~~~~~~i~~if~~mGF~e~~~~~~Ves~f~NFD~L~~PqdHPAR~~~DTfyl~~ 277 (292)
...|+-+.+++.||++|.++||.|+. .|.++++ ..||||++.+|.|.+.
T Consensus 133 ~~~~~rs~i~~~ir~~f~~~gF~eVe-TP~l~~~----------~~e~~~~~f~~~~~~~ 181 (434)
T 1x54_A 133 AIMKVKETLIMAAREWLLKDGWHEVF-PPILVTG----------AVEGGATLFKLKYFDK 181 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECC-CCSEESC----------CSSCGGGCCEEEETTE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEe-CcEEEee----------cCCCCceeEEEeecCC
Confidence 34566788999999999999999986 6888866 6899999999987653
No 168
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=91.83 E-value=0.32 Score=44.69 Aligned_cols=66 Identities=12% Similarity=0.153 Sum_probs=56.1
Q ss_pred HHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeChhHHHHhhcCCh
Q psy10346 4 DLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELTGEGNQVKDNGSH 74 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LTeEG~~yl~~GlP 74 (292)
..+..|+..|.+ +..+..+||+.+|+++..+-++++.|.+. |+++... ..|.+|+.+..++..++|
T Consensus 51 a~~lgif~~L~~-~~~t~~eLA~~~g~~~~~l~rlLr~L~~~-gll~~~~---~~y~~t~~~~~~l~~~~~ 116 (359)
T 1x19_A 51 AIELDLFSHMAE-GPKDLATLAADTGSVPPRLEMLLETLRQM-RVINLED---GKWSLTEFADYMFSPTPK 116 (359)
T ss_dssp HHHHTHHHHHTT-CCBCHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEET---TEEEECHHHHHHSSSSCS
T ss_pred HHHcCcHHHHcC-CCCCHHHHHHHhCcChHHHHHHHHHHHhC-CCeEeeC---CeEecCHHHHHHhcCCCC
Confidence 456677888864 66788999999999999999999999997 9998653 389999998889988877
No 169
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=91.61 E-value=0.29 Score=44.65 Aligned_cols=66 Identities=15% Similarity=0.143 Sum_probs=55.4
Q ss_pred HHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeChhHHHHhhcCChHH
Q psy10346 5 LTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELTGEGNQVKDNGSHEV 76 (292)
Q Consensus 5 ~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LTeEG~~yl~~GlPE~ 76 (292)
.+..|...|.. ..+.+++|+.+|++...+-+++..|.+. |+++... ..|.+|+.+..++..+.|.+
T Consensus 45 ~~lgif~~l~~--~~t~~elA~~~~~~~~~l~rlLr~L~~~-gll~~~~---~~y~~t~~s~~~l~~~~~~~ 110 (352)
T 3mcz_A 45 VADKLFDLTQT--GRTPAEVAASFGMVEGKAAILLHALAAL-GLLTKEG---DAFRNTALTERYLTTTSADY 110 (352)
T ss_dssp HHTTHHHHTTS--CBCHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEET---TEEEECHHHHHHHSTTCTTC
T ss_pred HHCChHHHhCC--CCCHHHHHHHhCcChHHHHHHHHHHHHC-CCeEecC---CeeecCHHHHhhccCCChhh
Confidence 45556777753 6788999999999999999999999997 9998643 46999999999998888864
No 170
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=91.38 E-value=0.25 Score=44.53 Aligned_cols=67 Identities=9% Similarity=0.076 Sum_probs=55.7
Q ss_pred HHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeChhHHHHhhcCChH
Q psy10346 4 DLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELTGEGNQVKDNGSHE 75 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LTeEG~~yl~~GlPE 75 (292)
..+..|+..|.+ +..+.+++|+.+|+++..+-+++..|.+. |+++. ....|.+|..+..++..+.|.
T Consensus 26 ~~~l~i~~~l~~-~~~t~~ela~~~~~~~~~l~r~L~~L~~~-g~l~~---~~~~y~~t~~~~~~l~~~~~~ 92 (335)
T 2r3s_A 26 AVELNVFTAISQ-GIESSQSLAQKCQTSERGMRMLCDYLVII-GFMTK---QAEGYRLTSDSAMFLDRQSKF 92 (335)
T ss_dssp HHHTTHHHHHTT-SEECHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEE---ETTEEEECHHHHHHTCTTSTT
T ss_pred HHHcChHHHHhc-CCCCHHHHHHHhCCCchHHHHHHHHHHhc-CCeEe---cCCEEecCHHHHHHhccCCcH
Confidence 355667888874 56788999999999999999999999997 99974 346899999998888877663
No 171
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=90.49 E-value=0.69 Score=39.26 Aligned_cols=65 Identities=15% Similarity=0.192 Sum_probs=53.5
Q ss_pred CCcHHHHHHHHHhccCCCCChHHHHHhcC-CCHHHHHHHHHHhhccCCcEEEeeee------EEEEEeChhHHH
Q psy10346 1 MASDLTEKILKYLDTNPPVDTLDLAKLFN-EDHQKVVGGMKSIETLGEYLIVEPLS------HKIWELTGEGNQ 67 (292)
Q Consensus 1 m~~~~e~~iL~~L~~~~~~~~~ela~~~~-~~~~~v~~~~~~L~s~~glv~~e~~~------~~~~~LTeEG~~ 67 (292)
++++.-.+||..|.. ++....+++..+| ++...|..-++.|+.. |+|++.+.. ...|.++.++-.
T Consensus 20 La~P~Rl~il~~L~~-~~~~~~~l~~~l~~~~~~~~s~Hl~~L~~a-glv~~~~e~~~~g~~er~y~~~~~~~~ 91 (182)
T 4g6q_A 20 LHHPLRWRITQLLIG-RSLTTRELAELLPDVATTTLYRQVGILVKA-GVLMVTAEHQVRGAVERTYTLNTQAGD 91 (182)
T ss_dssp TTSHHHHHHHHHTTT-SCEEHHHHHHHCTTBCHHHHHHHHHHHHHH-TSEEEEEEEEETTEEEEEEEECTTTTT
T ss_pred hCCHHHHHHHHHHHh-CCCCHHHHHHHhcCCCHHHHHHHHHHHHHC-CCeEEEEeecccCcceeEEEecccccc
Confidence 467888999999964 5667789999986 8999999999999987 999986654 578999988743
No 172
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=89.94 E-value=0.34 Score=38.35 Aligned_cols=60 Identities=12% Similarity=0.000 Sum_probs=44.6
Q ss_pred HHHHHHHHhcc---CCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeChhH
Q psy10346 5 LTEKILKYLDT---NPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELTGEG 65 (292)
Q Consensus 5 ~e~~iL~~L~~---~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LTeEG 65 (292)
...+||..|.. ++.+.+.++|+.+|++...|.+.+..|+.. |+|...+-..--|.|+...
T Consensus 10 ~al~iL~~la~~~~~~~~s~~ela~~~~i~~~~v~~il~~L~~~-Glv~~~~g~~ggy~L~~~~ 72 (129)
T 2y75_A 10 YGLTIMIELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRNA-GLVKSIRGAYGGYVLGSEP 72 (129)
T ss_dssp HHHHHHHHHHHTTTSCCBCHHHHHHHTTSCHHHHHHHHHHHHHT-TSEEEC----CCEEESSCG
T ss_pred HHHHHHHHHHhCCCCCcCCHHHHHHHHCcCHHHHHHHHHHHHHC-CceEecCCCCCceEeCCCH
Confidence 34567777754 345788999999999999999999999986 9998765544567776544
No 173
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=89.69 E-value=0.44 Score=38.18 Aligned_cols=51 Identities=8% Similarity=0.054 Sum_probs=38.7
Q ss_pred HHHHHHHHHhcc----C-CCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeee
Q psy10346 4 DLTEKILKYLDT----N-PPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLS 55 (292)
Q Consensus 4 ~~e~~iL~~L~~----~-~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~ 55 (292)
+.|..||..|.. + ...+..++|..+|++..+|.+++..|+.+ |+|+.+...
T Consensus 32 ~~e~~vll~L~~~~~~~~~~ps~~~LA~~l~~s~~~V~~~l~~Le~k-GlI~~~~~~ 87 (128)
T 2vn2_A 32 EGELVLLLHMQSFFEEGVLFPTPAELAERMTVSAAECMEMVRRLLQK-GMIAIEEHT 87 (128)
T ss_dssp HHHHHHHHHHHHHHTTTCSSCCHHHHHHTSSSCHHHHHHHHHHHHHT-TSSEECC--
T ss_pred HHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC-CCEEEEeEE
Confidence 345556666632 2 22678999999999999999999999987 999986553
No 174
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=89.53 E-value=0.18 Score=37.33 Aligned_cols=49 Identities=20% Similarity=0.292 Sum_probs=42.5
Q ss_pred HHHHHHHHhccCCCCChHHHHHhcCCCHHH-HHHHHHHhhccCCcEEEeee
Q psy10346 5 LTEKILKYLDTNPPVDTLDLAKLFNEDHQK-VVGGMKSIETLGEYLIVEPL 54 (292)
Q Consensus 5 ~e~~iL~~L~~~~~~~~~ela~~~~~~~~~-v~~~~~~L~s~~glv~~e~~ 54 (292)
.+.+|+..|..+|+.....+|+.+|+.... |-+.+.+|+.+ +++...+.
T Consensus 11 ~ee~I~~fL~~~Gp~~AL~IAK~LGlktAK~VNp~LY~m~~~-~lL~~Dek 60 (72)
T 3eyi_A 11 REEDIYRFLKDNGPQRALVIAQALGMRTAKDVNRDLYRMKSR-HLLDMDEQ 60 (72)
T ss_dssp HHHHHHHHHHHHCSEEHHHHHHHTTCCSGGGTHHHHHHHHHT-TSEEECTT
T ss_pred hHHHHHHHHHHcCCchHHHHHHHhCcchhhhcCHHHHHHHHc-cCcCCCCC
Confidence 478899999998888889999999998655 99999999987 99987543
No 175
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=89.30 E-value=0.47 Score=40.83 Aligned_cols=48 Identities=21% Similarity=0.331 Sum_probs=42.9
Q ss_pred cHHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEe
Q psy10346 3 SDLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVE 52 (292)
Q Consensus 3 ~~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e 52 (292)
...+.+||..|. ++.....++|+.+|++...|.+.++.|+.. |+|...
T Consensus 19 d~~~~~IL~~L~-~~~~s~~eLA~~lglS~stv~~~l~~Le~~-GlI~~~ 66 (192)
T 1uly_A 19 EDTRRKILKLLR-NKEMTISQLSEILGKTPQTIYHHIEKLKEA-GLVEVK 66 (192)
T ss_dssp SHHHHHHHHHHT-TCCBCHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEE
T ss_pred CHHHHHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC-CCEEEE
Confidence 466788999998 567888999999999999999999999987 999876
No 176
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=89.07 E-value=0.44 Score=44.15 Aligned_cols=67 Identities=12% Similarity=0.044 Sum_probs=53.7
Q ss_pred HHHHHHHHhcc-CCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeChhHHHHhhcCChHH
Q psy10346 5 LTEKILKYLDT-NPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELTGEGNQVKDNGSHEV 76 (292)
Q Consensus 5 ~e~~iL~~L~~-~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LTeEG~~yl~~GlPE~ 76 (292)
.+..|...|.. ++..+.++||..+|++...+-+.+..|.+. |+++.+ ...|.+|+.++ ++..+.|-.
T Consensus 36 ~~lgifd~L~~~~~~~t~~eLA~~~g~~~~~l~rlLr~l~~~-g~l~~~---~~~y~~t~~s~-~L~~~~~~~ 103 (363)
T 3dp7_A 36 LKFGIFQLLSGKREGYTLQEISGRTGLTRYAAQVLLEASLTI-GTILLE---EDRYVLAKAGW-FLLNDKMAR 103 (363)
T ss_dssp HHTTHHHHHHTCTTCBCHHHHHHHHTCCHHHHHHHHHHHHHH-TSEEEE---TTEEEECHHHH-HHHHCHHHH
T ss_pred HHhCHHHHHHhcCCCCCHHHHHHHhCcCHHHHHHHHHHHhhC-CCeEec---CCEEecccchH-HhhCCCccc
Confidence 45567778865 467889999999999999999999999998 999653 56899999995 565555543
No 177
>1bm9_A RTP, TER, replication terminator protein; DNA-binding protein, contrahelicase; 2.00A {Bacillus subtilis} SCOP: a.4.5.7 PDB: 1f4k_A 1j0r_A 2dpd_A 2dpu_A 2efw_A* 2dqr_A
Probab=88.94 E-value=0.53 Score=38.30 Aligned_cols=66 Identities=11% Similarity=0.108 Sum_probs=46.7
Q ss_pred HHHHHHHHhccCCC--CCh-HHHHH-----hcCCCHHHHHHHHHHhhccCCcEEEeeee---E-----EEEEeChhHHH-
Q psy10346 5 LTEKILKYLDTNPP--VDT-LDLAK-----LFNEDHQKVVGGMKSIETLGEYLIVEPLS---H-----KIWELTGEGNQ- 67 (292)
Q Consensus 5 ~e~~iL~~L~~~~~--~~~-~ela~-----~~~~~~~~v~~~~~~L~s~~glv~~e~~~---~-----~~~~LTeEG~~- 67 (292)
+..-||..|..... ... .++.+ -..+++.+|-.++..|+.. |+|+.+... . +.|.||+.|+.
T Consensus 19 l~l~IL~ll~~~p~YGYeI~~~L~e~~~~~~~~is~gtlYp~L~rLe~~-Gll~~~~~~~~g~~r~~rkyY~lT~~G~~~ 97 (122)
T 1bm9_A 19 LKLYMITMTEQERLYGLKLLEVLRSEFKEIGFKPNHTEVYRSLHELLDD-GILKQIKVKKEGAKLQEVVLYQFKDYEAAK 97 (122)
T ss_dssp HHHHHHHHHHTTCCBSTTHHHHHHHHHTTTTCCCCHHHHHHHHHHHHHT-TSEEEEEEECTTSTTCEEEEEEESCHHHHH
T ss_pred HHHHHHHHHccCCchHHHHHHHHHHhhccCcccCCcccHHHHHHHHHHC-CCeEEEEeecCCCCCCceeEEEEChhhhhH
Confidence 34557888865433 222 34432 2356799999999999987 999987762 2 88999999999
Q ss_pred -Hhhc
Q psy10346 68 -VKDN 71 (292)
Q Consensus 68 -yl~~ 71 (292)
|+++
T Consensus 98 ~~~~~ 102 (122)
T 1bm9_A 98 LYKKQ 102 (122)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 7743
No 178
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.89 E-value=0.48 Score=36.88 Aligned_cols=50 Identities=10% Similarity=0.098 Sum_probs=42.2
Q ss_pred cHHHHHHHHHhcc--CCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEee
Q psy10346 3 SDLTEKILKYLDT--NPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEP 53 (292)
Q Consensus 3 ~~~e~~iL~~L~~--~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~ 53 (292)
.+.|..|+..++. +..+-+.+|....|+++..|.+.++.|+++ |||+-..
T Consensus 36 t~~E~lVy~~I~~aGn~GIw~kdL~~~tnL~~~~vtkiLK~LE~k-~lIK~Vk 87 (95)
T 2yu3_A 36 DNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESK-KLIKAVK 87 (95)
T ss_dssp SHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHH-TSEEEEC
T ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhC-CCEEEec
Confidence 3678889999976 334778999999999999999999999997 9988543
No 179
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=88.79 E-value=0.52 Score=41.59 Aligned_cols=58 Identities=19% Similarity=0.216 Sum_probs=48.0
Q ss_pred HHHHHHHhccCC-CCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeChhHH
Q psy10346 6 TEKILKYLDTNP-PVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELTGEGN 66 (292)
Q Consensus 6 e~~iL~~L~~~~-~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LTeEG~ 66 (292)
..+||..|...+ .....++|+.+|++.+.|.+.++.|+.. |+|... ....|.|+...-
T Consensus 10 ~l~iL~~l~~~~~~~~~~ela~~~gl~~stv~r~l~~L~~~-G~v~~~--~~~~Y~lg~~~~ 68 (249)
T 1mkm_A 10 AFEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEK-GFVLRK--KDKRYVPGYKLI 68 (249)
T ss_dssp HHHHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHHT-TSEEEC--TTSCEEECTHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC-CcEEEC--CCCcEEECHHHH
Confidence 456888886554 5788999999999999999999999987 999876 456799987643
No 180
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=88.19 E-value=0.27 Score=38.18 Aligned_cols=49 Identities=8% Similarity=-0.037 Sum_probs=40.5
Q ss_pred HHHHHHHHHhccCCCCChHHHHHhcC----CCHHHHHHHHHHhhccCCcEEEee
Q psy10346 4 DLTEKILKYLDTNPPVDTLDLAKLFN----EDHQKVVGGMKSIETLGEYLIVEP 53 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~~~~ela~~~~----~~~~~v~~~~~~L~s~~glv~~e~ 53 (292)
..|..||..|-..+.++..++++.++ ++...|.+.+..|+.+ |+|.-+.
T Consensus 35 ~~e~~VL~~L~~~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~K-GlV~R~~ 87 (99)
T 2k4b_A 35 NAELIVMRVIWSLGEARVDEIYAQIPQELEWSLATVKTLLGRLVKK-EMLSTEK 87 (99)
T ss_dssp CSCSHHHHHHHHHSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHT-TSCEEEE
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHC-CCEEEEe
Confidence 34667899997667788899999886 4689999999999987 9998754
No 181
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=88.06 E-value=0.36 Score=46.83 Aligned_cols=47 Identities=13% Similarity=0.160 Sum_probs=39.5
Q ss_pred CCChHHHHHHHHHHHhhhCCceecCCCCccccceeccccCCCCCCCCCCCCCCceeec
Q psy10346 219 HLHPLMKVRAEFRQIFLDMGFTEMPTNNFVESSFWNFDALFQPQQHPARDAHDTFFVT 276 (292)
Q Consensus 219 ~~Hpl~~~~~~i~~if~~mGF~e~~~~~~Ves~f~NFD~L~~PqdHPAR~~~DTfyl~ 276 (292)
..|+-+.+++.||++|.+.||.|+. .|.++++ ..|+||++.+|.|.+
T Consensus 133 ~~~~rs~i~~~ir~ff~~~gF~eV~-TP~l~~~----------~~e~~~~~f~~~~~~ 179 (429)
T 1wyd_A 133 VIKIQSLALKAFRETLYKEGFIEIF-TPKIIAS----------ATEGGAQLFPVIYFG 179 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECC-CCSEESS----------CSSTTCCCCEEEETT
T ss_pred HHHHHHHHHHHHHHHHhhCCCEEEE-CCEEEee----------CCCCCceeEEEecCC
Confidence 4456788999999999999999986 5888776 689999999887654
No 182
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=87.70 E-value=1.4 Score=39.11 Aligned_cols=70 Identities=17% Similarity=0.156 Sum_probs=53.4
Q ss_pred HHHHHHHhcc-CCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeChhHHHHhhcCChHHHHH
Q psy10346 6 TEKILKYLDT-NPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELTGEGNQVKDNGSHEVLVF 79 (292)
Q Consensus 6 e~~iL~~L~~-~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LTeEG~~yl~~GlPE~rl~ 79 (292)
-.+||..|.. .+.....++|+.+|++...|.+.+..|+.. |||.-. ...|.|+...-.....-..-..+.
T Consensus 16 ~l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~~L~~~-G~v~~~---~~~Y~Lg~~~~~l~~~~~~~~~l~ 86 (257)
T 2g7u_A 16 GFAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQKL-GYVAGS---GGRWSLTPRVLSIGQHYSESHALI 86 (257)
T ss_dssp HHHHHHTCSSSCSSCBHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEE---TTEEEECGGGHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC-CCEEeC---CCEEEEcHHHHHHHHHhhccCcHH
Confidence 3467888864 345788999999999999999999999987 999865 378999988766554444433343
No 183
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=87.50 E-value=0.27 Score=47.60 Aligned_cols=47 Identities=15% Similarity=0.117 Sum_probs=22.4
Q ss_pred CChHHHHHHHHHHHhhhCCceecCCCCccccceeccccCCCCCCCCCCCCCCceeecC
Q psy10346 220 LHPLMKVRAEFRQIFLDMGFTEMPTNNFVESSFWNFDALFQPQQHPARDAHDTFFVTD 277 (292)
Q Consensus 220 ~Hpl~~~~~~i~~if~~mGF~e~~~~~~Ves~f~NFD~L~~PqdHPAR~~~DTfyl~~ 277 (292)
.+.-+.+++.||++|.++||.|+. .|.++++ ..||||++-+|.|.+.
T Consensus 125 ~~~rs~i~~~ir~~f~~~gF~EV~-TPil~~~----------~~e~~~~~f~~~~~g~ 171 (422)
T 1n9w_A 125 LKVQAALVRGFRRYLDRQDFTEIF-TPKVVRA----------GAEGGSGLFGVDYFEK 171 (422)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECC-CC-------------------------------
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEE-CCEEEEe----------CCCCCceeEEEeeCCC
Confidence 455678999999999999999996 5888876 6799999888766553
No 184
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=87.33 E-value=1.1 Score=41.73 Aligned_cols=70 Identities=7% Similarity=0.042 Sum_probs=53.8
Q ss_pred HHHHHHHHHhccC--CCCChHHHHHhcCC--CHH---HHHHHHHHhhccCCcEEEeee------eEEEEEeChhHHHHhh
Q psy10346 4 DLTEKILKYLDTN--PPVDTLDLAKLFNE--DHQ---KVVGGMKSIETLGEYLIVEPL------SHKIWELTGEGNQVKD 70 (292)
Q Consensus 4 ~~e~~iL~~L~~~--~~~~~~ela~~~~~--~~~---~v~~~~~~L~s~~glv~~e~~------~~~~~~LTeEG~~yl~ 70 (292)
..+..|...|.+. +..+.++||+.+|+ ++. .+-+.+.-|.+. |+++.... ....|.+|+.++.++.
T Consensus 40 a~~Lgifd~L~~~g~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~-g~l~~~~~~~~~g~~~~~y~~t~~s~~l~~ 118 (364)
T 3p9c_A 40 AIELGLLEILVAAGGKSLTPTEVAAKLPSAANPEAPDMVDRILRLLASY-NVVTCLVEEGKDGRLSRSYGAAPVCKFLTP 118 (364)
T ss_dssp HHHHTHHHHHHHTTTCCBCHHHHHHTTTCTTCTTHHHHHHHHHHHHHHT-TSEEEEEEECSSSCEEEEEEECGGGGGSSC
T ss_pred HHHCChHHHHhhcCCCCCCHHHHHHhcCCCCCccchhhHHHHHHHHHhC-CCEEEeccccCCCCcCCEEecCHHHHHHcC
Confidence 4566788888763 56889999999997 655 788999999987 99986532 1468999999987666
Q ss_pred cCCh
Q psy10346 71 NGSH 74 (292)
Q Consensus 71 ~GlP 74 (292)
.++|
T Consensus 119 ~~~~ 122 (364)
T 3p9c_A 119 NEDG 122 (364)
T ss_dssp CTTS
T ss_pred CCCC
Confidence 5544
No 185
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=86.80 E-value=0.83 Score=40.17 Aligned_cols=62 Identities=15% Similarity=0.105 Sum_probs=49.5
Q ss_pred HHHHHHHhccCC-CCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeChhHHHHh
Q psy10346 6 TEKILKYLDTNP-PVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELTGEGNQVK 69 (292)
Q Consensus 6 e~~iL~~L~~~~-~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LTeEG~~yl 69 (292)
-.+||..|...+ .....++|+.+|++...|.+.+..|+.. |||.-... ...|.|+.......
T Consensus 8 ~l~iL~~l~~~~~~~s~~ela~~~gl~~stv~r~l~~L~~~-G~v~~~~~-~~~Y~lg~~~~~lg 70 (241)
T 2xrn_A 8 AASIMRALGSHPHGLSLAAIAQLVGLPRSTVQRIINALEEE-FLVEALGP-AGGFRLGPALGQLI 70 (241)
T ss_dssp HHHHHHHHHTCTTCEEHHHHHHHTTSCHHHHHHHHHHHHTT-TSEEECGG-GCEEEECSHHHHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC-CCEEEeCC-CCeEEECHHHHHHH
Confidence 346888886544 5778999999999999999999999987 99986532 35799998776544
No 186
>2rkh_A Putative APHA-like transcription factor; ZP_00208345.1, STRU genomics, joint center for structural genomics, JCSG; 2.00A {Magnetospirillum magnetotacticum}
Probab=86.42 E-value=0.094 Score=45.25 Aligned_cols=66 Identities=8% Similarity=0.061 Sum_probs=43.9
Q ss_pred cHHHHHHHHHhccCCCCChHHHHHhc----CCCHHHHHH----HHHHhhccCCcEEEee-----eeEEEEEeChhHHHHh
Q psy10346 3 SDLTEKILKYLDTNPPVDTLDLAKLF----NEDHQKVVG----GMKSIETLGEYLIVEP-----LSHKIWELTGEGNQVK 69 (292)
Q Consensus 3 ~~~e~~iL~~L~~~~~~~~~ela~~~----~~~~~~v~~----~~~~L~s~~glv~~e~-----~~~~~~~LTeEG~~yl 69 (292)
+++...||..|.... -..+++.+.+ .+...++-. ++..|+.+ |+|++.. .+++.|.+|+.|++.+
T Consensus 12 ~~~~l~VLGlL~e~p-~h~Yei~~~i~~~~~~s~gSiY~~~~~~l~~Le~~-GlI~~~~~~~~rpektvY~ITe~Gr~~l 89 (180)
T 2rkh_A 12 EAVRLCALGTIASQP-MRYSELAGSVRHFTSRIMGPSLELMGISIELLRYE-GLVEAVDDGQGMEDDAMLAISAAGRREL 89 (180)
T ss_dssp HHHHHHHHHHHHHSC-EEHHHHHHHHHHHHHHHHSCCGGGTTCCTHHHHHT-TSEECCC--------CEEEECHHHHHHH
T ss_pred chHHHHHHHHHHhCC-CCHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHC-CCeeeeecCCCCCccceeeeCHHHHHHH
Confidence 567888999987543 3455565432 122334455 88999876 9996544 5788999999999987
Q ss_pred h
Q psy10346 70 D 70 (292)
Q Consensus 70 ~ 70 (292)
.
