RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10346
(292 letters)
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation,
tRNA-binding, DNA-binding domain, four-helix
acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A
{Homo sapiens}
Length = 508
Score = 312 bits (800), Expect = e-104
Identities = 153/287 (53%), Positives = 205/287 (71%), Gaps = 6/287 (2%)
Query: 1 MA-SDLTEKILKYLD-TNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKI 58
MA + E +L+ L+ ++ +D+ +LA +HQ VVG +KS++ LGE + E S K
Sbjct: 1 MADGQVAELLLRRLEASDGGLDSAELAAELGMEHQAVVGAVKSLQALGEVIEAELRSTKH 60
Query: 59 WELTGEGNQVKDNGSHEVLVFNNVPSEGIGQKELLATFPNAKVGFSKAMAKGWISLDKAT 118
WELT EG ++ GSHE VF ++P EG+ Q EL+ P+ KVGFSKAM+ WI +DK+
Sbjct: 61 WELTAEGEEIAREGSHEARVFRSIPPEGLAQSELMR-LPSGKVGFSKAMSNKWIRVDKSA 119
Query: 119 G---KVLRKVDSVTDELQAHLKLIANNEYDKVPEANKVDYKKRKLLQEVTIKSFLLKKGP 175
+V R VDS+ DE+Q L+L+ + +K+ E + + +KRKLL EVT+K++ + KG
Sbjct: 120 ADGPRVFRVVDSMEDEVQRRLQLVRGGQAEKLGEKERSELRKRKLLAEVTLKTYWVSKGS 179
Query: 176 EFSTTIQKPETELTPEMIASGSWKTLNFKPYNFDAMGISLPSGHLHPLMKVRAEFRQIFL 235
FST+I K ETEL+PEMI+SGSW+ FKPYNF A G+ SGHLHPL+KVR++FRQIFL
Sbjct: 180 AFSTSISKQETELSPEMISSGSWRDRPFKPYNFLAHGVLPDSGHLHPLLKVRSQFRQIFL 239
Query: 236 DMGFTEMPTNNFVESSFWNFDALFQPQQHPARDAHDTFFVTDPKTSE 282
+MGFTEMPT+NF+ESSFWNFDALFQPQQHPARD HDTFF+ DP +
Sbjct: 240 EMGFTEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRDPAEAL 286
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 102 bits (255), Expect = 1e-24
Identities = 22/107 (20%), Positives = 33/107 (30%), Gaps = 6/107 (5%)
Query: 167 KSFLLKKGPEFSTTIQKPE-TELTPEMIASGSWKT---LNFKPYNFDAMGISLPSGHLHP 222
P S ++ E E+ + +T + K N I G HP
Sbjct: 7 HHHSSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHP 66
Query: 223 LMKVRAEFRQIFLDMGFTEMPTNNFVESSFWNFDALFQPQQHPARDA 269
+ RQ +L MGF E V+ + F P+ D
Sbjct: 67 VNDTIENLRQAYLRMGFEEYINPVIVD--ERDIYKQFGPEAMAVLDR 111
Score = 53.1 bits (127), Expect = 5e-08
Identities = 19/185 (10%), Positives = 48/185 (25%), Gaps = 22/185 (11%)
Query: 119 GKVLRKVDSVTDELQAHL--------KLIANNEYDKVPEANKVDYKKRKLLQEVT--IKS 168
G + K + + + LI + ++ K + K + + ++
Sbjct: 17 GSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHPVNDTIENLRQ 76
Query: 169 FLL------KKGP---EFSTTIQKPETELTPEMIASGSWKTLNFKPYNFDAMGISLPSGH 219
L P + ++ E + L IS
Sbjct: 77 AYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEKISQIEKL 136
Query: 220 LHPLMKVRAEFRQIFLDMGFTEMPTNNFVESSFWNFDALFQPQQHPARDAHDTFFVTDPK 279
+ + + ++I + ++ + N AL + + D F
Sbjct: 137 GIKVSEHKESLQKILHGYKKGTLDGDD-LVLEISN--ALEISSEMGLKILEDVFPEFKDL 193
Query: 280 TSETE 284
T+ +
Sbjct: 194 TAVSS 198
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 685
Score = 101 bits (254), Expect = 2e-24
Identities = 22/99 (22%), Positives = 33/99 (33%), Gaps = 6/99 (6%)
