RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10346
(292 letters)
>gnl|CDD|240361 PTZ00326, PTZ00326, phenylalanyl-tRNA synthetase alpha chain;
Provisional.
Length = 494
Score = 340 bits (873), Expect = e-115
Identities = 131/293 (44%), Positives = 176/293 (60%), Gaps = 8/293 (2%)
Query: 1 MASDLTEKILKYLDTNPP-VDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIW 59
IL L++ V++L LA+ N DHQKVVG +KS+E+ Y+ E W
Sbjct: 3 QKELEENTILSKLESENEIVNSLALAESLNIDHQKVVGAIKSLESAN-YITTEMKKSNTW 61
Query: 60 ELTGEGNQVKDNGSHEVLVFNNVPSEGIGQKELLATF--PNAKVGFSKAMAKGWISLDKA 117
LT EG NGS E ++ + GI + + A +G AM K WI L+K
Sbjct: 62 TLTEEGEDYLKNGSPEYRLWQKLKEGGISKADDAKKLGGKVADIGLGNAMKKKWIKLNKG 121
Query: 118 TGKV---LRKVDSVTDELQAHLKLIANN-EYDKVPEANKVDYKKRKLLQEVTIKSFLLKK 173
KV + VDSV D ++ LK++A + +K+ + KKRKL IK F++ K
Sbjct: 122 DKKVFLSRKLVDSVVDTVRLLLKIVAKGSQAEKIDSKELKELKKRKLATLEKIKYFVVTK 181
Query: 174 GPEFSTTIQKPETELTPEMIASGSWKTLNFKPYNFDAMGISLPSGHLHPLMKVRAEFRQI 233
GP+F+ I+K T+LT EM+ +GSWK FK YNF+A+G + G+LHPL+KVR EFR+I
Sbjct: 182 GPKFAKEIKKQITDLTQEMLLNGSWKNAEFKEYNFNALGKKIGGGNLHPLLKVRREFREI 241
Query: 234 FLDMGFTEMPTNNFVESSFWNFDALFQPQQHPARDAHDTFFVTDPKTSETEFF 286
L+MGF EMPTN +VESSFWNFDALFQPQQHPARDA DTFF++ P+TS+
Sbjct: 242 LLEMGFEEMPTNRYVESSFWNFDALFQPQQHPARDAQDTFFLSKPETSKVNDL 294
>gnl|CDD|215458 PLN02853, PLN02853, Probable phenylalanyl-tRNA synthetase alpha
chain.
Length = 492
Score = 305 bits (782), Expect = e-101
Identities = 128/287 (44%), Positives = 171/287 (59%), Gaps = 9/287 (3%)
Query: 2 ASDLTEKILKYLDTNPPV-DTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWE 60
A+ E +L L N + D+ A DH +VVG +KS+ Y+ + + + W
Sbjct: 1 AAMAEEALLGALSNNEEISDSGQFAASHGLDHNEVVGVIKSLHGFR-YVDAQDIKRETWV 59
Query: 61 LTGEGNQVKDNGSHEVLVFNNVPSEG-IGQKELLATFPNA--KVGFSKAMAKGWISLDKA 117
LT EG + GS EV +F VP+EG I + EL A +GF +AM W+ +
Sbjct: 60 LTEEGKKYAAEGSPEVQLFAAVPAEGSISKDELQKKLDPAVFDIGFKQAMKNKWLEMG-G 118
Query: 118 TGKVLRKVDSVTDELQAHLKLIANNEYDKVPEANKVDYKKRK-LLQEVTIKSFLLKKGPE 176
+V RKV V DE++ L I + +V + + KKR+ L+ T K + +KKGP
Sbjct: 119 KPQVSRKVQHVEDEVKELLLAIQEGK--EVDDKDIDALKKRRKLITLETWKGYSIKKGPN 176
Query: 177 FSTTIQKPETELTPEMIASGSWKTLNFKPYNFDAMGISLPSGHLHPLMKVRAEFRQIFLD 236
++ +K T+LT EM+ SG WK L FK YNF+A+G GHLHPL+KVR +FR+IFL
Sbjct: 177 YAPERKKAATDLTREMLQSGDWKDLEFKEYNFNALGAPPEGGHLHPLLKVRQQFRKIFLQ 236
Query: 237 MGFTEMPTNNFVESSFWNFDALFQPQQHPARDAHDTFFVTDPKTSET 283
MGF EMPTNNFVESSFWNFDALFQPQQHPARD+HDTFF+ P T+
Sbjct: 237 MGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLKAPATTRQ 283
>gnl|CDD|235239 PRK04172, pheS, phenylalanyl-tRNA synthetase subunit alpha;
Provisional.