T Consensus 90 ~ 90 (180)
T 2rkh_A 90 H 90 (180)
T ss_dssp H
T ss_pred H
Confidence 4
No 187
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=85.79 E-value=0.68 Score=39.37 Aligned_cols=60 Identities=12% Similarity=0.235 Sum_probs=44.6
Q ss_pred cHHHHHHHHHhcc-----CCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeCh
Q psy10346 3 SDLTEKILKYLDT-----NPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELTG 63 (292)
Q Consensus 3 ~~~e~~iL~~L~~-----~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LTe 63 (292)
...|.+||..+.. +...+..++|+.+|++..+|.+.++.|+.+ |+|.........+.|++
T Consensus 4 t~~q~~il~~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l~~Le~~-G~i~~~~~~~r~i~~~~ 68 (196)
T 3k2z_A 4 TERQRKVLLFIEEFIEKNGYPPSVREIARRFRITPRGALLHLIALEKK-GYIERKNGKPRALRISK 68 (196)
T ss_dssp CHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHHT-TSEECC---TTCCEESS
T ss_pred CHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHHHHHHHC-CCEEecCCCcceEEecC
Confidence 4568888887742 335678999999999999999999999987 99987655545555554
No 188
>2ijl_A AGR_C_4647P, molybdenum-binding transcriptional repressor; structural GE DNA-binding protein, PSI-2, PROT structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=85.68 E-value=1.1 Score=36.59 Aligned_cols=62 Identities=5% Similarity=-0.009 Sum_probs=44.0
Q ss_pred HHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeee----EEEEEeChhHHHHh
Q psy10346 6 TEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLS----HKIWELTGEGNQVK 69 (292)
Q Consensus 6 e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~----~~~~~LTeEG~~yl 69 (292)
+.+++..+...+ +...-|+.+|+++.+|.+.++.||..-|.-=+++.. ...+.||++|+.++
T Consensus 28 ~L~~f~av~e~g--S~s~AA~~L~iSqsavS~~I~~LE~~lG~~Lf~R~~~G~~grg~~LT~~G~~ll 93 (135)
T 2ijl_A 28 KVELMQLIAETG--SISAAGRAMDMSYRRAWLLVDALNHMFRQPVICSQRGGKQGGGAALTVFGAELL 93 (135)
T ss_dssp HHHHHHHHHHHS--CHHHHHHHTTCCHHHHHHHHHHHHHHBSSCSEEECCC------EEECHHHHHHH
T ss_pred HHHHHHHHHHhC--CHHHHHHHHCcCHHHHHHHHHHHHHHHCCeeEEecCCCCCCCceeECHHHHHHH
Confidence 455666665544 345778889999999999999999765543333433 25799999999987
No 189
>2hgc_A YJCQ protein; SR346, structure, autostructure, NESG, PSI-2, northeast structural genomics consortium, protein structure initiative; NMR {Bacillus subtilis} SCOP: a.4.5.77
Probab=85.10 E-value=0.55 Score=37.05 Aligned_cols=75 Identities=15% Similarity=0.130 Sum_probs=50.2
Q ss_pred HHHHHHHHHhccCCC-CChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeee--EEE-----EEeChhHHHHhhcCChH
Q psy10346 4 DLTEKILKYLDTNPP-VDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLS--HKI-----WELTGEGNQVKDNGSHE 75 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~-~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~--~~~-----~~LTeEG~~yl~~GlPE 75 (292)
.+-++||+.|...+. ++ ++.+|++.......+..|... |||.--... ... ..+|.+|.+||++.|-=
T Consensus 5 ~iiYkIL~~L~~~~~~is----~e~l~Ise~~~~~il~~L~d~-GyI~Gv~~~~~~~~i~~~~~~IT~~GleYL~ENS~m 79 (102)
T 2hgc_A 5 KLRYAILKEIFEGNTPLS----ENDIGVTEDQFDDAVNFLKRE-GYIIGVHYSDDRPHLYKLGPELTEKGENYLKENGTW 79 (102)
T ss_dssp CCHHHHHHHHHHHCSCCC----HHHHTSCHHHHHHHHHHHHHH-TSEECCEESSSSEECCSSCCEECHHHHHHHHHHTCS
T ss_pred eeHHHHHHHHHhCCCcCC----HHhcCCCHHHHHHHHHHHHHC-CCccceEEEeCcceeeccCceECHHHHHHHHHChHH
Confidence 456899999976432 23 345799999999999999987 998753321 111 46999999999887655
Q ss_pred HHHHhhcC
Q psy10346 76 VLVFNNVP 83 (292)
Q Consensus 76 ~rl~~~l~ 83 (292)
.++++.++
T Consensus 80 kKa~k~lK 87 (102)
T 2hgc_A 80 SKAYKTIK 87 (102)
T ss_dssp CCC-----
T ss_pred HHHHHHHH
Confidence 55555554
No 190
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=85.09 E-value=0.8 Score=40.74 Aligned_cols=58 Identities=16% Similarity=0.114 Sum_probs=46.3
Q ss_pred HHHHHHhcc-CCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeChhHHH
Q psy10346 7 EKILKYLDT-NPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELTGEGNQ 67 (292)
Q Consensus 7 ~~iL~~L~~-~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LTeEG~~ 67 (292)
.+||..|.. .+.....++|+.+|++...+.+.+..|+.. |||.-.... .|.|+...-+
T Consensus 26 l~iL~~l~~~~~~~~~~eia~~~gl~kstv~r~l~tL~~~-G~v~~~~~~--~Y~lg~~~~~ 84 (260)
T 2o0y_A 26 IDLLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATMCAR-SVLTSRADG--SYSLGPEMLR 84 (260)
T ss_dssp HHHHTTCBTTBSSBCHHHHHHHHCCCHHHHHHHHHHHHHT-TSEEECTTS--CEEECHHHHH
T ss_pred HHHHHHHhhCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC-CCEEECCCC--eEEecHHHHH
Confidence 457777753 456788999999999999999999999987 999876433 8999876443
No 191
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=85.06 E-value=0.66 Score=35.94 Aligned_cols=47 Identities=17% Similarity=0.239 Sum_probs=37.7
Q ss_pred HHHHHHHhccCCCC-ChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEee
Q psy10346 6 TEKILKYLDTNPPV-DTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEP 53 (292)
Q Consensus 6 e~~iL~~L~~~~~~-~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~ 53 (292)
...|+..|..++.+ ...++|+.+|++...|..++..|++. |+|....
T Consensus 30 ~~~I~~~l~~g~~lps~~eLa~~lgVSr~tVr~al~~L~~~-GlI~~~~ 77 (102)
T 2b0l_A 30 IEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESA-GVIESRS 77 (102)
T ss_dssp HHHHTTSSBTTEEEECHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEEE
T ss_pred HHHHHhhhcCCCcCCCHHHHHHHHCcCHHHHHHHHHHHHHC-CCEEEEe
Confidence 45566555444445 77899999999999999999999987 9998766
No 192
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=85.01 E-value=1.3 Score=40.27 Aligned_cols=66 Identities=9% Similarity=0.060 Sum_probs=52.3
Q ss_pred HHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeChhHHHHhhcCCh
Q psy10346 4 DLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELTGEGNQVKDNGSH 74 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LTeEG~~yl~~GlP 74 (292)
..+..|+..|. .+..+..++|+.+|+++..+.+.++-|.+. |+++... ...|.+|+.++ ++..+.|
T Consensus 39 ~~~l~i~~~l~-~~~~t~~ela~~~~~~~~~l~r~L~~L~~~-g~~~~~~--~g~y~~t~~s~-~l~~~~~ 104 (360)
T 1tw3_A 39 AATLRLVDHIL-AGARTVKALAARTDTRPEALLRLIRHLVAI-GLLEEDA--PGEFVPTEVGE-LLADDHP 104 (360)
T ss_dssp HHHTTHHHHHH-TTCCBHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEEE--TTEEEECTTGG-GGSTTST
T ss_pred HHHhCHHHHHh-CCCCCHHHHHHHhCcCHHHHHHHHHHHHHC-CCEEecC--CCeEEeCHHHH-HHhcCCc
Confidence 45666788885 456788999999999999999999999997 9998643 34699999985 5555554
No 193
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=84.99 E-value=0.9 Score=41.11 Aligned_cols=65 Identities=11% Similarity=0.190 Sum_probs=53.8
Q ss_pred HHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeChhHHHHhhcC
Q psy10346 4 DLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELTGEGNQVKDNG 72 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LTeEG~~yl~~G 72 (292)
..+..|...|.+ +..+.+++|+.+|++...+-+++..|.+. |++... ....|.+|+.++.+...+
T Consensus 25 a~~lglf~~l~~-g~~t~~elA~~~~~~~~~l~rlLr~l~~~-gl~~~~--~~~~y~~t~~s~~l~~~~ 89 (332)
T 3i53_A 25 AATLRVADHIAA-GHRTAAEIASAAGAHADSLDRLLRHLVAV-GLFTRD--GQGVYGLTEFGEQLRDDH 89 (332)
T ss_dssp HHHHTHHHHHHT-TCCBHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEC--TTSBEEECTTGGGGSTTC
T ss_pred HHHcChHHHHhc-CCCCHHHHHHHHCcCHHHHHHHHHHHHhC-CcEEec--CCCeEEcCHhHHHHhcCC
Confidence 456678888864 57888999999999999999999999997 998753 246799999999886554
No 194
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=84.98 E-value=1.1 Score=41.38 Aligned_cols=61 Identities=10% Similarity=0.109 Sum_probs=48.7
Q ss_pred CC-cHHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeCh
Q psy10346 1 MA-SDLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELTG 63 (292)
Q Consensus 1 m~-~~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LTe 63 (292)
|. .....+||..|..++.++..++|+.+|++...|-+.++.|+.. |++...... .-|.|..
T Consensus 1 M~~~~r~~~Il~~L~~~~~~s~~eLa~~l~vS~~ti~r~l~~L~~~-G~~i~~~~g-~GY~l~~ 62 (321)
T 1bia_A 1 MKDNTVPLKLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLRDW-GVDVFTVPG-KGYSLPE 62 (321)
T ss_dssp CCCCHHHHHHHHHHTTSSCBCHHHHHHHHTSCHHHHHHHHHHHHHT-TCCCEEETT-TEEECSS
T ss_pred CCcchHHHHHHHHHHcCCCcCHHHHHHHHCCCHHHHHHHHHHHHhC-CCcEEEecC-CCcEEee
Confidence 44 4677889999987777899999999999999999999999986 887543322 3677654
No 195
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis}
Probab=84.95 E-value=0.8 Score=39.78 Aligned_cols=50 Identities=16% Similarity=0.322 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhhhCCceecCCCCccccceeccccCCCCCCCCCCCCCCceeecCCCC
Q psy10346 223 LMKVRAEFRQIFLDMGFTEMPTNNFVESSFWNFDALFQPQQHPARDAHDTFFVTDPKT 280 (292)
Q Consensus 223 l~~~~~~i~~if~~mGF~e~~~~~~Ves~f~NFD~L~~PqdHPAR~~~DTfyl~~~~~ 280 (292)
..++.+.|+++|.++||.|+-+.+.+..+ .||.|..+.++ ++..|.+|-+
T Consensus 6 ~~~~~~~ir~~l~~~G~~Evitysf~~~~--~~~~~~~~~~~------~~v~l~NPls 55 (213)
T 3ig2_A 6 SNKLQNLVAEQLVGCGFNEILNNSLTRAA--YYDGLESYPSK------NLVMLLNPLS 55 (213)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEECGG--GGTTCSSSCGG------GCEEBSSGGG
T ss_pred HHHHHHHHHHHHHHCCCeEEeccccCCHH--HHHhhcccCcC------CeEEEeCCcc
Confidence 35789999999999999999888887554 58888765433 5677877644
No 196
>3l09_A Putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG, protein structure initiative transcription regulator; 2.81A {Jannaschia SP}
Probab=84.27 E-value=2.8 Score=38.19 Aligned_cols=62 Identities=6% Similarity=0.010 Sum_probs=50.5
Q ss_pred CCCCCh---HHHHHhcCCCHHHHHHHHHHhhccCCcEEEeee-eEEEEEeChhHHHHhhcCChHHHHHh
Q psy10346 16 NPPVDT---LDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPL-SHKIWELTGEGNQVKDNGSHEVLVFN 80 (292)
Q Consensus 16 ~~~~~~---~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~-~~~~~~LTeEG~~yl~~GlPE~rl~~ 80 (292)
++.+.. ..+...+|++..+|-.++..|... |.++.++. -...|.||+.|++.+..| ..|++.
T Consensus 40 g~~i~~~~Li~l~~~~Gi~~~avR~Al~RL~~~-G~l~~~~~Gr~~~Y~Lt~~g~~~l~~~--~~ri~~ 105 (266)
T 3l09_A 40 VIEVSGVALSSFVERMGLQPQAMRVALHRLKRD-GWVESRRLGRVGFHRLSDSALTQTRAV--AGRIYG 105 (266)
T ss_dssp CCCEEHHHHHHHHHHTTCCHHHHHHHHHHHHHT-TSEEEEEETTEEEEEECHHHHHHHHTT--HHHHHS
T ss_pred CCcccHHHHHHHHHHcCCCchHHHHHHHHHHHC-CCeeeeecCCcceEEECHHHHHHHHHH--HHHhcC
Confidence 444544 456778999999999999999986 99988653 344899999999999999 778887
No 197
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=84.23 E-value=1.7 Score=39.78 Aligned_cols=69 Identities=10% Similarity=0.114 Sum_probs=53.6
Q ss_pred HHHHHHHHHhccC-CCCChHHHHHhcCC---CHHHHHHHHHHhhccCCcEEEeee---e-----EEEEEeChhHHHHhhc
Q psy10346 4 DLTEKILKYLDTN-PPVDTLDLAKLFNE---DHQKVVGGMKSIETLGEYLIVEPL---S-----HKIWELTGEGNQVKDN 71 (292)
Q Consensus 4 ~~e~~iL~~L~~~-~~~~~~ela~~~~~---~~~~v~~~~~~L~s~~glv~~e~~---~-----~~~~~LTeEG~~yl~~ 71 (292)
..+..|+..|... +..+..++|+.+|+ ++..+-++++.|.+. |+++.... . ...|.+|+.++ ++..
T Consensus 30 a~~lgif~~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~-gll~~~~~~~~~~~g~~~~~y~~t~~s~-~l~~ 107 (358)
T 1zg3_A 30 AMELGIADAIHNHGKPMTLSELASSLKLHPSKVNILHRFLRLLTHN-GFFAKTIVKGKEGDEEEEIAYSLTPPSK-LLIS 107 (358)
T ss_dssp HHHHTHHHHHHHHTSCEEHHHHHHHTTCCTTTHHHHHHHHHHHHHT-TSEEEEEECCSSSSCCCEEEEEECHHHH-TTCT
T ss_pred HHHCChHhHHhhcCCCcCHHHHHHhcCCCCcchHHHHHHHHHHhhC-CcEEEecccccccCCCCCCEEeCCHHHH-HHhC
Confidence 4566788888653 46788999999999 588899999999997 99986510 1 47899999987 5666
Q ss_pred CCh
Q psy10346 72 GSH 74 (292)
Q Consensus 72 GlP 74 (292)
+.|
T Consensus 108 ~~~ 110 (358)
T 1zg3_A 108 GKP 110 (358)
T ss_dssp TST
T ss_pred CCC
Confidence 665
No 198
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=84.23 E-value=0.97 Score=41.78 Aligned_cols=69 Identities=7% Similarity=0.161 Sum_probs=52.7
Q ss_pred HHHHHHHHHhccCC-C---CChHHHHHhcCC------CHHHHHHHHHHhhccCCcEEEeee--e----EEEEEeChhHHH
Q psy10346 4 DLTEKILKYLDTNP-P---VDTLDLAKLFNE------DHQKVVGGMKSIETLGEYLIVEPL--S----HKIWELTGEGNQ 67 (292)
Q Consensus 4 ~~e~~iL~~L~~~~-~---~~~~ela~~~~~------~~~~v~~~~~~L~s~~glv~~e~~--~----~~~~~LTeEG~~ 67 (292)
..+..|+..|...+ . .+..+||+.+|+ ++..+-++++.|.+. |+++.... . ...|.+|+.++
T Consensus 44 a~~lgif~~L~~~g~pg~~~t~~eLA~~~~~~~~~~~~~~~l~rlLr~L~~~-gll~~~~~~~~~g~~~~~y~~t~~s~- 121 (372)
T 1fp1_D 44 AIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASY-SVLTSTTRTIEDGGAERVYGLSMVGK- 121 (372)
T ss_dssp HHHTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHT-TSEEEEEEECTTSCEEEEEEECTTGG-
T ss_pred HHHCChHHHHHhcCCCCCCcCHHHHHHhcCCCCCCCcChHHHHHHHHHHhhC-CceEecccccCCCCcCCeEecCHHHH-
Confidence 34566778887544 4 788999999999 677899999999987 99986521 1 46899999987
Q ss_pred HhhcCCh
Q psy10346 68 VKDNGSH 74 (292)
Q Consensus 68 yl~~GlP 74 (292)
++..+.|
T Consensus 122 ~L~~~~~ 128 (372)
T 1fp1_D 122 YLVPDES 128 (372)
T ss_dssp GGSTTCT
T ss_pred HHhCCCC
Confidence 5656655
No 199
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=84.00 E-value=0.81 Score=41.93 Aligned_cols=62 Identities=15% Similarity=0.179 Sum_probs=50.5
Q ss_pred HHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeChhHHHHhhc
Q psy10346 5 LTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELTGEGNQVKDN 71 (292)
Q Consensus 5 ~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LTeEG~~yl~~ 71 (292)
.+..|...|.+ +..+.+++|+.+|++...+-+++..|.+. |+++. ....|.+|+.++.++..
T Consensus 43 ~~lglf~~l~~-g~~t~~elA~~~g~~~~~l~rlLr~l~~~-g~l~~---~~~~y~~t~~s~~l~~~ 104 (348)
T 3lst_A 43 AAVGVADHLVD-GPRTPAELAAATGTDADALRRVLRLLAVR-DVVRE---SDGRFALTDKGAALRSD 104 (348)
T ss_dssp HHHTGGGGGTT-SCBCHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEE---ETTEEEECTTTGGGSTT
T ss_pred HHcCchhHhhC-CCCCHHHHHHHhCcCHHHHHHHHHHHHhC-CCEEe---cCCEEecCHHHHHHhcC
Confidence 44556666653 56788999999999999999999999997 99986 45679999999887544
No 200
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=83.63 E-value=1.3 Score=39.89 Aligned_cols=65 Identities=9% Similarity=0.089 Sum_probs=51.6
Q ss_pred HHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeChhHHHHhhcCCh
Q psy10346 4 DLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELTGEGNQVKDNGSH 74 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LTeEG~~yl~~GlP 74 (292)
..+..|+..|.+ +..+.+++|+.+|++...+-+.++-|.+. |++.... ...|.+|+.++.++ +.|
T Consensus 28 ~~~lgi~~~l~~-~~~t~~ela~~~~~~~~~l~r~Lr~L~~~-g~l~~~~--~~~y~~t~~s~~l~--~~~ 92 (334)
T 2ip2_A 28 ATRLGLADLIES-GIDSDETLAAAVGSDAERIHRLMRLLVAF-EIFQGDT--RDGYANTPTSHLLR--DVE 92 (334)
T ss_dssp HHHTTHHHHHHT-TCCSHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEET--TTEEEECHHHHTTS--SST
T ss_pred HHHcCcHHHHhC-CCCCHHHHHHHhCcCHHHHHHHHHHHHhC-CceEecC--CCeEecCHHHHHHh--CCC
Confidence 345567777754 56888999999999999999999999997 9997542 25799999997554 554
No 201
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=83.11 E-value=0.99 Score=41.31 Aligned_cols=68 Identities=13% Similarity=0.016 Sum_probs=51.6
Q ss_pred HHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeChhHHHHhhcCCh
Q psy10346 4 DLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELTGEGNQVKDNGSH 74 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LTeEG~~yl~~GlP 74 (292)
..+..|+..|. .+..+..++|+.+|+++..+.+.++-|.+. |++.........|.+|..++. +..+.|
T Consensus 36 ~~~l~i~~~l~-~~~~t~~eLA~~~g~~~~~l~r~Lr~L~~~-Gll~~~~~~~~~y~~t~~s~~-l~~~~~ 103 (374)
T 1qzz_A 36 AATLRLVDHLL-AGADTLAGLADRTDTHPQALSRLVRHLTVV-GVLEGGEKQGRPLRPTRLGML-LADGHP 103 (374)
T ss_dssp HHHTTHHHHHH-TTCCSHHHHHHHHTCCHHHHHHHHHHHHHT-TSEECCCC-CCCCEECTTGGG-GSTTCT
T ss_pred HHHcChHHHHh-CCCCCHHHHHHHhCcCHHHHHHHHHHHhhC-CCEEEeCCCCeEEEEChHHHh-hcCCCc
Confidence 45666788884 466888999999999999999999999997 999753221227999999854 444443
No 202
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=82.90 E-value=1.8 Score=40.51 Aligned_cols=65 Identities=22% Similarity=0.328 Sum_probs=50.6
Q ss_pred CcHHHHHHHH-----HhccCCCCChHHHHHhc--CCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeChhHHHH
Q psy10346 2 ASDLTEKILK-----YLDTNPPVDTLDLAKLF--NEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELTGEGNQV 68 (292)
Q Consensus 2 ~~~~e~~iL~-----~L~~~~~~~~~ela~~~--~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LTeEG~~y 68 (292)
.+.-+++||. +|..++++.+.++|+.+ |++...|-+.+..|+.. |++.- ....---..|+.|.++
T Consensus 15 l~eR~~~IL~~i~~~yl~~~~pV~s~~La~~~~l~VS~aTIRrDL~~LE~~-GlL~r-~HgsAgript~~g~r~ 86 (338)
T 1stz_A 15 LNDRQRKVLYCIVREYIENKKPVSSQRVLEVSNIEFSSATIRNDMKKLEYL-GYIYQ-PHTSAGRIPTDKGLRF 86 (338)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSCBCHHHHHHHSCCCSCHHHHHHHHHHHHHT-TSEEC-CSSCSCBEECHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCccHHHHHHHhCCCCCHHHHHHHHHHHHHC-CCEEE-ccCcceecCCcccchh
Confidence 4577889999 78888999999999998 89999999999999987 99873 2221112467777553
No 203
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=81.44 E-value=1.6 Score=40.47 Aligned_cols=57 Identities=16% Similarity=0.172 Sum_probs=44.4
Q ss_pred HHHHHHHHhc--cCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeCh
Q psy10346 5 LTEKILKYLD--TNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELTG 63 (292)
Q Consensus 5 ~e~~iL~~L~--~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LTe 63 (292)
...+||..|. ++..++.+++|+.+|++..+|-..++.|++. |++. +.....-|.|..
T Consensus 4 ~~~~iL~~L~~~~g~~~Sg~eLa~~lgvSr~aV~k~i~~L~~~-G~~i-~~~~~~GY~L~~ 62 (323)
T 3rkx_A 4 YSQDVLQLLYKNKPNYISGQSIAESLNISRTAVKKVIDQLKLE-GCKI-DSVNHKGHLLQQ 62 (323)
T ss_dssp HHHHHHHHHHHHTTSCBCHHHHHHHHTSCHHHHHHHHHHHHHT-TCEE-EEETTTEEEEEE
T ss_pred HHHHHHHHHHhCCCCccCHHHHHHHHCCCHHHHHHHHHHHHhc-CCeE-EEeCCCeEEEec
Confidence 4568999994 3446788999999999999999999999986 8843 333445777664
No 204
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=81.39 E-value=0.35 Score=39.92 Aligned_cols=48 Identities=13% Similarity=0.257 Sum_probs=42.8
Q ss_pred cHHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEE
Q psy10346 3 SDLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIV 51 (292)
Q Consensus 3 ~~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~ 51 (292)
..+..+||..|..++.+...++|+.+|++...|..+++.|++. |+|..
T Consensus 12 d~l~~~Il~~l~~~~~ls~~eLa~~lgvSr~~vr~al~~L~~~-Gli~~ 59 (163)
T 2gqq_A 12 DRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQ-GFIQG 59 (163)
T ss_dssp CSHHHHHHHHHHHCSSCCTTGGGTSSSCCTTTSSSTHHHHHHH-TSEEE
T ss_pred hHHHHHHHHHHHhCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC-CcEEE
Confidence 4677889998888888877899999999999999999999987 99985
No 205
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=81.20 E-value=1.3 Score=36.11 Aligned_cols=58 Identities=14% Similarity=0.033 Sum_probs=44.0
Q ss_pred HHHHHHHhcc--CCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeChhH
Q psy10346 6 TEKILKYLDT--NPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELTGEG 65 (292)
Q Consensus 6 e~~iL~~L~~--~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LTeEG 65 (292)
..++|..|.. ++.+.+.++|+.+|++...|.+.+..|... |+|...+- .--|.|+...
T Consensus 16 Al~~L~~La~~~~~~~~~~~iA~~~~i~~~~l~kil~~L~~~-Glv~s~rG-~GGy~L~~~p 75 (149)
T 1ylf_A 16 AVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQA-GFVYVNRG-PGGAGLLKDL 75 (149)
T ss_dssp HHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHT-TSEEEC----CCEEESSCG
T ss_pred HHHHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC-CcEEEccC-CCceEeCCCh
Confidence 3556666653 345788999999999999999999999976 99987766 6668777554
No 206
>2l02_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=81.18 E-value=3.7 Score=31.12 Aligned_cols=50 Identities=14% Similarity=0.157 Sum_probs=41.1
Q ss_pred HHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEE
Q psy10346 8 KILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKI 58 (292)
Q Consensus 8 ~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~ 58 (292)
.|-.+|.+.+..+..++++..|++...|..++-||.- +|=|.+++.....
T Consensus 12 ~VW~~L~~~~~~s~~el~k~t~l~d~el~lAIGWLaR-EdKI~~~~~~~~l 61 (82)
T 2l02_A 12 KVWHALNEADGISIPELARKVNLSVESTALAVGWLAR-ENKVVIERKNGLI 61 (82)
T ss_dssp HHHHHHHHCCSBCHHHHHHHHTCCHHHHHHHHHHHHT-TTSEEEEEETTEE
T ss_pred HHHHHHhccCCCCHHHHHHHhCCCHHHHHHHHHHHhc-cCceeEEeeCCEE
Confidence 5677887777888899999999999999999999975 5888887654433
No 207
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=81.12 E-value=2 Score=35.19 Aligned_cols=54 Identities=9% Similarity=0.062 Sum_probs=40.8
Q ss_pred CChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeChhHHHHhhcCChH
Q psy10346 19 VDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELTGEGNQVKDNGSHE 75 (292)
Q Consensus 19 ~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LTeEG~~yl~~GlPE 75 (292)
++-.++|..+|++++.|.+.++.|+.. |+|+.... ....+-.++.+-+..+.||
T Consensus 140 ~t~~~lA~~lg~sr~tvsR~l~~L~~~-g~I~~~~~--~i~i~d~~~L~~~~~~~~e 193 (195)
T 3b02_A 140 VSHEEIADATASIRESVSKVLADLRRE-GLIATAYR--RVYLLDLAALEREAGSALE 193 (195)
T ss_dssp CCHHHHHHTTTSCHHHHHHHHHHHHHH-TSEEEETT--EEEECCHHHHHHHHCSCCC
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHC-CCEEecCC--EEEEeCHHHHHHHhccccc
Confidence 456899999999999999999999987 99987653 3445555665555455444
No 208
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis}
Probab=80.49 E-value=1.4 Score=38.17 Aligned_cols=51 Identities=16% Similarity=0.275 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhhhCCceecCCCCccccceeccccCCCCCCCCCCCCCCceeecCCCCC
Q psy10346 223 LMKVRAEFRQIFLDMGFTEMPTNNFVESSFWNFDALFQPQQHPARDAHDTFFVTDPKTS 281 (292)
Q Consensus 223 l~~~~~~i~~if~~mGF~e~~~~~~Ves~f~NFD~L~~PqdHPAR~~~DTfyl~~~~~~ 281 (292)
..++.+.|+++|.++||.|+-+.+.+..+ +||.+..+.++ ++..|.+|-+.
T Consensus 6 ~~~~~~~ir~~L~~~G~~Evitysf~s~~--~~~~~~~~~~~------~~v~l~NPls~ 56 (213)
T 3ica_A 6 RYKWQTVVSEQLVGAGFNEILNNSLTAGS--YYEGLKSHPRE------MAVELMNPLSQ 56 (213)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEEEGG--GGTTCSSSCGG------GCCBCSSBSCS
T ss_pred HHHHHHHHHHHHHHCCCceeeeccCCCHH--HHhhhcccCcC------CeEEecCCccH
Confidence 45789999999999999999888887544 78888765333 34566666443
No 209
>3szp_A Transcriptional regulator, LYSR family; winged helix-turn helix, DNA-binding, transcription factor; 2.20A {Vibrio cholerae} PDB: 3t1b_B
Probab=80.36 E-value=1.7 Score=36.80 Aligned_cols=61 Identities=10% Similarity=0.045 Sum_probs=45.5
Q ss_pred HHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeChhHHHHhh
Q psy10346 7 EKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELTGEGNQVKD 70 (292)
Q Consensus 7 ~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LTeEG~~yl~ 70 (292)
.+++..+.+.+ +...-|+.+++++.+|.+.++.||..-|. ..-.+....++||++|+.++.