Query: 175 PEFSTTIQKPE-TELTPEMIASGSWKT---LNFKPYNFDAMGISLPSGHLHPLMKVRAEF 230
P S ++ E E+ + +T + K N I G HP+
Sbjct: 15 PRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHPVNDTIENL 74
Query: 231 RQIFLDMGFTEMPTNNFVESSFWNFDALFQPQQHPARDA 269
RQ +L MGF E V+ + F P+ D
Sbjct: 75 RQAYLRMGFEEYINPVIVD--ERDIYKQFGPEAMAVLDR 111
Score = 49.2 bits (117), Expect = 7e-07
Identities = 17/159 (10%), Positives = 43/159 (27%), Gaps = 14/159 (8%)
Query: 137 KLIANNEYDKVPEANKVDYKKRKLLQEVT--IKSFLLKKGP---------EFSTTIQKPE 185
LI + ++ K + K + + ++ L+ G + ++
Sbjct: 43 DLIKAKKINESYPRIKPVFGKTHPVNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFG 102
Query: 186 TELTPEMIASGSWKTLNFKPYNFDAMGISLPSGHLHPLMKVRAEFRQIFLDMGFTEMPTN 245
E + L IS + + + ++I + +
Sbjct: 103 PEAMAVLDRCFYLAGLPRPDVGLSDEKISQIEKLGIKVSEHKESLQKILHGYKKGTLDGD 162
Query: 246 NFVESSFWNFDALFQPQQHPARDAHDTFFVTDPKTSETE 284
+ + N AL + + D F T+ +
Sbjct: 163 D-LVLEISN--ALEISSEMGLKILEDVFPEFKDLTAVSS 198
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 665
Score = 98.9 bits (246), Expect = 2e-23
Identities = 22/107 (20%), Positives = 33/107 (30%), Gaps = 6/107 (5%)
Query: 167 KSFLLKKGPEFSTTIQKPE-TELTPEMIASGSWKT---LNFKPYNFDAMGISLPSGHLHP 222
P S ++ E E+ + +T + K N I G HP
Sbjct: 7 HHHSSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHP 66
Query: 223 LMKVRAEFRQIFLDMGFTEMPTNNFVESSFWNFDALFQPQQHPARDA 269
+ RQ +L MGF E V+ + F P+ D
Sbjct: 67 VNDTIENLRQAYLRMGFEEYINPVIVD--ERDIYKQFGPEAMAVLDR 111
Score = 50.0 bits (119), Expect = 4e-07
Identities = 19/185 (10%), Positives = 48/185 (25%), Gaps = 22/185 (11%)
Query: 119 GKVLRKVDSVTDELQAHL--------KLIANNEYDKVPEANKVDYKKRKLLQEVT--IKS 168
G + K + + + LI + ++ K + K + + ++
Sbjct: 17 GSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHPVNDTIENLRQ 76
Query: 169 FLL------KKGP---EFSTTIQKPETELTPEMIASGSWKTLNFKPYNFDAMGISLPSGH 219
L P + ++ E + L IS
Sbjct: 77 AYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEKISQIEKL 136
Query: 220 LHPLMKVRAEFRQIFLDMGFTEMPTNNFVESSFWNFDALFQPQQHPARDAHDTFFVTDPK 279
+ + + ++I + ++ + N AL + + D F
Sbjct: 137 GIKVSEHKESLQKILHGYKKGTLDGDD-LVLEISN--ALEISSEMGLKILEDVFPEFKDL 193
Query: 280 TSETE 284
T+ +
Sbjct: 194 TAVSS 198
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 648
Score = 97.7 bits (243), Expect = 5e-23
Identities = 22/107 (20%), Positives = 33/107 (30%), Gaps = 6/107 (5%)
Query: 167 KSFLLKKGPEFSTTIQKPE-TELTPEMIASGSWKT---LNFKPYNFDAMGISLPSGHLHP 222
P S ++ E E+ + +T + K N I G HP
Sbjct: 7 HHHSSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHP 66
Query: 223 LMKVRAEFRQIFLDMGFTEMPTNNFVESSFWNFDALFQPQQHPARDA 269
+ RQ +L MGF E V+ + F P+ D
Sbjct: 67 VNDTIENLRQAYLRMGFEEYINPVIVD--ERDIYKQFGPEAMAVLDR 111
Score = 49.2 bits (117), Expect = 8e-07
