RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10346
         (292 letters)



>d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha
           subunit, PheS {Thermus thermophilus [TaxId: 274]}
          Length = 266

 Score = 87.4 bits (216), Expect = 6e-21
 Identities = 31/71 (43%), Positives = 41/71 (57%), Gaps = 1/71 (1%)

Query: 212 GISLPSGHLHPLMKVRAEFRQIFLDMGFTEMPTNNFVESSFWNFDALFQPQQHPARDAHD 271
           G SL SG LHP+  +  E  +IF  +G+  +     VES F+NFDAL  P+ HPARD  D
Sbjct: 8   GASLFSGGLHPITLMERELVEIFRALGYQAVE-GPEVESEFFNFDALNIPEHHPARDMWD 66

Query: 272 TFFVTDPKTSE 282
           TF++T      
Sbjct: 67  TFWLTGEGFRL 77


>d1xmka1 a.4.5.19 (A:294-366) Z-alpha domain of dsRNA-specific
          adenosine deaminase, ADAR1 {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 73

 Score = 29.4 bits (66), Expect = 0.088
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 3  SDLTEKILKYLDTNPPVDTLDLAK 26
          +++ EKI  YL        L+LAK
Sbjct: 4  AEIKEKICDYLFNVSDSSALNLAK 27


>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp.,
           UC5319 [TaxId: 1931]}
          Length = 311

 Score = 28.6 bits (63), Expect = 0.85
 Identities = 7/51 (13%), Positives = 13/51 (25%), Gaps = 3/51 (5%)

Query: 220 LHP-LMKVRAEFRQIFLDMGFTEMPT--NNFVESSFWNFDALFQPQQHPAR 267
             P   +  AE       +G           +   + +  + F P    A 
Sbjct: 13  QSPDHARAEAEQLAWPRSLGLIRSDAAAERHLRGGYADLASRFYPHATGAD 63


>d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator
           TM0816 {Thermotoga maritima [TaxId: 2336]}
          Length = 140

 Score = 27.3 bits (60), Expect = 1.5
 Identities = 14/98 (14%), Positives = 30/98 (30%), Gaps = 8/98 (8%)

Query: 2   ASDLTE---KILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLGEYLIVEPLSH-- 56
            SD+         Y+    P    ++A+  +     V   + S+E  G  ++ E      
Sbjct: 27  ISDMKTTELYAFLYVALFGPKKMKEIAEFLSTTKSNVTNVVDSLEKRG-LVVREMDPVDR 85

Query: 57  --KIWELTGEGNQVKDNGSHEVLVFNNVPSEGIGQKEL 92
                 LT +G ++                E   +++ 
Sbjct: 86  RTYRVVLTEKGKEIFGEILSNFESLLKSVLEKFSEEDF 123


>d2ajta2 c.85.1.2 (A:1-328) L-arabinose isomerase AraA {Escherichia
           coli [TaxId: 562]}
          Length = 328

 Score = 26.7 bits (59), Expect = 3.5
 Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 119 GKVLRKVDSVTDELQAHLKLIANNEYDKVPEANKVDYKKRKLLQ----EVTIKSFLLKKG 174
           G +++ V+S++D     L     + Y   P       K++ +L+    E+ +K FL + G
Sbjct: 212 GDLVQVVNSISDGDVNALVDEYESCYTMTPATQIHGEKRQNVLEAARIELGMKRFLEQGG 271


>d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia
          coli [TaxId: 562]}
          Length = 63

 Score = 24.6 bits (54), Expect = 3.6
 Identities = 10/46 (21%), Positives = 20/46 (43%)

Query: 1  MASDLTEKILKYLDTNPPVDTLDLAKLFNEDHQKVVGGMKSIETLG 46
          +  +L   IL+ L  N      +LAK F    + +   ++ ++  G
Sbjct: 2  LIDNLDRGILEALMGNARTAYAELAKQFGVSPETIHVRVEKMKQAG 47


>d1bgca_ a.26.1.1 (A:) Granulocyte-colony stimulating factor (G-CSF)
           {Cow (Bos taurus) [TaxId: 9913]}
          Length = 165

 Score = 25.9 bits (57), Expect = 4.5
 Identities = 10/127 (7%), Positives = 32/127 (25%), Gaps = 26/127 (20%)

Query: 72  GSHEVLVFNNVPSEGIGQKELLATFPNAKVGFSKAMAKGWISLDKATGKVLRKVDSVTDE 131
               +L+ +++   GI Q  L +                           L ++      
Sbjct: 37  PEELMLLRHSL---GIPQAPLSSCSSQ---SLQLRGC-------------LNQLHGGLFL 77

Query: 132 LQAHLKLIANNEYDKVPEANKVDYKKRKLLQEVTIKSFLLKKGPEFSTTIQKPETELTPE 191
            Q  L+ +A    +  P  + +          + ++     +    +      +      
Sbjct: 78  YQGLLQALAGISPELAPTLDTLQLDVTDFATNIWLQM----EDLGAAPA---VQPTQGAM 130

Query: 192 MIASGSW 198
              + ++
Sbjct: 131 PTFTSAF 137


>d1a9xb2 c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthetase,
           small subunit C-terminal domain {Escherichia coli
           [TaxId: 562]}
          Length = 228

 Score = 26.3 bits (57), Expect = 4.6
 Identities = 10/65 (15%), Positives = 16/65 (24%), Gaps = 3/65 (4%)

Query: 204 KPYNFDAMGISLPSGHLHPLMKVRAEFRQIFLDMGFTEMPTNNFVESSFWNFDALFQPQQ 263
           + Y++     +L  G      +    F  +  D G                      P Q
Sbjct: 14  EAYSWTQGSWTLTGGLPQAKKEDELPFHVVAYDFGAKRNILRML---VDRGCRLTIVPAQ 70

Query: 264 HPARD 268
             A D
Sbjct: 71  TSAED 75


>d1nria_ c.80.1.3 (A:) Hypothetical protein HI0754 {Haemophilus
          influenzae [TaxId: 727]}
          Length = 248

 Score = 25.9 bits (56), Expect = 5.6
 Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 10/74 (13%)

Query: 5  LTEKILKY---LDTNPPVDTLDLAKLFNEDHQKVVGGMK----SIETLGEYLIVEPLSHK 57
          +TE+       +D      TL++ +L NE+ + V   ++     I    E ++       
Sbjct: 5  ITEQRNPNSVDIDR---QSTLEIVRLMNEEDKLVPLAIESCLPQISLAVEQIVQAFQQGG 61

Query: 58 IWELTGEGNQVKDN 71
               G G   +  
Sbjct: 62 RLIYIGAGTSGRLG 75


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.135    0.396 

Gapped
Lambda     K      H
   0.267   0.0546    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,085,051
Number of extensions: 50219
Number of successful extensions: 145
Number of sequences better than 10.0: 1
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 11
Length of query: 292
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 207
Effective length of database: 1,240,546
Effective search space: 256793022
Effective search space used: 256793022
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.2 bits)