T Consensus 6 l~~f~~v~~~~--s~t~AA~~L~isq~avS~~i~~LE~~lg~-~Lf~R~~~~~~lT~~G~~l~~ 66 (291)
T 3szp_A 6 LNLFRLVVENG--SYTSTSKKTMIPVATITRRIQALEDSLNL-RLLNRHARKLTLTEAGERFYK 66 (291)
T ss_dssp HHHHHHHHHHS--SHHHHHHHHTCCHHHHHHHHHHHHHHHTC-CCEEEETTEEEECHHHHHHHH
T ss_pred HHHHHHHHhcC--CHHHHHHHhCCCHHHHHHHHHHHHHHhCC-ceEeecCCCcccCHhHHHHHH
Confidence 34444554433 35677888999999999999999976444 445556778999999999874
No 210
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=79.91 E-value=1.6 Score=39.93 Aligned_cols=69 Identities=13% Similarity=0.190 Sum_probs=51.7
Q ss_pred HHHHHHHHHhccC-CCCChHHHHHhcCCC---HHHHHHHHHHhhccCCcEEEeeeeEEEEEeChhHHHHhhcCCh
Q psy10346 4 DLTEKILKYLDTN-PPVDTLDLAKLFNED---HQKVVGGMKSIETLGEYLIVEPLSHKIWELTGEGNQVKDNGSH 74 (292)
Q Consensus 4 ~~e~~iL~~L~~~-~~~~~~ela~~~~~~---~~~v~~~~~~L~s~~glv~~e~~~~~~~~LTeEG~~yl~~GlP 74 (292)
..+..|+..|... +..+..++|+.+|++ +..+-+.++.|.+. |+++........|.+|+.++ ++..+.|
T Consensus 36 a~~lgif~~L~~~~~~~t~~ela~~~~~~~~~~~~l~rlLr~L~~~-gll~~~~~~~~~y~~t~~s~-~L~~~~~ 108 (352)
T 1fp2_A 36 AVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLMRYLAHN-GFFEIITKEEESYALTVASE-LLVRGSD 108 (352)
T ss_dssp HHHTTHHHHHHHHTSCEEHHHHHHHHTCCGGGHHHHHHHHHHHHHT-TSEEEEESSSEEEEECHHHH-TTSTTSS
T ss_pred HHHCChhhhhhhcCCCccHHHHHHHhCcCCCChHHHHHHHHHHHhC-CeEEEecCCCCeEeCCHHHH-HHhCCCC
Confidence 3455677777653 467889999999994 77888999999987 99986421146899999998 5556655
No 211
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=79.79 E-value=1.6 Score=38.85 Aligned_cols=54 Identities=15% Similarity=0.180 Sum_probs=44.5
Q ss_pred HHHHHHhcc-CCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeChh
Q psy10346 7 EKILKYLDT-NPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELTGE 64 (292)
Q Consensus 7 ~~iL~~L~~-~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LTeE 64 (292)
.+||..|.. .+.....++|..+|++.+.|.+.+..|+.. |||.-. ...|.|+..
T Consensus 24 l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~tL~~~-G~v~~~---~~~Y~Lg~~ 78 (265)
T 2ia2_A 24 LAVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLVEL-GYVATD---GSAFWLTPR 78 (265)
T ss_dssp HHHHHTCCSSCSSEEHHHHHHHHTCCHHHHHHHHHHHHHH-TSEEES---SSEEEECGG
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC-CCEEec---CCEEEEcHH
Confidence 457887764 345778999999999999999999999987 999865 378999764
No 212
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=79.52 E-value=1.6 Score=37.95 Aligned_cols=63 Identities=13% Similarity=0.058 Sum_probs=47.1
Q ss_pred HHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeChhHHHHhh
Q psy10346 5 LTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELTGEGNQVKD 70 (292)
Q Consensus 5 ~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LTeEG~~yl~ 70 (292)
.+.+++..+.+.+ +...-|+.+++++.+|.+.++.||..-|. ..-.+....++||++|+.++.
T Consensus 5 ~~L~~f~~v~~~g--s~t~AA~~L~isq~avS~~i~~LE~~lg~-~Lf~R~~r~~~lT~~G~~l~~ 67 (305)
T 3fxq_A 5 QTLQALICIEEVG--SLRAAAQLLHLSQPALSAAIQQLEDELKA-PLLVRTKRGVSLTSFGQAFMK 67 (305)
T ss_dssp HHHHHHHHHHHHS--CHHHHHHHTTCCHHHHHHHHHHHHHHHTS-CSEEECSSSEEECHHHHHHHH
T ss_pred HHHHHHHHHHHcC--CHHHHHHHhCCCHHHHHHHHHHHHHHhCC-eeEEecCCCccCCHhHHHHHH
Confidence 3455555565444 35677889999999999999999976443 334456778999999999873
No 213
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=79.45 E-value=0.48 Score=36.01 Aligned_cols=48 Identities=10% Similarity=0.102 Sum_probs=35.7
Q ss_pred HHHHHH-HhccCCCC-ChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeee
Q psy10346 6 TEKILK-YLDTNPPV-DTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPL 54 (292)
Q Consensus 6 e~~iL~-~L~~~~~~-~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~ 54 (292)
...|+. .+..+..+ ...++|+.+|++...|.+++..|++. |+|.....
T Consensus 21 ~~~I~~~~l~~g~~lps~~eLa~~~~vSr~tvr~al~~L~~~-Gli~~~~g 70 (102)
T 1v4r_A 21 RTLIKSGELAPGDTLPSVADIRAQFGVAAKTVSRALAVLKSE-GLVSSRGA 70 (102)
T ss_dssp HHHTTTTSCCTTSBCCCHHHHHHHSSSCTTHHHHHTTTTTTS-SCCEEETT
T ss_pred HHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC-CCEEEeCC
Confidence 334443 23334445 67899999999999999999999986 99976543
No 214
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=79.10 E-value=1.9 Score=37.32 Aligned_cols=65 Identities=5% Similarity=-0.117 Sum_probs=47.7
Q ss_pred HHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeChhHHHHhhcCC
Q psy10346 6 TEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELTGEGNQVKDNGS 73 (292)
Q Consensus 6 e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LTeEG~~yl~~Gl 73 (292)
+.+++..+.+.+ +...-|+.+++++.+|.+.++.||..-|. ..-.+....+.||+.|+.++..-.
T Consensus 14 ~L~~f~~v~~~g--s~s~AA~~L~isq~avS~~I~~LE~~lg~-~Lf~R~~~~~~lT~~G~~l~~~a~ 78 (310)
T 2esn_A 14 LLLVFDALYRHR--NVGTAASELAISASAFSHALGRLRQGLDD-ELFLRQGNRMQPTQRAEHLAAAVA 78 (310)
T ss_dssp HHHHHHHHHHHS--SHHHHHHHHTCCHHHHHHHHHHHHHHHTS-CCEEEETTEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC--CHHHHHHHhCCChHHHHHHHHHHHHhhCC-cceeecCCCccccHHHHHHHHHHH
Confidence 345555554444 35677888999999999999999976454 334455678999999999885543
No 215
>2l01_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=78.41 E-value=4.2 Score=30.47 Aligned_cols=51 Identities=10% Similarity=0.163 Sum_probs=42.6
Q ss_pred HHHHHhccCCCCChHHHHHhcCC-CHHHHHHHHHHhhccCCcEEEeeeeEEEE
Q psy10346 8 KILKYLDTNPPVDTLDLAKLFNE-DHQKVVGGMKSIETLGEYLIVEPLSHKIW 59 (292)
Q Consensus 8 ~iL~~L~~~~~~~~~ela~~~~~-~~~~v~~~~~~L~s~~glv~~e~~~~~~~ 59 (292)
.|-.+|...+..+..++++..|+ +...+..++-||.- .|=|.+++.....|
T Consensus 14 ~VW~~L~~~~~~s~~el~k~t~l~~d~el~lAiGWLaR-EdKI~~~~~~~~l~ 65 (77)
T 2l01_A 14 QIWEALNGTEGLTQKQIKKATKLKADKDFFLGLGWLLR-EDKVVTSEVEGEIF 65 (77)
T ss_dssp HHHHHHTTSSCEEHHHHHHHHTCSCHHHHHHHHHHHHH-TTCEEEEEETTEEE
T ss_pred HHHHHHhcCCCCCHHHHHHHHCCCCHHHHHHHHHHHhh-cCceEEEeeCCEEE
Confidence 57778877777788999999999 99999999999975 48888877766555
No 216
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=78.36 E-value=1.3 Score=38.26 Aligned_cols=64 Identities=9% Similarity=-0.053 Sum_probs=40.2
Q ss_pred HHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeee-EEEEEeChhHHHHhhc
Q psy10346 5 LTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLS-HKIWELTGEGNQVKDN 71 (292)
Q Consensus 5 ~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~-~~~~~LTeEG~~yl~~ 71 (292)
.+.+++..+.+.+ +...-|+.+++++.+|.+.++.||+.=|. ..-.+. ...++||+.|+.++..
T Consensus 7 ~~l~~f~~v~~~~--s~s~AA~~L~isq~avS~~i~~LE~~lg~-~Lf~R~~~~~~~lT~~G~~l~~~ 71 (306)
T 3fzv_A 7 RQLKYFVTTVECG--SVAEASRKLYIAQPSISTAVKGLEESFGV-QLFIRHHAQGVSLTPAGARFYRK 71 (306)
T ss_dssp HHHHHHHHHHHSS--SHHHHHHHHTCCC-CHHHHHHHHHHHC-C-CCC---------CCHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CHHHHHHHhCCCchHHHHHHHHHHHHhCC-eeEeecCCCCceECHhHHHHHHH
Confidence 3455556665554 45677888999999999999999976443 333443 6779999999998743
No 217
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=77.91 E-value=2.5 Score=35.60 Aligned_cols=57 Identities=21% Similarity=0.412 Sum_probs=44.6
Q ss_pred HHHHHHHHHhccC-CCCChHHHHHhcCCCHHHHHHHHHHhhccCCc-EEEeeeeEEEEEeChh
Q psy10346 4 DLTEKILKYLDTN-PPVDTLDLAKLFNEDHQKVVGGMKSIETLGEY-LIVEPLSHKIWELTGE 64 (292)
Q Consensus 4 ~~e~~iL~~L~~~-~~~~~~ela~~~~~~~~~v~~~~~~L~s~~gl-v~~e~~~~~~~~LTeE 64 (292)
....+||..|..+ +.++..++|+.+|++...|.+.++.|++. |+ |... ..-|.|+..
T Consensus 21 ~R~~~Il~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~~-G~~I~~~---~~Gy~l~~~ 79 (187)
T 1j5y_A 21 ERLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSL-GYNIVAT---PRGYVLAGG 79 (187)
T ss_dssp HHHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHHH-TCCCEEE---TTEEECCTT
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC-CCeEEEE---CCEEEECCc
Confidence 4567799999754 55889999999999999999999999987 88 6542 245666643
No 218
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=77.44 E-value=4.3 Score=33.75 Aligned_cols=72 Identities=13% Similarity=0.060 Sum_probs=55.7
Q ss_pred cHHHHHHHHHhccCCCCChHHHHHhc-----CCCHHHHHHHHHHhhccCCcEEEeee-eEEEEEeChhHHHHhhcCChHH
Q psy10346 3 SDLTEKILKYLDTNPPVDTLDLAKLF-----NEDHQKVVGGMKSIETLGEYLIVEPL-SHKIWELTGEGNQVKDNGSHEV 76 (292)
Q Consensus 3 ~~~e~~iL~~L~~~~~~~~~ela~~~-----~~~~~~v~~~~~~L~s~~glv~~e~~-~~~~~~LTeEG~~yl~~GlPE~ 76 (292)
+..+..|+..|..++..+.++++..+ ++.+..|-|.++.| |++++... -...|.|-.++. ..|+.
T Consensus 4 ~~R~~~I~~li~~~~~~tq~eL~~~L~~~G~~VtqaTisRDL~eL----~~vKv~~~~g~~~Y~lp~~~~-----~~~~~ 74 (149)
T 1b4a_A 4 GQRHIKIREIIMSNDIETQDELVDRLREAGFNVTQATVSRDIKEM----QLVKVPMANGRYKYSLPSDQR-----FNPLQ 74 (149)
T ss_dssp CHHHHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHT----TCEEEECSSSCEEEECTTCSS-----SCHHH
T ss_pred HHHHHHHHHHHHHCCCccHHHHHHHHHHcCCCcCHHHHHHHHHHc----CCeEEECCCCCEEEEeCCCCC-----cchHH
Confidence 56778899999888888889999988 88999999999999 47888543 446788866542 24767
Q ss_pred HHHhhcC
Q psy10346 77 LVFNNVP 83 (292)
Q Consensus 77 rl~~~l~ 83 (292)
++.+.+.
T Consensus 75 ~l~~~~~ 81 (149)
T 1b4a_A 75 KLKRALV 81 (149)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766665
No 219
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=77.40 E-value=1.2 Score=39.65 Aligned_cols=57 Identities=14% Similarity=0.237 Sum_probs=45.3
Q ss_pred HHHHHHHhcc-CCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeChh
Q psy10346 6 TEKILKYLDT-NPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELTGE 64 (292)
Q Consensus 6 e~~iL~~L~~-~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LTeE 64 (292)
-.+||.+|.. .+.....++|..+|++.+.+.+.+..|+.. |||.-.. ....|.|+..
T Consensus 8 al~IL~~l~~~~~~lsl~eia~~lgl~ksT~~RlL~tL~~~-G~v~~~~-~~~~Y~lG~~ 65 (260)
T 3r4k_A 8 ALTLLTYFNHGRLEIGLSDLTRLSGMNKATVYRLMSELQEA-GFVEQVE-GARSYRLGPQ 65 (260)
T ss_dssp HHHHHTTCBTTBSEEEHHHHHHHHCSCHHHHHHHHHHHHHT-TSEEECS-SSSEEEECTT
T ss_pred HHHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC-CCEEEcC-CCCcEEcCHH
Confidence 3467888865 345778999999999999999999999987 9997543 3356888865
No 220
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=77.15 E-value=1.8 Score=37.28 Aligned_cols=64 Identities=14% Similarity=-0.002 Sum_probs=48.6
Q ss_pred HHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeChhHHHHhhc
Q psy10346 5 LTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELTGEGNQVKDN 71 (292)
Q Consensus 5 ~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LTeEG~~yl~~ 71 (292)
.+.+++.++.+.+ +...-|+.+|+++.+|.+.++.||..-|. ..-.+....++||+.|+.++..
T Consensus 6 ~~l~~f~~v~~~g--s~t~AA~~L~isq~avS~~i~~LE~~lg~-~Lf~R~~~~~~lT~~G~~l~~~ 69 (306)
T 3hhg_A 6 EELTVFVQVVESG--SFSRAAEQLAMANSAVSRIVKRLEEKLGV-NLLNRTTRQLSLTEEGAQYFRR 69 (306)
T ss_dssp HHHHHHHHHHHSS--SHHHHHHHHTCCHHHHHHHHHHHHHHHTS-CCEETTSSSCEECHHHHHHHHH
T ss_pred HHHHHHHHHHHcC--CHHHHHHHhCCCHHHHHHHHHHHHHHhCC-eeEeecCCCeeECHhHHHHHHH
Confidence 4456666666554 45677888999999999999999976454 4445566789999999998743
No 221
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=76.78 E-value=5 Score=37.06 Aligned_cols=70 Identities=6% Similarity=0.102 Sum_probs=51.8
Q ss_pred HHHHHHHHHhccC----CCCChHHHHHhcCC-CH---HHHHHHHHHhhccCCcEEEeee------eEEEEEeChhHHHHh
Q psy10346 4 DLTEKILKYLDTN----PPVDTLDLAKLFNE-DH---QKVVGGMKSIETLGEYLIVEPL------SHKIWELTGEGNQVK 69 (292)
Q Consensus 4 ~~e~~iL~~L~~~----~~~~~~ela~~~~~-~~---~~v~~~~~~L~s~~glv~~e~~------~~~~~~LTeEG~~yl 69 (292)
..+..|...|.+. +..+.++||+.+|. ++ ..+-+++..|.+. |+++.... ....|.+|+.++.++
T Consensus 41 a~~Lglfd~L~~~~gp~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~-gll~~~~~~~~~g~~~~~y~~t~~s~~l~ 119 (368)
T 3reo_A 41 AIELDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPVMLDRVLRLLASY-SVVTYTLRELPSGKVERLYGLAPVCKFLT 119 (368)
T ss_dssp HHHTTHHHHHHHHCCTTCCBCHHHHHTTSSCCCTTHHHHHHHHHHHHHHT-TSEEEEEEECTTSCEEEEEEECTTHHHHS
T ss_pred HHHCCchhHHhhcCCCCCCcCHHHHHHhcCcCCCcchhhHHHHHHHHHhC-CCeEEecccCCCCcccceeCcCHHHHHHh
Confidence 4455677778652 35788999999873 43 3788999999987 99986521 146899999999887
Q ss_pred hcCCh
Q psy10346 70 DNGSH 74 (292)
Q Consensus 70 ~~GlP 74 (292)
.+.+|
T Consensus 120 ~~~~~ 124 (368)
T 3reo_A 120 KNEDG 124 (368)
T ss_dssp CCTTS
T ss_pred CCCCC
Confidence 76654
No 222
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=76.54 E-value=1.5 Score=39.39 Aligned_cols=55 Identities=13% Similarity=0.266 Sum_probs=43.7
Q ss_pred HHHHHHhccCC-CCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeChh
Q psy10346 7 EKILKYLDTNP-PVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELTGE 64 (292)
Q Consensus 7 ~~iL~~L~~~~-~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LTeE 64 (292)
.+||.+|...+ .....++|..+|++.+.+.+.+..|... |||.-.. ...|.|+..
T Consensus 33 l~IL~~l~~~~~~ltl~eia~~lgl~ksTv~RlL~tL~~~-G~v~~~~--~~~Y~LG~~ 88 (275)
T 3mq0_A 33 VRILDLVAGSPRDLTAAELTRFLDLPKSSAHGLLAVMTEL-DLLARSA--DGTLRIGPH 88 (275)
T ss_dssp HHHHHHHHHCSSCEEHHHHHHHHTCC--CHHHHHHHHHHT-TSEEECT--TSEEEECTH
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC-CCEEECC--CCcEEehHH
Confidence 45888886544 5788999999999999999999999987 9998654 257999875
No 223
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=75.71 E-value=4.9 Score=32.08 Aligned_cols=39 Identities=13% Similarity=0.041 Sum_probs=32.7
Q ss_pred ChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEE
Q psy10346 20 DTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIW 59 (292)
Q Consensus 20 ~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~ 59 (292)
+-.++|+.+|++...|..++..|++. |+|......-.++
T Consensus 30 se~~La~~~gvSr~tVr~Al~~L~~~-Gli~~~~g~G~~V 68 (129)
T 2ek5_A 30 STNELAAFHRINPATARNGLTLLVEA-GILYKKRGIGMFV 68 (129)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHTT-TSEEEETTTEEEE
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHC-CcEEEecCCEEEE
Confidence 45799999999999999999999987 9998766654433
No 224
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=74.99 E-value=3 Score=33.89 Aligned_cols=60 Identities=7% Similarity=-0.064 Sum_probs=46.2
Q ss_pred HHHHHHHHHhccC---CCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeChh
Q psy10346 4 DLTEKILKYLDTN---PPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELTGE 64 (292)
Q Consensus 4 ~~e~~iL~~L~~~---~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LTeE 64 (292)
....++|..|... +.+.+.++|+..|+++.-|.+.+..|... |+|...+-..--|.|+..
T Consensus 11 ~yAl~~L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~~a-Glv~s~rG~~GGy~Lar~ 73 (143)
T 3t8r_A 11 RYGLTLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNA-GLIRSVRGAKGGYQLRVP 73 (143)
T ss_dssp HHHHHHHHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHHHT-TSEEECSSSSSEEEESSC
T ss_pred HHHHHHHHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC-CEEEecCCCCCCeeecCC
Confidence 3445677777532 34788999999999999999999999976 999987665556777643
No 225
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=74.76 E-value=3.9 Score=38.17 Aligned_cols=46 Identities=13% Similarity=0.195 Sum_probs=41.5
Q ss_pred HHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEe
Q psy10346 6 TEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVE 52 (292)
Q Consensus 6 e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e 52 (292)
+.+||..|..++.++-.++|+.+|++...|.+.+..|.+. |+|...
T Consensus 18 ~~~il~~l~~~~~~sr~~la~~~~ls~~tv~~~v~~L~~~-g~i~~~ 63 (406)
T 1z6r_A 18 AGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVHEMLEA-HLVQEL 63 (406)
T ss_dssp HHHHHHHHHSSCSCCHHHHHHHTTCCHHHHHHHHHHHHHH-TSEEEC
T ss_pred HHHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHC-CcEEee
Confidence 4679999988888999999999999999999999999987 998753
No 226
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=74.74 E-value=5.5 Score=32.71 Aligned_cols=52 Identities=12% Similarity=0.054 Sum_probs=40.2
Q ss_pred CChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeChhHHHHhhcCC
Q psy10346 19 VDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELTGEGNQVKDNGS 73 (292)
Q Consensus 19 ~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LTeEG~~yl~~Gl 73 (292)
++-.++|.-+|+.++.|.+.++.|+.. |+|+... .....+-.++.+-+.+|+
T Consensus 164 ~t~~~lA~~lg~sr~tvsR~l~~l~~~-g~I~~~~--~~i~i~d~~~L~~~a~~l 215 (216)
T 4ev0_A 164 IRHHELAALAGTSRETVSRVLHALAEE-GVVRLGP--GTVEVREAALLEEIAFGL 215 (216)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHT-TSEEEET--TEEEESCHHHHHHHHTTC
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHC-CCEEecC--CEEEEeCHHHHHHHhhcc
Confidence 466899999999999999999999986 9998754 345556666665554443
No 227
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=74.43 E-value=3.5 Score=35.71 Aligned_cols=38 Identities=8% Similarity=0.121 Sum_probs=32.3
Q ss_pred CCCCChH-HHHHhcCCCHHHHHHHHHHhhccCCcEEE--eee
Q psy10346 16 NPPVDTL-DLAKLFNEDHQKVVGGMKSIETLGEYLIV--EPL 54 (292)
Q Consensus 16 ~~~~~~~-ela~~~~~~~~~v~~~~~~L~s~~glv~~--e~~ 54 (292)
+..+.++ ++|+.+|++...|-.++..|++. |+|++ ...
T Consensus 25 G~~LpsE~~La~~lgVSRtpVREAL~~L~~~-GlV~~~~~~~ 65 (239)
T 2di3_A 25 GDHLPSERALSETLGVSRSSLREALRVLEAL-GTISTATGSG 65 (239)
T ss_dssp TCBCCCHHHHHHHHTCCHHHHHHHHHHHHHH-TSEECCSTTS
T ss_pred CCcCCCHHHHHHHHCCCHHHHHHHHHHHHHC-CCeEeecccC
Confidence 3346554 99999999999999999999997 99998 655
No 228
>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped structure, DNA binding domain, regulatory domain, DNA-binding; 2.70A {Mycobacterium tuberculosis}
Probab=74.08 E-value=1.9 Score=37.29 Aligned_cols=63 Identities=14% Similarity=-0.031 Sum_probs=46.8
Q ss_pred HHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeChhHHHHhhcC
Q psy10346 6 TEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELTGEGNQVKDNG 72 (292)
Q Consensus 6 e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LTeEG~~yl~~G 72 (292)
+.+++..+.+.+ +...-|+.+++++.+|.+.++.||..-|.-=.++. . .++||+.|+.++..-
T Consensus 10 ~L~~f~~v~~~g--s~s~AA~~L~isq~avS~~i~~LE~~lg~~Lf~R~-~-~~~lT~~G~~l~~~a 72 (303)
T 3isp_A 10 QLAALAAVVELG--SFDAAAERLHVTPSAVSQRIKSLEQQVGQVLVVRE-K-PCRATTAGIPLLRLA 72 (303)
T ss_dssp HHHHHHHHHHHT--CHHHHHTTTTCCHHHHHHHHHHHHHHHTSCCEECS-S-SCEECGGGHHHHHHH
T ss_pred HHHHHHHHHHcC--CHHHHHHHhCCChHHHHHHHHHHHHHhCCeeEEcC-C-CCeeCchHHHHHHHH
Confidence 344555554443 35677888999999999999999987665444554 5 899999999988544
No 229
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=73.67 E-value=3.2 Score=35.41 Aligned_cols=62 Identities=18% Similarity=0.158 Sum_probs=42.7
Q ss_pred HHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeChhHHHHhh
Q psy10346 6 TEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELTGEGNQVKD 70 (292)
Q Consensus 6 e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LTeEG~~yl~ 70 (292)
+.+++..+.+.+ +...-|+.+|+++.+|.+.++.||+.-|. ..-.+....+.||++|+.++.
T Consensus 5 ~l~~f~~v~~~g--s~s~AA~~L~isq~avS~~i~~LE~~lg~-~Lf~R~~~~~~lT~~G~~l~~ 66 (294)
T 1ixc_A 5 QLKYFIAVAEAG--NMAAAAKRLHVSQPPITRQMQALEADLGV-VLLERSHRGIELTAAGHAFLE 66 (294)
T ss_dssp HHHHHHHHHHHS--SHHHHHHHHTCCHHHHHHHHHHHHHHHTS-CCBC-----CCBCHHHHHHHH
T ss_pred HHHHHHHHHHcC--CHHHHHHHhCCCcchHHHHHHHHHHHHCC-EEEEeCCCCeeECHhHHHHHH
Confidence 344555554443 45677888999999999999999986454 334456778999999999873
No 230
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=73.47 E-value=4.9 Score=33.50 Aligned_cols=58 Identities=14% Similarity=0.059 Sum_probs=45.1
Q ss_pred HHHHHHHHhcc---CCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeCh
Q psy10346 5 LTEKILKYLDT---NPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELTG 63 (292)
Q Consensus 5 ~e~~iL~~L~~---~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LTe 63 (292)
...++|..|.. ++.+.+.++|+..|++..-|.+.+..|... |+|...+-..--|.|+.
T Consensus 28 yAlr~L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~a-Glv~s~rG~~GGy~Lar 88 (159)
T 3lwf_A 28 YGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNA-GIVKSIRGAHGGYVLNG 88 (159)
T ss_dssp HHHHHHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEECSTTCEEEECS
T ss_pred HHHHHHHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC-CeEEEecCCCCceEecC
Confidence 34456666643 345789999999999999999999999876 99998766656677663
No 231
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=72.62 E-value=2.2 Score=39.67 Aligned_cols=61 Identities=23% Similarity=0.294 Sum_probs=50.1
Q ss_pred HHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeChhHHHHhhcCC
Q psy10346 6 TEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELTGEGNQVKDNGS 73 (292)
Q Consensus 6 e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LTeEG~~yl~~Gl 73 (292)
-..+|..| . +..+..++|..+|++...|..+++.|.+. |+++... . |.||..|..++....
T Consensus 45 ~~~ll~~L-~-~~~t~~eLa~~~g~~~~~v~~~L~~l~~~-gll~~~~---~-~~lt~~~~~~l~~~~ 105 (373)
T 2qm3_A 45 VENVLSAV-L-ASDDIWRIVDLSEEPLPLVVAILESLNEL-GYVTFED---G-VKLTEKGEELVAEYG 105 (373)
T ss_dssp HHHHHHHH-H-HCSCHHHHHHHHTSCHHHHHHHHHHHHHT-TSEECSS---S-SEECHHHHHHHHHHT
T ss_pred HHHHHHHh-c-CCCCHHHHHHHhCCChHHHHHHHHHHhhC-CcEEECC---C-EEECHHHHHHHHhcC
Confidence 44678888 3 45788999999999999999999999886 9998754 2 999999998887643
No 232
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=71.58 E-value=6.9 Score=32.02 Aligned_cols=50 Identities=16% Similarity=0.064 Sum_probs=37.4
Q ss_pred CChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeChhHHHHhhc
Q psy10346 19 VDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELTGEGNQVKDN 71 (292)
Q Consensus 19 ~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LTeEG~~yl~~ 71 (292)
++-.++|.-+|+.++.|.+.++.|+.. |+|+... .....+-.++..-+..
T Consensus 147 ~t~~~lA~~lg~sr~tvsR~l~~L~~~-g~I~~~~--~~i~i~d~~~L~~~~~ 196 (202)
T 2zcw_A 147 ATHDELAAAVGSVRETVTKVIGELARE-GYIRSGY--GKIQLLDLKGLKELAE 196 (202)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEET--TEEEESCHHHHHHHHT
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHC-CCEEeCC--CEEEEeCHHHHHHHhc
Confidence 456899999999999999999999986 9998754 3344455555443333
No 233
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=71.49 E-value=1.7 Score=40.21 Aligned_cols=65 Identities=11% Similarity=0.048 Sum_probs=50.2
Q ss_pred HHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEE-EEeChhHHHHhhcCCh
Q psy10346 5 LTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKI-WELTGEGNQVKDNGSH 74 (292)
Q Consensus 5 ~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~-~~LTeEG~~yl~~GlP 74 (292)
.+..|...|. .+..+.++||+.+|++...+-+++..|.+. |+++... ... |.+|..++.. ..+.|
T Consensus 59 ~~lglf~~l~-~g~~t~~eLA~~~g~~~~~l~rlLr~L~~~-g~l~~~~--~~~~y~~t~~s~~L-~~~~~ 124 (369)
T 3gwz_A 59 VELGVPELLQ-EGPRTATALAEATGAHEQTLRRLLRLLATV-GVFDDLG--HDDLFAQNALSAVL-LPDPA 124 (369)
T ss_dssp HHHTTGGGGT-TSCEEHHHHHHHHTCCHHHHHHHHHHHHHT-TSSEECS--STTEEECCHHHHTT-SCCTT
T ss_pred HHCChhhhhc-CCCCCHHHHHHHHCcCHHHHHHHHHHHHhC-CCEEEeC--CCceEecCHHHHHH-hcCCc
Confidence 4445566665 456788999999999999999999999997 9987532 234 9999999985 45444
No 234
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=71.28 E-value=5.7 Score=31.47 Aligned_cols=57 Identities=12% Similarity=0.095 Sum_probs=43.7
Q ss_pred HHHHHHHHHhcc-CCCCChHHHHHhc-----CCCHHHHHHHHHHhhccCCcEEEeee--eEEEEEe
Q psy10346 4 DLTEKILKYLDT-NPPVDTLDLAKLF-----NEDHQKVVGGMKSIETLGEYLIVEPL--SHKIWEL 61 (292)
Q Consensus 4 ~~e~~iL~~L~~-~~~~~~~ela~~~-----~~~~~~v~~~~~~L~s~~glv~~e~~--~~~~~~L 61 (292)
.....||..|.. .+..+.+++...+ +++...|-+.+..|.+. |+|..... ....|.+
T Consensus 11 ~qR~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~-Glv~~~~~~~~~~~y~~ 75 (131)
T 2o03_A 11 RQRAAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASS-GLVDTLHTDTGESVYRR 75 (131)
T ss_dssp HHHHHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTT-TSEEEEECTTSCEEEEE
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHC-CCEEEEEeCCCceEEEe
Confidence 456779999964 3457788888776 89999999999999987 99976443 2455655
No 235
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=71.20 E-value=4.8 Score=37.99 Aligned_cols=47 Identities=13% Similarity=0.222 Sum_probs=41.5
Q ss_pred HHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEee
Q psy10346 6 TEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEP 53 (292)
Q Consensus 6 e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~ 53 (292)
+.+||..|..++.++..++|+.+|++...|.+.+..|.+. |+|....