Identities = 19/185 (10%), Positives = 48/185 (25%), Gaps = 22/185 (11%)
Query: 119 GKVLRKVDSVTDELQAHL--------KLIANNEYDKVPEANKVDYKKRKLLQEVT--IKS 168
G + K + + + LI + ++ K + K + + ++
Sbjct: 17 GSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPVFGKTHPVNDTIENLRQ 76
Query: 169 FLL------KKGP---EFSTTIQKPETELTPEMIASGSWKTLNFKPYNFDAMGISLPSGH 219
L P + ++ E + L IS
Sbjct: 77 AYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEKISQIEKL 136
Query: 220 LHPLMKVRAEFRQIFLDMGFTEMPTNNFVESSFWNFDALFQPQQHPARDAHDTFFVTDPK 279
+ + + ++I + ++ + N AL + + D F
Sbjct: 137 GIKVSEHKESLQKILHGYKKGTLDGDD-LVLEISN--ALEISSEMGLKILEDVFPEFKDL 193
Query: 280 TSETE 284
T+ +
Sbjct: 194 TAVSS 198
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold,
RRM domain, RNA recogntion, aminoacyl-tRNA synthetase,
ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB:
3hfv_A* 3teg_A* 3tup_A
Length = 415
Score = 82.2 bits (203), Expect = 6e-18
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
Query: 212 GISLPSGHLHPLMKVRAEFRQIFLDMGFTEMPTNNF--------VESSFWNFDALFQPQQ 263
G +L + HPL ++ ++ F T F V +++ NFD+L P
Sbjct: 39 GRNLHNQQHHPLWLIKERVKEHFYKQYVGRFGTPLFSVYDNLSPVVTTWQNFDSLLIPAD 98
Query: 264 HPARDAHDTFFVTDP 278
HP+R D +++
Sbjct: 99 HPSRKKGDNYYLNRT 113
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural
genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Length = 549
Score = 81.9 bits (202), Expect = 1e-17
Identities = 23/104 (22%), Positives = 34/104 (32%), Gaps = 7/104 (6%)
Query: 170 LLKKGPEFSTTIQKPETELTPEMIASGSWKTLNF----KPYNFDAMGISLPSGHLHPLMK 225
L K + K EL + +W+ K + + G HP+M+
Sbjct: 3 LKHKRDDKMRFDIKKVLELAEKDF-ETAWRETRALIKDKHIDNKYPRLKPVYGKPHPVME 61
Query: 226 VRAEFRQIFLDMGFTEMPTNNFVESSFWNFDALFQPQQHPARDA 269
RQ +L MGF EM V+ F P+ D
Sbjct: 62 TIERLRQAYLRMGFEEMINPVIVDE--MEIYKQFGPEAMAVLDR 103
Score = 44.6 bits (105), Expect = 3e-05
Identities = 6/64 (9%), Positives = 16/64 (25%), Gaps = 3/64 (4%)
Query: 221 HPLMKVRAEFRQIFLDMGFTEMPTNNFVESSFWNFDALFQPQQHPARDAHDTFFVTDPKT 280
+ + R++ + + + F AL + + F
Sbjct: 131 DIDEEKKERLREVLHLYKKGAIDGD---DLVFEIAKALNVSNEMGLKVLETAFPEFKDLK 187
Query: 281 SETE 284
E+
Sbjct: 188 PEST 191
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA
complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB:
2du4_A 2du5_A* 2du6_A*
Length = 534
Score = 80.7 bits (199), Expect = 2e-17
Identities = 17/109 (15%), Positives = 28/109 (25%), Gaps = 15/109 (13%)
Query: 186 TELTPEMIASGSWKTLNFKPYNFDAMGI----SLPSGHLHPLMKVRAEFRQIFLDMGFTE 241
EL + +WK + G HPL R+ +L +GF+E
Sbjct: 9 RELAEKDF-EAAWKAGKEILAERSPNELYPRVGFSFGKEHPLFATIQRLREAYLSIGFSE 67
Query: 242 MPTNN----------FVESSFWNFDALFQPQQHPARDAHDTFFVTDPKT 280
+ F + D F P + +
Sbjct: 68 VVNPLIVEDVHVKKQFGREALAVLDRCFYLATLPKPNVGISAEKIRQIE 116
Score = 52.6 bits (126), Expect = 6e-08
