BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10347
(67 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O15945|ARNT_DROME Aryl hydrocarbon receptor nuclear translocator homolog
OS=Drosophila melanogaster GN=tgo PE=1 SV=3
Length = 642
Score = 82.8 bits (203), Expect = 6e-16, Method: Composition-based stats.
Identities = 40/42 (95%), Positives = 40/42 (95%)
Query: 1 MTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALRVTA 42
MTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALR T
Sbjct: 29 MTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALRGTG 70
>sp|Q9BE97|ARNT_BOVIN Aryl hydrocarbon receptor nuclear translocator OS=Bos taurus
GN=ARNT PE=2 SV=1
Length = 790
Score = 82.0 bits (201), Expect = 1e-15, Method: Composition-based stats.
Identities = 38/42 (90%), Positives = 40/42 (95%)
Query: 1 MTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALRVTA 42
MTAYITELSDMVPTCSALARKPDKLTILRMAV+HMK+LR T
Sbjct: 105 MTAYITELSDMVPTCSALARKPDKLTILRMAVSHMKSLRGTG 146
>sp|P27540|ARNT_HUMAN Aryl hydrocarbon receptor nuclear translocator OS=Homo sapiens
GN=ARNT PE=1 SV=1
Length = 789
Score = 81.6 bits (200), Expect = 1e-15, Method: Composition-based stats.
Identities = 38/42 (90%), Positives = 40/42 (95%)
Query: 1 MTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALRVTA 42
MTAYITELSDMVPTCSALARKPDKLTILRMAV+HMK+LR T
Sbjct: 105 MTAYITELSDMVPTCSALARKPDKLTILRMAVSHMKSLRGTG 146
>sp|P53762|ARNT_MOUSE Aryl hydrocarbon receptor nuclear translocator OS=Mus musculus
GN=Arnt PE=1 SV=3
Length = 791
Score = 81.3 bits (199), Expect = 2e-15, Method: Composition-based stats.
Identities = 38/42 (90%), Positives = 40/42 (95%)
Query: 1 MTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALRVTA 42
MTAYITELSDMVPTCSALARKPDKLTILRMAV+HMK+LR T
Sbjct: 105 MTAYITELSDMVPTCSALARKPDKLTILRMAVSHMKSLRGTG 146
>sp|P41739|ARNT_RAT Aryl hydrocarbon receptor nuclear translocator OS=Rattus norvegicus
GN=Arnt PE=1 SV=2
Length = 800
Score = 81.3 bits (199), Expect = 2e-15, Method: Composition-based stats.
Identities = 38/42 (90%), Positives = 40/42 (95%)
Query: 1 MTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALRVTA 42
MTAYITELSDMVPTCSALARKPDKLTILRMAV+HMK+LR T
Sbjct: 105 MTAYITELSDMVPTCSALARKPDKLTILRMAVSHMKSLRGTG 146
>sp|P79832|ARNT_ONCMY Aryl hydrocarbon receptor nuclear translocator OS=Oncorhynchus
mykiss GN=arnt PE=1 SV=1
Length = 723
Score = 81.3 bits (199), Expect = 2e-15, Method: Composition-based stats.
Identities = 37/39 (94%), Positives = 39/39 (100%)
Query: 1 MTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALR 39
MTAYITELSDMVPTCSALARKPDKLTILRMAV+HMK+LR
Sbjct: 81 MTAYITELSDMVPTCSALARKPDKLTILRMAVSHMKSLR 119
>sp|O02748|ARNT_RABIT Aryl hydrocarbon receptor nuclear translocator OS=Oryctolagus
cuniculus GN=ARNT PE=2 SV=1
Length = 790
Score = 80.1 bits (196), Expect = 3e-15, Method: Composition-based stats.
Identities = 37/42 (88%), Positives = 40/42 (95%)
Query: 1 MTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALRVTA 42
MTAYITELSD+VPTCSALARKPDKLTILRMAV+HMK+LR T
Sbjct: 105 MTAYITELSDIVPTCSALARKPDKLTILRMAVSHMKSLRGTG 146
>sp|Q9DG12|ARNT2_DANRE Aryl hydrocarbon receptor nuclear translocator 2 OS=Danio rerio
GN=arnt2 PE=1 SV=2
Length = 737
Score = 79.7 bits (195), Expect = 4e-15, Method: Composition-based stats.
Identities = 36/42 (85%), Positives = 39/42 (92%)
Query: 1 MTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALRVTA 42
MT YITELSDMVPTCSALARKPDKLTILRMAV+HMK++R T
Sbjct: 94 MTQYITELSDMVPTCSALARKPDKLTILRMAVSHMKSMRGTG 135
>sp|Q61324|ARNT2_MOUSE Aryl hydrocarbon receptor nuclear translocator 2 OS=Mus musculus
GN=Arnt2 PE=1 SV=2
Length = 712
Score = 79.7 bits (195), Expect = 5e-15, Method: Composition-based stats.