T Consensus 41 ~~~il~~l~~~~~~sr~ela~~~gls~~tv~~~v~~L~~~-gli~~~~ 87 (429)
T 1z05_A 41 AGRVYKLIDQKGPISRIDLSKESELAPASITKITRELIDA-HLIHETT 87 (429)
T ss_dssp HHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEEC
T ss_pred HHHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHC-CCEEecc
Confidence 4569999988888888999999999999999999999987 9987643
No 236
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=71.06 E-value=8 Score=31.20 Aligned_cols=58 Identities=14% Similarity=0.148 Sum_probs=44.7
Q ss_pred HHHHHHHHHhcc-CCCCChHHHHHhc-----CCCHHHHHHHHHHhhccCCcEEEeee--eEEEEEeC
Q psy10346 4 DLTEKILKYLDT-NPPVDTLDLAKLF-----NEDHQKVVGGMKSIETLGEYLIVEPL--SHKIWELT 62 (292)
Q Consensus 4 ~~e~~iL~~L~~-~~~~~~~ela~~~-----~~~~~~v~~~~~~L~s~~glv~~e~~--~~~~~~LT 62 (292)
.....||..|.. .+..+.+++...+ +++...|-+.+..|.+. |+|..... ....|.+.
T Consensus 22 ~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~-Glv~~~~~~~~~~~Y~~~ 87 (145)
T 2fe3_A 22 PQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRES-GLVKELTYGDASSRFDFV 87 (145)
T ss_dssp HHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHT-TSEEEECCTTSCCEEEEC
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHC-CCEEEEeeCCCceEEECC
Confidence 456779999964 4567888998876 88999999999999987 99986543 24566664
No 237
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=71.01 E-value=5.1 Score=34.33 Aligned_cols=46 Identities=22% Similarity=0.262 Sum_probs=40.5
Q ss_pred cHHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcE
Q psy10346 3 SDLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYL 49 (292)
Q Consensus 3 ~~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv 49 (292)
+.-+..||..|..++.+..++||+.+|++.+.|-+.+..|... |+.
T Consensus 11 ~eR~~~i~~~l~~~~~~~~~~la~~~~vs~~TiRrDl~eL~~~-~l~ 56 (190)
T 4a0z_A 11 DKRREAIRQQIDSNPFITDHELSDLFQVSIQTIRLDRTYLNIP-ELR 56 (190)
T ss_dssp HHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHTCC-CHH
T ss_pred HHHHHHHHHHHHHCCCEeHHHHHHHHCCCHHHHHHHHHHhcCc-chh
Confidence 3467789999999999999999999999999999999999864 663
No 238
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=70.21 E-value=5.5 Score=35.63 Aligned_cols=71 Identities=14% Similarity=0.179 Sum_probs=50.1
Q ss_pred HHHHHHHHHhcc--CCCCChHHHHHhcCCCHHHHHHHHH-HhhccCCcEEEeeeeEEEEEeChhHHHHhhcCChHHHHH
Q psy10346 4 DLTEKILKYLDT--NPPVDTLDLAKLFNEDHQKVVGGMK-SIETLGEYLIVEPLSHKIWELTGEGNQVKDNGSHEVLVF 79 (292)
Q Consensus 4 ~~e~~iL~~L~~--~~~~~~~ela~~~~~~~~~v~~~~~-~L~s~~glv~~e~~~~~~~~LTeEG~~yl~~GlPE~rl~ 79 (292)
..+.+++..+.. ++.++..++|+.+|++...+.+.++ .|... |+|.... .-.+.|+.|.+|+..+ |+-.|+
T Consensus 263 ~~e~~~l~~l~~~~~~~~~~~~~a~~lg~~~~tl~~~l~~~l~~~-gli~~~~---~g~~~t~~~~~~~~~~-~~~~~~ 336 (338)
T 3pfi_A 263 AMDLRYLELLTAAKQKPIGLASIAAALSEDENTIEDVIEPYLLAN-GYIERTA---KGRIASAKSYSALKLN-YEKTLF 336 (338)
T ss_dssp HHHHHHHHHHHHSCSCCBCHHHHHHHTTCCHHHHHHTTHHHHHHT-TSEEEET---TEEEECHHHHHHHHHH-TC----
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHc-CceecCC---CcccccHHHHHHhccC-Ccchhc
Confidence 345666666643 3446688999999999999998888 77765 9987543 3468999999999755 334443
No 239
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=70.21 E-value=5.8 Score=30.67 Aligned_cols=37 Identities=5% Similarity=-0.071 Sum_probs=31.5
Q ss_pred ChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEE
Q psy10346 20 DTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHK 57 (292)
Q Consensus 20 ~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~ 57 (292)
+..++|+.+|++...|..++..|++. |+|......-.
T Consensus 35 s~~~La~~~~vSr~tvr~al~~L~~~-Gli~~~~~~G~ 71 (113)
T 3tqn_A 35 SIRKISTEYQINPLTVSKAYQSLLDD-NVIEKRRGLGM 71 (113)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEETTTEE
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHC-CCEEEecCCeE
Confidence 55799999999999999999999987 99887655443
No 240
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=69.73 E-value=4.8 Score=32.01 Aligned_cols=43 Identities=12% Similarity=0.117 Sum_probs=34.9
Q ss_pred CCCC-ChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEE
Q psy10346 16 NPPV-DTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIW 59 (292)
Q Consensus 16 ~~~~-~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~ 59 (292)
+..+ +-.++|..+|++...|..|+..|++. |+|......-.++
T Consensus 35 G~~LPser~La~~~gVSr~tVReAl~~L~~e-Glv~~~~g~G~~V 78 (134)
T 4ham_A 35 GEKILSIREFASRIGVNPNTVSKAYQELERQ-EVIITVKGKGTFI 78 (134)
T ss_dssp TCEECCHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEETTTEEEE
T ss_pred CCCCccHHHHHHHHCCCHHHHHHHHHHHHHC-CcEEEEcCcEEEE
Confidence 3334 34689999999999999999999987 9999877665554
No 241
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=69.14 E-value=3.4 Score=30.55 Aligned_cols=43 Identities=19% Similarity=0.205 Sum_probs=37.1
Q ss_pred HHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEE
Q psy10346 7 EKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLI 50 (292)
Q Consensus 7 ~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~ 50 (292)
.+.+.++..+..+..+++|..+|+..+.++.-++.|++. |.++
T Consensus 10 ~~Fi~yIk~~Kvv~LedLA~~F~l~t~~~i~RI~~Le~~-g~lt 52 (72)
T 1wi9_A 10 TEFINYIKKSKVVLLEDLAFQMGLRTQDAINRIQDLLTE-GTLT 52 (72)
T ss_dssp HHHHHHHHHCSEECHHHHHHHHCSCHHHHHHHHHHHHHH-SSSC
T ss_pred HHHHHHHHHcCeeeHHHHHHHhCCChHHHHHHHHHHHHC-CCeE
Confidence 456678887888889999999999999999999999987 6554
No 242
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=68.93 E-value=7.8 Score=30.85 Aligned_cols=59 Identities=20% Similarity=0.282 Sum_probs=45.3
Q ss_pred cHHHHHHHHHhccC--CCCChHHHHHhc-----CCCHHHHHHHHHHhhccCCcEEEeee--eEEEEEeC
Q psy10346 3 SDLTEKILKYLDTN--PPVDTLDLAKLF-----NEDHQKVVGGMKSIETLGEYLIVEPL--SHKIWELT 62 (292)
Q Consensus 3 ~~~e~~iL~~L~~~--~~~~~~ela~~~-----~~~~~~v~~~~~~L~s~~glv~~e~~--~~~~~~LT 62 (292)
......||..|... +..+.+++...+ +++...|-+.+..|.+. |+|..... ....|.++
T Consensus 17 T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~-Glv~~~~~~~~~~~Y~~~ 84 (136)
T 1mzb_A 17 TLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAA-GLVVRHNFDGGHAVFELA 84 (136)
T ss_dssp CHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH-TSEEEECSSSSSCEEEES
T ss_pred CHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHC-CcEEEEEeCCCceEEEeC
Confidence 35667899999653 467888888776 89999999999999987 99986443 33567664
No 243
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=68.77 E-value=5.5 Score=33.89 Aligned_cols=54 Identities=11% Similarity=0.007 Sum_probs=42.3
Q ss_pred CChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeChhHHHHhhcCChH
Q psy10346 19 VDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELTGEGNQVKDNGSHE 75 (292)
Q Consensus 19 ~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LTeEG~~yl~~GlPE 75 (292)
++-.++|.-+|+..+.|.+.++.|+.. |+|+.... ....+-.++.+-+.++.|.
T Consensus 178 ~t~~~iA~~lG~sr~tvsR~l~~L~~~-g~I~~~~~--~i~i~d~~~L~~~a~~~~~ 231 (250)
T 3e6c_C 178 LSQKSIGEITGVHHVTVSRVLASLKRE-NILDKKKN--KIIVYNLGELKHLSEQTSY 231 (250)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEECSS--EEEESCHHHHHHHHTSSCC
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHC-CCeEeCCC--EEEEecHHHHHHHHccCcc
Confidence 566899999999999999999999986 99998664 4556666666655555553
No 244
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=67.92 E-value=18 Score=24.24 Aligned_cols=41 Identities=17% Similarity=0.245 Sum_probs=32.5
Q ss_pred HHHHHhccCCCCChHHHHHhc-----CCCHHHHHHHHHHhhccCCcEEEe
Q psy10346 8 KILKYLDTNPPVDTLDLAKLF-----NEDHQKVVGGMKSIETLGEYLIVE 52 (292)
Q Consensus 8 ~iL~~L~~~~~~~~~ela~~~-----~~~~~~v~~~~~~L~s~~glv~~e 52 (292)
.|+..|..++.++..++++.+ +++...|-+.+..| |++++.
T Consensus 9 ~i~~ll~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~l----g~v~~~ 54 (64)
T 2p5k_A 9 KIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIKEL----HLVKVP 54 (64)
T ss_dssp HHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHH----TCEEEE
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHc----CCEEEe
Confidence 355666667778999999999 99999999999944 566554
No 245
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=66.08 E-value=6.2 Score=31.23 Aligned_cols=39 Identities=13% Similarity=0.045 Sum_probs=33.4
Q ss_pred ChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEE
Q psy10346 20 DTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIW 59 (292)
Q Consensus 20 ~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~ 59 (292)
+..++|..+|++...|..++..|++. |+|......-.++
T Consensus 37 se~~La~~~~vSr~tvr~Al~~L~~~-Gli~~~~g~G~~V 75 (126)
T 3by6_A 37 SVRETALQEKINPNTVAKAYKELEAQ-KVIRTIPGKGTFI 75 (126)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEETTTEEEE
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHC-CCEEEecCCeEEE
Confidence 56899999999999999999999987 9998876655444
No 246
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=65.93 E-value=3 Score=34.71 Aligned_cols=60 Identities=15% Similarity=0.149 Sum_probs=46.6
Q ss_pred HHHHHHHHhcc--CCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeChhH
Q psy10346 5 LTEKILKYLDT--NPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELTGEG 65 (292)
Q Consensus 5 ~e~~iL~~L~~--~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LTeEG 65 (292)
...++|..|.. +..+.+.++|+..|+++..|.+.+..|... |||...+-..--|.|+..-
T Consensus 13 yAlr~l~~La~~~~~~~s~~~IA~~~~is~~~l~kil~~L~~a-Glv~s~rG~~GGy~Lar~p 74 (162)
T 3k69_A 13 VAVHSILYLDAHRDSKVASRELAQSLHLNPVMIRNILSVLHKH-GYLTGTVGKNGGYQLDLAL 74 (162)
T ss_dssp HHHHHHHHHHTTTTSCBCHHHHHHHHTSCGGGTHHHHHHHHHT-TSSEEECSTTCEEECCSCG
T ss_pred HHHHHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC-CCEEeecCCCCCeEecCCh
Confidence 34467777753 345788999999999999999999999976 9998776665567777543
No 247
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=65.40 E-value=5.7 Score=35.17 Aligned_cols=56 Identities=11% Similarity=0.062 Sum_probs=41.4
Q ss_pred HHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeChhH
Q psy10346 6 TEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELTGEG 65 (292)
Q Consensus 6 e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LTeEG 65 (292)
...|+..|. ++..+..++|..+|++.+.|...+..|... |+|+ .+....+.+.+|-
T Consensus 167 ~~~l~~~l~-~~~~t~~~la~~~~l~~~~V~~~l~~L~~~-~~v~--~~~~~~~~~~~~~ 222 (232)
T 2qlz_A 167 LAILHYLLL-NGRATVEELSDRLNLKEREVREKISEMARF-VPVK--IINDNTVVLDEDQ 222 (232)
T ss_dssp HHHHHHHHH-SSEEEHHHHHHHHTCCHHHHHHHHHHHTTT-SCEE--EETTTEEEECHHH
T ss_pred HHHHHHHHh-cCCCCHHHHHHHhCcCHHHHHHHHHHHHhc-CCeE--EecCCeEEecHHH
Confidence 344555554 566788999999999999999999999976 9987 4444445555543
No 248
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=64.72 E-value=7.8 Score=33.77 Aligned_cols=44 Identities=20% Similarity=0.307 Sum_probs=35.9
Q ss_pred ccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEE
Q psy10346 14 DTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKI 58 (292)
Q Consensus 14 ~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~ 58 (292)
..+..+.-.++|+.+|++...|-.++..|++. |+|+.....-..
T Consensus 45 ~pG~~L~e~~La~~lgVSr~~VReAL~~L~~~-Glv~~~~~~G~~ 88 (237)
T 3c7j_A 45 PSGTALRQQELATLFGVSRMPVREALRQLEAQ-SLLRVETHKGAV 88 (237)
T ss_dssp CTTCBCCHHHHHHHHTSCHHHHHHHHHHHHHT-TSEEEETTTEEE
T ss_pred CCcCeeCHHHHHHHHCCCHHHHHHHHHHHHHC-CCEEEeCCCceE
Confidence 33555777899999999999999999999987 999987554433
No 249
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=64.23 E-value=8.8 Score=31.27 Aligned_cols=35 Identities=9% Similarity=0.142 Sum_probs=31.0
Q ss_pred CChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeee
Q psy10346 19 VDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPL 54 (292)
Q Consensus 19 ~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~ 54 (292)
++-.++|.-+|+..+.|.+.++.|+.. |+|++...
T Consensus 168 ~t~~~iA~~lg~sr~tvsR~l~~L~~~-g~I~~~~~ 202 (210)
T 3ryp_A 168 ITRQEIGQIVGCSRETVGRILKMLEDQ-NLISAHGK 202 (210)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEETT
T ss_pred cCHHHHHHHhCCcHHHHHHHHHHHHHC-CcEEeCCC
Confidence 456899999999999999999999986 99998654
No 250
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=63.73 E-value=13 Score=32.62 Aligned_cols=72 Identities=17% Similarity=0.055 Sum_probs=49.8
Q ss_pred HHHHHHHHHhc-c--CCCCChHHHHHhcCCCHHHHHHHHHH-hhccCCcEEEeeeeEEEEEeChhHHHHhhcCChHHHHH
Q psy10346 4 DLTEKILKYLD-T--NPPVDTLDLAKLFNEDHQKVVGGMKS-IETLGEYLIVEPLSHKIWELTGEGNQVKDNGSHEVLVF 79 (292)
Q Consensus 4 ~~e~~iL~~L~-~--~~~~~~~ela~~~~~~~~~v~~~~~~-L~s~~glv~~e~~~~~~~~LTeEG~~yl~~GlPE~rl~ 79 (292)
..++.++..+. . ++......+|..+|+++..+.+.++. +... |+|.... .-..+|+-|.+|+...+|.+-|+
T Consensus 247 ~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~~~i~~-~li~~~~---~g~~~~~~~~~~~~~~~~~~~~~ 322 (324)
T 1hqc_A 247 KRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQ-GLLKRTP---RGRVPTELAYRHLGYPPPVGPLL 322 (324)
T ss_dssp HHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHHHHHHT-TSEEEET---TEEEECHHHHHHTTCCCCC----
T ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHh-cchhcCC---ccceecHHHHHHHhcCCCCCCCC
Confidence 34556665543 2 44566789999999999999998877 5544 9997433 45799999999996566665543
No 251
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=63.60 E-value=12 Score=30.39 Aligned_cols=58 Identities=14% Similarity=0.201 Sum_probs=44.2
Q ss_pred HHHHHHHHHhcc-CCCCChHHHHHhc-----CCCHHHHHHHHHHhhccCCcEEEeee--eEEEEEeC
Q psy10346 4 DLTEKILKYLDT-NPPVDTLDLAKLF-----NEDHQKVVGGMKSIETLGEYLIVEPL--SHKIWELT 62 (292)
Q Consensus 4 ~~e~~iL~~L~~-~~~~~~~ela~~~-----~~~~~~v~~~~~~L~s~~glv~~e~~--~~~~~~LT 62 (292)
.....||..|.. .+..+.+++...+ +++...|-+.+..|... |+|..-.. ....|.+.
T Consensus 27 ~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~-Glv~~~~~~~~~~~Y~~~ 92 (150)
T 2xig_A 27 KQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKE-NFISVLETSKSGRRYEIA 92 (150)
T ss_dssp HHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHT-TSEEEEEETTTEEEEEES
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHC-CcEEEEEeCCCceEEEec
Confidence 456679999964 3557888887766 78999999999999987 99976443 34567664
No 252
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=63.29 E-value=12 Score=30.93 Aligned_cols=45 Identities=11% Similarity=0.046 Sum_probs=35.4
Q ss_pred CChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEe-eeeEEEEEeChhHH
Q psy10346 19 VDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVE-PLSHKIWELTGEGN 66 (292)
Q Consensus 19 ~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e-~~~~~~~~LTeEG~ 66 (292)
++-.++|.-+|++.+.|.+.++.|+.. |+|+.. .. ....+-.++.
T Consensus 168 ~t~~~lA~~lg~sr~tvsR~l~~l~~~-g~I~~~~~~--~i~i~d~~~L 213 (220)
T 2fmy_A 168 LNTEEIALMLGTTRQTVSVLLNDFKKM-GILERVNQR--TLLLKDLQKL 213 (220)
T ss_dssp SCHHHHHHHHTSCHHHHHHHHHHHHHT-TSEEESSSS--EEEESCHHHH
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHC-CCEEEcCCC--EEEEcCHHHH
Confidence 566899999999999999999999986 999986 54 3444444443
No 253
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=62.97 E-value=14 Score=33.37 Aligned_cols=40 Identities=8% Similarity=0.004 Sum_probs=33.9
Q ss_pred hccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEee
Q psy10346 13 LDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEP 53 (292)
Q Consensus 13 L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~ 53 (292)
|...+.+...++|+.+|++...|-+.+..|+.. |+|++.-
T Consensus 16 l~~~~~~~~~ela~~l~vS~~tIrRdL~~l~~~-G~v~iri 55 (315)
T 2w48_A 16 LYYEQDMTQAQIARELGIYRTTISRLLKRGREQ-GIVTIAI 55 (315)
T ss_dssp HHHTSCCCHHHHHHHTTCCHHHHHHHHHHHHHT-TSEEEEE
T ss_pred HHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC-CcEEEEe
Confidence 334556889999999999999999999999987 9997544
No 254
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=62.28 E-value=10 Score=31.57 Aligned_cols=45 Identities=20% Similarity=0.167 Sum_probs=35.5
Q ss_pred CChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeChhHH
Q psy10346 19 VDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELTGEGN 66 (292)
Q Consensus 19 ~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LTeEG~ 66 (292)
++-.++|.-+|+.++.|.+.++.|+.. |+|++... ....+..++.
T Consensus 176 ~t~~~iA~~lg~sr~tvsR~l~~L~~~-g~I~~~~~--~i~i~d~~~L 220 (231)
T 3e97_A 176 LGTQDIMARTSSSRETVSRVLKRLEAH-NILEVSPR--SVTLLDLAAL 220 (231)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEECSS--CEEESCHHHH
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHC-CcEEecCC--EEEEeCHHHH
Confidence 466899999999999999999999986 99998653 3444444443
No 255
>2l02_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=61.85 E-value=3.7 Score=31.13 Aligned_cols=44 Identities=14% Similarity=0.257 Sum_probs=34.0
Q ss_pred HHHhhcCCC-CCChHHHhhc--C--CchhhHHHHHHHcCCeecccCcce
Q psy10346 77 LVFNNVPSE-GIGQKELLAT--F--PNAKVGFSKAMAKGWISLDKATGK 120 (292)
Q Consensus 77 rl~~~l~~~-~~~~~el~~~--~--~~~~ig~~~a~k~gwi~i~~~~g~ 120 (292)
+|+++|.+. ..++.+|.+. + .+...|+||+.|.+-|.++..++.
T Consensus 12 ~VW~~L~~~~~~s~~el~k~t~l~d~el~lAIGWLaREdKI~~~~~~~~ 60 (82)
T 2l02_A 12 KVWHALNEADGISIPELARKVNLSVESTALAVGWLARENKVVIERKNGL 60 (82)
T ss_dssp HHHHHHHHCCSBCHHHHHHHHTCCHHHHHHHHHHHHTTTSEEEEEETTE
T ss_pred HHHHHHhccCCCCHHHHHHHhCCCHHHHHHHHHHHhccCceeEEeeCCE
Confidence 578888765 4899999876 3 256789999999999988766553
No 256
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=61.78 E-value=10 Score=31.37 Aligned_cols=35 Identities=17% Similarity=0.138 Sum_probs=31.1
Q ss_pred CChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeee
Q psy10346 19 VDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPL 54 (292)
Q Consensus 19 ~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~ 54 (292)
++-.++|.-+|+.++.|.+.++.|+.. |+|+....
T Consensus 188 lt~~~lA~~lg~sr~tvsR~l~~L~~~-g~I~~~~~ 222 (230)
T 3iwz_A 188 VSRQELARLVGCSREMAGRVLKKLQAD-GLLHARGK 222 (230)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEETT
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHC-CCEEECCC
Confidence 456899999999999999999999986 99998654
No 257
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=61.77 E-value=10 Score=30.78 Aligned_cols=35 Identities=14% Similarity=0.193 Sum_probs=30.7
Q ss_pred CChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeee
Q psy10346 19 VDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPL 54 (292)
Q Consensus 19 ~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~ 54 (292)
++-.++|.-+|++++.|.+.++.|+.. |+|+....
T Consensus 165 ~t~~~lA~~lg~sr~tvsR~l~~l~~~-g~I~~~~~ 199 (207)
T 2oz6_A 165 ITRQEIGRIVGCSREMVGRVLKSLEEQ-GLVHVKGK 199 (207)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHT-TSEEEETT
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHC-CCEEecCC
Confidence 455899999999999999999999986 99987653
No 258
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=61.44 E-value=9.1 Score=35.46 Aligned_cols=57 Identities=19% Similarity=0.176 Sum_probs=46.1
Q ss_pred HHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeee-------eEEEEEeChhH
Q psy10346 7 EKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPL-------SHKIWELTGEG 65 (292)
Q Consensus 7 ~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~-------~~~~~~LTeEG 65 (292)
.+||..|. ++.++-.++|+.+|++...|.+.+..|.+. |+|..... ....|.+.+++
T Consensus 23 ~~il~~l~-~~~~sr~~la~~~gls~~tv~~~v~~L~~~-gli~~~~~~~~~~GR~~~~l~~~~~~ 86 (380)
T 2hoe_A 23 SRILKRIM-KSPVSRVELAEELGLTKTTVGEIAKIFLEK-GIVVEEKDSPKGVGRPTKSLKISPNC 86 (380)
T ss_dssp CCSHHHHH-HSCBCHHHHHHHHTCCHHHHHHHHHHHHHH-TSEEEEECCC----CCCEEEEECGGG
T ss_pred HHHHHHHH-cCCcCHHHHHHHHCcCHHHHHHHHHHHHHC-CCEEeecCCCCCCCCCceEEEEccCC
Confidence 45899998 888899999999999999999999999987 99876432 34455666554
No 259
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=61.13 E-value=9.5 Score=30.84 Aligned_cols=58 Identities=16% Similarity=0.142 Sum_probs=42.9
Q ss_pred HHHHHHHHHhccCCCCChHHHHHhc-----CCCHHHHHHHHHHhhccCCcEEEeee--eEEEEEeC
Q psy10346 4 DLTEKILKYLDTNPPVDTLDLAKLF-----NEDHQKVVGGMKSIETLGEYLIVEPL--SHKIWELT 62 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~~~~ela~~~-----~~~~~~v~~~~~~L~s~~glv~~e~~--~~~~~~LT 62 (292)
.....||..|...+..+.+++...+ +++...|-+.+..|... |+|.--.. ....|.+.
T Consensus 19 ~qR~~Il~~l~~~~h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~-Glv~~i~~~~~~~~Y~~~ 83 (145)
T 3eyy_A 19 PQRQLVLEAVDTLEHATPDDILGEVRKTASGINISTVYRTLELLEEL-GLVSHAHLGHGAPTYHLA 83 (145)
T ss_dssp HHHHHHHHHHHHHSSBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHH-TSEEEEECGGGCEEEEET
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHC-CcEEEEEeCCCceEEEeC
Confidence 5667799988654467788876654 68899999999999987 99875432 23456654
No 260
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=60.99 E-value=13 Score=32.55 Aligned_cols=53 Identities=9% Similarity=0.109 Sum_probs=41.3
Q ss_pred HHHHHHHHHhccCCCC-ChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEE
Q psy10346 4 DLTEKILKYLDTNPPV-DTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIW 59 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~-~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~ 59 (292)
.+..+|.. +..+..+ +-.+||+.+|++...|-+++..|++. |+|.. ...-+++
T Consensus 22 ~l~~~I~~-~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~-G~i~~-~g~Gt~V 75 (248)
T 3f8m_A 22 ELDRMLDG-MRIGDPFPAEREIAEQFEVARETVRQALRELLID-GRVER-RGRTTVV 75 (248)
T ss_dssp HHHHHHHH-CCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHT-TSEEE-ETTEEEE
T ss_pred HHHHHHhC-CCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHC-CCEEe-CCCEEEE
Confidence 45566665 6656566 55899999999999999999999987 99998 5554444
No 261
>2l01_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=60.83 E-value=6.6 Score=29.40 Aligned_cols=44 Identities=9% Similarity=0.241 Sum_probs=34.2
Q ss_pred HHHhhcCCCC-CChHHHhhc--C-C--chhhHHHHHHHcCCeecccCcce
Q psy10346 77 LVFNNVPSEG-IGQKELLAT--F-P--NAKVGFSKAMAKGWISLDKATGK 120 (292)
Q Consensus 77 rl~~~l~~~~-~~~~el~~~--~-~--~~~ig~~~a~k~gwi~i~~~~g~ 120 (292)
+|+++|.+.+ .++.+|.+. + . +...|+||+.|.+=|.+...++.