Identities = 6/69 (8%), Positives = 17/69 (24%), Gaps = 3/69 (4%)
Query: 216 PSGHLHPLMKVRAEFRQIFLDMGFTEMPTNNFVESSFWNFDALFQPQQHPARDAHDTFFV 275
+ ++IF E+ + + S+ + L + + F
Sbjct: 114 QIEAITKREVDSKPLQEIFHRYKKGEIDGD---DLSYLIAEVLDVDDITAVKILDEVFPE 170
Query: 276 TDPKTSETE 284
+
Sbjct: 171 FKELKPISS 179
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer,
phenylalanine, aminoacyl-tRNA synthetase, ATP-binding,
cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus
haemolyticus} PDB: 2rhs_A*
Length = 294
Score = 78.8 bits (195), Expect = 3e-17
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 212 GISLPSGHLHPLMKVRAEFRQIFLDMGFT--EMPTNNFVESSFWNFDALFQPQQHPARDA 269
+ G HPL + E +FL +G+ + VE ++NF+AL P+ HPARD
Sbjct: 44 SRQISIGSKHPLTRTVEEIEDLFLGLGYEIVDGYE---VEQDYYNFEALNLPKSHPARDM 100
Query: 270 HDTFFVTD 277
D+F++TD
Sbjct: 101 QDSFYITD 108
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta
homodimer, ligase; HET: FYA; 2.50A {Thermus
thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A
1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A*
2amc_A*
Length = 350
Score = 79.2 bits (196), Expect = 4e-17
Identities = 33/75 (44%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 212 GISLPSGHLHPLMKVRAEFRQIFLDMGFT--EMPTNNFVESSFWNFDALFQPQQHPARDA 269
G SL SG LHP+ + E +IF +G+ E P VES F+NFDAL P+ HPARD
Sbjct: 92 GASLFSGGLHPITLMERELVEIFRALGYQAVEGPE---VESEFFNFDALNIPEHHPARDM 148
Query: 270 HDTFFVTDPKTSETE 284
DTF++T
Sbjct: 149 WDTFWLTGEGFRLEG 163
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation,
tRNA-binding, DNA-binding domain, four-helix
aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP;
3.02A {Escherichia coli}
Length = 327
Score = 78.7 bits (195), Expect = 5e-17
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 212 GISLPSGHLHPLMKVRAEFRQIFLDMGFT--EMPTNNFVESSFWNFDALFQPQQHPARDA 269
G + +G LHP+ + F ++GFT P +E + NFDAL P HPAR
Sbjct: 98 GRRIENGGLHPVTRTIDRIESFFGELGFTVATGPE---IEDDYHNFDALNIPGHHPARAD 154
Query: 270 HDTFFVTDPK 279
HDTF+ +
Sbjct: 155 HDTFWFDTTR 164
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 50.2 bits (119), Expect = 4e-07
Identities = 48/279 (17%), Positives = 85/279 (30%), Gaps = 78/279 (27%)
Query: 4 DLTEKILKYLDT-NPPV-DTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSHKIWEL 61
+L+ KIL L T V D L A + + E L+++ L + +L
Sbjct: 263 NLSCKIL--LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS--LLLKYLDCRPQDL 318
Query: 62 TGEGNQVKDNGSHEVLVFNNVPSEGIGQKELLATFPNAKVGFSKAMAKGW--ISLDKATG 119
EVL N I E + W ++ DK T
Sbjct: 319 -----------PREVLTTNPRRLSIIA--ESIRDGLA--------TWDNWKHVNCDKLTT 357
Query: 120 KVLRKVDSVT-DELQAHLKLIANNEYD-KVPEA-------NKVDYKKRKLLQEVTIKSFL 170
+ ++ + E + ++ +P + + ++ ++ S +
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417