Length = 489
Score = 181 bits (461), Expect = 2e-53
Identities = 96/294 (32%), Positives = 141/294 (47%), Gaps = 29/294 (9%)
Query: 8 KILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGE--YLIVEPLSHKIWELTGEG 65
K+LK L +LA+ + V M++ E L E + VE +++ LT EG
Sbjct: 10 KVLKALKELKEATLEELAEKLGLPPEAV---MRAAEWLEEKGLVKVEERVEEVYVLTEEG 66
Query: 66 NQVKDNGSHEVLVFNNVPSEG---IGQ-KELLATFPNAKVGFSKAMAKGWISLDKATGKV 121
+ + G E + N + G + + KE L + KGW ++K GKV
Sbjct: 67 KKYAEEGLPERRLLNALKDGGEVSLDELKEALLDKKEVGIALGNLARKGWAKIEK--GKV 124
Query: 122 LRKVDSVTDELQAHLKLIANNEYDKVPEANKV---DYKKRKLLQEVTIKSF--------- 169
+ K D+ D + LK +A + +++ E + + KKRKL++E
Sbjct: 125 ILKPDAYEDPEEKALKALAEGDKEELSEEDLKVLKELKKRKLVEEKERTERSVELTDAGL 184
Query: 170 -LLKKGPEFSTTIQKPETELTPEMIASGSWKTLNFKPYNFDAMGISLPSGHLHPLMKVRA 228
LLK+G E I T+LTPE++ SG WK F+PYN A + G HP +
Sbjct: 185 ELLKEGIELKEEI----TQLTPELLKSGEWKEKEFRPYNVKAPPPKIYPGKKHPYREFID 240
Query: 229 EFRQIFLDMGFTEMPTNNFVESSFWNFDALFQPQQHPARDAHDTFFVTDPKTSE 282
E R I ++MGF EM VE+ FWNFDALFQPQ HPAR+ DTF++ P +
Sbjct: 241 EVRDILVEMGFEEM-KGPLVETEFWNFDALFQPQDHPAREMQDTFYLKYPGIGD 293
>gnl|CDD|223095 COG0016, PheS, Phenylalanyl-tRNA synthetase alpha subunit
[Translation, ribosomal structure and biogenesis].
Length = 335
Score = 139 bits (353), Expect = 3e-39
Identities = 54/179 (30%), Positives = 82/179 (45%), Gaps = 14/179 (7%)
Query: 99 AKVGFSKAMAKGWISLDKATGKVLRKVDSVTDELQAHLKLIANNEYDKVPEANKVDYKKR 158
+ + KG +++ A+ +L L+ + K + KK
Sbjct: 2 VMIALGRLAKKGIAAIELAS------------DLLKALEELKVKYLGKKGVLTDL-LKKL 48
Query: 159 KLLQEVTIKSFLLKKGPEFSTTIQKPETELTPEMIASGSWKTLNFKPYNFDAMGISLPSG 218
L + + + E ++ TELTPE+ A+G W+ L F+ + G + G
Sbjct: 49 GKLSPLEERKEVGALINELKKEVEDAITELTPELEAAGLWERLAFEKIDVTLPGRRIYPG 108
Query: 219 HLHPLMKVRAEFRQIFLDMGFTEMPTNNFVESSFWNFDALFQPQQHPARDAHDTFFVTD 277
LHPL + E IFL MGFTE+ +E+ F+NFDAL PQ HPARD DTF++ D
Sbjct: 109 SLHPLTQTIEEIEDIFLGMGFTEVEGPE-IETDFYNFDALNIPQDHPARDMQDTFYLKD 166
>gnl|CDD|232988 TIGR00468, pheS, phenylalanyl-tRNA synthetase, alpha subunit. Most
phenylalanyl-tRNA synthetases are heterodimeric, with 2
alpha (pheS) and 2 beta (pheT) subunits. This model
describes the alpha subunit, which shows some similarity
to class II aminoacyl-tRNA ligases. Mitochondrial
phenylalanyl-tRNA synthetase is a single polypeptide
chain, active as a monomer, and similar to this chain
rather than to the beta chain, but excluded from this
model. An interesting feature of the alignment of all
sequences captured by this model is a deep split between
non-spirochete bacterial examples and all other
examples; supporting this split is a relative deletion
of about 50 residues in the former set between two
motifs well conserved throughout the alignment [Protein
synthesis, tRNA aminoacylation].