T Consensus 14 ~VW~~L~~~~~~s~~el~k~t~l~~d~el~lAiGWLaREdKI~~~~~~~~ 63 (77)
T 2l01_A 14 QIWEALNGTEGLTQKQIKKATKLKADKDFFLGLGWLLREDKVVTSEVEGE 63 (77)
T ss_dssp HHHHHHTTSSCEEHHHHHHHHTCSCHHHHHHHHHHHHHTTCEEEEEETTE
T ss_pred HHHHHHhcCCCCCHHHHHHHHCCCCHHHHHHHHHHHhhcCceEEEeeCCE
Confidence 5888898754 799999875 4 3 45689999999999998776553
No 262
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=60.50 E-value=1.8 Score=37.91 Aligned_cols=62 Identities=8% Similarity=-0.023 Sum_probs=0.0
Q ss_pred HHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeChhHHHHhhcC
Q psy10346 8 KILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELTGEGNQVKDNG 72 (292)
Q Consensus 8 ~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LTeEG~~yl~~G 72 (292)
+++..+.+.+. ...-|+.+++++.+|.+.++.||..-|. ..-.+....++||++|+.++...
T Consensus 7 ~~F~~va~~gs--~s~AA~~L~isq~avS~~I~~LE~~lg~-~Lf~R~~r~~~lT~~G~~l~~~a 68 (312)
T 2h9b_A 7 RYFVAVVEEQS--FTKAADKLCIAQPPLSRQIQNLEEELGI-QLLERGSRPVKTTPEGHFFYQYA 68 (312)
T ss_dssp -----------------------------------------------------------------
T ss_pred HHHHHHHHhCC--HHHHHHHhcCCccHHHHHHHHHHHHhCC-EeEeeCCCCceECHHHHHHHHHH
Confidence 34444444442 3456788999999999999999976443 44556677899999999987544
No 263
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=60.20 E-value=11 Score=30.91 Aligned_cols=35 Identities=3% Similarity=0.090 Sum_probs=30.9
Q ss_pred CCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEee
Q psy10346 18 PVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEP 53 (292)
Q Consensus 18 ~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~ 53 (292)
.++-.++|.-+|++++.|.+.++.|+.. |+|+...
T Consensus 169 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~-g~I~~~~ 203 (220)
T 3dv8_A 169 KITHETIANHLGSHREVITRMLRYFQVE-GLVKLSR 203 (220)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEET
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHC-CCEEeCC
Confidence 3567999999999999999999999986 9998754
No 264
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=60.12 E-value=13 Score=29.26 Aligned_cols=41 Identities=7% Similarity=0.077 Sum_probs=34.5
Q ss_pred ChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEe
Q psy10346 20 DTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWEL 61 (292)
Q Consensus 20 ~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~L 61 (292)
+..++|..+|++...|..++..|++. |+|......-.++.-
T Consensus 39 s~~~La~~~~vSr~tvr~Al~~L~~~-G~i~~~~g~G~~V~~ 79 (125)
T 3neu_A 39 SVREMGVKLAVNPNTVSRAYQELERA-GYIYAKRGMGSFVTS 79 (125)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEETTTEEEECC
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHC-CeEEEecCCEEEEec
Confidence 35799999999999999999999987 999987766555543
No 265
>3kfw_X Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.50A {Mycobacterium tuberculosis}
Probab=59.56 E-value=8.3 Score=34.53 Aligned_cols=67 Identities=9% Similarity=0.051 Sum_probs=49.8
Q ss_pred HHHHHHh-cc-CCCCCh---HHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeChhHHHHhhcCChHHHHH
Q psy10346 7 EKILKYL-DT-NPPVDT---LDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELTGEGNQVKDNGSHEVLVF 79 (292)
Q Consensus 7 ~~iL~~L-~~-~~~~~~---~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LTeEG~~yl~~GlPE~rl~ 79 (292)
.-|++.| .. ++.+.+ ..+...+|++...|--++..|.+. |.++.++.- |.||+.|++....| +.+++
T Consensus 7 SlIlsll~g~~g~~i~~~~Li~l~~~~Gi~e~avRtAlsRL~~~-G~L~~~~~G---Y~LT~~~~~~~~~~--~~rI~ 78 (247)
T 3kfw_X 7 SVVLSVLLGAHPAWATASELIQLTADFGIKETTLRVALTRMVGA-GDLVRSADG---YRLSDRLLARQRRQ--DEAMR 78 (247)
T ss_dssp HHHHHHHTTTTTSCBCHHHHHHHHTTTTCCHHHHHHHHHHHHHT-TSEEEETTE---EEECHHHHHHHHHH--HHHHS
T ss_pred eeeEeeecCCCCCcccHHHHHHHHHHcCCChHHHHHHHHHHHHc-CCeeccCCc---eeeCHHHHHHHHHH--HHHhc
Confidence 3466655 32 344554 455667899999999999999976 999886654 99999999877766 45565
No 266
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=59.30 E-value=12 Score=30.47 Aligned_cols=58 Identities=16% Similarity=0.176 Sum_probs=44.3
Q ss_pred HHHHHHHHHhccC--CCCChHHHHHhc-----CCCHHHHHHHHHHhhccCCcEEEeee--eEEEEEeC
Q psy10346 4 DLTEKILKYLDTN--PPVDTLDLAKLF-----NEDHQKVVGGMKSIETLGEYLIVEPL--SHKIWELT 62 (292)
Q Consensus 4 ~~e~~iL~~L~~~--~~~~~~ela~~~-----~~~~~~v~~~~~~L~s~~glv~~e~~--~~~~~~LT 62 (292)
.....||..|... +..+.+++...+ +++...|-+.+..|... |+|..... ....|.++
T Consensus 17 ~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~-Glv~~~~~~~~~~~Y~~~ 83 (150)
T 2w57_A 17 LPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDA-GIVTRHHFEGGKSVFELS 83 (150)
T ss_dssp HHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT-TSEEEEECGGGCEEEEEC
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHC-CcEEEEEeCCCceEEEec
Confidence 5567799999653 457778887765 78999999999999987 99986543 34567764
No 267
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=57.99 E-value=13 Score=30.87 Aligned_cols=44 Identities=14% Similarity=0.139 Sum_probs=34.7
Q ss_pred CChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeChhH
Q psy10346 19 VDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELTGEG 65 (292)
Q Consensus 19 ~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LTeEG 65 (292)
++-.++|.-+|++++.|.+.++.|+.. |+|+..... ...+-.++
T Consensus 181 ~t~~~lA~~lg~sr~tvsR~l~~l~~~-g~I~~~~~~--i~i~d~~~ 224 (232)
T 2gau_A 181 LSREELATLSNMTVSNAIRTLSTFVSE-RMLALDGKR--IKIIDCDR 224 (232)
T ss_dssp CCHHHHHHHTTSCHHHHHHHHHHHHHT-TSEEEETTE--EEESCHHH
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHC-CCEeeCCCE--EEEeCHHH
Confidence 466899999999999999999999986 999887542 33444444
No 268
>3mz1_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative, MI center for STR uctural genomics, MCSG; 1.88A {Sinorhizobium meliloti}
Probab=57.96 E-value=2.1 Score=36.31 Aligned_cols=62 Identities=8% Similarity=-0.009 Sum_probs=0.0
Q ss_pred HHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeChhHHHHhhcC
Q psy10346 8 KILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELTGEGNQVKDNG 72 (292)
Q Consensus 8 ~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LTeEG~~yl~~G 72 (292)
+++..+.+.+. ...-|+.+++++.+|.+.++.||..-| +..-.+....++||+.|+.++..-
T Consensus 4 ~~f~~v~~~~s--~s~AA~~L~isq~avS~~i~~LE~~lg-~~Lf~R~~~~~~lT~~G~~l~~~a 65 (300)
T 3mz1_A 4 RAFLRVVETGN--FTRASASLNMPKATVTNLIQGLEAHLR-TKLLNRTTRRVLVTPDGALYYERA 65 (300)
T ss_dssp -----------------------------------------------------------------
T ss_pred HHHHHHHhcCC--HHHHHHHhCCCHHHHHHHHHHHHHHhC-CeeEecCCCceeeCHhHHHHHHHH
Confidence 34444444432 345677899999999999999997644 345566678899999999877443
No 269
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=57.12 E-value=2.2 Score=37.45 Aligned_cols=50 Identities=12% Similarity=-0.039 Sum_probs=0.0
Q ss_pred hHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeChhHHHHhhc
Q psy10346 21 TLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELTGEGNQVKDN 71 (292)
Q Consensus 21 ~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LTeEG~~yl~~ 71 (292)
...-|+.+++++.+|.+.++.||+.-|. ..-.+....++||+.|+.++..
T Consensus 31 ~t~AA~~L~isq~avS~~I~~LE~~lg~-~Lf~R~~r~~~lT~~G~~l~~~ 80 (315)
T 1uth_A 31 VSTAGEKLGLTQPAVSNSLKRLRTALND-DLFLRTSKGMEPTPYALHLAEP 80 (315)
T ss_dssp ---------------------------------------------------
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhCC-cceeecCCCccCCHHHHHHHHH
Confidence 3556788999999999999999976443 4455667789999999998754
No 270
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=56.89 E-value=12 Score=29.95 Aligned_cols=59 Identities=8% Similarity=0.039 Sum_probs=43.9
Q ss_pred HHHHHHHHHhccC-CCCChHHHHHhc-----CCCHHHHHHHHHHhhccCCcEEEeee--eEEEEEeCh
Q psy10346 4 DLTEKILKYLDTN-PPVDTLDLAKLF-----NEDHQKVVGGMKSIETLGEYLIVEPL--SHKIWELTG 63 (292)
Q Consensus 4 ~~e~~iL~~L~~~-~~~~~~ela~~~-----~~~~~~v~~~~~~L~s~~glv~~e~~--~~~~~~LTe 63 (292)
.....||..|... +..+.+++...+ +++...|-+.+..|.+. |+|.-... ....|.+..
T Consensus 14 ~qR~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~-Glv~~~~~~~g~~~Y~~~~ 80 (139)
T 3mwm_A 14 RQRAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADA-GEVDVLRTAEGESVYRRCS 80 (139)
T ss_dssp HHHHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT-TSSEEEECTTSCEEEECCS
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHC-CCEEEEEcCCCceEEEECC
Confidence 4567799999653 456778887665 78999999999999987 99875443 245677653
No 271
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=56.88 E-value=22 Score=21.69 Aligned_cols=37 Identities=5% Similarity=-0.024 Sum_probs=28.0
Q ss_pred HHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhcc
Q psy10346 7 EKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETL 45 (292)
Q Consensus 7 ~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~ 45 (292)
..|+..+.. + ....++|..+|++...|-++++..+..
T Consensus 12 ~~i~~~~~~-g-~s~~~IA~~lgis~~Tv~~~~~~~~~~ 48 (51)
T 1tc3_C 12 AQLDVMKLL-N-VSLHEMSRKISRSRHCIRVYLKDPVSY 48 (51)
T ss_dssp HHHHHHHHT-T-CCHHHHHHHHTCCHHHHHHHHHCSTTT
T ss_pred HHHHHHHHc-C-CCHHHHHHHHCcCHHHHHHHHhhHHhc
Confidence 356655543 3 467899999999999999999877653
No 272
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=56.48 E-value=2.3 Score=37.54 Aligned_cols=62 Identities=6% Similarity=-0.031 Sum_probs=0.0
Q ss_pred HHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeChhHHHHhhcC
Q psy10346 8 KILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELTGEGNQVKDNG 72 (292)
Q Consensus 8 ~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LTeEG~~yl~~G 72 (292)
+++.++.+.+. ...-|+.+++++.+|.+.++.||..=|. ..-.+....+.||++|+.++..-
T Consensus 7 ~~F~~vae~gS--~s~AA~~L~isq~avS~~I~~LE~~lG~-~Lf~R~~r~v~lT~~G~~l~~~a 68 (313)
T 2h98_A 7 RYFVTVVEEQS--ISKAAEKLCIAQPPLSRQIQKLEEELGI-QLFERGFRPAKVTEAGMFFYQHA 68 (313)
T ss_dssp -----------------------------------------------------------------
T ss_pred HHHHHHHHhCC--HHHHHHHhCCCccHHHHHHHHHHHHhCC-eeEEcCCCCeEECHhHHHHHHHH
Confidence 34444444442 3556888999999999999999976443 44556677899999999987543
No 273
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=56.26 E-value=13 Score=31.39 Aligned_cols=35 Identities=6% Similarity=0.098 Sum_probs=30.9
Q ss_pred CChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeee
Q psy10346 19 VDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPL 54 (292)
Q Consensus 19 ~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~ 54 (292)
++-.++|.-+|+..+.|.++++.|+.. |+|.....
T Consensus 194 lt~~~lA~~lG~sr~tvsR~l~~L~~~-GlI~~~~~ 228 (243)
T 3la7_A 194 LSHQAIAEAIGSTRVTVTRLLGDLREK-KMISIHKK 228 (243)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEETT
T ss_pred CCHHHHHHHHCCcHHHHHHHHHHHHHC-CCEEEcCC
Confidence 456899999999999999999999986 99997643
No 274
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=55.66 E-value=12 Score=30.90 Aligned_cols=35 Identities=9% Similarity=-0.017 Sum_probs=30.8
Q ss_pred CChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeee
Q psy10346 19 VDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPL 54 (292)
Q Consensus 19 ~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~ 54 (292)
++-.++|.-+|+..+.|.+.++.|+.. |+|.....
T Consensus 179 ~t~~~lA~~lg~sr~tvsR~l~~l~~~-g~I~~~~~ 213 (227)
T 3dkw_A 179 VAKQLVAGHLSIQPETFSRIMHRLGDE-GIIHLDGR 213 (227)
T ss_dssp SCTHHHHHHTTSCHHHHHHHHHHHHHH-TSEEESSS
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHC-CcEEecCC
Confidence 355899999999999999999999987 99988653
No 275
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=54.90 E-value=15 Score=30.42 Aligned_cols=34 Identities=12% Similarity=0.250 Sum_probs=30.5
Q ss_pred CChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEee
Q psy10346 19 VDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEP 53 (292)
Q Consensus 19 ~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~ 53 (292)
++-.++|.-+|++.+.|.+.++.|+.. |+|+...
T Consensus 178 ~t~~~lA~~lg~sr~tvsR~l~~l~~~-g~I~~~~ 211 (227)
T 3d0s_A 178 LTQEEIAQLVGASRETVNKALADFAHR-GWIRLEG 211 (227)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHT-TSEEEET
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHC-CCEEecC
Confidence 566899999999999999999999986 9998865
No 276
>1b9m_A Protein (mode); DNA-binding, gene regulation, winged helix turn helix, molybdate, OB fold, transcription; 1.75A {Escherichia coli} SCOP: a.4.5.8 b.40.6.2 b.40.6.2 PDB: 1b9n_A 1o7l_A 1h9s_A 1h9r_A 1h9s_B
Probab=52.97 E-value=16 Score=31.68 Aligned_cols=63 Identities=16% Similarity=0.047 Sum_probs=45.1
Q ss_pred HHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeE-----EEEEeChhHHHHhh
Q psy10346 5 LTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSH-----KIWELTGEGNQVKD 70 (292)
Q Consensus 5 ~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~-----~~~~LTeEG~~yl~ 70 (292)
.+.+++..+...+ +...-|+.+|+++.++.+.++.|+..-|. ..-.+.. ....||+.|+.++.
T Consensus 23 ~~l~~f~~v~~~g--s~~~aa~~l~~s~~~~s~~i~~le~~lg~-~L~~R~~~~lsg~~~~lt~~g~~l~~ 90 (265)
T 1b9m_A 23 RRISLLKHIALSG--SISQGAKDAGISYKSAWDAINEMNQLSEH-ILVERATGGKGGGGAVLTRYGQRLIQ 90 (265)
T ss_dssp HHHHHHHHHHHHS--SHHHHHHHHTCCHHHHHHHHHHHHHHHTS-CCEEECCCC-----EEECHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CHHHHHHHhCCCHHHHHHHHHHHHHHhCC-CeEEecCCCCCCCceEECHHHHHHHH
Confidence 3456666665544 35667888999999999999999976566 4333333 47899999999874
No 277
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=52.87 E-value=15 Score=31.53 Aligned_cols=35 Identities=9% Similarity=0.142 Sum_probs=31.0
Q ss_pred CChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeee
Q psy10346 19 VDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPL 54 (292)
Q Consensus 19 ~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~ 54 (292)
++-.++|.-+|+..+.|.+.++.|+.. |+|++...
T Consensus 218 lt~~~lA~~lG~sr~tvsR~l~~L~~~-GlI~~~~~ 252 (260)
T 3kcc_A 218 ITRQEIGQIVGCSRETVGRILKMLEDQ-NLISAHGK 252 (260)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEECSS
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHC-CCEEEcCC
Confidence 456899999999999999999999986 99998654
No 278
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=52.47 E-value=14 Score=31.05 Aligned_cols=50 Identities=16% Similarity=0.312 Sum_probs=38.2
Q ss_pred HHHHHHHHHhcc----CC-----CCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeee
Q psy10346 4 DLTEKILKYLDT----NP-----PVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPL 54 (292)
Q Consensus 4 ~~e~~iL~~L~~----~~-----~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~ 54 (292)
+.+.++...|.. .+ .++-.++|.-+|+.++.|.+.++.|+.. |+|++...
T Consensus 163 ~~~~Rl~~~L~~l~~~~~~~~~~~~t~~~lA~~lG~sr~tvsR~l~~l~~~-glI~~~~~ 221 (232)
T 1zyb_A 163 DLKSKIIRFFLSHCEKPQGEKTFKVKMDDLARCLDDTRLNISKTLNELQDN-GLIELHRK 221 (232)
T ss_dssp SHHHHHHHHHHTTCSSSSSCEEEECCHHHHHHHHTSCHHHHHHHHHHHHHT-TSCEEETT
T ss_pred CHHHHHHHHHHHHHhhcCCeEEecCCHHHHHHHhCCChhHHHHHHHHHHHC-CCEEecCC
Confidence 455666666632 11 1466899999999999999999999986 99987653
No 279
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=52.45 E-value=14 Score=28.86 Aligned_cols=42 Identities=12% Similarity=0.151 Sum_probs=31.8
Q ss_pred ChHHHHHhhcCCCCCChHHHhhcC----CchhhHHHHHHHcCCeec
Q psy10346 73 SHEVLVFNNVPSEGIGQKELLATF----PNAKVGFSKAMAKGWISL 114 (292)
Q Consensus 73 lPE~rl~~~l~~~~~~~~el~~~~----~~~~ig~~~a~k~gwi~i 114 (292)
.++.+++..|..+++++.+|.+.+ +...-.+..+.++|||..
T Consensus 38 ~~q~~iL~~l~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r 83 (151)
T 3kp7_A 38 AEQSHVLNMLSIEALTVGQITEKQGVNKAAVSRRVKKLLNAELVKL 83 (151)
T ss_dssp HHHHHHHHHHHHSCBCHHHHHHHHCSCSSHHHHHHHHHHHTTSEEC
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 567778888832569999998763 345556778889999997
No 280
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=51.43 E-value=23 Score=30.95 Aligned_cols=49 Identities=12% Similarity=0.130 Sum_probs=43.5
Q ss_pred HHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEee
Q psy10346 4 DLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEP 53 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~ 53 (292)
..+.+||..+...+.++..+++..+|++..-....+..++.. |++-++.
T Consensus 154 ~~~~~il~~~~~~g~vt~~~la~~l~ws~~~a~e~L~~~e~~-G~l~~D~ 202 (218)
T 3cuq_B 154 EMVASALETVSEKGSLTSEEFAKLVGMSVLLAKERLLLAEKM-GHLCRDD 202 (218)
T ss_dssp GGHHHHHHHHHHTSCBCHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEEE
T ss_pred HHHHHHHHHHHHCCCcCHHHHHHHhCCCHHHHHHHHHHHHHc-CCEEEEC
Confidence 567889998888888999999999999999999999999986 9988874
No 281
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=51.37 E-value=21 Score=31.05 Aligned_cols=43 Identities=9% Similarity=0.006 Sum_probs=34.3
Q ss_pred CCCC-ChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEE
Q psy10346 16 NPPV-DTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIW 59 (292)
Q Consensus 16 ~~~~-~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~ 59 (292)
+..+ .-.++|+.+|++...|-.++..|++. |+|......-.++
T Consensus 26 g~~lPse~~La~~~~vSr~tvr~Al~~L~~~-g~i~~~~g~G~~V 69 (239)
T 3bwg_A 26 GDKLPVLETLMAQFEVSKSTITKSLELLEQK-GAIFQVRGSGIFV 69 (239)
T ss_dssp TCBCCCHHHHHHHTTCCHHHHHHHHHHHHHT-TSEEEETTTEEEE
T ss_pred CCCCcCHHHHHHHHCCCHHHHHHHHHHHHHC-CcEEEeCCceEEE
Confidence 4445 45799999999999999999999987 9998765554443
No 282
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=50.48 E-value=20 Score=30.58 Aligned_cols=41 Identities=7% Similarity=0.072 Sum_probs=34.5
Q ss_pred CC-ChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEE
Q psy10346 18 PV-DTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIW 59 (292)
Q Consensus 18 ~~-~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~ 59 (292)
.+ +-.+||+.+|++...|-.++..|++. |+|......-.++
T Consensus 30 ~LPsE~eLa~~~gVSR~tVReAL~~L~~e-Glv~~~~g~G~~V 71 (239)
T 1hw1_A 30 ILPAERELSELIGVTRTTLREVLQRLARD-GWLTIQHGKPTKV 71 (239)
T ss_dssp BCCCHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEETTEEEEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHC-CcEEEecCCCcEe
Confidence 45 45799999999999999999999987 9999877665444
No 283
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=49.78 E-value=9.4 Score=30.72 Aligned_cols=55 Identities=13% Similarity=0.044 Sum_probs=40.4
Q ss_pred HHHHHHHHhcc-CCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeC
Q psy10346 5 LTEKILKYLDT-NPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELT 62 (292)
Q Consensus 5 ~e~~iL~~L~~-~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LT 62 (292)
...++|..|.. .+. .+.++|+..+++..-+.+.+..|... |+|...+- .--|.|+
T Consensus 10 yAl~~L~~La~~~~~-s~~~IA~~~~i~~~~l~kIl~~L~~a-Glv~s~rG-~GGy~La 65 (145)
T 1xd7_A 10 VAIHILSLISMDEKT-SSEIIADSVNTNPVVVRRMISLLKKA-DILTSRAG-VPGASLK 65 (145)
T ss_dssp HHHHHHHHHHTCSCC-CHHHHHHHHTSCHHHHHHHHHHHHHT-TSEECCSS-SSSCEES
T ss_pred HHHHHHHHHHhCCCC-CHHHHHHHHCcCHHHHHHHHHHHHHC-CceEeecC-CCCceec
Confidence 34456666653 234 78999999999999999999999975 99986653 3334443
No 284
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=49.57 E-value=12 Score=31.64 Aligned_cols=43 Identities=12% Similarity=0.091 Sum_probs=35.4
Q ss_pred CCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEE
Q psy10346 16 NPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIW 59 (292)
Q Consensus 16 ~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~ 59 (292)
+..++-.++|+.+|++...|-.++..|++. |+|++....-.++
T Consensus 33 G~~L~e~~La~~lgVSRtpVREAL~~L~~e-Glv~~~~~~G~~V 75 (218)
T 3sxy_A 33 GEKLNVRELSEKLGISFTPVRDALLQLATE-GLVKVVPRVGFFV 75 (218)
T ss_dssp TCEECHHHHHHHHTCCHHHHHHHHHHHHHH-TSEEEETTTEEEE
T ss_pred CCEeCHHHHHHHHCCCHHHHHHHHHHHHHC-CCEEEeCCCceEE
Confidence 334656899999999999999999999997 9999876654443
No 285
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=49.40 E-value=20 Score=31.08 Aligned_cols=43 Identities=7% Similarity=0.014 Sum_probs=35.5
Q ss_pred CCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEE
Q psy10346 16 NPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIW 59 (292)
Q Consensus 16 ~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~ 59 (292)
+..+.-.+||+.+|++...|-.++..|++. |+|++....-.++
T Consensus 49 G~~L~e~~La~~lgVSRtpVREAL~~L~~e-Glv~~~~~~G~~V 91 (239)
T 2hs5_A 49 GARLSEPDICAALDVSRNTVREAFQILIED-RLVAHELNRGVFV 91 (239)
T ss_dssp TCEECHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEEETTTEEEE
T ss_pred cCEeCHHHHHHHHCCCHHHHHHHHHHHHHC-CCEEEeCCCeeEE
Confidence 334666899999999999999999999997 9999877654444
No 286
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=49.31 E-value=11 Score=35.20 Aligned_cols=53 Identities=19% Similarity=0.294 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhhhCCceecCCCCccccceec--cccCCCCCCC--CCCCCCCceeecC
Q psy10346 223 LMKVRAEFRQIFLDMGFTEMPTNNFVESSFWN--FDALFQPQQH--PARDAHDTFFVTD 277 (292)
Q Consensus 223 l~~~~~~i~~if~~mGF~e~~~~~~Ves~f~N--FD~L~~PqdH--PAR~~~DTfyl~~ 277 (292)
=++++..||++|.+.||.|+.| |.+.++--. .-.+|. -+| |+|...-.+||..
T Consensus 39 Rs~i~~~iR~ff~~~gF~EVeT-PiL~~~~~~~a~~~~F~-~~~~~~~~~~~~~~yL~~ 95 (345)
T 3a5y_A 39 RAAIMAEIRRFFADRGVLEVET-PCMSQATVTDIHLVPFE-TRFVGPGHSQGMNLWLMT 95 (345)
T ss_dssp HHHHHHHHHHHHHHTTCEECCC-CSEESSCCCCTTCCCCE-EEECCSTTSCCEEEEECS
T ss_pred HHHHHHHHHHHHHHCCCEEEEC-CEEEecCCCCCccceEE-EEecCcccccCCCEeecC
Confidence 3568888999999999999975 777643221 111111 122 6776656677764
No 287
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=49.24 E-value=18 Score=30.37 Aligned_cols=48 Identities=6% Similarity=-0.024 Sum_probs=36.7
Q ss_pred CCChHHHHHhcCCCH-HHHHHHHHHhhccCCcEEEeeeeEEEEEeChhHHHH
Q psy10346 18 PVDTLDLAKLFNEDH-QKVVGGMKSIETLGEYLIVEPLSHKIWELTGEGNQV 68 (292)
Q Consensus 18 ~~~~~ela~~~~~~~-~~v~~~~~~L~s~~glv~~e~~~~~~~~LTeEG~~y 68 (292)
.++-.++|.-+|+++ +.|.+.++.|+.. |+|+.... ....+-.++.+-
T Consensus 169 ~~t~~~lA~~lG~sr~etvsR~l~~l~~~-glI~~~~~--~i~I~d~~~L~~ 217 (238)
T 2bgc_A 169 NLTMQELGYSSGIAHSSAVSRIISKLKQE-KVIVYKNS--CFYVQNLDYLKR 217 (238)
T ss_dssp CCCHHHHHHHTTCCCHHHHHHHHHHHHHT-TSEEEETT--EEEESCHHHHHH
T ss_pred cCCHHHHHHHhCCChHHHHHHHHHHHHHC-CCEEecCC--EEEEeCHHHHHH
Confidence 356689999999999 7999999999986 99988754 344445555443
No 288
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=48.13 E-value=14 Score=30.63 Aligned_cols=35 Identities=14% Similarity=0.202 Sum_probs=30.8
Q ss_pred CChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeee
Q psy10346 19 VDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPL 54 (292)
Q Consensus 19 ~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~ 54 (292)
++-.++|.-+|+..+.|.++++.|+.. |+|+....