Query: 171 LKKGPEFSTTI----------QKPETELTPEMIASGSWKTLNFKPYN----FDAMGISLP 216
K+ E + +I + E L ++ YN FD+ + P
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSIVDH----------YNIPKTFDSDDLIPP 467
Query: 217 S---------GHLHPLMKVR-----AEFRQIFLDMGFTE 241
GH H L + FR +FLD F E
Sbjct: 468 YLDQYFYSHIGH-H-LKNIEHPERMTLFRMVFLDFRFLE 504
Score = 29.4 bits (65), Expect = 1.5
Identities = 23/130 (17%), Positives = 45/130 (34%), Gaps = 28/130 (21%)
Query: 149 EANKVDYKKRKLL---QEVTIKSFLLKKGPEFSTTI-QKPETELTPEMIASGS------- 197
E + Y+ + +L ++ + +F K + +I K E + +I S
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEID---HIIMSKDAVSGTLR 66
Query: 198 --WKTLNFKPYNF--DAMGISLPSGHLHPLMKVRAEFRQIFLDMGFTEMPTNNFVE--SS 251
W TL K + L + + ++ E RQ M T ++E
Sbjct: 67 LFW-TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ-------PSMMTRMYIEQRDR 118
Query: 252 FWNFDALFQP 261
+N + +F
Sbjct: 119 LYNDNQVFAK 128
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.3 bits (104), Expect = 4e-05
Identities = 36/159 (22%), Positives = 60/159 (37%), Gaps = 44/159 (27%)
Query: 1 MAS--DLT-EKILKYLD-TN---PPVDTLDLAKLFNEDHQKVVGGM-KSIETLGEYLIVE 52
M S +LT E++ Y++ TN P ++++ L N VV G +S+ L L
Sbjct: 338 MLSISNLTQEQVQDYVNKTNSHLPAGKQVEIS-LVNGAKNLVVSGPPQSLYGLNLTL--- 393
Query: 53 PLSHKIWELTGEGNQVKDNGSHEVLVFNN------VP--SEGIGQKELLATFPNAKVGFS 104
K +G +Q + S L F+N P S LL A +
Sbjct: 394 ---RKAKAPSGL-DQSRIPFSERKLKFSNRFLPVASPFHS------HLLV---PASDLIN 440
Query: 105 KAMAKGWISLDKA----------TGKVLRKVD-SVTDEL 132
K + K +S + G LR + S+++ +
Sbjct: 441 KDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERI 479
Score = 42.7 bits (100), Expect = 1e-04
Identities = 36/167 (21%), Positives = 53/167 (31%), Gaps = 50/167 (29%)
Query: 72 GSHEVLVFNNVPSEGIGQKELLATFPNAKVGFSKAMAKGWISLDKATGKVL--RKVDSVT 129
GS E G+G +L T A+ +++A D +D V
Sbjct: 1625 GSQEQ---------GMG-MDLYKTSKAAQDVWNRA--------DNHFKDTYGFSILDIVI 1666
Query: 130 D---ELQAHL-----KLIANNEYDKVPEANKVD--YKKRKLLQEVTIKSFLLKKGPEFST 179
+ L H K I N Y + VD K K+ +E+ S S
Sbjct: 1667 NNPVNLTIHFGGEKGKRIREN-YSAMIFETIVDGKLKTEKIFKEINEHS--------TSY 1717
Query: 180 TIQKPE-----TELT-P-----EMIASGSWKTLNFKPYNFDAMGISL 215
T + + T+ T P E A K+ P + G SL
Sbjct: 1718 TFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSL 1764
Score = 33.5 bits (76), Expect = 0.097
Identities = 38/232 (16%), Positives = 69/232 (29%), Gaps = 80/232 (34%)
Query: 2 ASDLTEKILKYLDTN-------PPVDTLD-------------------LAKLFNEDHQKV 35
TEKI K ++ + L L
Sbjct: 1699 GKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADAT 1758
Query: 36 VGGMKSIETLGEY--LI----VEPLSHKIWELTGEGNQVKDNGSHEVLVFNNVPSEGIGQ 89
G S LGEY L V + + E+ V G + VP + +G+
Sbjct: 1759 FAG-HS---LGEYAALASLADVMSIESLV-EV------VFYRGM---TMQVAVPRDELGR 1804
Query: 90 KE--LLATFPNA-KVGFSKAMAKGWI-SLDKATGKVLRKVDSVTDELQAHLKLIAN-NEY 144