Length = 293
Score = 119 bits (301), Expect = 6e-32
Identities = 52/126 (41%), Positives = 67/126 (53%), Gaps = 1/126 (0%)
Query: 152 KVDYKKRKLLQEVTIKSFLLKKGPEFSTTIQKPETELTPEMIASGSWKTLNFKPYNFDAM 211
K K+ L + K L E +Q T+L PE+ ++G W L F+ Y+
Sbjct: 3 KDLLKQLGKLTKEETKPALGALINEVKIELQDELTKLKPELESAGLWSKLKFETYDVSLP 62
Query: 212 GISLPSGHLHPLMKVRAEFRQIFLDMGFTEMPTNNFVESSFWNFDALFQPQQHPARDAHD 271
G + G LHPL +V E R IFL +GFTE VE+ FWNFDAL PQ HPARD D
Sbjct: 63 GTKIYPGSLHPLTRVIDEIRDIFLGLGFTEET-GPEVETDFWNFDALNIPQDHPARDMQD 121
Query: 272 TFFVTD 277
TF++ D
Sbjct: 122 TFYIKD 127
>gnl|CDD|216483 pfam01409, tRNA-synt_2d, tRNA synthetases class II core domain (F).
Other tRNA synthetase sub-families are too dissimilar
to be included. This family includes only
phenylalanyl-tRNA synthetases. This is the core
catalytic domain.
Length = 245
Score = 109 bits (276), Expect = 8e-29
Identities = 39/80 (48%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 205 PYNFDAMGISLPSGHLHPLMKVRAEFRQIFLDMGFTEMPTNNFVESSFWNFDALFQPQQH 264
PY+ G + G LHPL +V E R IFL MGF E+ VES F+NFDAL PQ H
Sbjct: 1 PYDVTLPGRRIEPGGLHPLTRVLEEIRDIFLSMGFEEVE-GPEVESDFYNFDALNIPQDH 59
Query: 265 PARDAHDTFFVTDPKTSETE 284
PARD DTF++ P E
Sbjct: 60 PARDMQDTFYLKKPLKEEDR 79
>gnl|CDD|238277 cd00496, PheRS_alpha_core, Phenylalanyl-tRNA synthetase (PheRS)
alpha chain catalytic core domain. PheRS belongs to
class II aminoacyl-tRNA synthetases (aaRS) based upon
its structure and the presence of three characteristic
sequence motifs. This domain is primarily responsible
for ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. While class II aaRSs generally
aminoacylate the 3'-OH ribose of the appropriate tRNA,
PheRS is an exception in that it attaches the amino acid
at the 2'-OH group, like class I aaRSs. PheRS is an
alpha-2/ beta-2 tetramer.
Length = 218
Score = 98.0 bits (245), Expect = 1e-24
Identities = 33/58 (56%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 221 HPLMKVRAEFRQIFLDMGFTEMPTNNFVESSFWNFDALFQPQQHPARDAHDTFFVTDP 278
HPL KV E IF+ MGFTE+ VE+ F+NFDAL PQ HPARD DTF++ DP
Sbjct: 1 HPLNKVIEEIEDIFVSMGFTEV-EGPEVETDFYNFDALNIPQDHPARDMQDTFYINDP 57
>gnl|CDD|234780 PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha;
Validated.