T Consensus 164 ~t~~~lA~~lG~sr~tvsR~l~~L~~~-g~I~~~~~ 198 (222)
T 1ft9_A 164 FTVEEIANLIGSSRQTTSTALNSLIKE-GYISRQGR 198 (222)
T ss_dssp CCHHHHHHHHCSCHHHHHHHHHHHHHT-TSSEECST
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHC-CcEEEcCC
Confidence 456899999999999999999999986 99987654
No 289
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=48.07 E-value=11 Score=35.25 Aligned_cols=67 Identities=9% Similarity=-0.015 Sum_probs=45.3
Q ss_pred HHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeChhHHHHhhcCCh
Q psy10346 7 EKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELTGEGNQVKDNGSH 74 (292)
Q Consensus 7 ~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LTeEG~~yl~~GlP 74 (292)
.+||..|-.+..+...+++...|++...+.++++.|... |+++....-...+-.-.+=-+.+.+|.+
T Consensus 300 ~~ll~~l~~~p~~t~~~~~~~~gvS~~Ta~r~L~~L~e~-GiL~~~~~gR~~~y~~~~~~~~l~~~~~ 366 (373)
T 2qc0_A 300 HELVQVIFEQPYCRIQNLVESGLAKRQTASVYLKQLCDI-GVLEEVQSGKEKLFVHPKFVTLMTKDSN 366 (373)
T ss_dssp HHHHHHHHHCSEEEHHHHHHTSSSCHHHHHHHHHHHHHT-TSCEEC--CCSCEEECHHHHHHHHSSCC
T ss_pred HHHHHHHHhCCcccHHHHHHHhCCCHHHHHHHHHHHHHC-CcEEEecCCCceEEehHHHHHHHccCCc
Confidence 456666665555667889999999999999999999987 9987654444444444444444444433
No 290
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=47.60 E-value=3.9 Score=35.99 Aligned_cols=50 Identities=12% Similarity=0.043 Sum_probs=0.0
Q ss_pred HHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEE-EeChhHHHHhhcC
Q psy10346 22 LDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIW-ELTGEGNQVKDNG 72 (292)
Q Consensus 22 ~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~-~LTeEG~~yl~~G 72 (292)
..-|+.+++++.+|.+.++.||..-|. ..-.+....+ .||+.|+.++..-
T Consensus 20 s~AA~~L~isq~avS~~I~~LE~~lg~-~Lf~R~~r~~~~lT~~G~~l~~~a 70 (324)
T 1al3_A 20 SSTAEGLYTSQPGISKQVRMLEDELGI-QIFARSGKHLTQVTPAGQEIIRIA 70 (324)
T ss_dssp ----------------------------------------------------
T ss_pred HHHHHHhCCCchHHHHHHHHHHHHhCC-EEEEECCCCcceeCHhHHHHHHHH
Confidence 456778999999999999999975443 4444556667 8999999887443
No 291
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=47.34 E-value=21 Score=31.06 Aligned_cols=41 Identities=2% Similarity=0.033 Sum_probs=33.0
Q ss_pred CC-ChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEE
Q psy10346 18 PV-DTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIW 59 (292)
Q Consensus 18 ~~-~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~ 59 (292)
.+ +-.+||+.+|++...|-+++..|++. |+|......-+++
T Consensus 32 ~lPse~~La~~~~vSr~tvr~Al~~L~~~-G~i~~~~g~G~~V 73 (236)
T 3edp_A 32 LMPNETALQEIYSSSRTTIRRAVDLLVEE-GLVVRKNGVGLYV 73 (236)
T ss_dssp --CCHHHHHHHTTCCHHHHHHHHHHHHHT-TSEEEETTTEEEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHC-CCEEEECCceEEE
Confidence 34 45799999999999999999999987 9998766655544
No 292
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=45.56 E-value=65 Score=28.33 Aligned_cols=110 Identities=12% Similarity=0.043 Sum_probs=68.0
Q ss_pred HHHHHHh--ccCCCCChHHHHHhcCCCHHHHHHHHHHhhcc-----CCcEEEeeeeEEEEEeChhHHHHhhcCCh-----
Q psy10346 7 EKILKYL--DTNPPVDTLDLAKLFNEDHQKVVGGMKSIETL-----GEYLIVEPLSHKIWELTGEGNQVKDNGSH----- 74 (292)
Q Consensus 7 ~~iL~~L--~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~-----~glv~~e~~~~~~~~LTeEG~~yl~~GlP----- 74 (292)
+.++.++ ..+.+++..++|+.++++...|..++..|... .|+--++--..-.+..-++=..|++.=.+
T Consensus 17 ~~~iEAlLf~a~epvs~~~La~~l~~~~~~v~~~l~~L~~~y~~~~rGiel~~v~~gy~l~T~~e~~~~v~~~~~~~~~~ 96 (219)
T 2z99_A 17 KRVLEALLLVIDTPVTADALAAATEQPVYRVAAKLQLMADELTGRDSGIDLRHTSEGWRMYTRARFAPYVEKLLLDGART 96 (219)
T ss_dssp HHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCSEEEEEETTEEEEEECGGGHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHhhCCCCEEEEEECCEEEEEEcHHHHHHHHHHhcccccC
Confidence 4455544 34667899999999999999999999998642 25544444444445555554445433111
Q ss_pred ---H--HHHHhhcCC-CCCChHHHhhcCC-chhhHHHHHHHcCCeeccc
Q psy10346 75 ---E--VLVFNNVPS-EGIGQKELLATFP-NAKVGFSKAMAKGWISLDK 116 (292)
Q Consensus 75 ---E--~rl~~~l~~-~~~~~~el~~~~~-~~~ig~~~a~k~gwi~i~~ 116 (292)
- -.++..+.- ++++..+|.+... ...--+..++.+|||+..+
T Consensus 97 ~Ls~aaLEtLaiIAy~QPITR~eI~~irGv~~~~~v~~Lle~gLI~e~G 145 (219)
T 2z99_A 97 KLTRAALETLAVVAYRQPVTRARVSAVRGVNVDAVMRTLLARGLITEVG 145 (219)
T ss_dssp CCCHHHHHHHHHHHHHCSEEHHHHHHHHTSCCHHHHHHHHHTTSEEEEE
T ss_pred ccCHHHHHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHCCCEEEcc
Confidence 1 114555542 4688778776521 1233467899999998743
No 293
>2dk8_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, RNA_POL_RPC34 domain, RNA polymerase III C39 subunit, NPPSFA; NMR {Mus musculus} SCOP: a.4.5.85
Probab=45.40 E-value=40 Score=25.18 Aligned_cols=61 Identities=7% Similarity=0.158 Sum_probs=45.6
Q ss_pred cHHHHHHHHHhccCCC-CChHHHHHhc-CCCHHHHHHHHHHhhccCCcEEEeee-eEEEEEeChh
Q psy10346 3 SDLTEKILKYLDTNPP-VDTLDLAKLF-NEDHQKVVGGMKSIETLGEYLIVEPL-SHKIWELTGE 64 (292)
Q Consensus 3 ~~~e~~iL~~L~~~~~-~~~~ela~~~-~~~~~~v~~~~~~L~s~~glv~~e~~-~~~~~~LTeE 64 (292)
..++.+||..++.... ++-++|...+ +++.+..+.++..|-+. |-|.+-.. ....|++-+.
T Consensus 13 ~~ie~~IL~l~~~~P~GItd~~L~~~~p~~~~~~r~~aIN~LL~~-gkiel~K~~~~liYr~k~~ 76 (81)
T 2dk8_A 13 VEIENRIIELCHQFPHGITDQVIQNEMPHIEAQQRAVAINRLLSM-GQLDLLRSNTGLLYRIKDS 76 (81)
T ss_dssp HHHHHHHHHHHHHCSSCEEHHHHHHHCTTSCHHHHHHHHHHHHHH-TSEEEEECSSSEEEEECCC
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHc-CCeEEEecCCeEEEEeccc
Confidence 3678899999976443 5667787775 56999999999999987 88887655 4457776543
No 294
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=44.11 E-value=23 Score=30.80 Aligned_cols=43 Identities=12% Similarity=0.079 Sum_probs=34.0
Q ss_pred CCCC-ChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEE
Q psy10346 16 NPPV-DTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIW 59 (292)
Q Consensus 16 ~~~~-~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~ 59 (292)
+..+ .-.++|+.+|++...|-+++..|++. |+|......-+++
T Consensus 31 g~~lPse~~La~~~~vSr~tvr~Al~~L~~~-G~i~~~~g~G~~V 74 (243)
T 2wv0_A 31 DMPLPSEREYAEQFGISRMTVRQALSNLVNE-GLLYRLKGRGTFV 74 (243)
T ss_dssp TCBCCCHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEECTTSCEEE
T ss_pred cCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC-CcEEEeCCCeEEE
Confidence 3345 45799999999999999999999987 9998765554443
No 295
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=43.95 E-value=37 Score=28.07 Aligned_cols=52 Identities=6% Similarity=-0.087 Sum_probs=37.2
Q ss_pred CChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeChhHHHHhhcCCh
Q psy10346 19 VDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELTGEGNQVKDNGSH 74 (292)
Q Consensus 19 ~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LTeEG~~yl~~GlP 74 (292)
++-.++|.-+|+.++.|.+.++.|+.. |+ .. .......+..++.+-+..+.|
T Consensus 179 ~t~~~iA~~lg~sr~tvsR~l~~L~~~-gi-~~--~~~~i~I~d~~~L~~~~~~~~ 230 (237)
T 3fx3_A 179 YDKMLIAGRLGMKPESLSRAFSRLKAA-GV-TV--KRNHAEIEDIALLRDYAESDP 230 (237)
T ss_dssp SCTHHHHHHTTCCHHHHHHHHHHHGGG-TE-EC--CTTEEEESCHHHHHHHHCC--
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHC-Ce-Ee--eCCEEEEcCHHHHHHHhcCCc
Confidence 345899999999999999999999987 85 43 234555666666665555444
No 296
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=43.77 E-value=0.48 Score=44.35 Aligned_cols=51 Identities=10% Similarity=0.048 Sum_probs=39.3
Q ss_pred HHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeC
Q psy10346 11 KYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELT 62 (292)
Q Consensus 11 ~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LT 62 (292)
.+|-..+..+..++|+.+|++...|-.++.+|+.+ |+|....-....|...
T Consensus 25 ~~Ll~~g~~t~~eia~~~gv~~~~Vy~~L~~L~~~-GlV~~~~g~p~~y~av 75 (342)
T 3qph_A 25 WTLLVYGPSTAKEISTKSGIPYNRVYDTISSLKLR-GFVTEIEGTPKVYAAY 75 (342)
T ss_dssp HHHHHHHHHHHSCCSSSTTSSSCSCCHHHHHHHHH-TSEEEECCTTCEEEEC
T ss_pred HHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC-CCEEEEcCceeEEEEc
Confidence 33333445567889999999999999999999987 9999875555566555
No 297
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35
Probab=43.08 E-value=1e+02 Score=23.57 Aligned_cols=104 Identities=12% Similarity=0.102 Sum_probs=68.3
Q ss_pred HHHHHhccCCC-CChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeChhHHHHhhcCChHHHHHhhcC---
Q psy10346 8 KILKYLDTNPP-VDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELTGEGNQVKDNGSHEVLVFNNVP--- 83 (292)
Q Consensus 8 ~iL~~L~~~~~-~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LTeEG~~yl~~GlPE~rl~~~l~--- 83 (292)
.|...|...+. ..+.+++...|++.+.+...+..|.+.++++.+.......| ++.+--+-++ .++...|.
T Consensus 6 ~l~~~L~~~~~~~~~~~l~~~~~l~~~~l~~~l~~l~~~~~~~~~~~~~~~~~-~~~~~~~~l~-----~~l~~~L~~yH 79 (135)
T 2v9v_A 6 ILAQIIQEHREGLDWQEAATRASLSLEETRKLLQSMAAAGQVTLLRVENDLYA-ISTERYQAWW-----QAVTRALEEFH 79 (135)
T ss_dssp HHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTCEEEEEETTEEEE-EEHHHHHHHH-----HHHHHHHHHHH
T ss_pred HHHHHHHHcCcCCCHHHHHHHhCCCHHHHHHHHHHHHhCCcEEEEecCCCeEE-ecHHHHHHHH-----HHHHHHHHHHH
Confidence 34455544433 34489999999999999999999988756666643122223 6665555443 35666664
Q ss_pred -----CCCCChHHHhhcC-C-----chhhHHHHHHHcCCeecccC
Q psy10346 84 -----SEGIGQKELLATF-P-----NAKVGFSKAMAKGWISLDKA 117 (292)
Q Consensus 84 -----~~~~~~~el~~~~-~-----~~~ig~~~a~k~gwi~i~~~ 117 (292)
..|++.++|+... + .+..-+..+.+.|.|+..++
T Consensus 80 ~~~P~~~G~~keeLr~~~~~~~~~~~~~~ll~~l~~~g~l~~~~~ 124 (135)
T 2v9v_A 80 SRYPLRPGLAREELRSRYFSRLPARVYQALLEEWSREGRLQLAAN 124 (135)
T ss_dssp HHCTTSSCEEHHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEECSS
T ss_pred HhCCCccCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCEEecCC
Confidence 2478889998752 2 23445667888999988775
No 298
>3aaf_A Werner syndrome ATP-dependent helicase; helix-turn-helix, winged-helix, protein-DNA complex, DNA-BIN helicase; HET: DNA; 1.90A {Homo sapiens} PDB: 2axl_A
Probab=42.90 E-value=25 Score=28.30 Aligned_cols=45 Identities=18% Similarity=0.134 Sum_probs=35.6
Q ss_pred CCHHHHHHHHHHhhccCCcEEEeeeeE---EEEEeChhHHHHhhcCChH
Q psy10346 30 EDHQKVVGGMKSIETLGEYLIVEPLSH---KIWELTGEGNQVKDNGSHE 75 (292)
Q Consensus 30 ~~~~~v~~~~~~L~s~~glv~~e~~~~---~~~~LTeEG~~yl~~GlPE 75 (292)
.+...+.+.+..|-+. |++....... ..+.||+.|+.+|+....|
T Consensus 65 ~s~~~w~~lirqLi~~-G~L~~~~~~~~~~~~L~Lt~~g~~vL~~~~~~ 112 (134)
T 3aaf_A 65 QTESWWKAFSRQLITE-GFLVEVSRYNKFMKICALTKKGRNWLHKANTE 112 (134)
T ss_dssp SCHHHHHHHHHHHHHT-TSEEEEECSSTTCEEEEECHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHHc-CCceeecCcCccCceEEECHHHHHHHhCCccC
Confidence 4678899999999987 9999876331 2499999999998776653
No 299
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=42.76 E-value=32 Score=30.58 Aligned_cols=43 Identities=5% Similarity=-0.041 Sum_probs=33.6
Q ss_pred CCCC-ChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEE
Q psy10346 16 NPPV-DTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIW 59 (292)
Q Consensus 16 ~~~~-~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~ 59 (292)
+..+ +-.+||+.+|++...|-.|+..|++. |+|......-.++
T Consensus 50 g~~lPse~~La~~~~vSr~tvr~Al~~L~~~-G~i~~~~g~G~~V 93 (272)
T 3eet_A 50 HTRLPSQARIREEYGVSDTVALEARKVLMAE-GLVEGRSGSGTYV 93 (272)
T ss_dssp TSBCCCHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEECCC--EEE
T ss_pred cCCCcCHHHHHHHHCCCHHHHHHHHHHHHHC-CCEEEecCceEEE
Confidence 3345 45799999999999999999999987 9998766655544
No 300
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=42.03 E-value=17 Score=30.79 Aligned_cols=43 Identities=9% Similarity=0.100 Sum_probs=35.1
Q ss_pred CCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEE
Q psy10346 16 NPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIW 59 (292)
Q Consensus 16 ~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~ 59 (292)
+..+.-.++|+.+|++...|-.++..|++. |+|++....-.++
T Consensus 37 G~~L~E~~La~~lgVSRtpVREAl~~L~~e-Glv~~~~~~G~~V 79 (222)
T 3ihu_A 37 GQRLVETDLVAHFGVGRNSVREALQRLAAE-GIVDLQRHRGAVI 79 (222)
T ss_dssp TCEECHHHHHHHHTCCHHHHHHHHHHHHHT-TSEEECSTTCEEE
T ss_pred CCccCHHHHHHHHCCCHHHHHHHHHHHHHC-CCEEEecCCCeEE
Confidence 334556889999999999999999999997 9999876654444
No 301
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=41.33 E-value=58 Score=29.26 Aligned_cols=70 Identities=17% Similarity=0.138 Sum_probs=48.5
Q ss_pred HHHHHHHHhcc---CCCCChHHHHHhcCCCHHHHHHHHH-HhhccCCcEEEeeeeEEEEEeChhHHHHhhcCChHHHH
Q psy10346 5 LTEKILKYLDT---NPPVDTLDLAKLFNEDHQKVVGGMK-SIETLGEYLIVEPLSHKIWELTGEGNQVKDNGSHEVLV 78 (292)
Q Consensus 5 ~e~~iL~~L~~---~~~~~~~ela~~~~~~~~~v~~~~~-~L~s~~glv~~e~~~~~~~~LTeEG~~yl~~GlPE~rl 78 (292)
..+.+|.++.. ++.+...++|...|.+...+..... .|... |+|.....-. .+|+.|-+++..-.|..++
T Consensus 260 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~t~~~~~~~~l~~~-g~i~~~~~gr---~~~~~~~~~~~~~~~~~~~ 333 (334)
T 1in4_A 260 FDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEVYEPYLLQA-GFLARTPRGR---IVTEKAYKHLKYEVPENRL 333 (334)
T ss_dssp HHHHHHHHHHHHSTTCCBCHHHHHHHHTSCHHHHHHHTHHHHHHT-TSEEEETTEE---EECHHHHHHTTCCCC----
T ss_pred HHHHHHHHHHHHhCCCcchHHHHHHHhCCCcchHHHHHHHHHHHc-CCeecccccH---HhhHHHHHHhCCCCCcccc
Confidence 34567777643 5566778999999999877666555 56665 9998877633 6899999998655666555
No 302
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=41.28 E-value=50 Score=28.73 Aligned_cols=57 Identities=5% Similarity=0.110 Sum_probs=41.8
Q ss_pred HHHHHHHHHhccCCCCChHHHHHhc-----CCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeChhH
Q psy10346 4 DLTEKILKYLDTNPPVDTLDLAKLF-----NEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELTGEG 65 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~~~~ela~~~-----~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LTeEG 65 (292)
+.++.+|..+.. +..+..+++..+ +++...+..++..|... |+|... ...|.+++..
T Consensus 282 ~~~~~~l~~la~-g~~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~~-gli~~~---~~~y~~~~p~ 343 (350)
T 2qen_A 282 PRYVDILRAIAL-GYNRWSLIRDYLAVKGTKIPEPRLYALLENLKKM-NWIVEE---DNTYKIADPV 343 (350)
T ss_dssp HHHHHHHHHHHT-TCCSHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT-TSEEEE---TTEEEESSHH
T ss_pred hhHHHHHHHHHh-CCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC-CCEEec---CCEEEEecHH
Confidence 456788888876 455667787665 88999999999999986 998754 2356666543
No 303
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=40.76 E-value=51 Score=22.26 Aligned_cols=40 Identities=10% Similarity=0.070 Sum_probs=31.6
Q ss_pred HHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhcc
Q psy10346 4 DLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETL 45 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~ 45 (292)
+.|..||..+.. + .+..++|..+|++...|-..+..+..+
T Consensus 14 ~~e~~il~~~~~-g-~s~~eIA~~l~is~~tV~~~~~~~~~k 53 (74)
T 1fse_A 14 KREREVFELLVQ-D-KTTKEIASELFISEKTVRNHISNAMQK 53 (74)
T ss_dssp HHHHHHHHHHTT-T-CCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-C-CCHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 678888888743 2 477999999999999998888876643
No 304
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=40.50 E-value=4.3 Score=36.05 Aligned_cols=58 Identities=21% Similarity=0.174 Sum_probs=43.3
Q ss_pred CCCCCCCCCCChH-HHHHHHHHHHhhhCCceec--CCCCccccceeccccCCCCCCCCCCC
Q psy10346 211 MGISLPSGHLHPL-MKVRAEFRQIFLDMGFTEM--PTNNFVESSFWNFDALFQPQQHPARD 268 (292)
Q Consensus 211 ~~~~~~~g~~Hpl-~~~~~~i~~if~~mGF~e~--~~~~~Ves~f~NFD~L~~PqdHPAR~ 268 (292)
|++.+.+.+.||. .++.+.+...+.++|+-.. .....++..||.+=+++.|+-.++|=
T Consensus 2 ~~~~p~p~~~~P~~~~~~~~~~~W~~~~~l~~~~~~r~r~~~~~~~~~~~~~~P~~~~~rl 62 (300)
T 1di1_A 2 PPPTQWSYLCHPRVKEVQDEVDGYFLENWKFPSFKAVRTFLDAKFSEVTCLYFPLALDDRI 62 (300)
T ss_dssp CCCCSCCCCCCTTHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHCHHHHHHHHCTTSCTTTH
T ss_pred CCCCCCCcccCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHhcCcchhhhhcCCCCCHHHH
Confidence 4555667889994 5577788888899987421 11245778899999999999999884
No 305
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=40.31 E-value=5.9 Score=32.87 Aligned_cols=35 Identities=17% Similarity=0.222 Sum_probs=0.0
Q ss_pred CChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeee
Q psy10346 19 VDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPL 54 (292)
Q Consensus 19 ~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~ 54 (292)
++-.++|..+|++.+.|.+.++.|+.. |+|+....
T Consensus 165 ~t~~~lA~~lg~sr~tvsR~l~~L~~~-G~I~~~~~ 199 (213)
T 1o5l_A 165 VTLEELSRLFGCARPALSRVFQELERE-GYIEKHGR 199 (213)
T ss_dssp ------------------------------------
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHC-CeEEEcCC
Confidence 455889999999999999999999986 99987653
No 306
>2xub_A DNA-directed RNA polymerase III subunit RPC3; transcription, winged helix; 2.80A {Homo sapiens} PDB: 2xv4_S
Probab=39.11 E-value=28 Score=34.17 Aligned_cols=52 Identities=2% Similarity=0.109 Sum_probs=37.0
Q ss_pred HHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEE
Q psy10346 5 LTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHK 57 (292)
Q Consensus 5 ~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~ 57 (292)
...+|+..|...+.++-+++|+..+++...+-+.+..|... |+|.+.+..+.
T Consensus 361 ~a~RI~r~L~~~~~l~d~~ia~~a~i~~k~vR~~Ly~L~~~-g~v~~qevp~~ 412 (534)
T 2xub_A 361 RCARIFRLVLQKKHIEQKQVEDFAMIPAKEAKDMLYKMLSE-NFMSLQEIPKT 412 (534)
T ss_dssp HHHHHHHHHHHC---CHHHHHHHHCSCHHHHHHHHHHHHHT-TCC--------
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHHHC-CCeEEEEccCC
Confidence 34578889987788999999999999999999999999986 99999886443
No 307
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=38.86 E-value=27 Score=28.89 Aligned_cols=49 Identities=16% Similarity=0.221 Sum_probs=39.5
Q ss_pred CCChHHHHHhcC--------------CCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeChhHHHHh
Q psy10346 18 PVDTLDLAKLFN--------------EDHQKVVGGMKSIETLGEYLIVEPLSHKIWELTGEGNQVK 69 (292)
Q Consensus 18 ~~~~~ela~~~~--------------~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LTeEG~~yl 69 (292)
.....+||..+| ++...|-.++..|++. |+|..... .-..+|..|.+-+
T Consensus 67 ~~G~~~La~~~gg~k~~g~~p~~~~~vSr~tVR~AL~~Le~~-GlV~~~~~--~G~~Vt~~~~~~l 129 (150)
T 2v7f_A 67 PVGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAA-GFVEKVPG--KGRVITPKGRSFL 129 (150)
T ss_dssp SBCHHHHHHHHCC----CCCTTSCCCHHHHHHHHHHHHHHHT-TSEEEETT--TEEEECHHHHHHH
T ss_pred CCCHHHHHHHHCCCccCCcCCccccccchHHHHHHHHHHHHC-CCEEEeCC--CceEECCCCHHHH
Confidence 445689999999 9999999999999987 99987643 3456788887655
No 308
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=38.84 E-value=26 Score=26.99 Aligned_cols=40 Identities=13% Similarity=0.279 Sum_probs=32.8
Q ss_pred HHHHHHHHHhccCC----CCChHHHHHhcCCCHHHHHHHHHHhh
Q psy10346 4 DLTEKILKYLDTNP----PVDTLDLAKLFNEDHQKVVGGMKSIE 43 (292)
Q Consensus 4 ~~e~~iL~~L~~~~----~~~~~ela~~~~~~~~~v~~~~~~L~ 43 (292)
+.|++|...+-++. ..+..++|+.+|++...|+|-++.|-
T Consensus 17 ~~e~~ia~yil~~~~~~~~~si~elA~~~~vS~aTv~Rf~kkLG 60 (107)
T 3iwf_A 17 KNEKKIAQFILNYPHKVVNMTSQEIANQLETSSTSIIRLSKKVT 60 (107)
T ss_dssp HHHHHHHHHHHHCHHHHTTCCHHHHHHHHTSCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCHHHHHHCCHHHHHHHHCCCHHHHHHHHHHhC
Confidence 56778887775543 35779999999999999999999994
No 309
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=38.56 E-value=6.6 Score=35.33 Aligned_cols=58 Identities=7% Similarity=0.118 Sum_probs=0.0
Q ss_pred HHHHHHHHHhccC---CCCChHHHHHhc-CCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeCh
Q psy10346 4 DLTEKILKYLDTN---PPVDTLDLAKLF-NEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELTG 63 (292)
Q Consensus 4 ~~e~~iL~~L~~~---~~~~~~ela~~~-~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LTe 63 (292)
+.+.+||..|... ..+...++++.+ +++.+.|..++..|.+. |+| ..-.....|..|+
T Consensus 207 ~~~~~Vl~~i~~~~~~~Gi~~~~I~~~l~~~~~~~v~~al~~L~~e-G~I-YsTiDd~h~k~t~ 268 (270)
T 2pi2_A 207 VAQNQVLNLIKACPRPEGLNFQDLKNQLKHMSVSSIKQAVDFLSNE-GHI-YSTVDDDHFKSTD 268 (270)
T ss_dssp ----------------------------------------------------------------
T ss_pred HHHHHHHHHHHhCCCccCCCHHHHHHHhcCCCHHHHHHHHHHHHhC-CEE-eccccccceeecc
Confidence 4677899999764 235667888877 78999999999999986 888 5666666666664
No 310
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=38.38 E-value=6.6 Score=39.32 Aligned_cols=57 Identities=12% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEE-eeeeEEEEEeCh
Q psy10346 6 TEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIV-EPLSHKIWELTG 63 (292)
Q Consensus 6 e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~-e~~~~~~~~LTe 63 (292)
+..|++.|...+.++..++++.+|++...+-+.+..|... |+|+- -.-....|.+|+
T Consensus 518 ~~~I~~~l~~~g~it~~di~~l~~ls~~qa~~~L~~Lv~~-G~l~~~G~gr~t~Y~~~~ 575 (583)
T 3lmm_A 518 TNAAMLWLSEVGDLATSDLMAMCGVSRGTAKACVDGLVDE-ERVVAVGGGRSRRYRLVE 575 (583)
T ss_dssp -----------------------------------------------------------
T ss_pred HHHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHC-CcEEEeCCCCceEEEEee
Confidence 4568999988888999999999999999999999999986 87654 445566777776
No 311
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=37.40 E-value=34 Score=26.39 Aligned_cols=44 Identities=23% Similarity=0.234 Sum_probs=32.3
Q ss_pred ChHHHHHhhcCC---CCCChHHHhhcC----CchhhHHHHHHHcCCeeccc
Q psy10346 73 SHEVLVFNNVPS---EGIGQKELLATF----PNAKVGFSKAMAKGWISLDK 116 (292)
Q Consensus 73 lPE~rl~~~l~~---~~~~~~el~~~~----~~~~ig~~~a~k~gwi~i~~ 116 (292)
.+++.++..|.. +++++.+|.+.+ +...-.+..+.++|||....