Identities = 36/42 (85%), Positives = 39/42 (92%)
Query: 1 MTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALRVTA 42
MT YITELSDMVPTCSALARKPDKLTILRMAV+HMK++R T
Sbjct: 79 MTQYITELSDMVPTCSALARKPDKLTILRMAVSHMKSMRGTG 120
>sp|Q78E60|ARNT2_RAT Aryl hydrocarbon receptor nuclear translocator 2 OS=Rattus
norvegicus GN=Arnt2 PE=2 SV=1
Length = 712
Score = 79.7 bits (195), Expect = 5e-15, Method: Composition-based stats.
Identities = 36/42 (85%), Positives = 39/42 (92%)
Query: 1 MTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALRVTA 42
MT YITELSDMVPTCSALARKPDKLTILRMAV+HMK++R T
Sbjct: 79 MTQYITELSDMVPTCSALARKPDKLTILRMAVSHMKSMRGTG 120
>sp|Q9HBZ2|ARNT2_HUMAN Aryl hydrocarbon receptor nuclear translocator 2 OS=Homo sapiens
GN=ARNT2 PE=1 SV=2
Length = 717
Score = 79.3 bits (194), Expect = 7e-15, Method: Composition-based stats.
Identities = 36/42 (85%), Positives = 39/42 (92%)
Query: 1 MTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALRVTA 42
MT YITELSDMVPTCSALARKPDKLTILRMAV+HMK++R T
Sbjct: 79 MTQYITELSDMVPTCSALARKPDKLTILRMAVSHMKSMRGTG 120
>sp|O02219|AHA1_CAEEL Aryl hydrocarbon receptor nuclear translocator homolog
OS=Caenorhabditis elegans GN=aha-1 PE=1 SV=1
Length = 453
Score = 66.2 bits (160), Expect = 6e-11, Method: Composition-based stats.
Identities = 28/39 (71%), Positives = 34/39 (87%)
Query: 1 MTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALR 39
MT YI EL++MVP C++L RKPDKLTILRMAV+HMK +R
Sbjct: 60 MTHYINELAEMVPQCASLGRKPDKLTILRMAVSHMKGIR 98
>sp|Q6YGZ5|BMAL1_TYTAL Aryl hydrocarbon receptor nuclear translocator-like protein 1
OS=Tyto alba GN=ARNTL PE=2 SV=1
Length = 633
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 25/39 (64%), Positives = 33/39 (84%)
Query: 1 MTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALR 39
M ++I EL+ +VPTC+A++RK DKLT+LRMAV HMK LR
Sbjct: 95 MNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLR 133
>sp|Q5R4T2|BMAL1_PONAB Aryl hydrocarbon receptor nuclear translocator-like protein 1
OS=Pongo abelii GN=ARNTL PE=2 SV=1
Length = 625
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 25/39 (64%), Positives = 33/39 (84%)
Query: 1 MTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALR 39
M ++I EL+ +VPTC+A++RK DKLT+LRMAV HMK LR
Sbjct: 88 MNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLR 126
>sp|Q9I8T7|BMAL1_CHICK Aryl hydrocarbon receptor nuclear translocator-like protein 1
OS=Gallus gallus GN=ARNTL PE=1 SV=1
Length = 633
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 25/39 (64%), Positives = 33/39 (84%)
Query: 1 MTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALR 39
M ++I EL+ +VPTC+A++RK DKLT+LRMAV HMK LR
Sbjct: 95 MNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLR 133
>sp|Q91YA9|BMAL1_NANGA Aryl hydrocarbon receptor nuclear translocator-like protein 1
OS=Nannospalax galili GN=Arntl PE=1 SV=1
Length = 626
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 25/39 (64%), Positives = 33/39 (84%)
Query: 1 MTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALR 39
M ++I EL+ +VPTC+A++RK DKLT+LRMAV HMK LR
Sbjct: 88 MNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLR 126
>sp|Q9WTL8|BMAL1_MOUSE Aryl hydrocarbon receptor nuclear translocator-like protein 1
OS=Mus musculus GN=Arntl PE=1 SV=2
Length = 632
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 25/39 (64%), Positives = 33/39 (84%)
Query: 1 MTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALR 39
M ++I EL+ +VPTC+A++RK DKLT+LRMAV HMK LR
Sbjct: 95 MNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLR 133
>sp|O00327|BMAL1_HUMAN Aryl hydrocarbon receptor nuclear translocator-like protein 1
OS=Homo sapiens GN=ARNTL PE=1 SV=2
Length = 626
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 25/39 (64%), Positives = 33/39 (84%)
Query: 1 MTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALR 39
M ++I EL+ +VPTC+A++RK DKLT+LRMAV HMK LR