++A P FS+ + + + K TG ++ E I N N
Sbjct: 1805 SNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLV--------E-------IVNYN-- 1847
Query: 145 DKVP--------EANKVDYKKRKLLQEVTIKSFLLKKGPEFSTTIQKPETEL 188
V + +D +L + ++ + + + S ++++ E L
Sbjct: 1848 --VENQQYVAAGDLRALD-TVTNVLNFIKLQKIDIIELQK-SLSLEEVEGHL 1895
Score = 29.6 bits (66), Expect = 1.6
Identities = 17/95 (17%), Positives = 36/95 (37%), Gaps = 24/95 (25%)
Query: 1 MASDLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVV----GGMKSIETLGEYLIVEPLSH 56
++ ++E+I+ + PV + F H ++ GG + L+H
Sbjct: 471 LSGSISERIVDCI-IRLPVK-WETTTQFKATH--ILDFGPGGASGLG---------VLTH 517
Query: 57 KIWELTGEGNQVKDNGSHEVLVFNNVPSEGIGQKE 91
+ + G G +V G+ + P + G K+
Sbjct: 518 RNKD--GTGVRVIVAGT-----LDINPDDDYGFKQ 545
Score = 29.2 bits (65), Expect = 1.9
Identities = 45/332 (13%), Positives = 85/332 (25%), Gaps = 156/332 (46%)
Query: 47 EYLIVEPLSHKIWELTGEGNQVKDNGSHEVLVFNNV---PSE---------GIGQKELLA 94
+YL+ P+S + + Q+ +H V+ + P E G Q + A
Sbjct: 229 DYLLSIPISCPLIGVI----QL----AHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTA 280
Query: 95 TFPNAKVGFSKAMAKGWISLDKATGKVLR-------------------------KVD--- 126
A W S + K + ++
Sbjct: 281 VAI--------AETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNE 332
Query: 127 -------SVTD----ELQAHLKL------------IAN-NEYDKV-----PEA------- 150
S+++ ++Q ++ I+ N + P++
Sbjct: 333 GVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLT 392
Query: 151 ------------NKVDYKKRK-----------------LLQEVT--IKSFLLKKG----- 174
+++ + +RK LL + I L+K
Sbjct: 393 LRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNA 452
Query: 175 -----PEFSTT----IQKPETELTP---EMIASGS--W-KTLNFKPYNFDAMGISLPSGH 219
P + T ++ ++ + I W T FK + G SG
Sbjct: 453 KDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASG- 511
Query: 220 LHPLMKVRAE---FRQIFL---------DMGF 239
L L + R I D GF
Sbjct: 512 LGVLTHRNKDGTGVRVIVAGTLDINPDDDYGF 543
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B
O-methyl tyrosine binding, magnesium binding,
aminoacylatio esterification; HET: 0A1 ANP; 1.75A
{Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A*
2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A*
Length = 290
Score = 41.4 bits (97), Expect = 2e-04
Identities = 19/114 (16%), Positives = 32/114 (28%), Gaps = 21/114 (18%)
Query: 132 LQAHLKLIANNEYD-KVPEANKVDYKKRKLLQEVTIKSFLLKKGPEFSTTIQKPETELTP 190
H L+ + P K + ++L L G F EL
Sbjct: 7 HHHHGGLVPRGSHGASAPALTKSQTDRLEVLLN-PKDEISLNSGKPFR--------ELES 57
Query: 191 EMIASGSWKTLNFKPYNFDAMGISLPSGHLHPLMKVRAEFRQIFLDMGFTEMPT 244
E+ + + L K+ E + F+D GF E+ +
Sbjct: 58 EL-----------LSRRKKDLQQIYAEERENYLGKLEREITRFFVDRGFLEIKS 100
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation,
tRNA-binding, DNA-binding domain, four-helix
acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A