T Consensus 41 ~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~ 91 (148)
T 3jw4_A 41 SQQGRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEKKGYIERRI 91 (148)
T ss_dssp HHHHHHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHHTTSBCCC-
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEeeC
Confidence 467778888864 469999999874 35566778899999998753
No 312
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=36.13 E-value=62 Score=23.26 Aligned_cols=40 Identities=10% Similarity=0.177 Sum_probs=32.2
Q ss_pred HHHHHHHHhccCCC--CChHHHHHhcCCCHHHHHHHHHHhhc
Q psy10346 5 LTEKILKYLDTNPP--VDTLDLAKLFNEDHQKVVGGMKSIET 44 (292)
Q Consensus 5 ~e~~iL~~L~~~~~--~~~~ela~~~~~~~~~v~~~~~~L~s 44 (292)
+...|+..|.++|- .+.+++|..+|++.+.|-.+++.+++
T Consensus 33 Ia~~iI~~LD~~GYL~~~l~eia~~l~~~~~eve~vL~~lQ~ 74 (76)
T 2k9l_A 33 LALELLNYLNEKGFLSKSVEEISDVLRCSVEELEKVRQKVLR 74 (76)
T ss_dssp HHHHHHHHCTTSSTTCCCHHHHHHHHTSCHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCCCCCCCHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 44567777777775 46799999999999999999988874
No 313
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=36.04 E-value=49 Score=21.64 Aligned_cols=39 Identities=10% Similarity=0.119 Sum_probs=29.3
Q ss_pred HHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhcc
Q psy10346 5 LTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETL 45 (292)
Q Consensus 5 ~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~ 45 (292)
.|.+||..+..+ .+..++|..+|++...|-..+..+..+
T Consensus 2 re~~vl~l~~~g--~s~~eIA~~l~is~~tV~~~~~~~~~k 40 (61)
T 2jpc_A 2 RERQVLKLIDEG--YTNHGISEKLHISIKTVETHRMNMMRK 40 (61)
T ss_dssp HHHHHHHHHHTS--CCSHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC--CCHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 467788776433 356899999999999888777776543
No 314
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2
Probab=35.94 E-value=23 Score=33.76 Aligned_cols=58 Identities=14% Similarity=0.119 Sum_probs=41.0
Q ss_pred HHHHHhccCCCCChHHHHHhcCCCHHHH----HHHHHHhhccCCcEEEeeeeEEEEEeChhHHHHh
Q psy10346 8 KILKYLDTNPPVDTLDLAKLFNEDHQKV----VGGMKSIETLGEYLIVEPLSHKIWELTGEGNQVK 69 (292)
Q Consensus 8 ~iL~~L~~~~~~~~~ela~~~~~~~~~v----~~~~~~L~s~~glv~~e~~~~~~~~LTeEG~~yl 69 (292)
.++..|.-...++...+.+..|.+..+. +..+..|... |++..+ ...+.||++|+.++
T Consensus 372 ~~~~~Lr~~~g~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-gll~~~---~~~~~lT~~G~~~~ 433 (457)
T 1olt_A 372 DVIKSLICNFRLDYSPIEQQWDLLFADYFAEDLKLLAPLAKD-GLVDVD---EKGIQVTAKGRLLI 433 (457)
T ss_dssp HHHHHHHHHSEEEHHHHHHHTTCCHHHHTHHHHHHHHHHHHT-TSEEEC---SSEEEECTTTGGGH
T ss_pred HHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC-CCEEEE---CCEEEECHhhHHHH
Confidence 3444454444578888888899885443 3456778776 999865 45799999998766
No 315
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=35.58 E-value=35 Score=26.28 Aligned_cols=40 Identities=18% Similarity=0.253 Sum_probs=32.8
Q ss_pred HHHHHHHHHhccCC----CCChHHHHHhcCCCHHHHHHHHHHhh
Q psy10346 4 DLTEKILKYLDTNP----PVDTLDLAKLFNEDHQKVVGGMKSIE 43 (292)
Q Consensus 4 ~~e~~iL~~L~~~~----~~~~~ela~~~~~~~~~v~~~~~~L~ 43 (292)
+.|++|..++-++. ..+..++|+.+|++...|+|-++.|-
T Consensus 21 ~~e~~ia~yil~~~~~~~~~si~elA~~~~vS~aTv~Rf~kklG 64 (111)
T 2o3f_A 21 PSERKLADYILAHPHXAIESTVNEISALANSSDAAVIRLCXSLG 64 (111)
T ss_dssp HHHHHHHHHHHHCHHHHHTCCHHHHHHHTTCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHChHHHHhcCHHHHHHHHCCCHHHHHHHHHHcC
Confidence 56778888776543 35779999999999999999999995
No 316
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=35.41 E-value=34 Score=21.17 Aligned_cols=34 Identities=18% Similarity=0.173 Sum_probs=25.1
Q ss_pred HHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHh
Q psy10346 7 EKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSI 42 (292)
Q Consensus 7 ~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L 42 (292)
..|+..+.. + ....++|..+|++...|.++++..
T Consensus 12 ~~i~~l~~~-g-~s~~~ia~~lgvs~~Tv~r~l~~~ 45 (52)
T 1jko_C 12 EQISRLLEK-G-HPRQQLAIIFGIGVSTLYRYFPAS 45 (52)
T ss_dssp HHHHHHHHT-T-CCHHHHHHTTSCCHHHHHHHSCTT
T ss_pred HHHHHHHHc-C-CCHHHHHHHHCCCHHHHHHHHHHc
Confidence 455665543 3 577999999999999888876544
No 317
>1ucr_A Protein DSVD; dissimilatory sulfite reductase D, DNA binding motif, sulfate-reducing bacteria, winged-helix motif, unknown function; 1.20A {Desulfovibrio vulgaris} SCOP: a.4.5.45 PDB: 1wq2_A
Probab=34.93 E-value=88 Score=23.28 Aligned_cols=69 Identities=19% Similarity=0.293 Sum_probs=52.1
Q ss_pred cHHHHHHHHHhccC--C--CCChHHHHHhc-CCCHHHHHHHHHHhhccCCcEEEee-eeEEEEEeChhHHHHhhcC
Q psy10346 3 SDLTEKILKYLDTN--P--PVDTLDLAKLF-NEDHQKVVGGMKSIETLGEYLIVEP-LSHKIWELTGEGNQVKDNG 72 (292)
Q Consensus 3 ~~~e~~iL~~L~~~--~--~~~~~ela~~~-~~~~~~v~~~~~~L~s~~glv~~e~-~~~~~~~LTeEG~~yl~~G 72 (292)
++..+.||..|... . ..-..+++..+ +..+..|-.++..|-.. |-+..=. -.++.|-|...|++--.+|
T Consensus 2 ee~K~~Ile~l~~k~~~KskfYf~D~~k~~P~~k~r~vKK~~~~LV~E-g~leywSSGSTTmyglkg~gk~~~~e~ 76 (78)
T 1ucr_A 2 EEAKQKVVDFLNSKSGSKSKFYFNDFTDLFPDMKQREVKKILTALVND-EVLEYWSSGSTTMYGLKGAGKQAAAEH 76 (78)
T ss_dssp CHHHHHHHHHHSSHHHHSSCEEHHHHHHHCTTSCHHHHHHHHHHHHHT-TSEEEEEETTEEEEEETTHHHHHHC--
T ss_pred hHHHHHHHHHHHhcccccccchHHHHHHHccccCHHHHHHHHHHHHhc-CceEEEecCCeEEEecCCCCCCccccc
Confidence 45677899999653 1 22346888887 89999999999999876 8888844 4589999999999876554
No 318
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=34.91 E-value=10 Score=29.91 Aligned_cols=39 Identities=8% Similarity=0.051 Sum_probs=31.6
Q ss_pred ChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEE
Q psy10346 20 DTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIW 59 (292)
Q Consensus 20 ~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~ 59 (292)
+-.++|..+|++...|..++..|++. |+|......-.++
T Consensus 37 s~~~La~~~~vSr~tvr~Al~~L~~~-G~i~~~~~~G~~V 75 (126)
T 3ic7_A 37 SVREYASIVEVNANTVMRSYEYLQSQ-EVIYNKRGIGFFV 75 (126)
T ss_dssp CTTTTTTCC-CCSGGGHHHHHHHHTT-TSEEEETTTEEEE
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHC-CcEEEEcCCccEE
Confidence 44689999999999999999999987 9998776655444
No 319
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=34.74 E-value=2e+02 Score=23.90 Aligned_cols=100 Identities=11% Similarity=0.127 Sum_probs=65.7
Q ss_pred cCCCCChHHHHHhcC--CCHHHHHHHHHHhhcc-----CCcEEEeeeeEEEEEeChhHHHHhhc--CCh-HHH-------
Q psy10346 15 TNPPVDTLDLAKLFN--EDHQKVVGGMKSIETL-----GEYLIVEPLSHKIWELTGEGNQVKDN--GSH-EVL------- 77 (292)
Q Consensus 15 ~~~~~~~~ela~~~~--~~~~~v~~~~~~L~s~-----~glv~~e~~~~~~~~LTeEG~~yl~~--GlP-E~r------- 77 (292)
.+.+++..++|+.++ ++...|..++..|... .|+--++--..-.+..-++=-.|++. ..| ..+
T Consensus 19 ~~~pvs~~~La~~~~~~~~~~~v~~~l~~L~~~y~~~~rg~~l~~v~~gy~l~t~~~~~~~v~~~~~~~~~~~LS~aaLE 98 (162)
T 1t6s_A 19 SEEPVNLQTLSQITAHKFTPSELQEAVDELNRDYEATGRTFRIHAIAGGYRFLTEPEFADLVRQLLAPVIQRRLSRSMLE 98 (162)
T ss_dssp CSSCBCHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHTCSEEEEEETTEEEEEECGGGHHHHHHHHSCHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHhCcCCCHHHHHHHHHHHHHHhhhCCCCEEEEEECCEEEEEEcHHHHHHHHHHhcccccCccCHHHHH
Confidence 456789999999999 9999999999888632 25544455555555666666666655 333 223
Q ss_pred HHhhcC-CCCCChHHHhhcCC-chhhHHHHHHHcCCeec
Q psy10346 78 VFNNVP-SEGIGQKELLATFP-NAKVGFSKAMAKGWISL 114 (292)
Q Consensus 78 l~~~l~-~~~~~~~el~~~~~-~~~ig~~~a~k~gwi~i 114 (292)
++..+. ..+++-.+|.+... ...--+..++..|||+.
T Consensus 99 tLaiIay~qPiTR~eI~~irGv~~~~~v~~L~e~glI~e 137 (162)
T 1t6s_A 99 VLAVVAWHQPVTKGEIQQIRGASPDYSIDRLLARGLIEV 137 (162)
T ss_dssp HHHHHHHHCSEEHHHHHHHHTCCCCSHHHHHHHTTSEEE
T ss_pred HHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHCCCEEE
Confidence 444443 25688888877521 12334778999999986
No 320
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=34.52 E-value=81 Score=25.78 Aligned_cols=58 Identities=21% Similarity=0.167 Sum_probs=40.4
Q ss_pred HHHHHHHHHhccC-CCCChHHHHHh-------cCCCHHHHHHHHHHhhccCCcEEEeee--eEEEEEeC
Q psy10346 4 DLTEKILKYLDTN-PPVDTLDLAKL-------FNEDHQKVVGGMKSIETLGEYLIVEPL--SHKIWELT 62 (292)
Q Consensus 4 ~~e~~iL~~L~~~-~~~~~~ela~~-------~~~~~~~v~~~~~~L~s~~glv~~e~~--~~~~~~LT 62 (292)
.....||..|... +..+.+++... .+++...|-+.+..|.+. |+|.--.. ....|.+.
T Consensus 33 ~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~-Glv~~i~~~~~~~~Y~~~ 100 (162)
T 4ets_A 33 KQREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEA-EMVTSISFGSAGKKYELA 100 (162)
T ss_dssp HHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHT-TSEEECC-----CCEEEC
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHC-CCEEEEEeCCCceEEEeC
Confidence 4567799999653 45777777553 358899999999999987 99976432 23346554
No 321
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=33.80 E-value=36 Score=26.43 Aligned_cols=44 Identities=9% Similarity=0.147 Sum_probs=31.4
Q ss_pred ChHHHHHhhcCC-CCCChHHHhhcC----CchhhHHHHHHHcCCeeccc
Q psy10346 73 SHEVLVFNNVPS-EGIGQKELLATF----PNAKVGFSKAMAKGWISLDK 116 (292)
Q Consensus 73 lPE~rl~~~l~~-~~~~~~el~~~~----~~~~ig~~~a~k~gwi~i~~ 116 (292)
.++.+++..|.. +++++.+|.+.+ +...-.+..+.++|||....
T Consensus 41 ~~q~~iL~~l~~~~~~~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~ 89 (149)
T 4hbl_A 41 YSQYLVMLTLWEENPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRER 89 (149)
T ss_dssp HHHHHHHHHHHHSSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC--
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeCC
Confidence 467788888864 568999998863 23455667788899998753
No 322
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=33.05 E-value=39 Score=29.81 Aligned_cols=39 Identities=21% Similarity=0.302 Sum_probs=33.9
Q ss_pred HHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhh
Q psy10346 5 LTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIE 43 (292)
Q Consensus 5 ~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~ 43 (292)
+-..||..|..+..++..++|...|++.++|..++..|.
T Consensus 23 ~~~~llr~la~Grpv~~~~LA~~~g~~~~~v~~~L~~l~ 61 (220)
T 3f2g_A 23 LLVPLLRELAKGRPVSRTTLAGILDWPAERVAAVLEQAT 61 (220)
T ss_dssp HHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHCT
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHhCcCHHHHHHHHHhCC
Confidence 344688889888889999999999999999999998885
No 323
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=31.77 E-value=40 Score=26.55 Aligned_cols=44 Identities=14% Similarity=0.251 Sum_probs=32.5
Q ss_pred ChHHHHHhhcCC-CCCChHHHhhcC----CchhhHHHHHHHcCCeeccc
Q psy10346 73 SHEVLVFNNVPS-EGIGQKELLATF----PNAKVGFSKAMAKGWISLDK 116 (292)
Q Consensus 73 lPE~rl~~~l~~-~~~~~~el~~~~----~~~~ig~~~a~k~gwi~i~~ 116 (292)
.+++.++..|.. +++++.+|.+.+ +...-.+..+.++|||....
T Consensus 46 ~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~ 94 (162)
T 3k0l_A 46 LPQFTALSVLAAKPNLSNAKLAERSFIKPQSANKILQDLLANGWIEKAP 94 (162)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCeEecC
Confidence 467778888875 469999998863 24455677888899998743
No 324
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=31.68 E-value=52 Score=24.94 Aligned_cols=45 Identities=13% Similarity=0.102 Sum_probs=33.1
Q ss_pred CChHHHHHhhc-CC-CCCChHHHhhcC--C--chhhHHHHHHHcCCeeccc
Q psy10346 72 GSHEVLVFNNV-PS-EGIGQKELLATF--P--NAKVGFSKAMAKGWISLDK 116 (292)
Q Consensus 72 GlPE~rl~~~l-~~-~~~~~~el~~~~--~--~~~ig~~~a~k~gwi~i~~ 116 (292)
..++.+++..| .. +++++.+|.+.+ + ...-.+..+.++|||....
T Consensus 36 ~~~~~~iL~~l~~~~~~~t~~~la~~l~~s~~~vs~~l~~L~~~glv~r~~ 86 (146)
T 2fbh_A 36 SQARWLVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLA 86 (146)
T ss_dssp TTTHHHHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CHHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCeeecC
Confidence 35688888888 54 469999998863 2 3445677888899998753
No 325
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=31.15 E-value=83 Score=31.51 Aligned_cols=51 Identities=16% Similarity=0.251 Sum_probs=44.5
Q ss_pred cHHHHHHHHHhccCCCCChHHHHHhcC-------CCHHHHHHHHHHhhccCCcEEEeee
Q psy10346 3 SDLTEKILKYLDTNPPVDTLDLAKLFN-------EDHQKVVGGMKSIETLGEYLIVEPL 54 (292)
Q Consensus 3 ~~~e~~iL~~L~~~~~~~~~ela~~~~-------~~~~~v~~~~~~L~s~~glv~~e~~ 54 (292)
+..+.+||..++..+.++..++++.+| ++..-...++..++.. |++-+++.
T Consensus 493 ~~~~~~il~l~~~~g~vT~~~la~~lg~~~~~~~Ws~~~A~e~L~~~e~e-G~l~rDd~ 550 (566)
T 1w7p_D 493 DVVKEKLVDLIGDNPGSDLLRLTQILSSNNSKSNWTLGILMEVLQNCVDE-GDLLIDKQ 550 (566)
T ss_dssp HHHHHHHHHHHTTSTTCCHHHHHHHHSCSSSCCCBCHHHHHHHHHHHHHT-TSEEEEEE
T ss_pred hHHHHHHHHHHHhcCCcCHHHHHHHhCCccccCcccHHHHHHHHHHHHHc-CCEEEECC
Confidence 356788999888788899999999999 9999999999999986 99988754
No 326
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=30.78 E-value=58 Score=26.97 Aligned_cols=49 Identities=4% Similarity=0.076 Sum_probs=36.7
Q ss_pred cHHHHHHHHHhcc----CCC-CChHHHHHhcCCC-HHHHHHHHHHhhccCCcEEEe
Q psy10346 3 SDLTEKILKYLDT----NPP-VDTLDLAKLFNED-HQKVVGGMKSIETLGEYLIVE 52 (292)
Q Consensus 3 ~~~e~~iL~~L~~----~~~-~~~~ela~~~~~~-~~~v~~~~~~L~s~~glv~~e 52 (292)
.+.|..++..|.. .+. .+..++|+.+|++ .++|.+++..|+.+ |++...
T Consensus 5 t~~q~~i~~~i~~~~~~~g~~ps~~elA~~lgiss~~tv~~~~~~l~~~-~~l~~~ 59 (202)
T 1jhf_A 5 TARQQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKALARK-GVIEIV 59 (202)
T ss_dssp CHHHHHHHHHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHHHHHHT-TSEEEC
T ss_pred CHHHHHHHHHHHHHHHHhCCCccHHHHHHHhCCCChHHHHHHHHHHHHC-CCceeC
Confidence 3566667766643 222 2679999999999 99999999999876 887754
No 327
>3to7_A Histone acetyltransferase ESA1; MYST family; HET: ALY COA; 1.90A {Saccharomyces cerevisiae} SCOP: d.108.1.1 PDB: 3to6_A* 1fy7_A* 1mja_A* 1mjb_A* 3to9_A* 1mj9_A*
Probab=30.51 E-value=62 Score=29.55 Aligned_cols=53 Identities=9% Similarity=0.142 Sum_probs=38.3
Q ss_pred HHHHHHhccC-CCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeChh
Q psy10346 7 EKILKYLDTN-PPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELTGE 64 (292)
Q Consensus 7 ~~iL~~L~~~-~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LTeE 64 (292)
..|+..|.+. ..++..++++.+|+.+++|+.++..| |+++...-. ..+.+|++
T Consensus 196 ~~i~~~L~~~~~~isi~~is~~Tgi~~~Dii~tL~~l----~~l~~~kg~-~~i~~~~~ 249 (276)
T 3to7_A 196 DTLITLLVEHQKEITIDEISSMTSMTTTDILHTAKTL----NILRYYKGQ-HIIFLNED 249 (276)
T ss_dssp HHHHHHHHHTCSEEEHHHHHHHHCBCHHHHHHHHHHT----TCEEEETTE-EEEECCHH
T ss_pred HHHHHHHHhcCCceeHHHHHHHhCCCHHHHHHHHHHC----CCEEEeCCc-EEEEECHH
Confidence 3567777543 35788999999999999999998888 577764433 44566654
No 328
>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*
Probab=30.04 E-value=48 Score=28.81 Aligned_cols=41 Identities=20% Similarity=0.230 Sum_probs=34.0
Q ss_pred HHHHHHHHhccCCC--CChHHHHHhcCCCHHHHHHHHHHhhcc
Q psy10346 5 LTEKILKYLDTNPP--VDTLDLAKLFNEDHQKVVGGMKSIETL 45 (292)
Q Consensus 5 ~e~~iL~~L~~~~~--~~~~ela~~~~~~~~~v~~~~~~L~s~ 45 (292)
.=++.|+.|.+.+. ++|.++|+..|++...|-+.+..+.+.
T Consensus 17 ~Y~r~l~~l~~~g~~~isS~ela~~~gv~~~qiRkDls~fg~~ 59 (212)
T 3keo_A 17 LYYRIFKRFNTDGIEKASSKQIADALGIDSATVRRDFSYFGEL 59 (212)
T ss_dssp HHHHHHHHHHHTTCCEECHHHHHHHHTSCHHHHHHHHHTTGGG
T ss_pred HHHHHHHHHHHCCCeEECHHHHHHHHCCCHHHHHHHHHHHhhc
Confidence 34677888876554 789999999999999999999888765
No 329
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=29.89 E-value=43 Score=25.39 Aligned_cols=37 Identities=24% Similarity=0.209 Sum_probs=29.7
Q ss_pred HHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHH
Q psy10346 4 DLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKS 41 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~ 41 (292)
.-...|+..|...+ +...++|...|++...|.+++..
T Consensus 7 ~R~~~I~~~l~~~~-~ti~dlA~~~gVS~~TVsR~L~~ 43 (93)
T 2l0k_A 7 ERTIKIGKYIVETK-KTVRVIAKEFGVSKSTVHKDLTE 43 (93)
T ss_dssp HHHHHHHHHHHHHC-CCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcC-CCHHHHHHHHCCCHHHHHHHHcC
Confidence 44567888887655 78899999999999999888743
No 330
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=29.87 E-value=38 Score=31.72 Aligned_cols=37 Identities=11% Similarity=0.112 Sum_probs=28.2
Q ss_pred CCCCCCCChHHHHHHHHHHHhhhCCceecCCCCccccc
Q psy10346 214 SLPSGHLHPLMKVRAEFRQIFLDMGFTEMPTNNFVESS 251 (292)
Q Consensus 214 ~~~~g~~Hpl~~~~~~i~~if~~mGF~e~~~~~~Ves~ 251 (292)
...+........+.+.++++|...||.++.+ |.+|..
T Consensus 31 d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~t-P~le~~ 67 (373)
T 3rac_A 31 DGYPDFAKRRRAVETRLLSFVEDAGYEPVTS-GLFEYV 67 (373)
T ss_dssp CCCTTHHHHHHHHHHHHHHHHHHTTCEECCC-CSEEEH
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHcCCeEEEC-CceeeH
Confidence 3344445558889999999999999999964 777643
No 331
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=28.39 E-value=53 Score=25.38 Aligned_cols=101 Identities=9% Similarity=0.003 Sum_probs=60.0
Q ss_pred HHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeChhHHHHhhcCChHHHHHhhcCC
Q psy10346 5 LTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELTGEGNQVKDNGSHEVLVFNNVPS 84 (292)
Q Consensus 5 ~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LTeEG~~yl~~GlPE~rl~~~l~~ 84 (292)
...+|+..+.. ......+++..+|++...+..+++.|... |.|.- .....|..++-=.+++ ..+...+.+
T Consensus 8 l~~~i~~~~~~-~p~~~~~la~~~~~~~~~~~~~l~~l~~~-G~l~~--i~~~~~~~~~~~~~~~------~~l~~~~~~ 77 (121)
T 2pjp_A 8 IWQKAEPLFGD-EPWWVRDLAKETGTDEQAMRLTLRQAAQQ-GIITA--IVKDRYYRNDRIVEFA------NMIRDLDQE 77 (121)
T ss_dssp HHHHHGGGCSS-SCEEHHHHHHHTTCCHHHHHHHHHHHHHT-TSEEE--EETTEEEEHHHHHHHH------HHHHHHHHH
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHhCCCHHHHHHHHHHHHHC-CCEEE--ecCCceECHHHHHHHH------HHHHHHHHH
Confidence 44556666654 33466899999999999999999999987 65432 2333444443322222 234444444
Q ss_pred C-CCChHHHhhcCC---chhhHHH-HHHHcCCeecc
Q psy10346 85 E-GIGQKELLATFP---NAKVGFS-KAMAKGWISLD 115 (292)
Q Consensus 85 ~-~~~~~el~~~~~---~~~ig~~-~a~k~gwi~i~ 115 (292)
+ .+++.++++.+. ...|.+- +.=+.|+.+..
T Consensus 78 ~~~it~ae~Rd~lg~sRK~ai~lLE~~Dr~g~TrR~ 113 (121)
T 2pjp_A 78 CGSTCAADFRDRLGVGRKLAIQILEYFDRIGFTRRR 113 (121)
T ss_dssp HSSEEHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCCccHHHHHHHHCCcHHHHHHHHHHHhhcCCeEee
Confidence 3 488888887642 2333333 33445776553
No 332
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=27.89 E-value=62 Score=25.07 Aligned_cols=44 Identities=9% Similarity=0.143 Sum_probs=32.4
Q ss_pred ChHHHHHhhc-CC-CCCChHHHhhcC----CchhhHHHHHHHcCCeeccc
Q psy10346 73 SHEVLVFNNV-PS-EGIGQKELLATF----PNAKVGFSKAMAKGWISLDK 116 (292)
Q Consensus 73 lPE~rl~~~l-~~-~~~~~~el~~~~----~~~~ig~~~a~k~gwi~i~~ 116 (292)
.++.+++..| .. +++++.+|.+.+ +...-.+..+.++|||....
T Consensus 47 ~~~~~iL~~L~~~~~~~~~~ela~~l~i~~~tvs~~l~~Le~~Gli~r~~ 96 (160)
T 3boq_A 47 LAKFDAMAQLARNPDGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVVKAM 96 (160)
T ss_dssp HHHHHHHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC-
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeec
Confidence 4577788888 33 568999998874 34555678889999998753
No 333
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=27.76 E-value=56 Score=29.07 Aligned_cols=51 Identities=6% Similarity=0.017 Sum_probs=43.9
Q ss_pred HHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeee
Q psy10346 4 DLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLS 55 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~ 55 (292)
..+..||.+....+.++.++++..+|++......++..|... |++=++...
T Consensus 154 ~D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~-GllwvD~q~ 204 (234)
T 3cuq_A 154 MDHTVVLQLAEKNGYVTVSEIKASLKWETERARQVLEHLLKE-GLAWLDLQA 204 (234)
T ss_dssp HHHHHHHHHHTTTSEECHHHHHHHHTCCHHHHHHHHHHHHHH-TSCEEESSS
T ss_pred hHHHHHHHHHHhcCcCcHHHHHHHhCCCHHHHHHHHHHHHhC-CCEEEeCCC
Confidence 566778888887788899999999999999999999999987 999887543
No 334
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=27.12 E-value=1.1e+02 Score=21.71 Aligned_cols=40 Identities=15% Similarity=0.116 Sum_probs=30.7
Q ss_pred HHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhcc
Q psy10346 4 DLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETL 45 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~ 45 (292)
+.|.+||..+.. + .+..++|+.+|++...|-..+..+..+
T Consensus 24 ~~e~~vl~l~~~-g-~s~~eIA~~l~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 24 PRERDILKLIAQ-G-LPNKMIARRLDITESTVKVHVKHMLKK 63 (82)
T ss_dssp HHHHHHHHHHTT-T-CCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-C-CCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 567888887643 2 577999999999999888777766543
No 335
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=26.74 E-value=99 Score=22.64 Aligned_cols=40 Identities=13% Similarity=0.120 Sum_probs=32.5
Q ss_pred HHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhcc
Q psy10346 4 DLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETL 45 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~ 45 (292)
..|.+||..+..+ .+..++|..+|++...|-..+..+..+
T Consensus 32 ~rE~~Vl~l~~~G--~s~~eIA~~L~iS~~TV~~~~~~i~~K 71 (90)
T 3ulq_B 32 PRECLILQEVEKG--FTNQEIADALHLSKRSIEYSLTSIFNK 71 (90)
T ss_dssp HHHHHHHHHHHTT--CCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC--CCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 6788999988733 467999999999999988888777654
No 336
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q 3u5g_Z
Probab=26.42 E-value=85 Score=24.72 Aligned_cols=45 Identities=16% Similarity=0.068 Sum_probs=36.4
Q ss_pred HHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEE
Q psy10346 6 TEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIV 51 (292)
Q Consensus 6 e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~ 51 (292)
-.+|++-+..-..+++..+++.+++.-+-.-.+++.|+++ |+|..
T Consensus 47 ~dkl~KEVpk~KlITpsvlseRlkI~gSLAR~aLreL~~k-GlIk~ 91 (108)
T 3u5c_Z 47 YDRILKEVPTYRYVSVSVLVDRLKIGGSLARIALRHLEKE-GIIKP 91 (108)
T ss_dssp HHHHHHHCSSCSSBSHHHHHHTTCCCTTHHHHHHHHHSSS-SSCEE
T ss_pred HHHHHHHccCCeEEeHHHhhhhhhhhHHHHHHHHHHHHHC-CCEEE
Confidence 3455555555556899999999999998889999999987 98875
No 337
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=25.32 E-value=82 Score=27.70 Aligned_cols=59 Identities=8% Similarity=-0.015 Sum_probs=46.7
Q ss_pred HHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeee----EEEEEeChhHHHHh
Q psy10346 7 EKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLS----HKIWELTGEGNQVK 69 (292)
Q Consensus 7 ~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~----~~~~~LTeEG~~yl 69 (292)
.++|..+.-+.+++-.++++..|++.. +.++.|..+ |+|....+. -..|.+|++-..|+
T Consensus 103 LEtLaiIAy~QPITR~eI~~irGv~~~---~~v~~Lle~-gLI~e~Gr~~~~Gp~ly~tT~~Fl~~f 165 (219)
T 2z99_A 103 LETLAVVAYRQPVTRARVSAVRGVNVD---AVMRTLLAR-GLITEVGTDADTGAVTFATTELFLERL 165 (219)
T ss_dssp HHHHHHHHHHCSEEHHHHHHHHTSCCH---HHHHHHHHT-TSEEEEEECTTTCCEEEEECHHHHHHH
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCCCHH---HHHHHHHHC-CCEEEccccCCCCCeEEEECHHHHHHh
Confidence 457777777778888999999999874 678888887 999986543 36899999888776
No 338
>2ra5_A Putative transcriptional regulator; beta structure, UTRA domain, structural genomics, PSI-2, protein structure initiative; HET: SRT; 2.40A {Streptomyces coelicolor A3} SCOP: d.190.1.2
Probab=25.09 E-value=21 Score=31.17 Aligned_cols=37 Identities=14% Similarity=0.137 Sum_probs=5.4
Q ss_pred ChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEE
Q psy10346 20 DTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHK 57 (292)
Q Consensus 20 ~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~ 57 (292)
.-.++|+.+|++...|-+++..|++. |+|......-.