Sbjct: 88 MNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLR 126
>sp|A0MLS5|BMAL1_HORSE Aryl hydrocarbon receptor nuclear translocator-like protein 1
OS=Equus caballus GN=ARNTL PE=2 SV=1
Length = 626
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 25/39 (64%), Positives = 33/39 (84%)
Query: 1 MTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALR 39
M ++I EL+ +VPTC+A++RK DKLT+LRMAV HMK LR
Sbjct: 88 MNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLR 126
>sp|O88529|BMAL1_MESAU Aryl hydrocarbon receptor nuclear translocator-like protein 1
OS=Mesocricetus auratus GN=ARNTL PE=2 SV=1
Length = 626
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 25/39 (64%), Positives = 33/39 (84%)
Query: 1 MTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALR 39
M ++I EL+ +VPTC+A++RK DKLT+LRMAV HMK LR
Sbjct: 88 MNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLR 126
>sp|Q9EPW1|BMAL1_RAT Aryl hydrocarbon receptor nuclear translocator-like protein 1
OS=Rattus norvegicus GN=Arntl PE=2 SV=4
Length = 626
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 25/39 (64%), Positives = 33/39 (84%)
Query: 1 MTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALR 39
M ++I EL+ +VPTC+A++RK DKLT+LRMAV HMK LR
Sbjct: 88 MNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLR 126
>sp|O61734|CYCL_DROME Protein cycle OS=Drosophila melanogaster GN=cyc PE=2 SV=2
Length = 413
Score = 55.5 bits (132), Expect = 9e-08, Method: Composition-based stats.
Identities = 23/39 (58%), Positives = 29/39 (74%)
Query: 1 MTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALR 39
M YI ELS M+P C A+ RK DKLT+LRMAV H++ +R
Sbjct: 46 MNTYINELSSMIPMCFAMQRKLDKLTVLRMAVQHLRGIR 84
>sp|Q8QGQ7|BMAL2_CHICK Aryl hydrocarbon receptor nuclear translocator-like protein 2
OS=Gallus gallus GN=ARNTL2 PE=1 SV=1
Length = 622
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 23/39 (58%), Positives = 30/39 (76%)
Query: 1 MTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALR 39
M I ELS M+P C+ +ARK DKLT+LRMAV H+K+L+
Sbjct: 108 MNNLIEELSAMIPQCNPMARKLDKLTVLRMAVQHLKSLK 146
>sp|Q8WYA1|BMAL2_HUMAN Aryl hydrocarbon receptor nuclear translocator-like protein 2
OS=Homo sapiens GN=ARNTL2 PE=1 SV=2
Length = 636
Score = 52.4 bits (124), Expect = 8e-07, Method: Composition-based stats.
Identities = 22/39 (56%), Positives = 30/39 (76%)
Query: 1 MTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALR 39
M I ELS M+P C+ +ARK DKLT+LRMAV H+++L+
Sbjct: 123 MNNLIEELSAMIPQCNPMARKLDKLTVLRMAVQHLRSLK 161
>sp|Q2VPD4|BMAL2_MOUSE Aryl hydrocarbon receptor nuclear translocator-like protein 2
OS=Mus musculus GN=Arntl2 PE=2 SV=2
Length = 579
Score = 36.2 bits (82), Expect = 0.069, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 1 MTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKALR 39
M I +LS M+P A K DKL++LR AV ++++LR
Sbjct: 64 MNHLIQKLSSMIPPHIPTAHKLDKLSVLRRAVQYLRSLR 102
>sp|Q6CUS7|DPOE_KLULA DNA polymerase epsilon catalytic subunit A OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=POL2 PE=3 SV=1
Length = 2185
Score = 28.9 bits (63), Expect = 8.6, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 17 ALARKPDKLTILRMAVAHMKALRVTAVNTFRHHSQPWLFV 56
A+ +PD++ +L+ H++ +R T ++TF W FV
Sbjct: 325 AIFNEPDEMALLQRFFEHIRDVRPTVISTFNGDFFDWPFV 364
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.329 0.134 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,445,407
Number of Sequences: 539616
Number of extensions: 569168
Number of successful extensions: 1524
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1497
Number of HSP's gapped (non-prelim): 27
length of query: 67
length of database: 191,569,459
effective HSP length: 39
effective length of query: 28
effective length of database: 170,524,435
effective search space: 4774684180
effective search space used: 4774684180
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.8 bits)