Length = 339
Score = 78.2 bits (194), Expect = 1e-16
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 212 GISLPSGHLHPLMKVRAEFRQIFLDMGFTEMPTNNFVESSFWNFDALFQPQQHPARDAHD 271
G + G LHP+ + E IF+ MGF +E+ ++NF+AL P+ HPARD D
Sbjct: 99 GRRIELGSLHPITQTIEEIEDIFVGMGFEVA-EGPEIETDYYNFEALNIPKDHPARDMQD 157
Query: 272 TFFVTDPK 279
TF++ D
Sbjct: 158 TFYIDDGL 165
>gnl|CDD|215422 PLN02788, PLN02788, phenylalanine-tRNA synthetase.
Length = 402
Score = 35.9 bits (83), Expect = 0.019
Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 13/84 (15%)
Query: 202 NFKPYNFDAMGISLPSGHLHPLMKVRAEFRQIFLDMGFTEMPTNNF--------VESSFW 253
N + F +G+ L HPL ++ F E +N F + S+
Sbjct: 49 NVPDHIFSKIGMQLHRRPDHPLGILKNAIYDYF-----DENYSNKFKKFDDLSPIVSTKQ 103
Query: 254 NFDALFQPQQHPARDAHDTFFVTD 277
NFD + P H +R +DT++V
Sbjct: 104 NFDDVLVPPDHVSRSYNDTYYVDA 127
>gnl|CDD|235754 PRK06253, PRK06253, O-phosphoseryl-tRNA synthetase; Reviewed.
Length = 529
Score = 32.6 bits (75), Expect = 0.23
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 213 ISLPSGHLHPLMKVRAEFRQIFLDMGFTEM 242
+ G HP+ R+ +L MGF EM
Sbjct: 39 LKPSYGKPHPVYDTIERLREAYLRMGFEEM 68
>gnl|CDD|129561 TIGR00469, pheS_mito, phenylalanyl-tRNA synthetase, mitochondrial.
Unlike all other known phenylalanyl-tRNA synthetases,
the mitochondrial form demonstrated from yeast is
monomeric. It is similar to but longer than the alpha
subunit (PheS) of the alpha 2 beta 2 form found in
Bacteria, Archaea, and eukaryotes, and shares the
characteristic motifs of class II aminoacyl-tRNA
ligases. This model models the experimental example from
Saccharomyces cerevisiae (designated MSF1) and its
orthologs from other eukaryotic species [Protein
synthesis, tRNA aminoacylation].
Length = 460
Score = 32.4 bits (73), Expect = 0.26
Identities = 24/107 (22%), Positives = 39/107 (36%), Gaps = 9/107 (8%)
Query: 179 TTIQKPETELTPEMIASGSWKTLNFKPYNFDAMGISLPSGHLHPLMKVRAEFRQIF--LD 236
+ ++ P E+ A+ T N + HPL +R + F D
Sbjct: 1 SPLKPPHLEINGIKYATDGQ-TTNVTDKIIKLTDANKHLKEDHPLGIIRDLIEKKFNGAD 59
Query: 237 MGFTEMPT----NNF--VESSFWNFDALFQPQQHPARDAHDTFFVTD 277
P +NF V ++ NFD L P HP R D +++ +
Sbjct: 60 NNQRGNPLFKIFDNFKPVVTTMENFDNLGFPADHPGRQKSDCYYINE 106
>gnl|CDD|236592 PRK09616, pheT, phenylalanyl-tRNA synthetase subunit beta;
Reviewed.