{Homo sapiens}
Length = 589
Score = 36.6 bits (85), Expect = 0.009
Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 10/81 (12%)
Query: 206 YNFDAMGISLPS----GHLHPLMKVRAEFRQIFLDMGFTEMPTNNFVESSFWNFDALFQP 261
Y ++ + ++LP + PL K+ R GFTE T S D
Sbjct: 372 YGYNNIQMTLPKTYTIANQFPLNKLTELLRHDMAAAGFTEALTFALC-SQEDIAD--KLG 428
Query: 262 QQHPARDAHDTFFVTDPKTSE 282
A A +++PKT+E
Sbjct: 429 VDISATKA---VHISNPKTAE 446
>3kat_A Nacht, LRR and PYD domains-containing protein 1; structural
genomics, PSI-2, protein structure initiative, northeast
structural genomics consortium; 3.10A {Homo sapiens}
Length = 107
Score = 28.8 bits (64), Expect = 0.83
Identities = 16/78 (20%), Positives = 31/78 (39%), Gaps = 4/78 (5%)
Query: 122 LRKVDSVTDELQAHLKLIANNEYDKVPEANKVDYKKRKLLQEVTIKSFLLKKGPEFSTTI 181
+ V+ V D+L ++++ +Y++V N + RKL K +
Sbjct: 33 VTSVEVVLDKLHG--QVLSQEQYERVLAENTRPSQMRKLFSLSQSWDRKCKD--GLYQAL 88
Query: 182 QKPETELTPEMIASGSWK 199
++ L E+ GS K
Sbjct: 89 KETHPHLIMELWEKGSKK 106
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 1.0
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 10/29 (34%)
Query: 120 KVLRKVDSVTDELQAHLKLIANNEYDKVP 148
+ L+K LQA LKL A+ D P
Sbjct: 20 QALKK-------LQASLKLYAD---DSAP 38
Score = 27.2 bits (59), Expect = 4.1
Identities = 4/19 (21%), Positives = 8/19 (42%), Gaps = 4/19 (21%)
Query: 248 VESSFWNFDALFQPQQHPA 266
+++S L+ PA
Sbjct: 25 LQASL----KLYADDSAPA 39
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor
homology domain, kinesin, motor domain,
microtubule-binding; 1.60A {Saccharomyces cerevisiae}
Length = 298
Score = 28.3 bits (62), Expect = 3.3
Identities = 8/51 (15%), Positives = 22/51 (43%)
Query: 123 RKVDSVTDELQAHLKLIANNEYDKVPEANKVDYKKRKLLQEVTIKSFLLKK 173
R++++ E + ++ A +PE DY+ + Q ++ + +
Sbjct: 13 RRLENSIIEQKGTMRCYAYVMEQNLPENLLFDYENGVITQGLSEHVYKFNR 63
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer,
phenylalanine, aminoacyl-tRNA synthetase, ATP-binding,
cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus
haemolyticus} PDB: 2rhs_B*
Length = 795
Score = 27.9 bits (63), Expect = 5.0
Identities = 6/52 (11%), Positives = 13/52 (25%), Gaps = 2/52 (3%)
Query: 214 SLPSGHLHPLMKVRAEFRQIFLDMGFTEMPTNNFVESSFWNFDALFQPQQHP 265
+ SG L ++ G + T + V ++
Sbjct: 486 EVTSGELTDRQHKTRTLKETLEGAGLNQAITYSLVSKDH--AKDFALQERPT 535
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION,
adenylate analog, deletion mutant, ligase; HET: TSB;
1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB:
1evk_A* 1fyf_A* 1kog_A*
Length = 401
Score = 27.6 bits (62), Expect = 6.1
Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 5/23 (21%)
Query: 216 PSGHLHPLMKVRAEFRQ----IF 234
PSG LH LM+VR F Q IF
Sbjct: 125 PSGSLHGLMRVRG-FTQDDAHIF 146