T Consensus 42 se~~La~~~~vSr~tvr~Al~~L~~~-G~i~~~~g~G~ 78 (247)
T 2ra5_A 42 NEIELAARLGLSRPTVRQAIQSLVDK-GLLVRRRGVGT 78 (247)
T ss_dssp ---------------------------CEEEEEC----
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHC-CCEEEEcCcee
Confidence 44789999999999999999999987 99986555433
No 339
>3nxq_A Angiotensin-converting enzyme; dicarboxy zinc metallopeptidase, hydrolase, hydrolase-hydrol inhibitor complex; HET: RX4 NAG FUC BMA P6G PG4; 1.99A {Homo sapiens} PDB: 2xyd_A* 2c6n_A* 2c6f_A*
Probab=24.86 E-value=37 Score=34.48 Aligned_cols=223 Identities=16% Similarity=0.241 Sum_probs=105.8
Q ss_pred HHHHHHHHHhccCCC--CChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeChhHHHHh-hcCChHHHHHh
Q psy10346 4 DLTEKILKYLDTNPP--VDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELTGEGNQVK-DNGSHEVLVFN 80 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~--~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LTeEG~~yl-~~GlPE~rl~~ 80 (292)
+..+|.|..|...+. .+.+++.+. ..+++.+..+-+. +-|....-...++.|-.+=..++ ....++.|..-
T Consensus 86 ~~~~R~l~~l~~~g~~~l~~~~~~e~-----n~l~s~m~~iy~~-akvc~~~g~~~cl~L~pdL~~im~~SrD~~er~~a 159 (629)
T 3nxq_A 86 PQLRRIIGAVRTLGSANLPLAKRQQY-----NALLSQMSRIYST-AKVCLPQKTATCWSLDPDLTNILASSRSYAMLLFA 159 (629)
T ss_dssp HHHHHHHHHHTCCGGGGSCHHHHHHH-----HHHHHHHHHHHHH-CEEEC---CCCEEETTTHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHHHHHhhCccCCCHHHHHHH-----HHHHHHHHHHhhc-eEEecCCCCcccccchhHHHHHHhhCCCHHHHHHH
Confidence 566778888876553 233333322 4566666666554 44433122224677744455566 58899998654
Q ss_pred hcC--C-CCCChHHHhhcCCchhhHHHHHHHcCCeecccCcceeec---cCCCchHHHHHHHHHHhccCCCCCChhhHHh
Q psy10346 81 NVP--S-EGIGQKELLATFPNAKVGFSKAMAKGWISLDKATGKVLR---KVDSVTDELQAHLKLIANNEYDKVPEANKVD 154 (292)
Q Consensus 81 ~l~--~-~~~~~~el~~~~~~~~ig~~~a~k~gwi~i~~~~g~v~~---~~~~~~d~~~~~L~~i~~~~~~~l~~~~~~~ 154 (292)
... . .|..++.+-.. -..+.=..|..+|+-.. |-.-+ ..+.....+.++...|.-- -..+..
T Consensus 160 W~~wr~~~g~~l~~~y~~--~V~LrneaAk~~Gf~d~----~e~wR~~Ye~~~~~~~~e~l~~~i~PL------y~~Lha 227 (629)
T 3nxq_A 160 WEGWHNAAGIPLKPLYED--FTALSNEAYKQDGFTDT----GAYWRSWYNSPTFEDDLEHLYQQLEPL------YLNLHA 227 (629)
T ss_dssp HHHHHHHHHHHHHHHHHH--HHHHHHHHHHTTTCSSH----HHHHHHTTCCTTHHHHHHHHHHHHHHH------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHcCCCCH----HHHHHHhcCHHHHHHHHHHHHHHHhhH------HHHHHH
Confidence 332 1 12222222111 12222234666676322 11111 1122233333333333200 012333
Q ss_pred hhcccceeeEEEEEEEEecCccccccccccc-cccCcccccCCCeeccccCCCcccCCCCCCCCC---------CCChHH
Q psy10346 155 YKKRKLLQEVTIKSFLLKKGPEFSTTIQKPE-TELTPEMIASGSWKTLNFKPYNFDAMGISLPSG---------HLHPLM 224 (292)
Q Consensus 155 LkkRkLv~~~~~~~~~v~~g~~~~~~~~~~~-t~LT~eml~sg~w~~~~fk~y~~~~~~~~~~~g---------~~Hpl~ 224 (292)
..|++|.... |++... ....+ ..|--.|- .-+|.+. |++..|-+.-..- ...| .
T Consensus 228 ~vR~~L~~~Y---------g~~~i~-~~g~iPaHLlgnmw-~q~W~~~----yd~~~Pf~~~~~~dvt~~m~~qg~t~-~ 291 (629)
T 3nxq_A 228 FVRRALHRRY---------GDRYIN-LRGPIPAHLLGDMW-AQSWENI----YDMVVPFPDKPNLDVTSTMLQQGWQA-T 291 (629)
T ss_dssp HHHHHHHHHH---------CTTTCC-TTSCEETTSSSSTT-SCCCGGG----HHHHCSCTTSCCCCCHHHHHHHTCCH-H
T ss_pred HHHHHHHHhc---------cccccC-CCCCcChhhccchh-hhchhhh----cccccCCCCCCcccchHHHHHcCCCH-H
Confidence 4455543321 322211 11111 34444443 3457654 4443333221110 1122 5
Q ss_pred HHHHHHHHHhhhCCceecCCCCccccceeccccCCCCCCCCC
Q psy10346 225 KVRAEFRQIFLDMGFTEMPTNNFVESSFWNFDALFQPQQHPA 266 (292)
Q Consensus 225 ~~~~~i~~if~~mGF~e~~~~~~Ves~f~NFD~L~~PqdHPA 266 (292)
++.+...+.|.+|||..| ..+||++|.+--|.+.+.
T Consensus 292 ~mf~~ae~ff~sLGl~~~------~~~Fw~~sl~~kp~d~~~ 327 (629)
T 3nxq_A 292 HMFRVAEEFFTSLELSPM------PPEFWEGSMLEKPADGRE 327 (629)
T ss_dssp HHHHHHHHHHHHTTCCCC------CHHHHHHCBCSCCSSSCC
T ss_pred HHHHHHHHHHHHcCCCcC------ChHHHHHHHHcCCCCCCC
Confidence 678889999999999754 368999999999988443
No 340
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=24.73 E-value=10 Score=37.76 Aligned_cols=33 Identities=3% Similarity=-0.137 Sum_probs=29.3
Q ss_pred CccccceeccccCCCCC-CCCCCCCCCceeecCC
Q psy10346 246 NFVESSFWNFDALFQPQ-QHPARDAHDTFFVTDP 278 (292)
Q Consensus 246 ~~Ves~f~NFD~L~~Pq-dHPAR~~~DTfyl~~~ 278 (292)
..|.+...|||++.++- +|.+++..||||++..
T Consensus 147 ~~v~~vh~~fds~~v~l~NPis~e~~~~~~~~~~ 180 (534)
T 2du3_A 147 YLIAEVLDVDDITAVKILDEVFPEFKELKPISST 180 (534)
T ss_dssp TTTTSSSCSGGGSHHHHHHTTCTTTTTCCCEEEE
T ss_pred ccccchhcccccceeeecCCCChhhccccccccc
Confidence 45789999999999987 8999999999999864
No 341
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=24.71 E-value=23 Score=32.79 Aligned_cols=36 Identities=14% Similarity=0.297 Sum_probs=29.1
Q ss_pred CCCCCCChHHHHHHHHHHHhhhCCceecCCCCccccc
Q psy10346 215 LPSGHLHPLMKVRAEFRQIFLDMGFTEMPTNNFVESS 251 (292)
Q Consensus 215 ~~~g~~Hpl~~~~~~i~~if~~mGF~e~~~~~~Ves~ 251 (292)
..+...+....+.+.++++|...||.++.+ |.+|..
T Consensus 31 ~lP~~~~~~~~i~~~i~~~~~~~Gy~eI~t-P~le~~ 66 (344)
T 1z7m_A 31 MTLNQVKSLRQIEGRLRKLFSLKNYQEVMP-PSFEYT 66 (344)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCEECCC-CSEEEH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCEEecC-cccCcH
Confidence 344556678999999999999999999974 877664
No 342
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=24.68 E-value=90 Score=25.71 Aligned_cols=41 Identities=12% Similarity=0.129 Sum_probs=32.8
Q ss_pred cHHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhcc
Q psy10346 3 SDLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETL 45 (292)
Q Consensus 3 ~~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~ 45 (292)
+..|.+||..|..+ .+..++|..++++...|-..+..|..|
T Consensus 151 T~rE~~vL~~l~~g--~s~~eIa~~l~is~~TV~~hi~~l~~K 191 (225)
T 3c3w_A 151 TDQERTLLGLLSEG--LTNKQIADRMFLAEKTVKNYVSRLLAK 191 (225)
T ss_dssp CHHHHHHHHHHHTT--CCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCC--CCHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 35688899998755 567899999999988888888877754
No 343
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=24.30 E-value=68 Score=26.77 Aligned_cols=59 Identities=8% Similarity=-0.008 Sum_probs=45.5
Q ss_pred HHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeee-----EEEEEeChhHHHHh
Q psy10346 7 EKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLS-----HKIWELTGEGNQVK 69 (292)
Q Consensus 7 ~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~-----~~~~~LTeEG~~yl 69 (292)
.++|..+.-+.+++-.++++..|++ +.+.+..|..+ |+|...... -..|.+|++-.+|.
T Consensus 97 LEtLaiIay~qPiTR~eI~~irGv~---~~~~v~~L~e~-glI~e~g~~~~~GRp~ly~tT~~fL~~F 160 (162)
T 1t6s_A 97 LEVLAVVAWHQPVTKGEIQQIRGAS---PDYSIDRLLAR-GLIEVRGRADSPGRPLQYGTTEVFLDLF 160 (162)
T ss_dssp HHHHHHHHHHCSEEHHHHHHHHTCC---CCSHHHHHHHT-TSEEEEEECSSTTCCEEEEECHHHHHHT
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCCC---HHHHHHHHHHC-CCEEEccccCCCCCCeEEEECHHHHHhc
Confidence 3477777767788889999999998 55778888887 999974433 46899998877664
No 344
>2j0p_A HEMS, hemin transport protein HEMS; conformational changes, HAEM, iron, trans ION transport, proteobacteria, iron transport; HET: HEM 12P; 1.7A {Yersinia enterocolitica} SCOP: e.62.1.1 PDB: 2j0r_A*
Probab=24.09 E-value=73 Score=29.86 Aligned_cols=38 Identities=24% Similarity=0.292 Sum_probs=29.9
Q ss_pred CCcHHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHH
Q psy10346 1 MASDLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGG 38 (292)
Q Consensus 1 m~~~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~ 38 (292)
|++++..++..+++++......++|..+|++.-+++.+
T Consensus 1 ~~~~l~~~~~~~~~~~P~~~~rd~A~~lgvSEaelv~a 38 (345)
T 2j0p_A 1 MSKSIYEQYLQAKADNPGKYARDLATLMGISEAELTHS 38 (345)
T ss_dssp ---CHHHHHHHHHHTCTTCCHHHHHHHTTSCHHHHHHH
T ss_pred CchHHHHHHHHHHHhCcCCcHHHHHHHcCCCHHHHHHh
Confidence 78888999999998888888999999999987766554
No 345
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=23.95 E-value=1.5e+02 Score=20.10 Aligned_cols=40 Identities=8% Similarity=0.017 Sum_probs=29.7
Q ss_pred HHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhcc
Q psy10346 4 DLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETL 45 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~ 45 (292)
+.|..||..+. ...+..++|..+|++...|-..+.....+
T Consensus 19 ~~e~~vl~l~~--~g~s~~eIA~~l~is~~tV~~~~~r~~~k 58 (79)
T 1x3u_A 19 ERERQVLSAVV--AGLPNKSIAYDLDISPRTVEVHRANVMAK 58 (79)
T ss_dssp HHHHHHHHHHT--TTCCHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 56777887763 23577999999999998888777666543
No 346
>3eqx_A FIC domain containing transcriptional regulator; FIC family protein, structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.60A {Shewanella oneidensis}
Probab=23.86 E-value=77 Score=29.68 Aligned_cols=44 Identities=11% Similarity=0.053 Sum_probs=36.2
Q ss_pred HHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEE
Q psy10346 7 EKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIV 51 (292)
Q Consensus 7 ~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~ 51 (292)
.+++..|-.++.++..++++..|++...+.+++..|... |+++-
T Consensus 300 ~~ll~~l~~~p~~t~~~~~~~~~~S~~TA~r~L~~L~e~-GiL~~ 343 (373)
T 3eqx_A 300 HELVQVIFEQPYCRIQNLVESGLAKRQTASVYLKQLCDI-GVLEE 343 (373)
T ss_dssp HHHHHHHHHCSEEEHHHHHHTSSSCHHHHHHHHHHHHHT-TSCEE
T ss_pred HHHHHHHHHCCCccHHHHHHHhCcCHHHHHHHHHHHHHC-CcEEE
Confidence 356677766666777889999999999999999999987 98864
No 347
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=23.38 E-value=31 Score=33.12 Aligned_cols=27 Identities=26% Similarity=0.417 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhhhCCceecCCCCcccc
Q psy10346 223 LMKVRAEFRQIFLDMGFTEMPTNNFVES 250 (292)
Q Consensus 223 l~~~~~~i~~if~~mGF~e~~~~~~Ves 250 (292)
...+.+.++++|...||.++.+ |.+|.
T Consensus 29 ~~~i~~~l~~~~~~~Gy~~i~t-P~~E~ 55 (465)
T 3net_A 29 ELYLLDTIRRVYESYGFTPIET-PAVER 55 (465)
T ss_dssp HHHHHHHHHHHHHHTTCEECCC-CSEEE
T ss_pred HHHHHHHHHHHHHHcCCEEeec-ccccc
Confidence 6778899999999999999974 76654
No 348
>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*
Probab=23.35 E-value=76 Score=27.27 Aligned_cols=39 Identities=15% Similarity=0.124 Sum_probs=32.5
Q ss_pred HHHHHHHhccCCC--CChHHHHHhcCCCHHHHHHHHHHhhc
Q psy10346 6 TEKILKYLDTNPP--VDTLDLAKLFNEDHQKVVGGMKSIET 44 (292)
Q Consensus 6 e~~iL~~L~~~~~--~~~~ela~~~~~~~~~v~~~~~~L~s 44 (292)
=+++|+.|.+.+. ++|.+||+..|++...|-+.+..+-.
T Consensus 14 y~r~l~~l~~~g~~~iss~~l~~~~~~~~~~iRkdls~~g~ 54 (211)
T 2dt5_A 14 YLRILEELEAQGVHRTSSEQLGGLAQVTAFQVRKDLSYFGS 54 (211)
T ss_dssp HHHHHHHHHHTTCCEECHHHHHHHHTSCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCcEECHHHHHHHhCCCHHHeechHHHHHH
Confidence 3578888876654 78999999999999999999998853
No 349
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=23.24 E-value=1.2e+02 Score=22.08 Aligned_cols=54 Identities=15% Similarity=0.212 Sum_probs=41.4
Q ss_pred HHHHHHHHhcc--CCCCChHHHHHhcCC-CHHHHHHHHHHhhccCCcEEEeeeeEEEE
Q psy10346 5 LTEKILKYLDT--NPPVDTLDLAKLFNE-DHQKVVGGMKSIETLGEYLIVEPLSHKIW 59 (292)
Q Consensus 5 ~e~~iL~~L~~--~~~~~~~ela~~~~~-~~~~v~~~~~~L~s~~glv~~e~~~~~~~ 59 (292)
+.++++..+.. .+.++..++|..++. ..-.+-.++.=|++- |+|+-..+....|
T Consensus 15 lt~kFi~l~~~~~~~~i~l~~aa~~L~v~~kRRiYDI~NVLe~i-gli~K~~k~~~~W 71 (76)
T 1cf7_A 15 LTTKFVSLLQEAKDGVLDLKLAADTLAVRQKRRIYDITNVLEGI-GLIEKKSKNSIQW 71 (76)
T ss_dssp HHHHHHHHHHHSSTTEEEHHHHHHHTTTCCTHHHHHHHHHHHHH-TSEEEEETTEEEE
T ss_pred HHHHHHHHHHhCCCCcCcHHHHHHHhCCccceehhhHHHHHhHh-cceeecCCCcEEE
Confidence 45677777754 445788999999999 888888888889987 9998665555444
No 350
>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*
Probab=23.05 E-value=79 Score=27.26 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=33.7
Q ss_pred HHHHHHHHhccCCC--CChHHHHHhcCCCHHHHHHHHHHhhcc
Q psy10346 5 LTEKILKYLDTNPP--VDTLDLAKLFNEDHQKVVGGMKSIETL 45 (292)
Q Consensus 5 ~e~~iL~~L~~~~~--~~~~ela~~~~~~~~~v~~~~~~L~s~ 45 (292)
.=+++|+.|.+.+. ++|.++|+..|++...|-+.+..+-..
T Consensus 18 ~Y~r~l~~l~~~g~~~iss~~l~~~~~~~~~~iRkdls~fg~~ 60 (215)
T 2vt3_A 18 LYYRFLKNLHASGKQRVSSAELSDAVKVDSATIRRDFSYFGAL 60 (215)
T ss_dssp HHHHHHHHHHHTTCCEECHHHHHHHHCCCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHcCCcEECHHHHHHHhCCCHHHeechHHHHHHh
Confidence 34678888876654 789999999999999999999998543
No 351
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=22.87 E-value=1.1e+02 Score=22.42 Aligned_cols=40 Identities=13% Similarity=0.111 Sum_probs=30.2
Q ss_pred HHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhcc
Q psy10346 4 DLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETL 45 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~ 45 (292)
..|++||..+. .+ .+..++|..+|++...|-..+..+..+
T Consensus 30 ~~e~~vl~l~~-~g-~s~~eIA~~l~is~~tV~~~l~r~~~k 69 (95)
T 3c57_A 30 DQERTLLGLLS-EG-LTNKQIADRMFLAEKTVKNYVSRLLAK 69 (95)
T ss_dssp HHHHHHHHHHH-TT-CCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cC-CCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 66788888773 33 467999999999998887777666543
No 352
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=22.58 E-value=1.3e+02 Score=24.55 Aligned_cols=41 Identities=12% Similarity=0.233 Sum_probs=34.4
Q ss_pred cHHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhcc
Q psy10346 3 SDLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETL 45 (292)
Q Consensus 3 ~~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~ 45 (292)
+..|.+||..|..+ .+..++|..++++...|-..+..|..|
T Consensus 161 t~rE~~vL~~l~~g--~s~~~Ia~~l~~s~~Tv~~~i~~l~~K 201 (225)
T 3klo_A 161 TKREQQIIKLLGSG--ASNIEIADKLFVSENTVKTHLHNVFKK 201 (225)
T ss_dssp CHHHHHHHHHHTTT--CCHHHHHHHTTCCHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHcC--CCHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 35788999999754 467899999999999999999999865
No 353
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=21.55 E-value=65 Score=24.47 Aligned_cols=44 Identities=11% Similarity=0.209 Sum_probs=32.5
Q ss_pred ChHHHHHhhcCCCCCChHHHhhcC--C--chhhHHHHHHHcCCeeccc
Q psy10346 73 SHEVLVFNNVPSEGIGQKELLATF--P--NAKVGFSKAMAKGWISLDK 116 (292)
Q Consensus 73 lPE~rl~~~l~~~~~~~~el~~~~--~--~~~ig~~~a~k~gwi~i~~ 116 (292)
.++.+++..|...++++.+|.+.+ + ...-.+..+.++|||....
T Consensus 38 ~~~~~iL~~l~~~~~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~r~~ 85 (146)
T 3tgn_A 38 NTQEHILMLLSEESLTNSELARRLNVSQAAVTKAIKSLVKEGMLETSK 85 (146)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEecc
Confidence 467778899987669999998874 2 3455677888899998754
No 354
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=21.54 E-value=1.2e+02 Score=22.70 Aligned_cols=40 Identities=15% Similarity=0.170 Sum_probs=30.8
Q ss_pred HHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhcc
Q psy10346 4 DLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETL 45 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~ 45 (292)
+.|.+||..+..+ .+..++|..+|++...|-..+..+..+
T Consensus 37 ~re~~Vl~l~~~G--~s~~EIA~~L~iS~~TV~~~l~ri~~K 76 (99)
T 1p4w_A 37 PKESEVLRLFAEG--FLVTEIAKKLNRSIKTISSQKKSAMMK 76 (99)
T ss_dssp HHHHHHHHHHHHT--CCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC--CCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 5678888877533 467999999999998888777776543
No 355
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=21.23 E-value=4e+02 Score=23.02 Aligned_cols=128 Identities=13% Similarity=0.088 Sum_probs=0.0
Q ss_pred HHHHHHHHHhccCCC-CChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeChhHHHHhhcCChHHHHHhhc
Q psy10346 4 DLTEKILKYLDTNPP-VDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWELTGEGNQVKDNGSHEVLVFNNV 82 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~-~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LTeEG~~yl~~GlPE~rl~~~l 82 (292)
+.+..|...|...+. ..+.+++...|++.+.+...+..|.+.++++.+.......| ++.+--+-+ ..++...|
T Consensus 2 ~~~~~l~~~L~~~~~~~~~~~l~~~~~l~~~~l~~~l~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~-----~~~l~~~L 75 (258)
T 1lva_A 2 SPEKILAQIIQEHREGLDWQEAATRASLSLEETRKLLQSMAAAGQVTLLRVENDLYA-ISTERYQAW-----WQAVTRAL 75 (258)
T ss_dssp CHHHHHHHHHHTCTTCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEE-EEHHHHHHH-----HHHHHHHH
T ss_pred CHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHHHHhCCCEEEeccCCccEE-EcHHHHHHH-----HHHHHHHH
Q ss_pred C--------CCCCChHHHhhcCC------chhhHHHHHHHcCCeecccCcceeeccC--CCchHHHHHHHHHH
Q psy10346 83 P--------SEGIGQKELLATFP------NAKVGFSKAMAKGWISLDKATGKVLRKV--DSVTDELQAHLKLI 139 (292)
Q Consensus 83 ~--------~~~~~~~el~~~~~------~~~ig~~~a~k~gwi~i~~~~g~v~~~~--~~~~d~~~~~L~~i 139 (292)
. ..|++.++|...+. .+..-+..+.+.|.|...++ .|.... ....+..++....|
T Consensus 76 ~~~H~~~P~~~G~~~~~L~~~~~~~~~~~l~~~ll~~l~~~g~l~~~~~--~v~l~~h~~~~~~~~~~~~~~i 146 (258)
T 1lva_A 76 EEFHSRYPLRPGLAREELRSRYFSRLPARVYQALLEEWSREGRLQLAAN--TVALAGFTPSFSETQKKLLKDL 146 (258)
T ss_dssp HHHHHHCTTSSCEEHHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEETT--EEEETTCCCCCCHHHHHHHHHH
T ss_pred HHHHHhCCCccCCCHHHHHHhccccCCHHHHHHHHHHHHHCCCEEecCC--EEeCCCCccCCCHHHHHHHHHH
No 356
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=20.65 E-value=83 Score=27.91 Aligned_cols=51 Identities=10% Similarity=-0.025 Sum_probs=43.4
Q ss_pred HHHHHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEeeee
Q psy10346 4 DLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLS 55 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e~~~ 55 (292)
..+..||......+.++.++++..+|++....-.++..|... |++=++...
T Consensus 167 ~D~~~vLe~a~~~g~vt~~~L~~~lgW~~~Ra~~~L~~l~~~-G~lwvD~q~ 217 (233)
T 1u5t_A 167 SDQTKILEICSILGYSSISLLKANLGWEAVRSKSALDEMVAN-GLLWIDYQG 217 (233)
T ss_dssp TTHHHHHHTTTTTSCCBHHHHHHHHCCCSHHHHHHHHHHHHT-TSSEEECSS
T ss_pred hHHHHHHHHHHhcCcCcHHHHHHHhCCCHHHHHHHHHHHHHC-CCEEEeCCC
Confidence 456788888877888899999999999999999999999986 998887543
No 357
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_8
Probab=20.47 E-value=92 Score=25.75 Aligned_cols=53 Identities=4% Similarity=0.010 Sum_probs=37.9
Q ss_pred HHHHHhccC-CCCChHHHHHhcCCCHHHHHHHHHHhhccCCcEEEe--eeeEEEEEe
Q psy10346 8 KILKYLDTN-PPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVE--PLSHKIWEL 61 (292)
Q Consensus 8 ~iL~~L~~~-~~~~~~ela~~~~~~~~~v~~~~~~L~s~~glv~~e--~~~~~~~~L 61 (292)
+|++-+..- ..+++..+++.+++.-+-.-.+|+.|+++ |+|..- ......|.-
T Consensus 52 KL~KEVpk~gKlITpsvlseRlkI~gSLARkaLreL~~k-GlIk~V~kh~~q~IYTr 107 (143)
T 2xzm_8 52 SIINNPSKVGKVLTVSTVVEKLKVNGSLARQLMRTMADR-KLVEKVAKNGNQWVYSV 107 (143)
T ss_dssp HHHTCCTTSCSEECHHHHHHHHCBCHHHHHHHHHHHHHT-TSEEEEEEETTEEEEEE
T ss_pred HHHHHhcccceeecHHHHHHHhcchHHHHHHHHHHHHHC-CCEEEEecCCCeEEEec
Confidence 344444334 45788999999999999999999999997 988753 233444443
No 358
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=20.27 E-value=1.4e+02 Score=23.76 Aligned_cols=35 Identities=6% Similarity=0.079 Sum_probs=28.5
Q ss_pred HHHHHHhccCCCCChHHHHHhcCCCHHHHHHHHHHhh
Q psy10346 7 EKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIE 43 (292)
Q Consensus 7 ~~iL~~L~~~~~~~~~ela~~~~~~~~~v~~~~~~L~ 43 (292)
.+|+..|..+ ....++|+.+|++...|.+..+.|.
T Consensus 66 ~eV~klL~~G--~syreIA~~~g~S~aTIsRv~r~L~ 100 (119)
T 3kor_A 66 LQVAKMIKQG--YTYATIEQESGASTATISRVKRSLQ 100 (119)
T ss_dssp HHHHHHHHHT--CCHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcC--CCHHHHHHHHCCCHHHHHHHHHHHh
Confidence 5678888655 4678999999999999988888885
No 359
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=20.06 E-value=1.6e+02 Score=25.46 Aligned_cols=53 Identities=9% Similarity=0.078 Sum_probs=38.6
Q ss_pred HHHHHHHHHhccCCCCChHHHHH----hcC--CCHHHHHHHHHHhhccCCcEEEeeeeEEEEEeC
Q psy10346 4 DLTEKILKYLDTNPPVDTLDLAK----LFN--EDHQKVVGGMKSIETLGEYLIVEPLSHKIWELT 62 (292)
Q Consensus 4 ~~e~~iL~~L~~~~~~~~~ela~----~~~--~~~~~v~~~~~~L~s~~glv~~e~~~~~~~~LT 62 (292)
..++.+|..+.. +. +..+++. ..| ++...+..++..|... |+|.... ..|.++
T Consensus 290 ~~~~~~l~~la~-g~-~~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~-gli~~~~---~~y~f~ 348 (357)
T 2fna_A 290 KRYLNIMRTLSK-CG-KWSDVKRALELEEGIEISDSEIYNYLTQLTKH-SWIIKEG---EKYCPS 348 (357)
T ss_dssp HHHHHHHHHHTT-CB-CHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHT-TSEEESS---SCEEES
T ss_pred HHHHHHHHHHHc-CC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhC-CCEEecC---CEEEec
Confidence 456788888876 45 6677763 457 8889999999999987 9987542 345554
Done!