Length = 552
Score = 32.1 bits (74), Expect = 0.36
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 206 YNFDAMGISLPS----GHLHPLMKVRAEFRQIFLDMGFTEMPTNNFVESS 251
Y ++ + LP G LHP+ K+ R + + +GF E+ NF +S
Sbjct: 340 YGYNNLEPELPKVFTIGRLHPIEKLERAIRDLMVGLGFQEV--MNFTLTS 387
>gnl|CDD|176165 cd08476, PBP2_CrgA_like_7, The C-terminal substrate binding domain
of an uncharacterized LysR-type transcriptional
regulator CrgA-like, contains the type 2 periplasmic
binding fold. This CD represents the substrate binding
domain of an uncharacterized LysR-type transcriptional
regulator (LTTR) CrgA-like 7. The LTTRs are acting as
both auto-repressors and activators of target promoters,
controlling operons involved in a wide variety of
cellular processes such as amino acid biosynthesis, CO2
fixation, antibiotic resistance, degradation of aromatic
compounds, nodule formation of nitrogen-fixing bacteria,
and synthesis of virulence factors, to name a few. In
contrast to the tetrameric form of other LTTRs, CrgA
from Neisseria meningitides assembles into an octameric
ring, which can bind up to four 63-bp DNA
oligonucleotides. Phylogenetic cluster analysis showed
that the CrgA-like regulators form a subclass of the
LTTRs that function as octamers. The CrgA is an
auto-repressor of its own gene and activates the
expression of the mdaB gene which coding for an
NADPH-quinone reductase and that its action is increased
by MBL (alpha-methylene-gamma-butyrolactone), an inducer
of NADPH-quinone oxidoreductase. The structural
topology of this substrate-binding domain is most
similar to that of the type 2 periplasmic binding
proteins (PBP2), which are responsible for the uptake of
a variety of substrates such as phosphate, sulfate,
polysaccharides, lysine/arginine/ornithine, and
histidine. The PBP2 bind their ligand in the cleft
between these domains in a manner resembling a Venus
flytrap. After binding their specific ligand with high
affinity, they can interact with a cognate membrane
transport complex comprised of two integral membrane
domains and two cytoplasmically located ATPase domains.
This interaction triggers the ligand translocation
across the cytoplasmic membrane energized by ATP
hydrolysis.
Length = 197
Score = 29.9 bits (68), Expect = 1.1
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 5/33 (15%)
Query: 213 ISLPSGHLHPLMKVRAEFRQIF----LDMGFTE 241
+SLP L+ V A F Q + LD+ F++
Sbjct: 5 VSLPLVG-GLLLPVLAAFMQRYPEIELDLDFSD 36
>gnl|CDD|223150 COG0072, PheT, Phenylalanyl-tRNA synthetase beta subunit
[Translation, ribosomal structure and biogenesis].
Length = 650
Score = 29.9 bits (68), Expect = 1.6
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 217 SGHLHPLMKVRAEFRQIFLDMGFTEMPTNNFVESSFWNFDALFQPQQ 263
G L PL K R + R+ + +GF E+ T + S + +
Sbjct: 347 RGGLTPLQKFRRKVRRALVGLGFQEVITYSLT-SPEEAKLFGLENDE 392
>gnl|CDD|236379 PRK09104, PRK09104, hypothetical protein; Validated.
Length = 464
Score = 29.9 bits (68), Expect = 1.7
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 186 TELTPEMIASGSWKTLNFKPYNF-DAMGISLPSG 218
EL PE++A WK L F F +G+S+P+G
Sbjct: 261 EELPPEILAQ--WKALGFTAEAFLGPVGLSIPAG 292
>gnl|CDD|129319 TIGR00215, lpxB, lipid-A-disaccharide synthase. Lipid-A precursor
biosynthesis producing lipid A disaccharide in a
condensation reaction. transcribed as part of an operon
including lpxA [Cell envelope, Biosynthesis and
degradation of surface polysaccharides and
lipopolysaccharides].
Length = 385
Score = 29.9 bits (67), Expect = 1.8
Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 7/67 (10%)
Query: 190 PEMIASGSWKTLNFKPYNFDAMGISLPSGHLHPLMKVRAEFRQIFLDMGFTEMPTNNFVE 249
P M A G + + MG+ G L L+K+R E Q+ + + V
Sbjct: 43 PRMAAEG--CEVLYSMEELSVMGLREVLGRLGRLLKIRKEVVQLAK-----QAKPDLLVG 95
Query: 250 SSFWNFD 256
+F+
Sbjct: 96 IDAPDFN 102
>gnl|CDD|232989 TIGR00471, pheT_arch, phenylalanyl-tRNA synthetase, beta subunit.