>4ayb_A DNA-directed RNA polymerase; transferase, multi-subunit,
transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_A
2y0s_A 2waq_A 4b1o_A 4b1p_W 2pmz_A 3hkz_A
Length = 880
Score = 27.5 bits (61), Expect = 6.6
Identities = 24/117 (20%), Positives = 47/117 (40%), Gaps = 21/117 (17%)
Query: 112 ISLDKATGKVLRKVDSVTDELQAHLKLIANNEYDKVPEANKVDYKKRKLL------QEVT 165
+ G ++ + D LQ H+ +NE +P + + + L +E
Sbjct: 249 LKESIDAGAPQLIIEDLWDLLQYHVATYFDNEIPGLPPSKHRSGRPLRTLAQRLKGKEGR 308
Query: 166 IKSFLLKKGPEFST-TIQKPETELT------PEMIASGSWKTLNF----KPYNFDAM 211
+ L K +FS+ T+ P+ ++ PE+IA +TL P+N + +
Sbjct: 309 FRGNLSGKRVDFSSRTVISPDPNISIDEVGVPEIIA----RTLTVPERITPWNIEKL 361
>2hf0_A BIle salt hydrolase; alpha, beta; 2.30A {Bifidobacterium longum}
PDB: 2hez_A
Length = 316
Score = 27.1 bits (59), Expect = 6.8
Identities = 17/121 (14%), Positives = 33/121 (27%), Gaps = 6/121 (4%)
Query: 175 PEFS--TTIQKPETELTPEMIASGSWKTLNFKPYNFDAMGISLPSGHLHPLMKVRAEFRQ 232
P F + ++ EM SW + + +P P VR +
Sbjct: 174 PTFDFHMENLRNYMCVSNEMAEPTSWGKASLTAWGAGVGMHGIPGDVSSPSRFVRVAYTN 233
Query: 233 IFLDMGFTEMPTNNFVESSFWNFDALFQPQQHPARDAHDTFF--VTDPKTSETEFFFFFY 290
E + + + + + + T F KT+ ++ Y
Sbjct: 234 AHYPQQNDEAANVSRLFHTLGSVQMVDGMAKMGDGQFERTLFTSGYSSKTN--TYYMNTY 291
Query: 291 D 291
D
Sbjct: 292 D 292
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein,
kinesin motor homology domain, karyog mitosis,
microtubules; HET: ADP EBC; 2.30A {Saccharomyces
cerevisiae} PDB: 1u0i_A
Length = 333
Score = 26.8 bits (58), Expect = 8.2
Identities = 8/51 (15%), Positives = 23/51 (45%)
Query: 123 RKVDSVTDELQAHLKLIANNEYDKVPEANKVDYKKRKLLQEVTIKSFLLKK 173
R++++ E + +++ A +PE DY+ + Q ++ + +
Sbjct: 48 RRLENSIIEQKGTMRVYAYVMEQNLPENLLFDYENGVITQGLSEHVYKFNR 98
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation,
tRNA-binding, DNA-binding domain, four-helix
aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP;
3.02A {Escherichia coli}
Length = 795
Score = 27.1 bits (61), Expect = 9.1
Identities = 10/52 (19%), Positives = 17/52 (32%), Gaps = 3/52 (5%)
Query: 214 SLPSGHLHPLMKVRAEFRQIFLDMGFTEMPTNNFVESSFWNFDALFQPQQHP 265
SL G + + D G+ E+ T +FV+ + P
Sbjct: 482 SLIMGTHREADLSLKRVKTLLNDKGYQEVITYSFVDPK---VQQMIHPGVEA 530
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.135 0.396
Gapped
Lambda K H
0.267 0.0460 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,449,644
Number of extensions: 260656
Number of successful extensions: 585
Number of sequences better than 10.0: 1
Number of HSP's gapped: 565
Number of HSP's successfully gapped: 47
Length of query: 292
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 199
Effective length of database: 4,105,140
Effective search space: 816922860
Effective search space used: 816922860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.4 bits)