Every known example of the phenylalanyl-tRNA synthetase,
except the monomeric form of mitochondrial, is an alpha
2 beta 2 heterotetramer. The beta subunits break into
two subfamilies that are considerably different in
sequence, length, and pattern of gaps. This model
represents the subfamily that includes the beta subunit
from eukaryotic cytosol, the Archaea, and spirochetes
[Protein synthesis, tRNA aminoacylation].
Length = 551
Score = 29.7 bits (67), Expect = 1.9
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 213 ISLPSGHLHPLMKVRAEFRQIFLDMGFTEMPTN 245
+ G L PL KV R+I + +GF E+
Sbjct: 354 LINTIGRLKPLNKVSDIIREIMVGLGFQEVIPL 386
>gnl|CDD|224759 COG1846, MarR, Transcriptional regulators [Transcription].
Length = 126
Score = 27.9 bits (62), Expect = 2.9
Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 5/93 (5%)
Query: 8 KILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSH----KIWELTG 63
++L L + +LA+ D V +K +E G + + LT
Sbjct: 26 QVLLALYEAGGITVKELAERLGLDRSTVTRLLKRLEDKG-LIERLRDPEDRRAVLVRLTE 84
Query: 64 EGNQVKDNGSHEVLVFNNVPSEGIGQKELLATF 96
+G ++ + G+ ++EL
Sbjct: 85 KGRELLEQLLPAAQELLAEILAGLSEEELRKLL 117
>gnl|CDD|224935 COG2024, COG2024, Phenylalanyl-tRNA synthetase alpha subunit
(archaeal type) [Translation, ribosomal structure and
biogenesis].
Length = 536
Score = 28.6 bits (64), Expect = 4.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 218 GHLHPLMKVRAEFRQIFLDMGFTEM 242
G HPL + R+ +L MGF+EM
Sbjct: 44 GKPHPLYETIQRLREAYLRMGFSEM 68
>gnl|CDD|129562 TIGR00470, sepS, O-phosphoserine--tRNA ligase. This family of
archaeal proteins resembles known phenylalanyl-tRNA
synthetase alpha chains. Recently, it was shown to act
in a proposed pathway of tRNA(Cys) indirect
aminoacylation, resulting in Cys biosynthesis from
O-phosphoserine, in certain archaea. It charges
tRNA(Cys) with O-phosphoserine. The pscS gene product
converts the phosphoserine to Cys [Amino acid
biosynthesis, Serine family, Protein synthesis, tRNA
aminoacylation].
Length = 533
Score = 28.3 bits (63), Expect = 4.8
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 218 GHLHPLMKVRAEFRQIFLDMGFTEM 242
G HPLM+ R+ +L MGF+EM
Sbjct: 44 GKPHPLMETIERLREAYLRMGFSEM 68
>gnl|CDD|222253 pfam13597, NRDD, Anaerobic ribonucleoside-triphosphate reductase.
Length = 542
Score = 28.3 bits (64), Expect = 5.3
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 136 LKLIANNEYDKVPEANKVDYKKRKLLQE 163
L L A + + E ++ D KRKL++E
Sbjct: 290 LALEAKGDEEFFEELDRYDLAKRKLIEE 317
>gnl|CDD|215482 PLN02892, PLN02892, isocitrate lyase.
Length = 570
Score = 28.3 bits (63), Expect = 5.3
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
Query: 92 LLATFPNAK-VGFSKAMAKGWISLDKATGKVLRKVDSVTDEL--QAHLKLIANNEYDKVP 148
L AT P + + +A+ A GK ++ ++ DE QA L + D +
Sbjct: 272 LGATNPALRGKPLATLLAEA-----MAAGKSGAELQAIEDEWLAQAQLMTFSEAVADAIK 326
Query: 149 EANKVDYKKRKLLQE 163
N + +KR+ L E
Sbjct: 327 SMNISENEKRRRLNE 341
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.135 0.396
Gapped
Lambda K H
0.267 0.0797 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,086,243
Number of extensions: 1438703
Number of successful extensions: 1269
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1251
Number of HSP's successfully gapped: 32
Length of query: 292
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 196
Effective length of database: 6,679,618
Effective search space: 1309205128
Effective search space used: 1309205128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.4 bits)